Multiple sequence alignment - TraesCS6A01G168200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G168200 chr6A 100.000 3777 0 0 1 3777 172139863 172136087 0.000000e+00 6975.0
1 TraesCS6A01G168200 chr6D 94.759 1698 56 20 968 2647 133298247 133296565 0.000000e+00 2612.0
2 TraesCS6A01G168200 chr6D 93.838 925 43 5 2864 3777 133290000 133289079 0.000000e+00 1380.0
3 TraesCS6A01G168200 chr6D 93.151 146 7 1 2650 2792 133290169 133290024 1.060000e-50 211.0
4 TraesCS6A01G168200 chr6B 94.125 800 31 8 1032 1819 232169826 232169031 0.000000e+00 1203.0
5 TraesCS6A01G168200 chr6B 94.100 678 29 7 1821 2496 232168949 232168281 0.000000e+00 1020.0
6 TraesCS6A01G168200 chr6B 95.652 69 3 0 972 1040 232171208 232171140 1.110000e-20 111.0
7 TraesCS6A01G168200 chr6B 93.220 59 4 0 2522 2580 232168084 232168026 1.870000e-13 87.9
8 TraesCS6A01G168200 chr3A 98.168 546 8 1 1 544 210162430 210162975 0.000000e+00 952.0
9 TraesCS6A01G168200 chr7A 97.985 546 9 1 1 544 164823335 164822790 0.000000e+00 946.0
10 TraesCS6A01G168200 chr1A 97.307 557 13 1 1 555 496278104 496278660 0.000000e+00 944.0
11 TraesCS6A01G168200 chr1A 97.806 547 10 1 1 545 546303617 546304163 0.000000e+00 942.0
12 TraesCS6A01G168200 chr1A 97.794 544 10 1 1 542 344390482 344391025 0.000000e+00 937.0
13 TraesCS6A01G168200 chr1A 97.623 547 11 1 1 545 456540844 456541390 0.000000e+00 937.0
14 TraesCS6A01G168200 chr1A 88.542 96 11 0 2581 2676 438296519 438296424 2.380000e-22 117.0
15 TraesCS6A01G168200 chr1A 87.879 66 8 0 893 958 57138401 57138466 1.120000e-10 78.7
16 TraesCS6A01G168200 chr5A 97.802 546 10 1 1 544 340229632 340229087 0.000000e+00 941.0
17 TraesCS6A01G168200 chr5A 97.623 547 11 1 1 545 141994184 141994730 0.000000e+00 937.0
18 TraesCS6A01G168200 chr5A 97.623 547 11 1 1 545 291496967 291496421 0.000000e+00 937.0
19 TraesCS6A01G168200 chr5A 86.170 94 13 0 2581 2674 51690147 51690054 6.670000e-18 102.0
20 TraesCS6A01G168200 chr5A 86.486 74 9 1 881 954 525081274 525081346 3.130000e-11 80.5
21 TraesCS6A01G168200 chrUn 89.558 249 23 2 3182 3430 245702582 245702827 2.830000e-81 313.0
22 TraesCS6A01G168200 chrUn 89.558 249 23 2 3182 3430 313335818 313336063 2.830000e-81 313.0
23 TraesCS6A01G168200 chrUn 89.558 249 23 2 3182 3430 390275318 390275563 2.830000e-81 313.0
24 TraesCS6A01G168200 chrUn 89.558 249 23 2 3182 3430 427736328 427736573 2.830000e-81 313.0
25 TraesCS6A01G168200 chrUn 89.020 255 25 2 3182 3436 429647876 429647625 2.830000e-81 313.0
26 TraesCS6A01G168200 chrUn 89.558 249 23 2 3182 3430 439157096 439157341 2.830000e-81 313.0
27 TraesCS6A01G168200 chrUn 89.020 255 25 2 3182 3436 447608275 447608024 2.830000e-81 313.0
28 TraesCS6A01G168200 chr5D 89.157 249 24 2 3182 3430 19004129 19004374 1.320000e-79 307.0
29 TraesCS6A01G168200 chr5D 90.789 76 7 0 2599 2674 61715072 61714997 6.670000e-18 102.0
30 TraesCS6A01G168200 chr1B 88.542 96 10 1 2581 2676 453340779 453340685 8.570000e-22 115.0
31 TraesCS6A01G168200 chr2D 93.056 72 5 0 2599 2670 160215151 160215080 5.160000e-19 106.0
32 TraesCS6A01G168200 chr3D 90.000 80 8 0 2599 2678 575943005 575942926 1.860000e-18 104.0
33 TraesCS6A01G168200 chr3D 93.478 46 2 1 913 958 586001513 586001469 2.430000e-07 67.6
34 TraesCS6A01G168200 chr7D 89.610 77 8 0 2581 2657 239774465 239774389 8.630000e-17 99.0
35 TraesCS6A01G168200 chr7D 90.323 62 6 0 894 955 36663307 36663246 8.700000e-12 82.4
36 TraesCS6A01G168200 chr7B 87.356 87 10 1 2599 2684 450642290 450642204 8.630000e-17 99.0
37 TraesCS6A01G168200 chr2A 91.429 70 6 0 547 616 604977496 604977427 3.110000e-16 97.1
38 TraesCS6A01G168200 chr4A 85.333 75 10 1 881 955 430223383 430223310 4.050000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G168200 chr6A 172136087 172139863 3776 True 6975.000 6975 100.00000 1 3777 1 chr6A.!!$R1 3776
1 TraesCS6A01G168200 chr6D 133296565 133298247 1682 True 2612.000 2612 94.75900 968 2647 1 chr6D.!!$R1 1679
2 TraesCS6A01G168200 chr6D 133289079 133290169 1090 True 795.500 1380 93.49450 2650 3777 2 chr6D.!!$R2 1127
3 TraesCS6A01G168200 chr6B 232168026 232171208 3182 True 605.475 1203 94.27425 972 2580 4 chr6B.!!$R1 1608
4 TraesCS6A01G168200 chr3A 210162430 210162975 545 False 952.000 952 98.16800 1 544 1 chr3A.!!$F1 543
5 TraesCS6A01G168200 chr7A 164822790 164823335 545 True 946.000 946 97.98500 1 544 1 chr7A.!!$R1 543
6 TraesCS6A01G168200 chr1A 496278104 496278660 556 False 944.000 944 97.30700 1 555 1 chr1A.!!$F4 554
7 TraesCS6A01G168200 chr1A 546303617 546304163 546 False 942.000 942 97.80600 1 545 1 chr1A.!!$F5 544
8 TraesCS6A01G168200 chr1A 344390482 344391025 543 False 937.000 937 97.79400 1 542 1 chr1A.!!$F2 541
9 TraesCS6A01G168200 chr1A 456540844 456541390 546 False 937.000 937 97.62300 1 545 1 chr1A.!!$F3 544
10 TraesCS6A01G168200 chr5A 340229087 340229632 545 True 941.000 941 97.80200 1 544 1 chr5A.!!$R3 543
11 TraesCS6A01G168200 chr5A 141994184 141994730 546 False 937.000 937 97.62300 1 545 1 chr5A.!!$F1 544
12 TraesCS6A01G168200 chr5A 291496421 291496967 546 True 937.000 937 97.62300 1 545 1 chr5A.!!$R2 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
717 720 0.105964 TTGAGGATCGAGGGAGAGGG 60.106 60.0 0.0 0.0 38.61 4.30 F
822 825 0.107214 CGGCATGGGGAGAAAGCTAA 60.107 55.0 0.0 0.0 0.00 3.09 F
898 901 0.173481 CGGACGAAGAATGAGGCAGA 59.827 55.0 0.0 0.0 0.00 4.26 F
1160 2506 0.624500 CTTCCCCTCCCCTGGATTCA 60.625 60.0 0.0 0.0 0.00 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 3131 0.319900 GCTCGTCTGAAGTGAAGCCA 60.320 55.000 0.00 0.0 0.00 4.75 R
2077 3505 1.812571 GCCAACGAATGTGGAATGTCT 59.187 47.619 0.00 0.0 0.00 3.41 R
2364 3792 2.672307 GCTGCAGCTGTGAAGGCT 60.672 61.111 31.33 0.0 41.07 4.58 R
3066 4677 2.504367 CCAAACACAGGAAGTAGGGTG 58.496 52.381 0.00 0.0 37.29 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 171 1.292061 TGTGACGTTTGGTAGCACAC 58.708 50.000 1.04 1.04 34.85 3.82
396 399 6.830838 TGATCAATGAGCTAGTCAAGTAGAGA 59.169 38.462 0.00 0.00 39.19 3.10
546 549 4.566837 TCTAGGGCATATTTCCTTCAGGA 58.433 43.478 0.00 0.00 43.73 3.86
560 563 4.720649 CTTCAGGAGGAGATGTAAACGA 57.279 45.455 0.00 0.00 0.00 3.85
561 564 5.269505 CTTCAGGAGGAGATGTAAACGAT 57.730 43.478 0.00 0.00 0.00 3.73
562 565 4.655762 TCAGGAGGAGATGTAAACGATG 57.344 45.455 0.00 0.00 0.00 3.84
563 566 4.278310 TCAGGAGGAGATGTAAACGATGA 58.722 43.478 0.00 0.00 0.00 2.92
564 567 4.339530 TCAGGAGGAGATGTAAACGATGAG 59.660 45.833 0.00 0.00 0.00 2.90
565 568 3.068873 AGGAGGAGATGTAAACGATGAGC 59.931 47.826 0.00 0.00 0.00 4.26
567 570 1.523095 GGAGATGTAAACGATGAGCGC 59.477 52.381 0.00 0.00 46.04 5.92
568 571 2.464865 GAGATGTAAACGATGAGCGCT 58.535 47.619 11.27 11.27 46.04 5.92
569 572 3.550233 GGAGATGTAAACGATGAGCGCTA 60.550 47.826 11.50 0.00 46.04 4.26
570 573 3.372954 AGATGTAAACGATGAGCGCTAC 58.627 45.455 11.50 2.08 46.04 3.58
571 574 1.541475 TGTAAACGATGAGCGCTACG 58.459 50.000 22.75 22.75 46.04 3.51
582 585 4.286320 CGCTACGCTGGGGCTAGG 62.286 72.222 0.00 0.00 36.09 3.02
583 586 4.610714 GCTACGCTGGGGCTAGGC 62.611 72.222 8.00 8.00 36.09 3.93
584 587 3.154473 CTACGCTGGGGCTAGGCA 61.154 66.667 19.14 0.00 36.09 4.75
585 588 3.447025 CTACGCTGGGGCTAGGCAC 62.447 68.421 19.14 16.05 36.09 5.01
