Multiple sequence alignment - TraesCS6A01G166700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G166700 chr6A 100.000 3452 0 0 1 3452 169914701 169911250 0.000000e+00 6375.0
1 TraesCS6A01G166700 chr6A 90.262 534 44 4 2063 2591 169947184 169946654 0.000000e+00 691.0
2 TraesCS6A01G166700 chr6A 96.721 183 3 2 2852 3032 558176710 558176529 5.600000e-78 302.0
3 TraesCS6A01G166700 chr6A 92.614 176 10 1 2851 3023 599171903 599172078 2.060000e-62 250.0
4 TraesCS6A01G166700 chr6A 83.936 249 40 0 2044 2292 169892031 169891783 4.450000e-59 239.0
5 TraesCS6A01G166700 chr6A 76.289 388 73 8 18 401 59942969 59942597 4.550000e-44 189.0
6 TraesCS6A01G166700 chr6A 93.023 43 2 1 2513 2555 150987461 150987502 1.030000e-05 62.1
7 TraesCS6A01G166700 chr6B 89.655 1247 75 21 1568 2791 229143440 229142225 0.000000e+00 1539.0
8 TraesCS6A01G166700 chr6B 89.484 523 47 5 2063 2580 229199128 229198609 0.000000e+00 654.0
9 TraesCS6A01G166700 chr6B 93.571 420 18 4 821 1240 229145980 229145570 4.890000e-173 617.0
10 TraesCS6A01G166700 chr6B 92.212 321 22 3 3098 3417 229141272 229140954 5.250000e-123 451.0
11 TraesCS6A01G166700 chr6B 87.821 312 10 8 1231 1528 229143734 229143437 1.190000e-89 340.0
12 TraesCS6A01G166700 chr6B 91.129 124 8 2 600 720 229146453 229146330 7.660000e-37 165.0
13 TraesCS6A01G166700 chr6B 93.878 49 3 0 3404 3452 229140939 229140891 1.330000e-09 75.0
14 TraesCS6A01G166700 chr6D 88.322 1156 87 31 1715 2852 131640591 131639466 0.000000e+00 1343.0
15 TraesCS6A01G166700 chr6D 90.148 741 61 7 5 737 131674835 131674099 0.000000e+00 953.0
16 TraesCS6A01G166700 chr6D 90.843 688 21 14 737 1406 131674069 131673406 0.000000e+00 883.0
17 TraesCS6A01G166700 chr6D 93.990 416 21 2 2084 2498 131676762 131676350 8.130000e-176 627.0
18 TraesCS6A01G166700 chr6D 94.663 356 18 1 3098 3452 131638544 131638189 5.040000e-153 551.0
19 TraesCS6A01G166700 chr6D 77.728 449 80 13 1832 2261 131628386 131627939 1.230000e-64 257.0
20 TraesCS6A01G166700 chr6D 95.522 134 5 1 1532 1664 131673330 131673197 2.700000e-51 213.0
21 TraesCS6A01G166700 chr2A 96.154 182 4 1 2852 3030 719688810 719688629 9.370000e-76 294.0
22 TraesCS6A01G166700 chr2A 76.136 352 60 8 7 335 733466329 733466679 2.760000e-36 163.0
23 TraesCS6A01G166700 chr2A 85.000 180 4 4 2852 3030 772378431 772378588 9.910000e-36 161.0
24 TraesCS6A01G166700 chr2A 76.786 280 50 10 7 274 700967368 700967644 3.590000e-30 143.0
25 TraesCS6A01G166700 chr1B 79.765 425 61 19 6 406 340814669 340814246 5.640000e-73 285.0
26 TraesCS6A01G166700 chr3A 92.737 179 13 0 2853 3031 710885360 710885538 3.420000e-65 259.0
27 TraesCS6A01G166700 chr3A 97.170 106 3 0 2852 2957 617441254 617441359 2.740000e-41 180.0
28 TraesCS6A01G166700 chr4D 78.554 401 69 9 7 403 104712386 104711999 7.400000e-62 248.0
29 TraesCS6A01G166700 chr4D 84.138 145 21 2 6 149 7470438 7470295 4.650000e-29 139.0
30 TraesCS6A01G166700 chr5A 80.339 295 41 9 6 286 435686456 435686165 1.260000e-49 207.0
31 TraesCS6A01G166700 chr7D 80.989 263 32 14 93 351 571703525 571703773 3.520000e-45 193.0
32 TraesCS6A01G166700 chr2D 74.800 500 89 32 3 476 650236441 650236929 1.260000e-44 191.0
33 TraesCS6A01G166700 chr5B 79.904 209 39 3 16 221 491113772 491113564 2.150000e-32 150.0
34 TraesCS6A01G166700 chr4B 77.444 266 42 13 7 271 426776929 426777177 3.590000e-30 143.0
35 TraesCS6A01G166700 chr3B 75.517 290 43 19 4 291 29299491 29299228 2.180000e-22 117.0
36 TraesCS6A01G166700 chr4A 93.651 63 3 1 2971 3033 632697734 632697795 3.670000e-15 93.5
37 TraesCS6A01G166700 chr4A 76.963 191 25 13 213 390 562272690 562272874 1.320000e-14 91.6
38 TraesCS6A01G166700 chr7B 74.432 176 35 9 104 275 634630681 634630512 2.220000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G166700 chr6A 169911250 169914701 3451 True 6375.000000 6375 100.000000 1 3452 1 chr6A.!!$R3 3451