592 595 2.125106 GGGCTAGGCACCAACGAG 60.125 66.667 19.14 0.00 0.00 4.18
593 596 2.820037 GGCTAGGCACCAACGAGC 60.820 66.667 12.16 0.00 0.00 5.03
594 597 2.047274 GCTAGGCACCAACGAGCA 60.047 61.111 0.00 0.00 33.26 4.26
595 598 2.103042 GCTAGGCACCAACGAGCAG 61.103 63.158 0.00 0.00 33.26 4.24
596 599 2.047274 TAGGCACCAACGAGCAGC 60.047 61.111 0.00 0.00 0.00 5.25
597 600 3.605749 TAGGCACCAACGAGCAGCC 62.606 63.158 0.00 0.00 45.54 4.85
599 602 3.730761 GCACCAACGAGCAGCCTG 61.731 66.667 0.00 0.00 0.00 4.85
600 603 3.052082 CACCAACGAGCAGCCTGG 61.052 66.667 0.00 0.00 34.95 4.45
601 604 3.241530 ACCAACGAGCAGCCTGGA 61.242 61.111 0.00 0.00 32.97 3.86
602 605 2.270205 CCAACGAGCAGCCTGGAT 59.730 61.111 0.00 0.00 0.00 3.41
603 606 1.817099 CCAACGAGCAGCCTGGATC 60.817 63.158 0.00 0.00 0.00 3.36
604 607 1.220206 CAACGAGCAGCCTGGATCT 59.780 57.895 0.00 0.00 0.00 2.75
605 608 1.088340 CAACGAGCAGCCTGGATCTG 61.088 60.000 0.00 0.00 34.79 2.90
606 609 1.260538 AACGAGCAGCCTGGATCTGA 61.261 55.000 0.00 0.00 33.54 3.27
607 610 1.067749 CGAGCAGCCTGGATCTGAG 59.932 63.158 0.00 0.00 33.54 3.35
608 611 1.390383 CGAGCAGCCTGGATCTGAGA 61.390 60.000 0.00 0.00 33.54 3.27
609 612 0.390124 GAGCAGCCTGGATCTGAGAG 59.610 60.000 0.00 0.00 33.54 3.20
610 613 1.227615 GCAGCCTGGATCTGAGAGC 60.228 63.158 0.00 0.00 33.54 4.09
611 614 1.067749 CAGCCTGGATCTGAGAGCG 59.932 63.158 0.00 0.00 33.54 5.03
612 615 2.132996 AGCCTGGATCTGAGAGCGG 61.133 63.158 0.00 0.00 0.00 5.52
613 616 3.136750 CCTGGATCTGAGAGCGGG 58.863 66.667 0.00 0.00 0.00 6.13
614 617 2.506061 CCTGGATCTGAGAGCGGGG 61.506 68.421 0.00 0.00 0.00 5.73
615 618 2.444706 TGGATCTGAGAGCGGGGG 60.445 66.667 0.00 0.00 0.00 5.40
616 619 3.934962 GGATCTGAGAGCGGGGGC 61.935 72.222 0.00 0.00 0.00 5.80
617 620 4.292178 GATCTGAGAGCGGGGGCG 62.292 72.222 0.00 0.00 0.00 6.13
629 632 3.541713 GGGGCGCGAAGAGGAGAT 61.542 66.667 12.10 0.00 0.00 2.75
630 633 2.279784 GGGCGCGAAGAGGAGATG 60.280 66.667 12.10 0.00 0.00 2.90
631 634 2.786495 GGGCGCGAAGAGGAGATGA 61.786 63.158 12.10 0.00 0.00 2.92
632 635 1.299773 GGCGCGAAGAGGAGATGAG 60.300 63.158 12.10 0.00 0.00 2.90
633 636 1.948635 GCGCGAAGAGGAGATGAGC 60.949 63.158 12.10 0.00 0.00 4.26
634 637 1.435105 CGCGAAGAGGAGATGAGCA 59.565 57.895 0.00 0.00 0.00 4.26
635 638 0.594540 CGCGAAGAGGAGATGAGCAG 60.595 60.000 0.00 0.00 0.00 4.24
636 639 0.459489 GCGAAGAGGAGATGAGCAGT 59.541 55.000 0.00 0.00 0.00 4.40
637 640 1.802136 GCGAAGAGGAGATGAGCAGTG 60.802 57.143 0.00 0.00 0.00 3.66
638 641 1.202394 CGAAGAGGAGATGAGCAGTGG 60.202 57.143 0.00 0.00 0.00 4.00
639 642 0.540923 AAGAGGAGATGAGCAGTGGC 59.459 55.000 0.00 0.00 41.61 5.01
657 660 4.221422 GGCGCTCACGATGGCCTA 62.221 66.667 7.64 0.00 43.93 3.93
658 661 2.659897 GCGCTCACGATGGCCTAG 60.660 66.667 3.32 0.00 43.93 3.02
659 662 2.028190 CGCTCACGATGGCCTAGG 59.972 66.667 3.67 3.67 43.93 3.02
660 663 2.423446 GCTCACGATGGCCTAGGG 59.577 66.667 11.72 0.00 0.00 3.53
661 664 2.435693 GCTCACGATGGCCTAGGGT 61.436 63.158 11.72 0.00 0.00 4.34
662 665 1.443407 CTCACGATGGCCTAGGGTG 59.557 63.158 11.72 9.76 0.00 4.61
663 666 2.203070 CACGATGGCCTAGGGTGC 60.203 66.667 11.72 0.00 0.00 5.01
674 677 2.199117 TAGGGTGCCTAGAACAGCG 58.801 57.895 8.28 0.00 36.40 5.18
675 678 0.613853 TAGGGTGCCTAGAACAGCGT 60.614 55.000 12.53 12.53 36.40 5.07
676 679 1.741770 GGGTGCCTAGAACAGCGTG 60.742 63.158 8.28 0.00 36.40 5.34
677 680 1.292223 GGTGCCTAGAACAGCGTGA 59.708 57.895 0.00 0.00 0.00 4.35
678 681 0.108138 GGTGCCTAGAACAGCGTGAT 60.108 55.000 0.00 0.00 0.00 3.06
679 682 1.002366 GTGCCTAGAACAGCGTGATG 58.998 55.000 0.00 0.00 0.00 3.07
680 683 0.108186 TGCCTAGAACAGCGTGATGG 60.108 55.000 0.00 0.00 0.00 3.51
681 684 1.432270 GCCTAGAACAGCGTGATGGC 61.432 60.000 0.00 0.00 0.00 4.40
682 685 1.148157 CCTAGAACAGCGTGATGGCG 61.148 60.000 0.00 0.00 38.18 5.69
683 686 1.148157 CTAGAACAGCGTGATGGCGG 61.148 60.000 0.00 0.00 38.18 6.13
684 687 4.166011 GAACAGCGTGATGGCGGC 62.166 66.667 0.00 0.00 38.18 6.53
698 701 2.261671 CGGCGACTGCTGGTAAGT 59.738 61.111 0.00 0.00 44.10 2.24
699 702 1.374252 CGGCGACTGCTGGTAAGTT 60.374 57.895 0.00 0.00 44.10 2.66
700 703 1.626654 CGGCGACTGCTGGTAAGTTG 61.627 60.000 0.00 0.00 44.10 3.16
701 704 0.320421 GGCGACTGCTGGTAAGTTGA 60.320 55.000 0.00 0.00 42.25 3.18
702 705 1.071605 GCGACTGCTGGTAAGTTGAG 58.928 55.000 0.00 0.00 38.39 3.02
703 706 1.714794 CGACTGCTGGTAAGTTGAGG 58.285 55.000 0.00 0.00 31.62 3.86
704 707 1.272490 CGACTGCTGGTAAGTTGAGGA 59.728 52.381 0.00 0.00 31.62 3.71
705 708 2.093973 CGACTGCTGGTAAGTTGAGGAT 60.094 50.000 0.00 0.00 31.62 3.24
706 709 3.526534 GACTGCTGGTAAGTTGAGGATC 58.473 50.000 0.00 0.00 0.00 3.36
707 710 2.093973 ACTGCTGGTAAGTTGAGGATCG 60.094 50.000 0.00 0.00 38.61 3.69
708 711 2.166459 CTGCTGGTAAGTTGAGGATCGA 59.834 50.000 0.00 0.00 38.61 3.59
709 712 2.166459 TGCTGGTAAGTTGAGGATCGAG 59.834 50.000 0.00 0.00 38.61 4.04
710 713 2.482142 GCTGGTAAGTTGAGGATCGAGG 60.482 54.545 0.00 0.00 38.61 4.63
711 714 2.101582 CTGGTAAGTTGAGGATCGAGGG 59.898 54.545 0.00 0.00 38.61 4.30
712 715 2.291996 TGGTAAGTTGAGGATCGAGGGA 60.292 50.000 0.00 0.00 38.61 4.20
713 716 2.362717 GGTAAGTTGAGGATCGAGGGAG 59.637 54.545 0.00 0.00 38.61 4.30
714 717 2.534042 AAGTTGAGGATCGAGGGAGA 57.466 50.000 0.00 0.00 38.61 3.71
715 718 2.065899 AGTTGAGGATCGAGGGAGAG 57.934 55.000 0.00 0.00 38.61 3.20
716 719 1.036707 GTTGAGGATCGAGGGAGAGG 58.963 60.000 0.00 0.00 38.61 3.69
717 720 0.105964 TTGAGGATCGAGGGAGAGGG 60.106 60.000 0.00 0.00 38.61 4.30
718 721 0.994050 TGAGGATCGAGGGAGAGGGA 60.994 60.000 0.00 0.00 38.61 4.20
719 722 0.251165 GAGGATCGAGGGAGAGGGAG 60.251 65.000 0.00 0.00 0.00 4.30
720 723 1.228737 GGATCGAGGGAGAGGGAGG 60.229 68.421 0.00 0.00 0.00 4.30
721 724 1.906333 GATCGAGGGAGAGGGAGGC 60.906 68.421 0.00 0.00 0.00 4.70
722 725 3.460478 ATCGAGGGAGAGGGAGGCC 62.460 68.421 0.00 0.00 0.00 5.19
723 726 4.465446 CGAGGGAGAGGGAGGCCA 62.465 72.222 5.01 0.00 0.00 5.36
724 727 2.445654 GAGGGAGAGGGAGGCCAG 60.446 72.222 5.01 0.00 0.00 4.85
725 728 2.955246 AGGGAGAGGGAGGCCAGA 60.955 66.667 5.01 0.00 0.00 3.86
726 729 2.445654 GGGAGAGGGAGGCCAGAG 60.446 72.222 5.01 0.00 0.00 3.35
727 730 2.445654 GGAGAGGGAGGCCAGAGG 60.446 72.222 5.01 0.00 0.00 3.69
763 766 4.049393 GCTACGCCATGATGGGAC 57.951 61.111 14.26 0.00 38.19 4.46
764 767 1.956170 GCTACGCCATGATGGGACG 60.956 63.158 14.26 11.57 38.19 4.79
765 768 1.300931 CTACGCCATGATGGGACGG 60.301 63.158 14.26 0.00 38.19 4.79
766 769 2.715532 CTACGCCATGATGGGACGGG 62.716 65.000 14.26 3.43 38.19 5.28
767 770 4.935495 CGCCATGATGGGACGGGG 62.935 72.222 14.26 0.00 38.19 5.73
768 771 4.586235 GCCATGATGGGACGGGGG 62.586 72.222 14.26 0.00 38.19 5.40
782 785 2.524394 GGGGGCGCTGATAGGAGA 60.524 66.667 7.64 0.00 0.00 3.71
783 786 2.578714 GGGGGCGCTGATAGGAGAG 61.579 68.421 7.64 0.00 0.00 3.20
784 787 1.531840 GGGGCGCTGATAGGAGAGA 60.532 63.158 7.64 0.00 0.00 3.10
785 788 0.902516 GGGGCGCTGATAGGAGAGAT 60.903 60.000 7.64 0.00 0.00 2.75
786 789 0.246086 GGGCGCTGATAGGAGAGATG 59.754 60.000 7.64 0.00 0.00 2.90
787 790 1.252175 GGCGCTGATAGGAGAGATGA 58.748 55.000 7.64 0.00 0.00 2.92
788 791 1.202114 GGCGCTGATAGGAGAGATGAG 59.798 57.143 7.64 0.00 0.00 2.90
789 792 2.158559 GCGCTGATAGGAGAGATGAGA 58.841 52.381 0.00 0.00 0.00 3.27
790 793 2.162208 GCGCTGATAGGAGAGATGAGAG 59.838 54.545 0.00 0.00 0.00 3.20
791 794 3.673902 CGCTGATAGGAGAGATGAGAGA 58.326 50.000 0.00 0.00 0.00 3.10
792 795 3.686241 CGCTGATAGGAGAGATGAGAGAG 59.314 52.174 0.00 0.00 0.00 3.20
793 796 4.563374 CGCTGATAGGAGAGATGAGAGAGA 60.563 50.000 0.00 0.00 0.00 3.10
794 797 4.940046 GCTGATAGGAGAGATGAGAGAGAG 59.060 50.000 0.00 0.00 0.00 3.20
795 798 5.280164 GCTGATAGGAGAGATGAGAGAGAGA 60.280 48.000 0.00 0.00 0.00 3.10
796 799 6.114187 TGATAGGAGAGATGAGAGAGAGAC 57.886 45.833 0.00 0.00 0.00 3.36
797 800 3.475566 AGGAGAGATGAGAGAGAGACG 57.524 52.381 0.00 0.00 0.00 4.18
798 801 2.771943 AGGAGAGATGAGAGAGAGACGT 59.228 50.000 0.00 0.00 0.00 4.34
799 802 3.199946 AGGAGAGATGAGAGAGAGACGTT 59.800 47.826 0.00 0.00 0.00 3.99
800 803 3.560068 GGAGAGATGAGAGAGAGACGTTC 59.440 52.174 0.00 0.00 0.00 3.95
801 804 3.194861 AGAGATGAGAGAGAGACGTTCG 58.805 50.000 0.00 0.00 0.00 3.95
802 805 3.118920 AGAGATGAGAGAGAGACGTTCGA 60.119 47.826 0.00 0.00 0.00 3.71
803 806 2.933906 AGATGAGAGAGAGACGTTCGAC 59.066 50.000 0.00 0.00 0.00 4.20
813 816 4.444838 CGTTCGACGGCATGGGGA 62.445 66.667 0.00 0.00 38.08 4.81
814 817 2.511600 GTTCGACGGCATGGGGAG 60.512 66.667 0.00 0.00 0.00 4.30
815 818 2.682136 TTCGACGGCATGGGGAGA 60.682 61.111 0.00 0.00 0.00 3.71
816 819 2.287274 TTCGACGGCATGGGGAGAA 61.287 57.895 0.00 0.00 0.00 2.87
817 820 1.832719 TTCGACGGCATGGGGAGAAA 61.833 55.000 0.00 0.00 0.00 2.52
818 821 1.815421 CGACGGCATGGGGAGAAAG 60.815 63.158 0.00 0.00 0.00 2.62
819 822 2.044946 ACGGCATGGGGAGAAAGC 60.045 61.111 0.00 0.00 0.00 3.51
820 823 2.273449 CGGCATGGGGAGAAAGCT 59.727 61.111 0.00 0.00 0.00 3.74
821 824 1.271840 ACGGCATGGGGAGAAAGCTA 61.272 55.000 0.00 0.00 0.00 3.32
822 825 0.107214 CGGCATGGGGAGAAAGCTAA 60.107 55.000 0.00 0.00 0.00 3.09
823 826 1.681780 CGGCATGGGGAGAAAGCTAAA 60.682 52.381 0.00 0.00 0.00 1.85
824 827 1.751351 GGCATGGGGAGAAAGCTAAAC 59.249 52.381 0.00 0.00 0.00 2.01
825 828 1.401905 GCATGGGGAGAAAGCTAAACG 59.598 52.381 0.00 0.00 0.00 3.60
826 829 2.017049 CATGGGGAGAAAGCTAAACGG 58.983 52.381 0.00 0.00 0.00 4.44
827 830 1.354101 TGGGGAGAAAGCTAAACGGA 58.646 50.000 0.00 0.00 0.00 4.69
828 831 1.002773 TGGGGAGAAAGCTAAACGGAC 59.997 52.381 0.00 0.00 0.00 4.79
829 832 1.356938 GGGAGAAAGCTAAACGGACG 58.643 55.000 0.00 0.00 0.00 4.79
830 833 1.337541 GGGAGAAAGCTAAACGGACGT 60.338 52.381 0.00 0.00 0.00 4.34
831 834 2.094545 GGGAGAAAGCTAAACGGACGTA 60.095 50.000 0.00 0.00 0.00 3.57
832 835 3.177487 GGAGAAAGCTAAACGGACGTAG 58.823 50.000 0.00 0.00 0.00 3.51
833 836 3.119708 GGAGAAAGCTAAACGGACGTAGA 60.120 47.826 0.00 0.00 0.00 2.59
834 837 4.479619 GAGAAAGCTAAACGGACGTAGAA 58.520 43.478 0.00 0.00 0.00 2.10
835 838 4.874970 AGAAAGCTAAACGGACGTAGAAA 58.125 39.130 0.00 0.00 0.00 2.52
836 839 5.291971 AGAAAGCTAAACGGACGTAGAAAA 58.708 37.500 0.00 0.00 0.00 2.29
837 840 4.979564 AAGCTAAACGGACGTAGAAAAC 57.020 40.909 0.00 0.00 0.00 2.43
838 841 3.981211 AGCTAAACGGACGTAGAAAACA 58.019 40.909 0.00 0.00 0.00 2.83
839 842 4.370917 AGCTAAACGGACGTAGAAAACAA 58.629 39.130 0.00 0.00 0.00 2.83
840 843 4.992951 AGCTAAACGGACGTAGAAAACAAT 59.007 37.500 0.00 0.00 0.00 2.71
841 844 5.467735 AGCTAAACGGACGTAGAAAACAATT 59.532 36.000 0.00 0.00 0.00 2.32
842 845 6.017687 AGCTAAACGGACGTAGAAAACAATTT 60.018 34.615 0.00 0.00 0.00 1.82
843 846 7.171337 AGCTAAACGGACGTAGAAAACAATTTA 59.829 33.333 0.00 0.00 0.00 1.40
844 847 7.959109 GCTAAACGGACGTAGAAAACAATTTAT 59.041 33.333 0.00 0.00 0.00 1.40
847 850 7.529880 ACGGACGTAGAAAACAATTTATAGG 57.470 36.000 0.00 0.00 35.38 2.57
848 851 7.322664 ACGGACGTAGAAAACAATTTATAGGA 58.677 34.615 0.00 0.00 33.82 2.94
849 852 7.276438 ACGGACGTAGAAAACAATTTATAGGAC 59.724 37.037 0.00 0.00 33.82 3.85
850 853 7.254218 CGGACGTAGAAAACAATTTATAGGACC 60.254 40.741 0.00 5.40 38.42 4.46
851 854 7.254218 GGACGTAGAAAACAATTTATAGGACCG 60.254 40.741 0.00 0.00 35.21 4.79
852 855 6.536224 ACGTAGAAAACAATTTATAGGACCGG 59.464 38.462 0.00 0.00 33.82 5.28
853 856 6.757947 CGTAGAAAACAATTTATAGGACCGGA 59.242 38.462 9.46 0.00 32.57 5.14
854 857 7.278424 CGTAGAAAACAATTTATAGGACCGGAA 59.722 37.037 9.46 0.00 32.57 4.30
855 858 8.949177 GTAGAAAACAATTTATAGGACCGGAAA 58.051 33.333 9.46 0.00 0.00 3.13
856 859 8.411991 AGAAAACAATTTATAGGACCGGAAAA 57.588 30.769 9.46 0.00 0.00 2.29
857 860 8.862085 AGAAAACAATTTATAGGACCGGAAAAA 58.138 29.630 9.46 0.00 0.00 1.94
872 875 3.908737 AAAAACGAGACGGGAGGAG 57.091 52.632 0.00 0.00 0.00 3.69
873 876 1.335145 AAAAACGAGACGGGAGGAGA 58.665 50.000 0.00 0.00 0.00 3.71
874 877 0.889306 AAAACGAGACGGGAGGAGAG 59.111 55.000 0.00 0.00 0.00 3.20
875 878 1.596895 AAACGAGACGGGAGGAGAGC 61.597 60.000 0.00 0.00 0.00 4.09
876 879 3.578272 CGAGACGGGAGGAGAGCG 61.578 72.222 0.00 0.00 0.00 5.03
877 880 2.124653 GAGACGGGAGGAGAGCGA 60.125 66.667 0.00 0.00 0.00 4.93
878 881 2.124487 AGACGGGAGGAGAGCGAG 60.124 66.667 0.00 0.00 0.00 5.03
879 882 3.894947 GACGGGAGGAGAGCGAGC 61.895 72.222 0.00 0.00 0.00 5.03
883 886 3.894947 GGAGGAGAGCGAGCGGAC 61.895 72.222 0.00 0.00 0.00 4.79
884 887 4.244802 GAGGAGAGCGAGCGGACG 62.245 72.222 0.00 0.00 0.00 4.79
885 888 4.779966 AGGAGAGCGAGCGGACGA 62.780 66.667 0.00 0.00 35.09 4.20
886 889 3.812019 GGAGAGCGAGCGGACGAA 61.812 66.667 0.00 0.00 35.09 3.85
887 890 2.277628 GAGAGCGAGCGGACGAAG 60.278 66.667 0.00 0.00 35.09 3.79
888 891 2.746671 AGAGCGAGCGGACGAAGA 60.747 61.111 0.00 0.00 35.09 2.87
889 892 2.178521 GAGCGAGCGGACGAAGAA 59.821 61.111 0.00 0.00 35.09 2.52
890 893 1.226717 GAGCGAGCGGACGAAGAAT 60.227 57.895 0.00 0.00 35.09 2.40
891 894 1.475441 GAGCGAGCGGACGAAGAATG 61.475 60.000 0.00 0.00 35.09 2.67
892 895 1.516386 GCGAGCGGACGAAGAATGA 60.516 57.895 0.00 0.00 35.09 2.57
893 896 1.475441 GCGAGCGGACGAAGAATGAG 61.475 60.000 0.00 0.00 35.09 2.90
894 897 0.867753 CGAGCGGACGAAGAATGAGG 60.868 60.000 0.00 0.00 35.09 3.86
895 898 1.148759 GAGCGGACGAAGAATGAGGC 61.149 60.000 0.00 0.00 0.00 4.70
896 899 1.447838 GCGGACGAAGAATGAGGCA 60.448 57.895 0.00 0.00 0.00 4.75
897 900 1.424493 GCGGACGAAGAATGAGGCAG 61.424 60.000 0.00 0.00 0.00 4.85
898 901 0.173481 CGGACGAAGAATGAGGCAGA 59.827 55.000 0.00 0.00 0.00 4.26
899 902 1.404181 CGGACGAAGAATGAGGCAGAA 60.404 52.381 0.00 0.00 0.00 3.02
900 903 2.003301 GGACGAAGAATGAGGCAGAAC 58.997 52.381 0.00 0.00 0.00 3.01
901 904 2.612972 GGACGAAGAATGAGGCAGAACA 60.613 50.000 0.00 0.00 0.00 3.18
902 905 3.265791 GACGAAGAATGAGGCAGAACAT 58.734 45.455 0.00 0.00 0.00 2.71
903 906 3.005554 ACGAAGAATGAGGCAGAACATG 58.994 45.455 0.00 0.00 0.00 3.21
904 907 3.264947 CGAAGAATGAGGCAGAACATGA 58.735 45.455 0.00 0.00 0.00 3.07
905 908 3.875727 CGAAGAATGAGGCAGAACATGAT 59.124 43.478 0.00 0.00 0.00 2.45
906 909 4.334759 CGAAGAATGAGGCAGAACATGATT 59.665 41.667 0.00 0.00 0.00 2.57
907 910 5.503683 CGAAGAATGAGGCAGAACATGATTC 60.504 44.000 0.00 0.00 0.00 2.52
908 911 5.113446 AGAATGAGGCAGAACATGATTCT 57.887 39.130 0.00 2.04 28.74 2.40
909 912 4.882427 AGAATGAGGCAGAACATGATTCTG 59.118 41.667 22.94 22.94 46.42 3.02
910 913 3.708403 TGAGGCAGAACATGATTCTGT 57.292 42.857 25.44 14.99 45.66 3.41
911 914 4.025040 TGAGGCAGAACATGATTCTGTT 57.975 40.909 25.44 18.81 45.66 3.16