1 TraesCS6A01G166700 chr6A 169946654 169947184 530 True 691.000000 691 90.262000 2063 2591 1 chr6A.!!$R4 528
2 TraesCS6A01G166700 chr6B 229198609 229199128 519 True 654.000000 654 89.484000 2063 2580 1 chr6B.!!$R1 517
3 TraesCS6A01G166700 chr6B 229140891 229146453 5562 True 531.166667 1539 91.377667 600 3452 6 chr6B.!!$R2 2852
4 TraesCS6A01G166700 chr6D 131638189 131640591 2402 True 947.000000 1343 91.492500 1715 3452 2 chr6D.!!$R2 1737
5 TraesCS6A01G166700 chr6D 131673197 131676762 3565 True 669.000000 953 92.625750 5 2498 4 chr6D.!!$R3 2493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 2175 0.103208 CCGTCCATGTACTCAGAGCC 59.897 60.0 0.0 0.0 0.0 4.70 F
451 2379 0.105224 TTGGCGTTTGAGAGTCCGAA 59.895 50.0 0.0 0.0 0.0 4.30 F
1009 3287 0.107268 TGACTGGCCGATGGATGATG 59.893 55.0 0.0 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1288 5411 0.174845 TGGATCTGTAGCCGGTTTCG 59.825 55.0 1.90 0.0 32.07 3.46 R
1508 5645 0.447801 CAAAATGTCCTTCGCTCCGG 59.552 55.0 0.00 0.0 0.00 5.14 R
2880 7100 0.040067 GTCCGTACGACAGTTTCCGT 60.040 55.0 18.76 0.0 41.54 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 1958 1.648467 GCTTCAACATGGAGGACGCC 61.648 60.000 0.00 0.00 0.00 5.68
72 1996 2.671070 CCAAGTGGCCGAGATGGT 59.329 61.111 0.00 0.00 41.21 3.55
74 1998 1.746615 CAAGTGGCCGAGATGGTGG 60.747 63.158 0.00 0.00 41.21 4.61
99 2024 1.551883 GCAGGCCATTTGGAGTTCATT 59.448 47.619 5.01 0.00 37.39 2.57
108 2033 6.041296 GCCATTTGGAGTTCATTAAGGATGAT 59.959 38.462 0.00 0.00 40.05 2.45
118 2043 6.438186 TCATTAAGGATGATGCCTATGTGA 57.562 37.500 0.00 0.00 39.83 3.58
139 2064 1.305930 GGCCAACCGACAGTTCATCC 61.306 60.000 0.00 0.00 36.18 3.51
173 2098 1.154016 CGACCGACATGCTCTTCGT 60.154 57.895 0.00 0.00 33.23 3.85
174 2099 0.732880 CGACCGACATGCTCTTCGTT 60.733 55.000 0.00 0.00 33.23 3.85
189 2114 1.134901 CGTTGAGGTCGAGACGGAG 59.865 63.158 0.00 0.00 32.29 4.63
245 2170 1.218047 GCTGCCGTCCATGTACTCA 59.782 57.895 0.00 0.00 0.00 3.41
250 2175 0.103208 CCGTCCATGTACTCAGAGCC 59.897 60.000 0.00 0.00 0.00 4.70
257 2182 2.283604 TACTCAGAGCCGGGCACA 60.284 61.111 23.09 0.00 0.00 4.57
286 2212 3.427573 TGGACATCTCCACGAAGACTAA 58.572 45.455 0.00 0.00 42.15 2.24
372 2300 2.851263 TGTATGGGGTATTCGGATGC 57.149 50.000 0.00 0.00 0.00 3.91
373 2301 2.050918 TGTATGGGGTATTCGGATGCA 58.949 47.619 0.00 0.00 0.00 3.96
391 2319 4.724074 TGCAGATGAGCAAATTTAAGGG 57.276 40.909 0.00 0.00 42.46 3.95
393 2321 3.699067 CAGATGAGCAAATTTAAGGGCG 58.301 45.455 0.00 0.00 0.00 6.13
397 2325 1.134367 GAGCAAATTTAAGGGCGGACC 59.866 52.381 0.00 0.00 40.67 4.46
410 2338 1.520787 CGGACCGGTCATTACCTGC 60.521 63.158 34.40 14.40 44.35 4.85
414 2342 1.520787 CCGGTCATTACCTGCGGAC 60.521 63.158 0.00 0.00 44.35 4.79
416 2344 2.171725 GGTCATTACCTGCGGACGC 61.172 63.158 10.13 10.13 43.08 5.19
427 2355 3.635433 GCGGACGCATCTAAGTGTA 57.365 52.632 12.31 0.00 41.49 2.90
432 2360 2.034305 GGACGCATCTAAGTGTATCCGT 59.966 50.000 0.00 0.00 31.30 4.69
433 2361 3.490419 GGACGCATCTAAGTGTATCCGTT 60.490 47.826 0.00 0.00 31.30 4.44
436 2364 2.544267 GCATCTAAGTGTATCCGTTGGC 59.456 50.000 0.00 0.00 0.00 4.52
441 2369 1.153353 AGTGTATCCGTTGGCGTTTG 58.847 50.000 0.00 0.00 36.15 2.93
444 2372 1.001068 TGTATCCGTTGGCGTTTGAGA 59.999 47.619 0.00 0.00 36.15 3.27
450 2378 0.599204 GTTGGCGTTTGAGAGTCCGA 60.599 55.000 0.00 0.00 0.00 4.55
451 2379 0.105224 TTGGCGTTTGAGAGTCCGAA 59.895 50.000 0.00 0.00 0.00 4.30
456 2384 2.223377 GCGTTTGAGAGTCCGAATTTGT 59.777 45.455 0.00 0.00 0.00 2.83
462 2390 5.723672 TGAGAGTCCGAATTTGTCTACTT 57.276 39.130 0.00 0.00 0.00 2.24
467 2395 3.611549 GTCCGAATTTGTCTACTTCGACC 59.388 47.826 8.03 0.00 43.24 4.79
482 2410 4.338682 ACTTCGACCGTAGATGCTCTAAAT 59.661 41.667 3.17 0.00 29.58 1.40
488 2416 5.238583 ACCGTAGATGCTCTAAATTATGGC 58.761 41.667 0.00 0.00 29.58 4.40
492 2420 6.128715 CGTAGATGCTCTAAATTATGGCACAG 60.129 42.308 0.00 0.00 33.60 3.66
509 2437 1.750778 ACAGCATATTTTCCTTGCCCG 59.249 47.619 0.00 0.00 37.07 6.13