912 915 3.754850 TGAGGCAGAACATGATTCTGTTG 59.245 43.478 25.44 12.13 45.66 3.33
913 916 3.087031 AGGCAGAACATGATTCTGTTGG 58.913 45.455 25.44 11.34 45.66 3.77
914 917 2.416431 GGCAGAACATGATTCTGTTGGC 60.416 50.000 25.44 17.11 45.66 4.52
915 918 2.229543 GCAGAACATGATTCTGTTGGCA 59.770 45.455 25.44 0.00 45.66 4.92
916 919 3.672511 GCAGAACATGATTCTGTTGGCAG 60.673 47.826 25.44 10.15 45.66 4.85
927 930 2.891112 CTGTTGGCAGAAAAAGCAACA 58.109 42.857 0.00 0.00 45.28 3.33
928 931 2.604462 CTGTTGGCAGAAAAAGCAACAC 59.396 45.455 0.00 0.00 45.28 3.32
929 932 2.233431 TGTTGGCAGAAAAAGCAACACT 59.767 40.909 0.00 0.00 32.34 3.55
930 933 3.445450 TGTTGGCAGAAAAAGCAACACTA 59.555 39.130 0.00 0.00 32.34 2.74
931 934 3.708563 TGGCAGAAAAAGCAACACTAC 57.291 42.857 0.00 0.00 0.00 2.73
932 935 2.032799 TGGCAGAAAAAGCAACACTACG 59.967 45.455 0.00 0.00 0.00 3.51
933 936 2.032924 GGCAGAAAAAGCAACACTACGT 59.967 45.455 0.00 0.00 0.00 3.57
934 937 3.035942 GCAGAAAAAGCAACACTACGTG 58.964 45.455 0.00 0.00 39.75 4.49
1009 1012 2.324014 AATAGCATTCGCCGCCTCCA 62.324 55.000 0.00 0.00 39.83 3.86
1081 2416 2.119611 CCCAACCCAACCCCCTTC 59.880 66.667 0.00 0.00 0.00 3.46
1160 2506 0.624500 CTTCCCCTCCCCTGGATTCA 60.625 60.000 0.00 0.00 0.00 2.57
1236 2582 2.485122 GCGCAGAATCCGTTTGGG 59.515 61.111 0.30 0.00 35.24 4.12
1548 2896 0.824109 CGATGGCTTAGGTCAGGTCA 59.176 55.000 0.00 0.00 0.00 4.02
1550 2898 2.354704 CGATGGCTTAGGTCAGGTCAAA 60.355 50.000 0.00 0.00 0.00 2.69
1763 3112 2.203788 TGCTCCTCTTGGACGGGT 60.204 61.111 0.00 0.00 37.46 5.28
1782 3131 2.404215 GTTGATACTGTGTGAGCGTGT 58.596 47.619 0.00 0.00 0.00 4.49
1785 3134 0.670546 ATACTGTGTGAGCGTGTGGC 60.671 55.000 0.00 0.00 44.05 5.01
1813 3162 4.736126 TCAGACGAGCATTCCTTGATTA 57.264 40.909 0.00 0.00 0.00 1.75
1814 3163 4.686972 TCAGACGAGCATTCCTTGATTAG 58.313 43.478 0.00 0.00 0.00 1.73
1819 3168 6.546403 AGACGAGCATTCCTTGATTAGTACTA 59.454 38.462 0.00 0.00 0.00 1.82
1820 3169 6.740110 ACGAGCATTCCTTGATTAGTACTAG 58.260 40.000 2.23 0.00 0.00 2.57
1821 3170 6.321690 ACGAGCATTCCTTGATTAGTACTAGT 59.678 38.462 0.00 0.00 0.00 2.57
1822 3171 7.501559 ACGAGCATTCCTTGATTAGTACTAGTA 59.498 37.037 2.23 0.00 0.00 1.82
1823 3172 8.516234 CGAGCATTCCTTGATTAGTACTAGTAT 58.484 37.037 5.75 0.00 0.00 2.12
1855 3283 8.837788 TTCGAGATAATGTAATGCTGATGATT 57.162 30.769 0.00 0.00 0.00 2.57
1882 3310 5.794894 TCGAATAGCCTTCTTTGTCTTTCT 58.205 37.500 0.00 0.00 0.00 2.52
1953 3381 1.429463 GGCGAGTCTTGTTTCGACAT 58.571 50.000 0.00 0.00 44.11 3.06
2077 3505 1.758440 AACCTGAACTGCTGCGGAGA 61.758 55.000 16.72 0.00 0.00 3.71
2363 3791 1.699634 TCTTGGAAGGTCTTGTGGAGG 59.300 52.381 0.00 0.00 0.00 4.30
2364 3792 1.699634 CTTGGAAGGTCTTGTGGAGGA 59.300 52.381 0.00 0.00 0.00 3.71
2365 3793 1.352083 TGGAAGGTCTTGTGGAGGAG 58.648 55.000 0.00 0.00 0.00 3.69
2371 3799 0.687354 GTCTTGTGGAGGAGCCTTCA 59.313 55.000 0.00 0.00 37.63 3.02
2425 3853 2.205074 CATCTATGTGTGACCCTTCGC 58.795 52.381 0.00 0.00 0.00 4.70
2597 4198 4.286297 TGTTTACTCCCTTCATCCTGTG 57.714 45.455 0.00 0.00 0.00 3.66
2693 4294 7.222224 GGGAGTAGTATATTGTTGACTTGTTCG 59.778 40.741 0.00 0.00 0.00 3.95
2702 4303 3.935828 TGTTGACTTGTTCGTGTCATTCA 59.064 39.130 0.00 0.00 41.93 2.57
2745 4346 8.697507 ACCAAGACTATTCATATGAAAATCCC 57.302 34.615 21.50 10.26 37.61 3.85
2787 4391 7.840342 ACTGCACTACTAAGAGATTTTCATG 57.160 36.000 0.00 0.00 0.00 3.07
2792 4396 8.171840 GCACTACTAAGAGATTTTCATGTGAAC 58.828 37.037 0.00 0.00 33.13 3.18
2793 4397 9.208022 CACTACTAAGAGATTTTCATGTGAACA 57.792 33.333 0.00 0.00 33.13 3.18
2796 4400 8.908786 ACTAAGAGATTTTCATGTGAACAAGA 57.091 30.769 0.00 0.00 33.13 3.02
2797 4401 9.342308 ACTAAGAGATTTTCATGTGAACAAGAA 57.658 29.630 0.00 0.00 32.54 2.52
2821 4425 5.579564 TTTTTACACCTTGGTTTACGCTT 57.420 34.783 0.00 0.00 0.00 4.68
2823 4427 6.690194 TTTTACACCTTGGTTTACGCTTAA 57.310 33.333 0.00 0.00 0.00 1.85
2824 4428 5.671742 TTACACCTTGGTTTACGCTTAAC 57.328 39.130 0.00 0.00 0.00 2.01
2825 4429 3.812262 ACACCTTGGTTTACGCTTAACT 58.188 40.909 0.00 0.00 0.00 2.24
2826 4430 3.562557 ACACCTTGGTTTACGCTTAACTG 59.437 43.478 0.00 0.00 0.00 3.16
2827 4431 3.810941 CACCTTGGTTTACGCTTAACTGA 59.189 43.478 0.00 0.00 0.00 3.41
2828 4432 4.273969 CACCTTGGTTTACGCTTAACTGAA 59.726 41.667 0.00 0.00 0.00 3.02
2829 4433 5.048991 CACCTTGGTTTACGCTTAACTGAAT 60.049 40.000 0.00 0.00 0.00 2.57
2830 4434 6.148150 CACCTTGGTTTACGCTTAACTGAATA 59.852 38.462 0.00 0.00 0.00 1.75
2831 4435 6.370718 ACCTTGGTTTACGCTTAACTGAATAG 59.629 38.462 0.00 0.00 0.00 1.73
2832 4436 6.370718 CCTTGGTTTACGCTTAACTGAATAGT 59.629 38.462 0.00 0.00 39.32 2.12
2833 4437 7.546667 CCTTGGTTTACGCTTAACTGAATAGTA 59.453 37.037 0.00 0.00 35.69 1.82
2834 4438 8.470040 TTGGTTTACGCTTAACTGAATAGTAG 57.530 34.615 0.00 0.00 35.69 2.57
2835 4439 7.605449 TGGTTTACGCTTAACTGAATAGTAGT 58.395 34.615 0.00 0.00 35.69 2.73
2836 4440 7.543172 TGGTTTACGCTTAACTGAATAGTAGTG 59.457 37.037 0.00 0.00 35.69 2.74
2837 4441 7.543520 GGTTTACGCTTAACTGAATAGTAGTGT 59.456 37.037 0.00 0.00 38.83 3.55
2838 4442 8.371053 GTTTACGCTTAACTGAATAGTAGTGTG 58.629 37.037 0.00 0.00 37.04 3.82
2839 4443 6.022163 ACGCTTAACTGAATAGTAGTGTGT 57.978 37.500 0.00 0.00 35.80 3.72
2840 4444 6.091437 ACGCTTAACTGAATAGTAGTGTGTC 58.909 40.000 0.00 0.00 35.80 3.67
2841 4445 5.227391 CGCTTAACTGAATAGTAGTGTGTCG 59.773 44.000 0.00 0.00 35.69 4.35
2842 4446 6.091437 GCTTAACTGAATAGTAGTGTGTCGT 58.909 40.000 0.00 0.00 35.69 4.34
2843 4447 6.250951 GCTTAACTGAATAGTAGTGTGTCGTC 59.749 42.308 0.00 0.00 35.69 4.20
2844 4448 5.700722 AACTGAATAGTAGTGTGTCGTCA 57.299 39.130 0.00 0.00 35.69 4.35
2845 4449 5.700722 ACTGAATAGTAGTGTGTCGTCAA 57.299 39.130 0.00 0.00 34.74 3.18
2846 4450 6.268825 ACTGAATAGTAGTGTGTCGTCAAT 57.731 37.500 0.00 0.00 34.74 2.57
2847 4451 6.093404 ACTGAATAGTAGTGTGTCGTCAATG 58.907 40.000 0.00 0.00 34.74 2.82
2848 4452 6.072119 ACTGAATAGTAGTGTGTCGTCAATGA 60.072 38.462 0.00 0.00 34.74 2.57
2849 4453 6.683715 TGAATAGTAGTGTGTCGTCAATGAA 58.316 36.000 0.00 0.00 0.00 2.57
2850 4454 7.149307 TGAATAGTAGTGTGTCGTCAATGAAA 58.851 34.615 0.00 0.00 0.00 2.69
2851 4455 7.654116 TGAATAGTAGTGTGTCGTCAATGAAAA 59.346 33.333 0.00 0.00 0.00 2.29
2852 4456 7.956420 ATAGTAGTGTGTCGTCAATGAAAAA 57.044 32.000 0.00 0.00 0.00 1.94
2853 4457 6.044512 AGTAGTGTGTCGTCAATGAAAAAC 57.955 37.500 0.00 0.00 0.00 2.43
2854 4458 4.955925 AGTGTGTCGTCAATGAAAAACA 57.044 36.364 0.00 0.00 0.00 2.83
2855 4459 5.303747 AGTGTGTCGTCAATGAAAAACAA 57.696 34.783 0.00 0.00 0.00 2.83
2856 4460 5.331902 AGTGTGTCGTCAATGAAAAACAAG 58.668 37.500 0.00 0.00 0.00 3.16
2857 4461 5.092781 GTGTGTCGTCAATGAAAAACAAGT 58.907 37.500 0.00 0.00 0.00 3.16
2858 4462 5.571357 GTGTGTCGTCAATGAAAAACAAGTT 59.429 36.000 0.00 0.00 0.00 2.66
2859 4463 6.088883 GTGTGTCGTCAATGAAAAACAAGTTT 59.911 34.615 0.00 0.00 0.00 2.66
2860 4464 6.642950 TGTGTCGTCAATGAAAAACAAGTTTT 59.357 30.769 5.16 5.16 43.88 2.43
2861 4465 7.808381 TGTGTCGTCAATGAAAAACAAGTTTTA 59.192 29.630 10.95 0.00 41.45 1.52
2862 4466 8.099704 GTGTCGTCAATGAAAAACAAGTTTTAC 58.900 33.333 10.95 4.51 41.45 2.01
2863 4467 7.007546 TGTCGTCAATGAAAAACAAGTTTTACG 59.992 33.333 16.71 16.71 41.45 3.18
2864 4468 7.007636 GTCGTCAATGAAAAACAAGTTTTACGT 59.992 33.333 19.68 0.00 41.45 3.57
2865 4469 7.007546 TCGTCAATGAAAAACAAGTTTTACGTG 59.992 33.333 19.68 12.85 41.45 4.49
2866 4470 7.007546 CGTCAATGAAAAACAAGTTTTACGTGA 59.992 33.333 10.95 9.53 41.45 4.35
2867 4471 8.803799 GTCAATGAAAAACAAGTTTTACGTGAT 58.196 29.630 10.95 0.00 41.45 3.06
2868 4472 9.015577 TCAATGAAAAACAAGTTTTACGTGATC 57.984 29.630 10.95 5.29 41.45 2.92
2869 4473 7.603297 ATGAAAAACAAGTTTTACGTGATCG 57.397 32.000 10.95 0.00 41.45 3.69
2870 4474 6.773080 TGAAAAACAAGTTTTACGTGATCGA 58.227 32.000 10.95 0.00 41.45 3.59
2871 4475 6.683708 TGAAAAACAAGTTTTACGTGATCGAC 59.316 34.615 10.95 0.00 41.45 4.20
2882 4486 6.656314 TTACGTGATCGACAAATGCTAAAT 57.344 33.333 0.00 0.00 40.62 1.40
2889 4493 5.837586 TCGACAAATGCTAAATTTTTGGC 57.162 34.783 0.00 4.61 43.86 4.52
2947 4551 4.079253 GGACTTTCCACCTAAGCATTTGA 58.921 43.478 0.00 0.00 36.28 2.69
2961 4565 9.956720 CCTAAGCATTTGAAGATAACATTTAGG 57.043 33.333 0.00 0.00 0.00 2.69
2965 4569 9.905713 AGCATTTGAAGATAACATTTAGGAGTA 57.094 29.630 0.00 0.00 0.00 2.59
3066 4677 3.383505 GCCAAATTGGGTATCCAGGTAAC 59.616 47.826 14.59 0.00 45.04 2.50
3077 4688 2.543635 TCCAGGTAACACCCTACTTCC 58.456 52.381 0.00 0.00 39.75 3.46
3108 4719 4.261447 GGCGGATTGTATTGTTGGTATTCC 60.261 45.833 0.00 0.00 0.00 3.01
3173 4784 5.334421 ACTCTCTAGGGTTTGTGTGTCTAT 58.666 41.667 0.00 0.00 0.00 1.98
3197 4808 3.059597 GGAACATGAGAACACACTGAACG 60.060 47.826 0.00 0.00 0.00 3.95
3201 4812 0.602905 GAGAACACACTGAACGGGGG 60.603 60.000 0.00 0.00 0.00 5.40
3246 4857 2.681848 CGTGGTAGGATACGTGACTCTT 59.318 50.000 0.00 0.00 44.28 2.85
3287 4898 3.696051 GGATGAGCTATGCCACTCAAAAA 59.304 43.478 0.00 0.00 45.49 1.94
3351 4962 4.496336 AAGCGCAGGAGGATGGCC 62.496 66.667 11.47 0.00 0.00 5.36
3372 4983 2.825836 GCTGGGCGTCATCAAGGG 60.826 66.667 0.00 0.00 0.00 3.95
3382 4993 1.221840 CATCAAGGGCGTGCTACCT 59.778 57.895 0.00 0.00 39.21 3.08
3402 5013 1.985159 TGGTTGATCCTGCCAGTAGTT 59.015 47.619 0.00 0.00 37.07 2.24
3412 5023 4.408921 TCCTGCCAGTAGTTATATGCTTGT 59.591 41.667 0.00 0.00 0.00 3.16
3426 5037 9.657121 GTTATATGCTTGTCTCAAAGATTAAGC 57.343 33.333 15.90 15.90 42.47 3.09
3437 5048 5.332743 TCAAAGATTAAGCCATCCCTGTTT 58.667 37.500 0.00 0.00 0.00 2.83
3477 5092 0.625849 AGGGTTACATGAGCTTGGGG 59.374 55.000 0.00 0.00 0.00 4.96
3502 5117 4.361420 GTTTACAAGCGGATCTCCTAGTC 58.639 47.826 0.00 0.00 0.00 2.59
3503 5118 1.025812 ACAAGCGGATCTCCTAGTCG 58.974 55.000 0.00 0.00 0.00 4.18
3582 5197 4.501071 CGTTAACAGTACTTGGGTGCTAT 58.499 43.478 6.39 0.00 36.28 2.97
3593 5208 3.480505 TGGGTGCTATGTCATCATCAG 57.519 47.619 0.00 0.00 35.70 2.90
3599 5214 5.359756 GTGCTATGTCATCATCAGTACCAA 58.640 41.667 0.00 0.00 35.70 3.67
3603 5218 3.595173 TGTCATCATCAGTACCAAACGG 58.405 45.455 0.00 0.00 0.00 4.44
3710 5325 2.414559 CGCCATTGTTGCTTGTAGGAAG 60.415 50.000 0.00 0.00 0.00 3.46
3740 5355 2.026262 GGGCTCATAAAACTCCTGTGGA 60.026 50.000 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
320 323 9.017509 AGACATGAGTTGTTATTTGATCAATGT 57.982 29.630 9.40 5.82 39.18 2.71
396 399 8.123639 AGACAAACATAGTGTCACTAGTATGT 57.876 34.615 17.43 14.65 46.44 2.29
546 549 2.799917 GCGCTCATCGTTTACATCTCCT 60.800 50.000 0.00 0.00 41.07 3.69
551 554 2.117137 CGTAGCGCTCATCGTTTACAT 58.883 47.619 16.34 0.00 41.07 2.29
567 570 3.154473 TGCCTAGCCCCAGCGTAG 61.154 66.667 0.00 0.00 46.67 3.51
568 571 3.467226 GTGCCTAGCCCCAGCGTA 61.467 66.667 0.00 0.00 46.67 4.42
571 574 4.047125 TTGGTGCCTAGCCCCAGC 62.047 66.667 0.00 0.00 40.32 4.85
572 575 2.044946 GTTGGTGCCTAGCCCCAG 60.045 66.667 0.00 0.00 0.00 4.45
573 576 4.028490 CGTTGGTGCCTAGCCCCA 62.028 66.667 0.00 0.00 0.00 4.96
574 577 3.682292 CTCGTTGGTGCCTAGCCCC 62.682 68.421 0.00 0.00 0.00 5.80
575 578 2.125106 CTCGTTGGTGCCTAGCCC 60.125 66.667 0.00 0.00 0.00 5.19
576 579 2.820037 GCTCGTTGGTGCCTAGCC 60.820 66.667 0.00 0.00 0.00 3.93
577 580 2.047274 TGCTCGTTGGTGCCTAGC 60.047 61.111 0.00 0.00 31.76 3.42
578 581 2.103042 GCTGCTCGTTGGTGCCTAG 61.103 63.158 0.00 0.00 31.76 3.02
579 582 2.047274 GCTGCTCGTTGGTGCCTA 60.047 61.111 0.00 0.00 31.76 3.93
582 585 3.730761 CAGGCTGCTCGTTGGTGC 61.731 66.667 0.00 0.00 0.00 5.01
583 586 2.809861 ATCCAGGCTGCTCGTTGGTG 62.810 60.000 9.56 0.00 0.00 4.17
584 587 2.527951 GATCCAGGCTGCTCGTTGGT 62.528 60.000 9.56 0.00 0.00 3.67
585 588 1.817099 GATCCAGGCTGCTCGTTGG 60.817 63.158 9.56 3.32 0.00 3.77
586 589 1.088340 CAGATCCAGGCTGCTCGTTG 61.088 60.000 9.56 0.00 0.00 4.10
587 590 1.220206 CAGATCCAGGCTGCTCGTT 59.780 57.895 9.56 0.00 0.00 3.85
588 591 1.674764 CTCAGATCCAGGCTGCTCGT 61.675 60.000 9.56 0.00 33.45 4.18
589 592 1.067749 CTCAGATCCAGGCTGCTCG 59.932 63.158 9.56 5.17 33.45 5.03
590 593 0.390124 CTCTCAGATCCAGGCTGCTC 59.610 60.000 9.56 8.07 33.45 4.26
591 594 1.688269 GCTCTCAGATCCAGGCTGCT 61.688 60.000 9.56 0.00 33.45 4.24
592 595 1.227615 GCTCTCAGATCCAGGCTGC 60.228 63.158 9.56 0.00 33.45 5.25
593 596 1.067749 CGCTCTCAGATCCAGGCTG 59.932 63.158 7.75 7.75 34.71 4.85
594 597 2.132996 CCGCTCTCAGATCCAGGCT 61.133 63.158 0.00 0.00 0.00 4.58
595 598 2.420890 CCGCTCTCAGATCCAGGC 59.579 66.667 0.00 0.00 0.00 4.85
596 599 2.506061 CCCCGCTCTCAGATCCAGG 61.506 68.421 0.00 0.00 0.00 4.45
597 600 2.506061 CCCCCGCTCTCAGATCCAG 61.506 68.421 0.00 0.00 0.00 3.86
598 601 2.444706 CCCCCGCTCTCAGATCCA 60.445 66.667 0.00 0.00 0.00 3.41
599 602 3.934962 GCCCCCGCTCTCAGATCC 61.935 72.222 0.00 0.00 0.00 3.36
600 603 4.292178 CGCCCCCGCTCTCAGATC 62.292 72.222 0.00 0.00 0.00 2.75
612 615 3.541713 ATCTCCTCTTCGCGCCCC 61.542 66.667 0.00 0.00 0.00 5.80
613 616 2.279784 CATCTCCTCTTCGCGCCC 60.280 66.667 0.00 0.00 0.00 6.13
614 617 1.299773 CTCATCTCCTCTTCGCGCC 60.300 63.158 0.00 0.00 0.00 6.53
615 618 1.948635 GCTCATCTCCTCTTCGCGC 60.949 63.158 0.00 0.00 0.00 6.86
616 619 0.594540 CTGCTCATCTCCTCTTCGCG 60.595 60.000 0.00 0.00 0.00 5.87
617 620 0.459489 ACTGCTCATCTCCTCTTCGC 59.541 55.000 0.00 0.00 0.00 4.70
618 621 1.202394 CCACTGCTCATCTCCTCTTCG 60.202 57.143 0.00 0.00 0.00 3.79
619 622 1.473080 GCCACTGCTCATCTCCTCTTC 60.473 57.143 0.00 0.00 33.53 2.87
620 623 0.540923 GCCACTGCTCATCTCCTCTT 59.459 55.000 0.00 0.00 33.53 2.85
621 624 1.674764 CGCCACTGCTCATCTCCTCT 61.675 60.000 0.00 0.00 34.43 3.69
622 625 1.227205 CGCCACTGCTCATCTCCTC 60.227 63.158 0.00 0.00 34.43 3.71
623 626 2.729479 CCGCCACTGCTCATCTCCT 61.729 63.158 0.00 0.00 34.43 3.69
624 627 2.202987 CCGCCACTGCTCATCTCC 60.203 66.667 0.00 0.00 34.43 3.71
625 628 2.894387 GCCGCCACTGCTCATCTC 60.894 66.667 0.00 0.00 34.43 2.75
626 629 4.827087 CGCCGCCACTGCTCATCT 62.827 66.667 0.00 0.00 34.43 2.90
640 643 4.221422 TAGGCCATCGTGAGCGCC 62.221 66.667 5.01 0.00 41.96 6.53
641 644 2.659897 CTAGGCCATCGTGAGCGC 60.660 66.667 5.01 0.00 38.14 5.92
642 645 2.028190 CCTAGGCCATCGTGAGCG 59.972 66.667 5.01 0.00 39.92 5.03
643 646 2.423446 CCCTAGGCCATCGTGAGC 59.577 66.667 5.01 0.00 0.00 4.26
644 647 1.443407 CACCCTAGGCCATCGTGAG 59.557 63.158 5.01 0.00 0.00 3.51
645 648 2.731571 GCACCCTAGGCCATCGTGA 61.732 63.158 16.60 0.00 0.00 4.35
646 649 2.203070 GCACCCTAGGCCATCGTG 60.203 66.667 5.01 7.01 0.00 4.35
656 659 0.613853 ACGCTGTTCTAGGCACCCTA 60.614 55.000 0.00 0.00 34.61 3.53
657 660 1.913762 ACGCTGTTCTAGGCACCCT 60.914 57.895 0.00 0.00 37.71 4.34