511 2439 0.249447 GCATATTTTCCTTGCCCGGC 60.249 55.000 1.04 1.04 0.00 6.13
532 2460 5.784750 GCAAATTGGCCTATGAACTTTTC 57.215 39.130 3.32 0.00 0.00 2.29
533 2461 4.327087 GCAAATTGGCCTATGAACTTTTCG 59.673 41.667 3.32 0.00 0.00 3.46
722 2653 3.730761 GCAGCGGCTGAACCAGTG 61.731 66.667 32.72 5.68 39.03 3.66
783 2759 4.100189 CGAGACTTCTCCCCAGTCAATTAT 59.900 45.833 0.54 0.00 42.85 1.28
784 2760 5.302059 CGAGACTTCTCCCCAGTCAATTATA 59.698 44.000 0.54 0.00 42.85 0.98
786 2762 6.206042 AGACTTCTCCCCAGTCAATTATACT 58.794 40.000 3.06 0.00 42.85 2.12
787 2763 7.363031 AGACTTCTCCCCAGTCAATTATACTA 58.637 38.462 3.06 0.00 42.85 1.82
788 2764 7.507616 AGACTTCTCCCCAGTCAATTATACTAG 59.492 40.741 3.06 0.00 42.85 2.57
789 2765 7.133483 ACTTCTCCCCAGTCAATTATACTAGT 58.867 38.462 0.00 0.00 0.00 2.57
791 2767 6.679542 TCTCCCCAGTCAATTATACTAGTGA 58.320 40.000 5.39 0.00 0.00 3.41
792 2768 6.550108 TCTCCCCAGTCAATTATACTAGTGAC 59.450 42.308 5.39 3.15 40.56 3.67
793 2769 5.301045 TCCCCAGTCAATTATACTAGTGACG 59.699 44.000 5.39 0.68 44.08 4.35
794 2770 4.982916 CCCAGTCAATTATACTAGTGACGC 59.017 45.833 5.39 0.00 44.08 5.19
795 2771 5.221263 CCCAGTCAATTATACTAGTGACGCT 60.221 44.000 5.39 0.00 44.08 5.07
796 2772 5.915758 CCAGTCAATTATACTAGTGACGCTC 59.084 44.000 5.39 0.00 44.08 5.03
797 2773 5.915758 CAGTCAATTATACTAGTGACGCTCC 59.084 44.000 5.39 0.00 44.08 4.70
798 2774 5.009811 AGTCAATTATACTAGTGACGCTCCC 59.990 44.000 5.39 0.00 44.08 4.30
799 2775 5.009811 GTCAATTATACTAGTGACGCTCCCT 59.990 44.000 5.39 0.00 31.84 4.20
800 2776 6.206243 GTCAATTATACTAGTGACGCTCCCTA 59.794 42.308 5.39 0.00 31.84 3.53
845 3123 1.067084 CATCGACATGAGCTCGGCT 59.933 57.895 9.64 0.00 43.88 5.52
879 3157 1.690209 CCACTATTCCTACCCCCGTCA 60.690 57.143 0.00 0.00 0.00 4.35
890 3168 4.033776 CCCGTCACCATGCCCAGT 62.034 66.667 0.00 0.00 0.00 4.00
944 3222 3.520862 CAGCGCGGGCCATCAATT 61.521 61.111 22.01 0.00 41.24 2.32
994 3272 8.420222 CCTTACACTGATCTGATTAATCTGACT 58.580 37.037 22.72 14.03 37.54 3.41
1007 3285 0.687427 TCTGACTGGCCGATGGATGA 60.687 55.000 0.00 0.00 0.00 2.92
1008 3286 0.395686 CTGACTGGCCGATGGATGAT 59.604 55.000 0.00 0.00 0.00 2.45
1009 3287 0.107268 TGACTGGCCGATGGATGATG 59.893 55.000 0.00 0.00 0.00 3.07
1010 3288 1.228063 ACTGGCCGATGGATGATGC 60.228 57.895 0.00 0.00 0.00 3.91
1011 3289 1.228033 CTGGCCGATGGATGATGCA 60.228 57.895 0.00 0.00 0.00 3.96
1286 5409 1.137086 CCGAGGTGAGTCGATTGGATT 59.863 52.381 0.00 0.00 42.85 3.01
1288 5411 2.860735 CGAGGTGAGTCGATTGGATTTC 59.139 50.000 0.00 0.00 42.85 2.17
1358 5495 1.395954 CGTGGTGCACTTGATGATGAG 59.604 52.381 17.98 0.00 31.34 2.90
1359 5496 2.430465 GTGGTGCACTTGATGATGAGT 58.570 47.619 17.98 0.00 0.00 3.41
1360 5497 2.816087 GTGGTGCACTTGATGATGAGTT 59.184 45.455 17.98 0.00 0.00 3.01
1361 5498 2.815503 TGGTGCACTTGATGATGAGTTG 59.184 45.455 17.98 0.00 0.00 3.16
1362 5499 3.076621 GGTGCACTTGATGATGAGTTGA 58.923 45.455 17.98 0.00 0.00 3.18
1363 5500 3.693085 GGTGCACTTGATGATGAGTTGAT 59.307 43.478 17.98 0.00 0.00 2.57
1364 5501 4.438336 GGTGCACTTGATGATGAGTTGATG 60.438 45.833 17.98 0.00 0.00 3.07
1365 5502 4.393990 GTGCACTTGATGATGAGTTGATGA 59.606 41.667 10.32 0.00 0.00 2.92
1371 5508 6.539103 ACTTGATGATGAGTTGATGACTGATG 59.461 38.462 0.00 0.00 39.19 3.07
1377 5514 4.520179 TGAGTTGATGACTGATGGATTGG 58.480 43.478 0.00 0.00 39.19 3.16
1504 5641 0.397957 TGCCGTAGATTCCTGGGCTA 60.398 55.000 9.87 0.00 41.25 3.93
1508 5645 1.338200 CGTAGATTCCTGGGCTATGGC 60.338 57.143 0.00 0.00 37.82 4.40
1525 5662 1.745489 GCCGGAGCGAAGGACATTT 60.745 57.895 5.05 0.00 0.00 2.32
1626 5782 7.700656 CACTTTTTGTTAATCCAAAGAACTCGT 59.299 33.333 9.14 0.00 35.85 4.18
1786 5945 0.668535 GCTCTTGTCCCGTTGCTTTT 59.331 50.000 0.00 0.00 0.00 2.27
1836 5995 4.494690 CGCGTGATATTCATATTGCCATCC 60.495 45.833 0.00 0.00 0.00 3.51
1952 6111 3.217242 GTGAAGCTCCTTCGCAAGA 57.783 52.632 12.24 0.00 46.44 3.02
2012 6171 2.167219 CGCCACCACACATAGAGCG 61.167 63.158 0.00 0.00 35.82 5.03
2451 6613 0.034337 GAGAGCCGTGTGGTTGGTAA 59.966 55.000 0.00 0.00 37.67 2.85
2453 6615 0.250166 GAGCCGTGTGGTTGGTAACT 60.250 55.000 0.00 0.00 37.67 2.24
2460 6622 2.552315 GTGTGGTTGGTAACTGTCCATG 59.448 50.000 0.00 0.00 34.75 3.66
2479 6655 1.226717 GACGACCGCTGGATGAGAC 60.227 63.158 1.50 0.00 0.00 3.36
2517 6693 2.217750 TGGGATTATGCCGTCGATTTG 58.782 47.619 0.00 0.00 0.00 2.32
2564 6770 6.094603 AGTCATGACTTTTATCAGCATGTTCC 59.905 38.462 22.89 0.00 38.83 3.62
2567 6773 4.391830 TGACTTTTATCAGCATGTTCCGTC 59.608 41.667 0.00 0.00 37.40 4.79
2708 6916 6.603201 TCCAATGGTTAACATGATTTCTCTCC 59.397 38.462 8.10 0.00 40.44 3.71
2762 6974 6.686630 TGGATTTATGCTTTCACGTGAATTT 58.313 32.000 30.10 17.21 33.54 1.82
2763 6975 7.151308 TGGATTTATGCTTTCACGTGAATTTT 58.849 30.769 30.10 17.52 33.54 1.82
2783 6996 8.579682 AATTTTAATAATCAAAGGCGCAGATC 57.420 30.769 10.83 0.00 0.00 2.75
2813 7026 1.004560 CATCCAGGACGTGTGCAGT 60.005 57.895 0.00 0.00 0.00 4.40
2815 7028 0.320771 ATCCAGGACGTGTGCAGTTC 60.321 55.000 0.00 0.00 0.00 3.01
2817 7030 2.029073 AGGACGTGTGCAGTTCGG 59.971 61.111 0.00 0.00 0.00 4.30
2819 7032 3.712881 GACGTGTGCAGTTCGGCC 61.713 66.667 0.00 0.00 0.00 6.13
2836 7056 4.394712 CGCCACCAGGTCCTCCAC 62.395 72.222 0.00 0.00 37.19 4.02
2856 7076 4.192000 CTCACTGGAGCGCGAAAT 57.808 55.556 12.10 0.00 33.67 2.17
2857 7077 2.460330 CTCACTGGAGCGCGAAATT 58.540 52.632 12.10 0.00 33.67 1.82
2858 7078 0.095935 CTCACTGGAGCGCGAAATTG 59.904 55.000 12.10 0.00 33.67 2.32
2859 7079 1.512734 CACTGGAGCGCGAAATTGC 60.513 57.895 12.10 0.00 0.00 3.56
2860 7080 1.672356 ACTGGAGCGCGAAATTGCT 60.672 52.632 12.10 0.00 45.90 3.91
2861 7081 1.237285 ACTGGAGCGCGAAATTGCTT 61.237 50.000 12.10 0.00 42.60 3.91
2862 7082 0.522076 CTGGAGCGCGAAATTGCTTC 60.522 55.000 12.10 0.00 42.60 3.86
2863 7083 1.233950 TGGAGCGCGAAATTGCTTCA 61.234 50.000 12.10 0.00 44.30 3.02
2864 7084 0.794605 GGAGCGCGAAATTGCTTCAC 60.795 55.000 12.10 0.00 42.60 3.18
2865 7085 0.166814 GAGCGCGAAATTGCTTCACT 59.833 50.000 12.10 0.00 42.60 3.41
2866 7086 0.593128 AGCGCGAAATTGCTTCACTT 59.407 45.000 12.10 0.00 38.57 3.16
2867 7087 1.804151 AGCGCGAAATTGCTTCACTTA 59.196 42.857 12.10 0.00 38.57 2.24
2868 7088 1.905049 GCGCGAAATTGCTTCACTTAC 59.095 47.619 12.10 0.00 33.17 2.34
2869 7089 2.158143 CGCGAAATTGCTTCACTTACG 58.842 47.619 0.00 0.00 33.17 3.18
2870 7090 2.505866 GCGAAATTGCTTCACTTACGG 58.494 47.619 0.00 0.00 33.17 4.02
2871 7091 2.158841 GCGAAATTGCTTCACTTACGGA 59.841 45.455 0.00 0.00 33.17 4.69
2872 7092 3.181510 GCGAAATTGCTTCACTTACGGAT 60.182 43.478 0.00 0.00 33.17 4.18
2873 7093 4.334443 CGAAATTGCTTCACTTACGGATG 58.666 43.478 0.00 0.00 33.17 3.51
2874 7094 4.092821 CGAAATTGCTTCACTTACGGATGA 59.907 41.667 0.00 0.00 33.17 2.92
2875 7095 5.220662 CGAAATTGCTTCACTTACGGATGAT 60.221 40.000 0.00 0.00 33.17 2.45
2876 7096 5.490139 AATTGCTTCACTTACGGATGATG 57.510 39.130 0.00 0.00 0.00 3.07
2877 7097 2.279741 TGCTTCACTTACGGATGATGC 58.720 47.619 2.87 2.87 43.03 3.91
2878 7098 2.093500 TGCTTCACTTACGGATGATGCT 60.093 45.455 9.70 0.00 43.10 3.79
2879 7099 2.939103 GCTTCACTTACGGATGATGCTT 59.061 45.455 2.65 0.00 40.82 3.91
2880 7100 4.119862 GCTTCACTTACGGATGATGCTTA 58.880 43.478 2.65 0.00 40.82 3.09
2881 7101 4.025647 GCTTCACTTACGGATGATGCTTAC 60.026 45.833 2.65 0.00 40.82 2.34
2882 7102 3.702330 TCACTTACGGATGATGCTTACG 58.298 45.455 0.00 0.00 0.00 3.18
2883 7103 2.794910 CACTTACGGATGATGCTTACGG 59.205 50.000 0.00 0.00 0.00 4.02
2884 7104 2.691526 ACTTACGGATGATGCTTACGGA 59.308 45.455 0.00 0.00 0.00 4.69
2885 7105 3.131577 ACTTACGGATGATGCTTACGGAA 59.868 43.478 0.00 0.00 0.00 4.30
2886 7106 2.684001 ACGGATGATGCTTACGGAAA 57.316 45.000 0.00 0.00 0.00 3.13
2887 7107 2.277084 ACGGATGATGCTTACGGAAAC 58.723 47.619 0.00 0.00 0.00 2.78
2888 7108 2.093658 ACGGATGATGCTTACGGAAACT 60.094 45.455 0.00 0.00 0.00 2.66