658 661 1.741770 CACGCTGTTCTAGGCACCC 60.742 63.158 0.00 0.00 0.00 4.61
659 662 0.108138 ATCACGCTGTTCTAGGCACC 60.108 55.000 0.00 0.00 0.00 5.01
660 663 1.002366 CATCACGCTGTTCTAGGCAC 58.998 55.000 0.00 0.00 0.00 5.01
661 664 0.108186 CCATCACGCTGTTCTAGGCA 60.108 55.000 0.00 0.00 0.00 4.75
662 665 1.432270 GCCATCACGCTGTTCTAGGC 61.432 60.000 0.00 0.00 0.00 3.93
663 666 1.148157 CGCCATCACGCTGTTCTAGG 61.148 60.000 0.00 0.00 0.00 3.02
664 667 1.148157 CCGCCATCACGCTGTTCTAG 61.148 60.000 0.00 0.00 0.00 2.43
665 668 1.153647 CCGCCATCACGCTGTTCTA 60.154 57.895 0.00 0.00 0.00 2.10
666 669 2.434884 CCGCCATCACGCTGTTCT 60.435 61.111 0.00 0.00 0.00 3.01
667 670 4.166011 GCCGCCATCACGCTGTTC 62.166 66.667 0.00 0.00 0.00 3.18
679 682 4.752879 TTACCAGCAGTCGCCGCC 62.753 66.667 0.00 0.00 39.83 6.13
680 683 3.188786 CTTACCAGCAGTCGCCGC 61.189 66.667 0.00 0.00 39.83 6.53
681 684 1.374252 AACTTACCAGCAGTCGCCG 60.374 57.895 0.00 0.00 39.83 6.46
682 685 0.320421 TCAACTTACCAGCAGTCGCC 60.320 55.000 0.00 0.00 39.83 5.54
683 686 1.071605 CTCAACTTACCAGCAGTCGC 58.928 55.000 0.00 0.00 38.99 5.19
684 687 1.272490 TCCTCAACTTACCAGCAGTCG 59.728 52.381 0.00 0.00 0.00 4.18
685 688 3.526534 GATCCTCAACTTACCAGCAGTC 58.473 50.000 0.00 0.00 0.00 3.51
686 689 2.093973 CGATCCTCAACTTACCAGCAGT 60.094 50.000 0.00 0.00 0.00 4.40
687 690 2.166459 TCGATCCTCAACTTACCAGCAG 59.834 50.000 0.00 0.00 0.00 4.24
688 691 2.166459 CTCGATCCTCAACTTACCAGCA 59.834 50.000 0.00 0.00 0.00 4.41
689 692 2.482142 CCTCGATCCTCAACTTACCAGC 60.482 54.545 0.00 0.00 0.00 4.85
690 693 2.101582 CCCTCGATCCTCAACTTACCAG 59.898 54.545 0.00 0.00 0.00 4.00
691 694 2.108168 CCCTCGATCCTCAACTTACCA 58.892 52.381 0.00 0.00 0.00 3.25
692 695 2.362717 CTCCCTCGATCCTCAACTTACC 59.637 54.545 0.00 0.00 0.00 2.85
693 696 3.288964 TCTCCCTCGATCCTCAACTTAC 58.711 50.000 0.00 0.00 0.00 2.34
694 697 3.556999 CTCTCCCTCGATCCTCAACTTA 58.443 50.000 0.00 0.00 0.00 2.24
695 698 2.383855 CTCTCCCTCGATCCTCAACTT 58.616 52.381 0.00 0.00 0.00 2.66
696 699 1.410932 CCTCTCCCTCGATCCTCAACT 60.411 57.143 0.00 0.00 0.00 3.16
697 700 1.036707 CCTCTCCCTCGATCCTCAAC 58.963 60.000 0.00 0.00 0.00 3.18
698 701 0.105964 CCCTCTCCCTCGATCCTCAA 60.106 60.000 0.00 0.00 0.00 3.02
699 702 0.994050 TCCCTCTCCCTCGATCCTCA 60.994 60.000 0.00 0.00 0.00 3.86
700 703 0.251165 CTCCCTCTCCCTCGATCCTC 60.251 65.000 0.00 0.00 0.00 3.71
701 704 1.725169 CCTCCCTCTCCCTCGATCCT 61.725 65.000 0.00 0.00 0.00 3.24
702 705 1.228737 CCTCCCTCTCCCTCGATCC 60.229 68.421 0.00 0.00 0.00 3.36
703 706 1.906333 GCCTCCCTCTCCCTCGATC 60.906 68.421 0.00 0.00 0.00 3.69
704 707 2.200092 GCCTCCCTCTCCCTCGAT 59.800 66.667 0.00 0.00 0.00 3.59
705 708 4.144727 GGCCTCCCTCTCCCTCGA 62.145 72.222 0.00 0.00 0.00 4.04
706 709 4.465446 TGGCCTCCCTCTCCCTCG 62.465 72.222 3.32 0.00 0.00 4.63
707 710 2.445654 CTGGCCTCCCTCTCCCTC 60.446 72.222 3.32 0.00 0.00 4.30
708 711 2.955246 TCTGGCCTCCCTCTCCCT 60.955 66.667 3.32 0.00 0.00 4.20
709 712 2.445654 CTCTGGCCTCCCTCTCCC 60.446 72.222 3.32 0.00 0.00 4.30
710 713 2.445654 CCTCTGGCCTCCCTCTCC 60.446 72.222 3.32 0.00 0.00 3.71
711 714 3.160748 GCCTCTGGCCTCCCTCTC 61.161 72.222 3.32 0.00 44.06 3.20
747 750 1.300931 CCGTCCCATCATGGCGTAG 60.301 63.158 0.00 0.00 35.79 3.51
748 751 2.802724 CCCGTCCCATCATGGCGTA 61.803 63.158 0.00 0.00 35.79 4.42
749 752 4.175337 CCCGTCCCATCATGGCGT 62.175 66.667 0.00 0.00 35.79 5.68
750 753 4.935495 CCCCGTCCCATCATGGCG 62.935 72.222 0.00 0.00 35.79 5.69
751 754 4.586235 CCCCCGTCCCATCATGGC 62.586 72.222 0.00 0.00 35.79 4.40
765 768 2.524394 TCTCCTATCAGCGCCCCC 60.524 66.667 2.29 0.00 0.00 5.40
766 769 0.902516 ATCTCTCCTATCAGCGCCCC 60.903 60.000 2.29 0.00 0.00 5.80
767 770 0.246086 CATCTCTCCTATCAGCGCCC 59.754 60.000 2.29 0.00 0.00 6.13
768 771 1.202114 CTCATCTCTCCTATCAGCGCC 59.798 57.143 2.29 0.00 0.00 6.53
769 772 2.158559 TCTCATCTCTCCTATCAGCGC 58.841 52.381 0.00 0.00 0.00 5.92
770 773 3.673902 TCTCTCATCTCTCCTATCAGCG 58.326 50.000 0.00 0.00 0.00 5.18
771 774 4.910195 TCTCTCTCATCTCTCCTATCAGC 58.090 47.826 0.00 0.00 0.00 4.26
772 775 6.169094 GTCTCTCTCTCATCTCTCCTATCAG 58.831 48.000 0.00 0.00 0.00 2.90
773 776 5.279456 CGTCTCTCTCTCATCTCTCCTATCA 60.279 48.000 0.00 0.00 0.00 2.15
774 777 5.171476 CGTCTCTCTCTCATCTCTCCTATC 58.829 50.000 0.00 0.00 0.00 2.08
775 778 4.593206 ACGTCTCTCTCTCATCTCTCCTAT 59.407 45.833 0.00 0.00 0.00 2.57
776 779 3.964688 ACGTCTCTCTCTCATCTCTCCTA 59.035 47.826 0.00 0.00 0.00 2.94
777 780 2.771943 ACGTCTCTCTCTCATCTCTCCT 59.228 50.000 0.00 0.00 0.00 3.69
778 781 3.194005 ACGTCTCTCTCTCATCTCTCC 57.806 52.381 0.00 0.00 0.00 3.71
779 782 3.245284 CGAACGTCTCTCTCTCATCTCTC 59.755 52.174 0.00 0.00 0.00 3.20
780 783 3.118920 TCGAACGTCTCTCTCTCATCTCT 60.119 47.826 0.00 0.00 0.00 3.10
781 784 3.000925 GTCGAACGTCTCTCTCTCATCTC 59.999 52.174 0.00 0.00 0.00 2.75
782 785 2.933906 GTCGAACGTCTCTCTCTCATCT 59.066 50.000 0.00 0.00 0.00 2.90
783 786 2.285371 CGTCGAACGTCTCTCTCTCATC 60.285 54.545 0.00 0.00 36.74 2.92
784 787 1.661617 CGTCGAACGTCTCTCTCTCAT 59.338 52.381 0.00 0.00 36.74 2.90
785 788 1.069255 CGTCGAACGTCTCTCTCTCA 58.931 55.000 0.00 0.00 36.74 3.27
786 789 0.370958 CCGTCGAACGTCTCTCTCTC 59.629 60.000 0.00 0.00 40.58 3.20
787 790 1.637478 GCCGTCGAACGTCTCTCTCT 61.637 60.000 0.00 0.00 40.58 3.10
788 791 1.226073 GCCGTCGAACGTCTCTCTC 60.226 63.158 0.00 0.00 40.58 3.20
789 792 1.306642 ATGCCGTCGAACGTCTCTCT 61.307 55.000 0.00 0.00 40.58 3.10
790 793 1.134530 CATGCCGTCGAACGTCTCTC 61.135 60.000 0.00 0.00 40.58 3.20
791 794 1.154016 CATGCCGTCGAACGTCTCT 60.154 57.895 0.00 0.00 40.58 3.10
792 795 2.158959 CCATGCCGTCGAACGTCTC 61.159 63.158 0.00 0.00 40.58 3.36
793 796 2.126071 CCATGCCGTCGAACGTCT 60.126 61.111 0.00 0.00 40.58 4.18
794 797 3.186047 CCCATGCCGTCGAACGTC 61.186 66.667 0.00 0.00 40.58 4.34
795 798 4.752879 CCCCATGCCGTCGAACGT 62.753 66.667 0.00 0.00 40.58 3.99
796 799 4.444838 TCCCCATGCCGTCGAACG 62.445 66.667 0.00 0.00 42.11 3.95
797 800 2.511600 CTCCCCATGCCGTCGAAC 60.512 66.667 0.00 0.00 0.00 3.95
798 801 1.832719 TTTCTCCCCATGCCGTCGAA 61.833 55.000 0.00 0.00 0.00 3.71
799 802 2.238847 CTTTCTCCCCATGCCGTCGA 62.239 60.000 0.00 0.00 0.00 4.20
800 803 1.815421 CTTTCTCCCCATGCCGTCG 60.815 63.158 0.00 0.00 0.00 5.12
801 804 2.115291 GCTTTCTCCCCATGCCGTC 61.115 63.158 0.00 0.00 0.00 4.79
802 805 1.271840 TAGCTTTCTCCCCATGCCGT 61.272 55.000 0.00 0.00 0.00 5.68
803 806 0.107214 TTAGCTTTCTCCCCATGCCG 60.107 55.000 0.00 0.00 0.00 5.69
804 807 1.751351 GTTTAGCTTTCTCCCCATGCC 59.249 52.381 0.00 0.00 0.00 4.40
805 808 1.401905 CGTTTAGCTTTCTCCCCATGC 59.598 52.381 0.00 0.00 0.00 4.06
806 809 2.017049 CCGTTTAGCTTTCTCCCCATG 58.983 52.381 0.00 0.00 0.00 3.66
807 810 1.913419 TCCGTTTAGCTTTCTCCCCAT 59.087 47.619 0.00 0.00 0.00 4.00
808 811 1.002773 GTCCGTTTAGCTTTCTCCCCA 59.997 52.381 0.00 0.00 0.00 4.96
809 812 1.735386 GTCCGTTTAGCTTTCTCCCC 58.265 55.000 0.00 0.00 0.00 4.81
810 813 1.337541 ACGTCCGTTTAGCTTTCTCCC 60.338 52.381 0.00 0.00 0.00 4.30
811 814 2.075979 ACGTCCGTTTAGCTTTCTCC 57.924 50.000 0.00 0.00 0.00 3.71
812 815 4.088823 TCTACGTCCGTTTAGCTTTCTC 57.911 45.455 0.00 0.00 0.00 2.87
813 816 4.510038 TTCTACGTCCGTTTAGCTTTCT 57.490 40.909 0.00 0.00 0.00 2.52