2889 7109 2.285220 CGGATGATGCTTACGGAAACTG 59.715 50.000 0.00 0.00 0.00 3.16
2890 7110 3.270877 GGATGATGCTTACGGAAACTGT 58.729 45.455 0.00 0.00 0.00 3.55
2891 7111 3.309954 GGATGATGCTTACGGAAACTGTC 59.690 47.826 0.00 0.00 0.00 3.51
2892 7112 2.333926 TGATGCTTACGGAAACTGTCG 58.666 47.619 0.00 0.00 0.00 4.35
2893 7113 2.288579 TGATGCTTACGGAAACTGTCGT 60.289 45.455 0.00 0.00 42.55 4.34
2894 7114 3.057386 TGATGCTTACGGAAACTGTCGTA 60.057 43.478 0.00 0.00 40.31 3.43
2895 7115 2.664916 TGCTTACGGAAACTGTCGTAC 58.335 47.619 0.44 0.00 40.83 3.67
2896 7116 1.645751 GCTTACGGAAACTGTCGTACG 59.354 52.381 9.53 9.53 40.83 3.67
2897 7117 2.245096 CTTACGGAAACTGTCGTACGG 58.755 52.381 16.52 1.50 40.83 4.02
2898 7118 1.518325 TACGGAAACTGTCGTACGGA 58.482 50.000 16.52 1.32 40.31 4.69
2899 7119 0.040067 ACGGAAACTGTCGTACGGAC 60.040 55.000 16.52 12.55 46.27 4.79
2907 7127 2.650163 GTCGTACGGACAGATGTGC 58.350 57.895 16.52 0.00 45.36 4.57
2908 7128 0.801067 GTCGTACGGACAGATGTGCC 60.801 60.000 16.52 0.00 45.36 5.01
2909 7129 1.214325 CGTACGGACAGATGTGCCA 59.786 57.895 7.57 0.00 32.36 4.92
2910 7130 0.802222 CGTACGGACAGATGTGCCAG 60.802 60.000 7.57 0.00 32.36 4.85
2911 7131 1.084370 GTACGGACAGATGTGCCAGC 61.084 60.000 0.00 0.00 32.36 4.85
2912 7132 2.557059 TACGGACAGATGTGCCAGCG 62.557 60.000 0.00 0.00 32.36 5.18
2913 7133 3.503363 GGACAGATGTGCCAGCGC 61.503 66.667 0.00 0.00 0.00 5.92
2914 7134 3.503363 GACAGATGTGCCAGCGCC 61.503 66.667 2.29 0.00 0.00 6.53
2915 7135 3.965539 GACAGATGTGCCAGCGCCT 62.966 63.158 2.29 0.00 0.00 5.52
2916 7136 2.187685 CAGATGTGCCAGCGCCTA 59.812 61.111 2.29 0.00 0.00 3.93
2917 7137 1.450134 CAGATGTGCCAGCGCCTAA 60.450 57.895 2.29 0.00 0.00 2.69
2918 7138 0.816825 CAGATGTGCCAGCGCCTAAT 60.817 55.000 2.29 0.00 0.00 1.73
2919 7139 0.107017 AGATGTGCCAGCGCCTAATT 60.107 50.000 2.29 0.00 0.00 1.40
2920 7140 0.740737 GATGTGCCAGCGCCTAATTT 59.259 50.000 2.29 0.00 0.00 1.82
2921 7141 1.946768 GATGTGCCAGCGCCTAATTTA 59.053 47.619 2.29 0.00 0.00 1.40
2922 7142 2.051334 TGTGCCAGCGCCTAATTTAT 57.949 45.000 2.29 0.00 0.00 1.40
2923 7143 1.946768 TGTGCCAGCGCCTAATTTATC 59.053 47.619 2.29 0.00 0.00 1.75
2924 7144 1.266989 GTGCCAGCGCCTAATTTATCC 59.733 52.381 2.29 0.00 0.00 2.59
2925 7145 0.881796 GCCAGCGCCTAATTTATCCC 59.118 55.000 2.29 0.00 0.00 3.85
2926 7146 1.545651 GCCAGCGCCTAATTTATCCCT 60.546 52.381 2.29 0.00 0.00 4.20
2927 7147 2.427506 CCAGCGCCTAATTTATCCCTC 58.572 52.381 2.29 0.00 0.00 4.30
2928 7148 2.427506 CAGCGCCTAATTTATCCCTCC 58.572 52.381 2.29 0.00 0.00 4.30
2929 7149 1.351350 AGCGCCTAATTTATCCCTCCC 59.649 52.381 2.29 0.00 0.00 4.30
2930 7150 1.613520 GCGCCTAATTTATCCCTCCCC 60.614 57.143 0.00 0.00 0.00 4.81
2931 7151 1.004394 CGCCTAATTTATCCCTCCCCC 59.996 57.143 0.00 0.00 0.00 5.40
2932 7152 2.359243 GCCTAATTTATCCCTCCCCCT 58.641 52.381 0.00 0.00 0.00 4.79
2933 7153 2.041755 GCCTAATTTATCCCTCCCCCTG 59.958 54.545 0.00 0.00 0.00 4.45
2934 7154 3.609162 CCTAATTTATCCCTCCCCCTGA 58.391 50.000 0.00 0.00 0.00 3.86
2935 7155 3.987501 CCTAATTTATCCCTCCCCCTGAA 59.012 47.826 0.00 0.00 0.00 3.02
2936 7156 4.608028 CCTAATTTATCCCTCCCCCTGAAT 59.392 45.833 0.00 0.00 0.00 2.57
2937 7157 5.076458 CCTAATTTATCCCTCCCCCTGAATT 59.924 44.000 0.00 0.00 0.00 2.17
2938 7158 5.503605 AATTTATCCCTCCCCCTGAATTT 57.496 39.130 0.00 0.00 0.00 1.82
2939 7159 4.536295 TTTATCCCTCCCCCTGAATTTC 57.464 45.455 0.00 0.00 0.00 2.17
2940 7160 0.846693 ATCCCTCCCCCTGAATTTCG 59.153 55.000 0.00 0.00 0.00 3.46
2941 7161 1.227383 CCCTCCCCCTGAATTTCGG 59.773 63.158 0.00 0.00 0.00 4.30
2942 7162 1.227383 CCTCCCCCTGAATTTCGGG 59.773 63.158 16.21 16.21 42.66 5.14
2948 7168 3.116091 CCTGAATTTCGGGGATGGG 57.884 57.895 15.47 0.00 39.28 4.00
2949 7169 0.468029 CCTGAATTTCGGGGATGGGG 60.468 60.000 15.47 0.00 39.28 4.96
2950 7170 1.076339 TGAATTTCGGGGATGGGGC 60.076 57.895 0.00 0.00 0.00 5.80
2951 7171 1.832608 GAATTTCGGGGATGGGGCC 60.833 63.158 0.00 0.00 0.00 5.80