814 817 5.050837 TGTTTTCTACGTCCGTTTAGCTTTC 60.051 40.000 0.00 0.00 0.00 2.62
815 818 4.810491 TGTTTTCTACGTCCGTTTAGCTTT 59.190 37.500 0.00 0.00 0.00 3.51
816 819 4.370917 TGTTTTCTACGTCCGTTTAGCTT 58.629 39.130 0.00 0.00 0.00 3.74
817 820 3.981211 TGTTTTCTACGTCCGTTTAGCT 58.019 40.909 0.00 0.00 0.00 3.32
818 821 4.713854 TTGTTTTCTACGTCCGTTTAGC 57.286 40.909 0.00 0.00 0.00 3.09
821 824 8.445493 CCTATAAATTGTTTTCTACGTCCGTTT 58.555 33.333 0.00 0.00 0.00 3.60
822 825 7.818930 TCCTATAAATTGTTTTCTACGTCCGTT 59.181 33.333 0.00 0.00 0.00 4.44
823 826 7.276438 GTCCTATAAATTGTTTTCTACGTCCGT 59.724 37.037 0.00 0.00 0.00 4.69
824 827 7.254218 GGTCCTATAAATTGTTTTCTACGTCCG 60.254 40.741 0.00 0.00 0.00 4.79
825 828 7.254218 CGGTCCTATAAATTGTTTTCTACGTCC 60.254 40.741 0.00 0.00 0.00 4.79
826 829 7.254218 CCGGTCCTATAAATTGTTTTCTACGTC 60.254 40.741 0.00 0.00 0.00 4.34
827 830 6.536224 CCGGTCCTATAAATTGTTTTCTACGT 59.464 38.462 0.00 0.00 0.00 3.57
828 831 6.757947 TCCGGTCCTATAAATTGTTTTCTACG 59.242 38.462 0.00 0.00 0.00 3.51
829 832 8.496707 TTCCGGTCCTATAAATTGTTTTCTAC 57.503 34.615 0.00 0.00 0.00 2.59
830 833 9.517868 TTTTCCGGTCCTATAAATTGTTTTCTA 57.482 29.630 0.00 0.00 0.00 2.10
831 834 8.411991 TTTTCCGGTCCTATAAATTGTTTTCT 57.588 30.769 0.00 0.00 0.00 2.52
854 857 1.272769 CTCTCCTCCCGTCTCGTTTTT 59.727 52.381 0.00 0.00 0.00 1.94
855 858 0.889306 CTCTCCTCCCGTCTCGTTTT 59.111 55.000 0.00 0.00 0.00 2.43
856 859 1.596895 GCTCTCCTCCCGTCTCGTTT 61.597 60.000 0.00 0.00 0.00 3.60
857 860 2.047443 GCTCTCCTCCCGTCTCGTT 61.047 63.158 0.00 0.00 0.00 3.85
858 861 2.438795 GCTCTCCTCCCGTCTCGT 60.439 66.667 0.00 0.00 0.00 4.18
859 862 3.578272 CGCTCTCCTCCCGTCTCG 61.578 72.222 0.00 0.00 0.00 4.04
860 863 2.124653 TCGCTCTCCTCCCGTCTC 60.125 66.667 0.00 0.00 0.00 3.36
861 864 2.124487 CTCGCTCTCCTCCCGTCT 60.124 66.667 0.00 0.00 0.00 4.18
862 865 3.894947 GCTCGCTCTCCTCCCGTC 61.895 72.222 0.00 0.00 0.00 4.79
866 869 3.894947 GTCCGCTCGCTCTCCTCC 61.895 72.222 0.00 0.00 0.00 4.30
867 870 4.244802 CGTCCGCTCGCTCTCCTC 62.245 72.222 0.00 0.00 0.00 3.71
868 871 4.779966 TCGTCCGCTCGCTCTCCT 62.780 66.667 0.00 0.00 0.00 3.69
869 872 3.743091 CTTCGTCCGCTCGCTCTCC 62.743 68.421 0.00 0.00 0.00 3.71
870 873 2.254703 TTCTTCGTCCGCTCGCTCTC 62.255 60.000 0.00 0.00 0.00 3.20
871 874 1.658686 ATTCTTCGTCCGCTCGCTCT 61.659 55.000 0.00 0.00 0.00 4.09
872 875 1.226717 ATTCTTCGTCCGCTCGCTC 60.227 57.895 0.00 0.00 0.00 5.03
873 876 1.517257 CATTCTTCGTCCGCTCGCT 60.517 57.895 0.00 0.00 0.00 4.93
874 877 1.475441 CTCATTCTTCGTCCGCTCGC 61.475 60.000 0.00 0.00 0.00 5.03
875 878 0.867753 CCTCATTCTTCGTCCGCTCG 60.868 60.000 0.00 0.00 0.00 5.03
876 879 1.148759 GCCTCATTCTTCGTCCGCTC 61.149 60.000 0.00 0.00 0.00 5.03
877 880 1.153549 GCCTCATTCTTCGTCCGCT 60.154 57.895 0.00 0.00 0.00 5.52
878 881 1.424493 CTGCCTCATTCTTCGTCCGC 61.424 60.000 0.00 0.00 0.00 5.54
879 882 0.173481 TCTGCCTCATTCTTCGTCCG 59.827 55.000 0.00 0.00 0.00 4.79
880 883 2.003301 GTTCTGCCTCATTCTTCGTCC 58.997 52.381 0.00 0.00 0.00 4.79
881 884 2.688507 TGTTCTGCCTCATTCTTCGTC 58.311 47.619 0.00 0.00 0.00 4.20
882 885 2.839486 TGTTCTGCCTCATTCTTCGT 57.161 45.000 0.00 0.00 0.00 3.85
883 886 3.264947 TCATGTTCTGCCTCATTCTTCG 58.735 45.455 0.00 0.00 0.00 3.79
884 887 5.589452 AGAATCATGTTCTGCCTCATTCTTC 59.411 40.000 9.00 0.00 26.30 2.87
885 888 5.357314 CAGAATCATGTTCTGCCTCATTCTT 59.643 40.000 18.62 0.00 39.36 2.52
886 889 4.882427 CAGAATCATGTTCTGCCTCATTCT 59.118 41.667 18.62 8.99 39.36 2.40
887 890 5.171147 CAGAATCATGTTCTGCCTCATTC 57.829 43.478 18.62 7.26 39.36 2.67
907 910 2.604462 GTGTTGCTTTTTCTGCCAACAG 59.396 45.455 5.41 0.00 45.95 3.16
908 911 2.233431 AGTGTTGCTTTTTCTGCCAACA 59.767 40.909 0.00 0.00 33.05 3.33
909 912 2.892374 AGTGTTGCTTTTTCTGCCAAC 58.108 42.857 0.00 0.00 0.00 3.77
910 913 3.488384 CGTAGTGTTGCTTTTTCTGCCAA 60.488 43.478 0.00 0.00 0.00 4.52
911 914 2.032799 CGTAGTGTTGCTTTTTCTGCCA 59.967 45.455 0.00 0.00 0.00 4.92
912 915 2.032924 ACGTAGTGTTGCTTTTTCTGCC 59.967 45.455 0.00 0.00 42.51 4.85
913 916 3.334272 ACGTAGTGTTGCTTTTTCTGC 57.666 42.857 0.00 0.00 42.51 4.26
960 963 6.293244 GCATTAACCGTGTACATAGGAAATCC 60.293 42.308 22.22 10.78 0.00 3.01
961 964 6.563381 CGCATTAACCGTGTACATAGGAAATC 60.563 42.308 22.22 14.02 0.00 2.17
962 965 5.235616 CGCATTAACCGTGTACATAGGAAAT 59.764 40.000 22.22 17.44 0.00 2.17
963 966 4.567558 CGCATTAACCGTGTACATAGGAAA 59.432 41.667 22.22 16.35 0.00 3.13
964 967 4.114073 CGCATTAACCGTGTACATAGGAA 58.886 43.478 22.22 10.69 0.00 3.36
965 968 3.380954 TCGCATTAACCGTGTACATAGGA 59.619 43.478 22.22 5.34 0.00 2.94
966 969 3.708890 TCGCATTAACCGTGTACATAGG 58.291 45.455 16.02 16.02 0.00 2.57
967 970 4.603985 TCTCGCATTAACCGTGTACATAG 58.396 43.478 0.00 0.00 0.00 2.23
968 971 4.635833 TCTCGCATTAACCGTGTACATA 57.364 40.909 0.00 0.00 0.00 2.29
969 972 3.513680 TCTCGCATTAACCGTGTACAT 57.486 42.857 0.00 0.00 0.00 2.29
970 973 3.300852 TTCTCGCATTAACCGTGTACA 57.699 42.857 0.00 0.00 0.00 2.90
975 978 3.527533 TGCTATTTCTCGCATTAACCGT 58.472 40.909 0.00 0.00 0.00 4.83
1514 2862 3.030168 ATCGGCGCAACCATCCTCA 62.030 57.895 10.83 0.00 39.03 3.86
1548 2896 2.642139 CAGCAAGTGCCATCGAATTT 57.358 45.000 0.00 0.00 43.38 1.82
1763 3112 2.403259 CACACGCTCACACAGTATCAA 58.597 47.619 0.00 0.00 0.00 2.57
1782 3131 0.319900 GCTCGTCTGAAGTGAAGCCA 60.320 55.000 0.00 0.00 0.00 4.75
1785 3134 2.670414 GGAATGCTCGTCTGAAGTGAAG 59.330 50.000 0.00 0.00 0.00 3.02
1832 3259 7.332678 TGGAATCATCAGCATTACATTATCTCG 59.667 37.037 0.00 0.00 0.00 4.04
1833 3260 8.557592 TGGAATCATCAGCATTACATTATCTC 57.442 34.615 0.00 0.00 0.00 2.75
1855 3283 4.162320 AGACAAAGAAGGCTATTCGATGGA 59.838 41.667 0.00 0.00 0.00 3.41
1861 3289 7.440523 TTGAGAAAGACAAAGAAGGCTATTC 57.559 36.000 0.00 0.00 0.00 1.75
1882 3310 8.518430 TCTACCAAAGCAGCAATATAAATTGA 57.482 30.769 0.00 0.00 44.50 2.57
2077 3505 1.812571 GCCAACGAATGTGGAATGTCT 59.187 47.619 0.00 0.00 0.00 3.41
2363 3791 2.688794 GCTGCAGCTGTGAAGGCTC 61.689 63.158 31.33 0.00 38.03 4.70
2364 3792 2.672307 GCTGCAGCTGTGAAGGCT 60.672 61.111 31.33 0.00 41.07 4.58
2425 3853 7.856145 AGATGCAGGATTACACTAGAAAAAG 57.144 36.000 0.00 0.00 0.00 2.27
2647 4248 5.970289 TCCCTCAGTCTCACAATATAGGAT 58.030 41.667 0.00 0.00 0.00 3.24
2648 4249 5.103473 ACTCCCTCAGTCTCACAATATAGGA 60.103 44.000 0.00 0.00 0.00 2.94
2657 4258 6.773685 ACAATATACTACTCCCTCAGTCTCAC 59.226 42.308 0.00 0.00 36.43 3.51
2736 4337 6.183360 GCATCACATATGAACAGGGATTTTCA 60.183 38.462 10.38 0.00 38.69 2.69
2745 4346 5.340010 GCAGTAGCATCACATATGAACAG 57.660 43.478 10.38 0.00 38.69 3.16
2799 4403 5.579564 AAGCGTAAACCAAGGTGTAAAAA 57.420 34.783 0.00 0.00 0.00 1.94
2800 4404 6.318396 AGTTAAGCGTAAACCAAGGTGTAAAA 59.682 34.615 0.00 0.00 0.00 1.52
2802 4406 5.236911 CAGTTAAGCGTAAACCAAGGTGTAA 59.763 40.000 0.00 0.00 0.00 2.41
2803 4407 4.751098 CAGTTAAGCGTAAACCAAGGTGTA 59.249 41.667 0.00 0.00 0.00 2.90
2806 4410 4.075963 TCAGTTAAGCGTAAACCAAGGT 57.924 40.909 0.00 0.00 0.00 3.50
2807 4411 5.622770 ATTCAGTTAAGCGTAAACCAAGG 57.377 39.130 0.00 0.00 0.00 3.61
2810 4414 7.543172 CACTACTATTCAGTTAAGCGTAAACCA 59.457 37.037 0.00 0.00 36.14 3.67
2811 4415 7.543520 ACACTACTATTCAGTTAAGCGTAAACC 59.456 37.037 0.00 0.00 36.14 3.27