2958 7178 3.502875 GGGATGGGGCCCTCCTTC 61.503 72.222 28.91 18.85 45.12 3.46
2959 7179 2.368878 GGATGGGGCCCTCCTTCT 60.369 66.667 25.93 0.77 35.33 2.85
2960 7180 1.073706 GGATGGGGCCCTCCTTCTA 60.074 63.158 25.93 0.37 35.33 2.10
2961 7181 0.697854 GGATGGGGCCCTCCTTCTAA 60.698 60.000 25.93 0.00 35.33 2.10
2962 7182 1.450360 GATGGGGCCCTCCTTCTAAT 58.550 55.000 25.93 5.68 35.33 1.73
2963 7183 1.352687 GATGGGGCCCTCCTTCTAATC 59.647 57.143 25.93 11.83 35.33 1.75
2964 7184 0.346932 TGGGGCCCTCCTTCTAATCT 59.653 55.000 25.93 0.00 35.33 2.40
2965 7185 0.767998 GGGGCCCTCCTTCTAATCTG 59.232 60.000 24.38 0.00 35.33 2.90
2966 7186 1.695989 GGGGCCCTCCTTCTAATCTGA 60.696 57.143 24.38 0.00 35.33 3.27
2967 7187 2.343625 GGGCCCTCCTTCTAATCTGAT 58.656 52.381 17.04 0.00 0.00 2.90
2968 7188 2.039613 GGGCCCTCCTTCTAATCTGATG 59.960 54.545 17.04 0.00 0.00 3.07
2969 7189 2.975489 GGCCCTCCTTCTAATCTGATGA 59.025 50.000 0.00 0.00 0.00 2.92
2970 7190 3.586618 GGCCCTCCTTCTAATCTGATGAT 59.413 47.826 0.00 0.00 33.70 2.45
2971 7191 4.042684 GGCCCTCCTTCTAATCTGATGATT 59.957 45.833 0.00 0.00 44.32 2.57
2972 7192 5.457342 GGCCCTCCTTCTAATCTGATGATTT 60.457 44.000 0.00 0.00 42.37 2.17
2973 7193 5.704978 GCCCTCCTTCTAATCTGATGATTTC 59.295 44.000 0.00 0.00 42.37 2.17
2974 7194 6.689946 GCCCTCCTTCTAATCTGATGATTTCA 60.690 42.308 0.00 0.00 42.37 2.69
2975 7195 7.460071 CCCTCCTTCTAATCTGATGATTTCAT 58.540 38.462 0.00 0.00 42.37 2.57
2976 7196 7.943447 CCCTCCTTCTAATCTGATGATTTCATT 59.057 37.037 0.00 0.00 42.37 2.57
2977 7197 9.352191 CCTCCTTCTAATCTGATGATTTCATTT 57.648 33.333 0.00 0.00 42.37 2.32
2979 7199 9.910267 TCCTTCTAATCTGATGATTTCATTTCA 57.090 29.630 0.00 0.00 42.37 2.69
2983 7203 9.334947 TCTAATCTGATGATTTCATTTCAGTCC 57.665 33.333 9.74 0.00 42.37 3.85
2984 7204 6.615264 ATCTGATGATTTCATTTCAGTCCG 57.385 37.500 9.74 0.00 35.54 4.79
2985 7205 5.491070 TCTGATGATTTCATTTCAGTCCGT 58.509 37.500 9.74 0.00 35.54 4.69
2986 7206 6.639563 TCTGATGATTTCATTTCAGTCCGTA 58.360 36.000 9.74 0.00 35.54 4.02
2987 7207 7.102993 TCTGATGATTTCATTTCAGTCCGTAA 58.897 34.615 9.74 0.00 35.54 3.18
2988 7208 7.278646 TCTGATGATTTCATTTCAGTCCGTAAG 59.721 37.037 9.74 0.00 35.54 2.34
2989 7209 6.878923 TGATGATTTCATTTCAGTCCGTAAGT 59.121 34.615 0.00 0.00 36.57 2.24
2990 7210 7.390440 TGATGATTTCATTTCAGTCCGTAAGTT 59.610 33.333 0.00 0.00 36.57 2.66
2991 7211 7.504924 TGATTTCATTTCAGTCCGTAAGTTT 57.495 32.000 0.00 0.00 0.00 2.66
2992 7212 8.610248 TGATTTCATTTCAGTCCGTAAGTTTA 57.390 30.769 0.00 0.00 0.00 2.01
2993 7213 9.058174 TGATTTCATTTCAGTCCGTAAGTTTAA 57.942 29.630 0.00 0.00 0.00 1.52
2994 7214 9.887406 GATTTCATTTCAGTCCGTAAGTTTAAA 57.113 29.630 0.00 0.00 0.00 1.52
2996 7216 9.672086 TTTCATTTCAGTCCGTAAGTTTAAATG 57.328 29.630 0.00 0.00 35.45 2.32
2997 7217 7.302524 TCATTTCAGTCCGTAAGTTTAAATGC 58.697 34.615 0.00 0.00 34.60 3.56
2998 7218 4.914312 TCAGTCCGTAAGTTTAAATGCG 57.086 40.909 0.00 0.00 0.00 4.73
2999 7219 4.309099 TCAGTCCGTAAGTTTAAATGCGT 58.691 39.130 0.00 0.00 0.00 5.24
3000 7220 4.751098 TCAGTCCGTAAGTTTAAATGCGTT 59.249 37.500 0.00 0.00 0.00 4.84
3001 7221 4.843984 CAGTCCGTAAGTTTAAATGCGTTG 59.156 41.667 0.00 0.00 0.00 4.10
3002 7222 4.751098 AGTCCGTAAGTTTAAATGCGTTGA 59.249 37.500 0.00 0.00 0.00 3.18
3003 7223 5.236911 AGTCCGTAAGTTTAAATGCGTTGAA 59.763 36.000 0.00 0.00 0.00 2.69
3004 7224 5.908499 GTCCGTAAGTTTAAATGCGTTGAAA 59.092 36.000 0.00 0.00 0.00 2.69
3005 7225 6.085849 GTCCGTAAGTTTAAATGCGTTGAAAG 59.914 38.462 1.08 0.00 0.00 2.62
3006 7226 5.910723 CCGTAAGTTTAAATGCGTTGAAAGT 59.089 36.000 1.08 2.26 0.00 2.66
3007 7227 6.415573 CCGTAAGTTTAAATGCGTTGAAAGTT 59.584 34.615 20.55 20.55 0.00 2.66
3008 7228 7.263819 CGTAAGTTTAAATGCGTTGAAAGTTG 58.736 34.615 23.66 10.34 0.00 3.16
3009 7229 5.635549 AGTTTAAATGCGTTGAAAGTTGC 57.364 34.783 1.08 0.00 0.00 4.17
3010 7230 4.506288 AGTTTAAATGCGTTGAAAGTTGCC 59.494 37.500 1.08 0.00 0.00 4.52
3011 7231 2.888834 AAATGCGTTGAAAGTTGCCT 57.111 40.000 0.00 0.00 0.00 4.75
3012 7232 2.138596 AATGCGTTGAAAGTTGCCTG 57.861 45.000 0.00 0.00 0.00 4.85
3013 7233 1.032014 ATGCGTTGAAAGTTGCCTGT 58.968 45.000 0.00 0.00 0.00 4.00
3014 7234 1.669604 TGCGTTGAAAGTTGCCTGTA 58.330 45.000 0.00 0.00 0.00 2.74
3015 7235 2.017782 TGCGTTGAAAGTTGCCTGTAA 58.982 42.857 0.00 0.00 0.00 2.41
3016 7236 2.032799 TGCGTTGAAAGTTGCCTGTAAG 59.967 45.455 0.00 0.00 0.00 2.34
3017 7237 2.032924 GCGTTGAAAGTTGCCTGTAAGT 59.967 45.455 0.00 0.00 0.00 2.24
3018 7238 3.617669 CGTTGAAAGTTGCCTGTAAGTG 58.382 45.455 0.00 0.00 0.00 3.16
3019 7239 3.064820 CGTTGAAAGTTGCCTGTAAGTGT 59.935 43.478 0.00 0.00 0.00 3.55
3020 7240 4.271533 CGTTGAAAGTTGCCTGTAAGTGTA 59.728 41.667 0.00 0.00 0.00 2.90
3021 7241 5.558273 CGTTGAAAGTTGCCTGTAAGTGTAG 60.558 44.000 0.00 0.00 0.00 2.74
3022 7242 3.813166 TGAAAGTTGCCTGTAAGTGTAGC 59.187 43.478 0.00 0.00 0.00 3.58
3023 7243 3.485463 AAGTTGCCTGTAAGTGTAGCA 57.515 42.857 0.00 0.00 0.00 3.49
3024 7244 3.703001 AGTTGCCTGTAAGTGTAGCAT 57.297 42.857 0.00 0.00 32.67 3.79
3025 7245 3.600388 AGTTGCCTGTAAGTGTAGCATC 58.400 45.455 0.00 0.00 32.67 3.91
3026 7246 3.261897 AGTTGCCTGTAAGTGTAGCATCT 59.738 43.478 0.00 0.00 32.67 2.90
3027 7247 3.526931 TGCCTGTAAGTGTAGCATCTC 57.473 47.619 0.00 0.00 0.00 2.75
3028 7248 3.099905 TGCCTGTAAGTGTAGCATCTCT 58.900 45.455 0.00 0.00 0.00 3.10
3029 7249 3.131223 TGCCTGTAAGTGTAGCATCTCTC 59.869 47.826 0.00 0.00 0.00 3.20
3030 7250 3.491792 GCCTGTAAGTGTAGCATCTCTCC 60.492 52.174 0.00 0.00 0.00 3.71
3031 7251 3.701542 CCTGTAAGTGTAGCATCTCTCCA 59.298 47.826 0.00 0.00 0.00 3.86
3032 7252 4.343526 CCTGTAAGTGTAGCATCTCTCCAT 59.656 45.833 0.00 0.00 0.00 3.41
3033 7253 5.163364 CCTGTAAGTGTAGCATCTCTCCATT 60.163 44.000 0.00 0.00 0.00 3.16
3034 7254 5.664457 TGTAAGTGTAGCATCTCTCCATTG 58.336 41.667 0.00 0.00 0.00 2.82
3035 7255 3.834489 AGTGTAGCATCTCTCCATTGG 57.166 47.619 0.00 0.00 0.00 3.16
3036 7256 3.378512 AGTGTAGCATCTCTCCATTGGA 58.621 45.455 5.05 5.05 0.00 3.53
3046 7266 1.684386 CTCCATTGGAGCGCCTCTCT 61.684 60.000 19.49 0.00 43.29 3.10
3053 7273 1.288752 GAGCGCCTCTCTAGCATCC 59.711 63.158 2.29 0.00 38.78 3.51
3073 7293 3.798954 GATGCCGCCTTCGCTAGCT 62.799 63.158 13.93 0.00 34.12 3.32
3077 7297 3.558411 CGCCTTCGCTAGCTGCAC 61.558 66.667 13.93 0.00 43.06 4.57
3136 8625 7.805071 GGATATGTTCATTGCTAAAGAATTCCG 59.195 37.037 0.65 0.00 0.00 4.30
3192 8681 4.623932 ATGTCATATGCTTGTACCCGAT 57.376 40.909 0.00 0.00 0.00 4.18
3264 8753 2.953648 CTCAGCCATGCAATGTATTCCA 59.046 45.455 0.00 0.00 44.81 3.53
3280 8769 8.945195 ATGTATTCCATGGTCATGTGATATTT 57.055 30.769 12.58 0.00 37.11 1.40
3285 8774 8.586879 TTCCATGGTCATGTGATATTTTGTTA 57.413 30.769 12.58 0.00 37.11 2.41
3307 8796 8.710239 TGTTATGTGTATATGAACCTGTACCAT 58.290 33.333 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.991536 GAAGCTCGGAGCCGGTGTC 62.992 68.421 25.49 11.90 43.77 3.67
2 3 4.070552 GAAGCTCGGAGCCGGTGT 62.071 66.667 25.49 4.55 43.77 4.16
4 5 3.311110 TTGAAGCTCGGAGCCGGT 61.311 61.111 25.49 11.97 43.77 5.28
5 6 2.815647 GTTGAAGCTCGGAGCCGG 60.816 66.667 25.49 0.00 43.77 6.13
6 7 1.448540 ATGTTGAAGCTCGGAGCCG 60.449 57.895 25.49 1.74 43.77 5.52
7 8 1.372087 CCATGTTGAAGCTCGGAGCC 61.372 60.000 25.49 12.41 43.77 4.70
14 1938 0.674895 GCGTCCTCCATGTTGAAGCT 60.675 55.000 6.91 0.00 31.98 3.74
60 1984 3.785859 GCTCCACCATCTCGGCCA 61.786 66.667 2.24 0.00 39.03 5.36
72 1996 1.980232 CAAATGGCCTGCTGCTCCA 60.980 57.895 3.32 6.27 40.92 3.86
74 1998 1.664321 CTCCAAATGGCCTGCTGCTC 61.664 60.000 3.32 0.00 40.92 4.26
99 2024 5.233083 CCTTCACATAGGCATCATCCTTA 57.767 43.478 0.00 0.00 37.66 2.69
118 2043 0.110486 ATGAACTGTCGGTTGGCCTT 59.890 50.000 3.32 0.00 38.41 4.35
139 2064 3.777925 CGCCGCTTGTTCCTGTCG 61.778 66.667 0.00 0.00 0.00 4.35
161 2086 1.670087 CGACCTCAACGAAGAGCATGT 60.670 52.381 0.00 0.00 34.26 3.21