2812 4416 8.371053 CACACTACTATTCAGTTAAGCGTAAAC 58.629 37.037 0.00 0.00 36.14 2.01
2813 4417 8.084073 ACACACTACTATTCAGTTAAGCGTAAA 58.916 33.333 0.00 0.00 36.14 2.01
2814 4418 7.596494 ACACACTACTATTCAGTTAAGCGTAA 58.404 34.615 0.00 0.00 36.14 3.18
2815 4419 7.149569 ACACACTACTATTCAGTTAAGCGTA 57.850 36.000 0.00 0.00 36.14 4.42
2816 4420 6.022163 ACACACTACTATTCAGTTAAGCGT 57.978 37.500 0.00 0.00 36.14 5.07
2817 4421 5.227391 CGACACACTACTATTCAGTTAAGCG 59.773 44.000 0.00 0.00 36.14 4.68
2818 4422 6.091437 ACGACACACTACTATTCAGTTAAGC 58.909 40.000 0.00 0.00 36.14 3.09
2819 4423 7.303261 TGACGACACACTACTATTCAGTTAAG 58.697 38.462 0.00 0.00 36.14 1.85
2821 4425 6.806388 TGACGACACACTACTATTCAGTTA 57.194 37.500 0.00 0.00 36.14 2.24
2823 4427 5.700722 TTGACGACACACTACTATTCAGT 57.299 39.130 0.00 0.00 38.91 3.41
2824 4428 6.322491 TCATTGACGACACACTACTATTCAG 58.678 40.000 0.00 0.00 0.00 3.02
2825 4429 6.262193 TCATTGACGACACACTACTATTCA 57.738 37.500 0.00 0.00 0.00 2.57
2826 4430 7.576750 TTTCATTGACGACACACTACTATTC 57.423 36.000 0.00 0.00 0.00 1.75
2827 4431 7.956420 TTTTCATTGACGACACACTACTATT 57.044 32.000 0.00 0.00 0.00 1.73
2828 4432 7.439955 TGTTTTTCATTGACGACACACTACTAT 59.560 33.333 0.00 0.00 0.00 2.12
2829 4433 6.757478 TGTTTTTCATTGACGACACACTACTA 59.243 34.615 0.00 0.00 0.00 1.82
2830 4434 5.583061 TGTTTTTCATTGACGACACACTACT 59.417 36.000 0.00 0.00 0.00 2.57
2831 4435 5.802064 TGTTTTTCATTGACGACACACTAC 58.198 37.500 0.00 0.00 0.00 2.73
2832 4436 6.092944 ACTTGTTTTTCATTGACGACACACTA 59.907 34.615 0.00 0.00 0.00 2.74
2833 4437 4.955925 TGTTTTTCATTGACGACACACT 57.044 36.364 0.00 0.00 0.00 3.55
2834 4438 5.092781 ACTTGTTTTTCATTGACGACACAC 58.907 37.500 0.00 0.00 0.00 3.82
2835 4439 5.303747 ACTTGTTTTTCATTGACGACACA 57.696 34.783 0.00 0.00 0.00 3.72
2836 4440 6.626199 AAACTTGTTTTTCATTGACGACAC 57.374 33.333 0.00 0.00 0.00 3.67
2837 4441 7.007546 CGTAAAACTTGTTTTTCATTGACGACA 59.992 33.333 15.30 0.00 36.74 4.35
2838 4442 7.007636 ACGTAAAACTTGTTTTTCATTGACGAC 59.992 33.333 23.88 11.68 36.74 4.34
2839 4443 7.007546 CACGTAAAACTTGTTTTTCATTGACGA 59.992 33.333 23.88 3.68 36.74 4.20
2840 4444 7.007546 TCACGTAAAACTTGTTTTTCATTGACG 59.992 33.333 19.21 19.21 38.90 4.35
2841 4445 8.164058 TCACGTAAAACTTGTTTTTCATTGAC 57.836 30.769 15.30 6.92 38.43 3.18
2842 4446 8.918961 ATCACGTAAAACTTGTTTTTCATTGA 57.081 26.923 15.30 14.32 38.43 2.57
2843 4447 7.990499 CGATCACGTAAAACTTGTTTTTCATTG 59.010 33.333 15.30 10.60 38.43 2.82
2844 4448 7.911205 TCGATCACGTAAAACTTGTTTTTCATT 59.089 29.630 15.30 0.44 37.17 2.57
2845 4449 7.375017 GTCGATCACGTAAAACTTGTTTTTCAT 59.625 33.333 15.30 0.00 37.17 2.57
2846 4450 6.683708 GTCGATCACGTAAAACTTGTTTTTCA 59.316 34.615 15.30 0.00 37.17 2.69
2847 4451 6.683708 TGTCGATCACGTAAAACTTGTTTTTC 59.316 34.615 15.30 10.23 37.17 2.29
2848 4452 6.544622 TGTCGATCACGTAAAACTTGTTTTT 58.455 32.000 15.30 0.00 38.41 1.94
2849 4453 6.109320 TGTCGATCACGTAAAACTTGTTTT 57.891 33.333 14.63 14.63 40.69 2.43
2850 4454 5.721876 TGTCGATCACGTAAAACTTGTTT 57.278 34.783 0.00 0.00 40.69 2.83
2851 4455 5.721876 TTGTCGATCACGTAAAACTTGTT 57.278 34.783 0.00 0.00 40.69 2.83
2852 4456 5.721876 TTTGTCGATCACGTAAAACTTGT 57.278 34.783 0.00 0.00 40.69 3.16
2853 4457 5.058008 GCATTTGTCGATCACGTAAAACTTG 59.942 40.000 0.00 0.00 40.69 3.16
2854 4458 5.049680 AGCATTTGTCGATCACGTAAAACTT 60.050 36.000 0.00 0.00 40.69 2.66
2855 4459 4.451096 AGCATTTGTCGATCACGTAAAACT 59.549 37.500 0.00 0.00 40.69 2.66
2856 4460 4.708601 AGCATTTGTCGATCACGTAAAAC 58.291 39.130 0.00 0.00 40.69 2.43
2857 4461 6.469139 TTAGCATTTGTCGATCACGTAAAA 57.531 33.333 0.00 0.00 40.69 1.52
2858 4462 6.469139 TTTAGCATTTGTCGATCACGTAAA 57.531 33.333 0.00 0.00 40.69 2.01
2859 4463 6.656314 ATTTAGCATTTGTCGATCACGTAA 57.344 33.333 0.00 0.00 40.69 3.18
2860 4464 6.656314 AATTTAGCATTTGTCGATCACGTA 57.344 33.333 0.00 0.00 40.69 3.57
2861 4465 5.545658 AATTTAGCATTTGTCGATCACGT 57.454 34.783 0.00 0.00 40.69 4.49
2862 4466 6.853279 AAAATTTAGCATTTGTCGATCACG 57.147 33.333 0.00 0.00 41.26 4.35
2863 4467 7.447430 CCAAAAATTTAGCATTTGTCGATCAC 58.553 34.615 0.00 0.00 33.31 3.06
2864 4468 6.090628 GCCAAAAATTTAGCATTTGTCGATCA 59.909 34.615 0.00 0.00 33.31 2.92
2865 4469 6.469322 GCCAAAAATTTAGCATTTGTCGATC 58.531 36.000 0.00 0.00 33.31 3.69
2866 4470 5.062058 CGCCAAAAATTTAGCATTTGTCGAT 59.938 36.000 8.09 0.00 37.54 3.59
2867 4471 4.384247 CGCCAAAAATTTAGCATTTGTCGA 59.616 37.500 8.09 0.00 37.54 4.20
2868 4472 4.149747 ACGCCAAAAATTTAGCATTTGTCG 59.850 37.500 2.48 2.48 40.14 4.35
2869 4473 5.590104 ACGCCAAAAATTTAGCATTTGTC 57.410 34.783 8.09 0.00 33.31 3.18
2870 4474 6.370433 AAACGCCAAAAATTTAGCATTTGT 57.630 29.167 8.09 0.00 33.31 2.83
2871 4475 8.773762 TTTAAACGCCAAAAATTTAGCATTTG 57.226 26.923 10.33 3.32 34.60 2.32
2961 4565 8.997621 TGACTTTTTGTAGACATGGTATACTC 57.002 34.615 2.25 0.00 32.30 2.59
2965 4569 9.520515 AAGAATGACTTTTTGTAGACATGGTAT 57.479 29.630 0.00 0.00 34.94 2.73
2966 4570 8.918202 AAGAATGACTTTTTGTAGACATGGTA 57.082 30.769 0.00 0.00 34.94 3.25
2967 4571 7.823745 AAGAATGACTTTTTGTAGACATGGT 57.176 32.000 0.00 0.00 34.94 3.55
3066 4677 2.504367 CCAAACACAGGAAGTAGGGTG 58.496 52.381 0.00 0.00 37.29 4.61
3077 4688 3.057596 ACAATACAATCCGCCAAACACAG 60.058 43.478 0.00 0.00 0.00 3.66
3108 4719 3.100817 CTCAAATCAAAAGGCGCATACG 58.899 45.455 10.83 0.00 44.07 3.06
3173 4784 2.437651 TCAGTGTGTTCTCATGTTCCCA 59.562 45.455 0.00 0.00 0.00 4.37
3191 4802 1.048724 TAGAGGCATCCCCCGTTCAG 61.049 60.000 0.00 0.00 0.00 3.02
3192 4803 1.002403 TAGAGGCATCCCCCGTTCA 59.998 57.895 0.00 0.00 0.00 3.18
3197 4808 0.400670 AAGAGGTAGAGGCATCCCCC 60.401 60.000 0.00 0.00 0.00 5.40
3201 4812 5.799827 AACTATGAAGAGGTAGAGGCATC 57.200 43.478 0.00 0.00 0.00 3.91
3246 4857 0.250234 CTCCTTGAGGATCGGCACAA 59.750 55.000 0.00 0.00 44.46 3.33
3287 4898 2.185350 CCGAGCTGGATGTCGCTT 59.815 61.111 0.00 0.00 42.00 4.68
3288 4899 4.521062 GCCGAGCTGGATGTCGCT 62.521 66.667 0.00 0.00 42.00 4.93
3357 4968 4.776322 CGCCCTTGATGACGCCCA 62.776 66.667 0.00 0.00 0.00 5.36
3366 4977 2.662596 CAGGTAGCACGCCCTTGA 59.337 61.111 0.00 0.00 0.00 3.02
3368 4979 2.526046 AACCAGGTAGCACGCCCTT 61.526 57.895 0.00 0.00 0.00 3.95
3372 4983 1.090052 GGATCAACCAGGTAGCACGC 61.090 60.000 0.00 0.00 38.79 5.34
3382 4993 1.656587 ACTACTGGCAGGATCAACCA 58.343 50.000 20.34 0.00 42.04 3.67
3402 5013 7.992608 TGGCTTAATCTTTGAGACAAGCATATA 59.007 33.333 19.41 7.41 42.71 0.86
3412 5023 4.228210 ACAGGGATGGCTTAATCTTTGAGA 59.772 41.667 0.00 0.00 0.00 3.27
3426 5037 4.473444 ACATATAAGGCAAACAGGGATGG 58.527 43.478 0.00 0.00 0.00 3.51
3437 5048 5.456042 CCCTACCATGTCAACATATAAGGCA 60.456 44.000 0.00 0.00 34.26 4.75
3477 5092 0.651031 GAGATCCGCTTGTAAACCGC 59.349 55.000 0.00 0.00 0.00 5.68
3480 5095 4.361420 GACTAGGAGATCCGCTTGTAAAC 58.639 47.826 0.00 0.00 42.08 2.01
3558 5173 2.807837 GCACCCAAGTACTGTTAACGGT 60.808 50.000 23.03 23.03 39.18 4.83
3582 5197 3.595173 CCGTTTGGTACTGATGATGACA 58.405 45.455 0.00 0.00 0.00 3.58
3599 5214 1.519408 CAAATCGTGAAGGACCCGTT 58.481 50.000 0.00 0.00 0.00 4.44
3603 5218 2.711542 ACATCCAAATCGTGAAGGACC 58.288 47.619 0.00 0.00 32.04 4.46
3710 5325 4.273318 AGTTTTATGAGCCCCTCACAATC 58.727 43.478 0.00 0.00 43.63 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.