164 2089 0.241213 CTCGACCTCAACGAAGAGCA 59.759 55.000 0.00 0.00 39.23 4.26
173 2098 1.095600 CATCTCCGTCTCGACCTCAA 58.904 55.000 0.00 0.00 0.00 3.02
174 2099 0.748367 CCATCTCCGTCTCGACCTCA 60.748 60.000 0.00 0.00 0.00 3.86
226 2151 1.878522 GAGTACATGGACGGCAGCG 60.879 63.158 1.41 0.00 0.00 5.18
227 2152 0.807667 CTGAGTACATGGACGGCAGC 60.808 60.000 17.37 2.09 0.00 5.25
228 2153 0.817654 TCTGAGTACATGGACGGCAG 59.182 55.000 21.29 21.29 0.00 4.85
229 2154 0.817654 CTCTGAGTACATGGACGGCA 59.182 55.000 1.41 4.48 0.00 5.69
230 2155 0.528684 GCTCTGAGTACATGGACGGC 60.529 60.000 1.41 0.00 0.00 5.68
231 2156 0.103208 GGCTCTGAGTACATGGACGG 59.897 60.000 1.41 0.00 0.00 4.79
232 2157 0.248661 CGGCTCTGAGTACATGGACG 60.249 60.000 1.41 0.00 0.00 4.79
245 2170 1.075970 TATCTCTGTGCCCGGCTCT 60.076 57.895 11.61 0.00 0.00 4.09
250 2175 0.103208 GTCCACTATCTCTGTGCCCG 59.897 60.000 0.00 0.00 34.38 6.13
279 2205 8.046107 ACTACGTAGATCAAGTACCTTAGTCTT 58.954 37.037 28.74 0.00 0.00 3.01
307 2233 6.464895 AACATGCAAAACATAAAATCCACG 57.535 33.333 0.00 0.00 36.64 4.94
351 2279 3.073798 TGCATCCGAATACCCCATACAAT 59.926 43.478 0.00 0.00 0.00 2.71
353 2281 2.038426 CTGCATCCGAATACCCCATACA 59.962 50.000 0.00 0.00 0.00 2.29
366 2294 3.431922 AAATTTGCTCATCTGCATCCG 57.568 42.857 0.00 0.00 42.96 4.18
372 2300 3.489738 CCGCCCTTAAATTTGCTCATCTG 60.490 47.826 0.00 0.00 0.00 2.90
373 2301 2.689983 CCGCCCTTAAATTTGCTCATCT 59.310 45.455 0.00 0.00 0.00 2.90
410 2338 2.662700 GGATACACTTAGATGCGTCCG 58.337 52.381 1.23 0.00 0.00 4.79
414 2342 2.794910 CCAACGGATACACTTAGATGCG 59.205 50.000 0.00 0.00 41.96 4.73
416 2344 2.794910 CGCCAACGGATACACTTAGATG 59.205 50.000 0.00 0.00 34.97 2.90
417 2345 2.429610 ACGCCAACGGATACACTTAGAT 59.570 45.455 0.00 0.00 46.04 1.98
421 2349 1.533731 CAAACGCCAACGGATACACTT 59.466 47.619 0.00 0.00 46.04 3.16
423 2351 1.127951 CTCAAACGCCAACGGATACAC 59.872 52.381 0.00 0.00 46.04 2.90
427 2355 0.034896 ACTCTCAAACGCCAACGGAT 59.965 50.000 0.00 0.00 46.04 4.18
432 2360 0.105224 TTCGGACTCTCAAACGCCAA 59.895 50.000 0.00 0.00 0.00 4.52
433 2361 0.320374 ATTCGGACTCTCAAACGCCA 59.680 50.000 0.00 0.00 0.00 5.69
436 2364 3.741344 AGACAAATTCGGACTCTCAAACG 59.259 43.478 0.00 0.00 0.00 3.60
441 2369 4.794246 CGAAGTAGACAAATTCGGACTCTC 59.206 45.833 0.11 0.00 41.50 3.20
444 2372 4.483311 GTCGAAGTAGACAAATTCGGACT 58.517 43.478 7.60 0.00 44.42 3.85
450 2378 5.633830 TCTACGGTCGAAGTAGACAAATT 57.366 39.130 21.22 0.00 43.76 1.82
482 2410 5.681954 GCAAGGAAAATATGCTGTGCCATAA 60.682 40.000 0.00 0.00 37.12 1.90
488 2416 2.480073 CGGGCAAGGAAAATATGCTGTG 60.480 50.000 0.00 0.00 39.94 3.66
492 2420 0.249447 GCCGGGCAAGGAAAATATGC 60.249 55.000 15.62 0.00 39.33 3.14
511 2439 4.864247 CCGAAAAGTTCATAGGCCAATTTG 59.136 41.667 5.01 0.00 0.00 2.32
531 2459 3.872182 TGTCGACTTCAAATTTCAACCGA 59.128 39.130 17.92 0.00 0.00 4.69
532 2460 4.203950 TGTCGACTTCAAATTTCAACCG 57.796 40.909 17.92 0.00 0.00 4.44
533 2461 5.757886 TCATGTCGACTTCAAATTTCAACC 58.242 37.500 17.92 0.00 0.00 3.77
589 2517 1.138069 TGCAGACCAAGAGTGTCGAAA 59.862 47.619 0.00 0.00 37.80 3.46
590 2518 0.750249 TGCAGACCAAGAGTGTCGAA 59.250 50.000 0.00 0.00 37.80 3.71
722 2653 1.308069 ATGTGACGATTGGCTGGTGC 61.308 55.000 0.00 0.00 38.76 5.01
762 2738 6.206042 AGTATAATTGACTGGGGAGAAGTCT 58.794 40.000 5.29 0.00 43.69 3.24
798 2774 0.394565 GGCCAGTGGACCTATGCTAG 59.605 60.000 15.20 0.00 0.00 3.42
799 2775 0.031111 AGGCCAGTGGACCTATGCTA 60.031 55.000 19.90 0.00 33.38 3.49
800 2776 1.307343 AGGCCAGTGGACCTATGCT 60.307 57.895 19.90 0.00 33.38 3.79
845 3123 0.678684 TAGTGGCATCGTCACGAGGA 60.679 55.000 17.54 0.00 43.57 3.71
944 3222 0.036164 AACTAACCATGCGTGCCTCA 59.964 50.000 0.00 0.00 0.00 3.86
994 3272 0.820482 CTTGCATCATCCATCGGCCA 60.820 55.000 2.24 0.00 0.00 5.36
1007 3285 1.695597 CCCTCCTCCTCCCTTGCAT 60.696 63.158 0.00 0.00 0.00 3.96
1008 3286 2.285668 CCCTCCTCCTCCCTTGCA 60.286 66.667 0.00 0.00 0.00 4.08
1009 3287 3.093172 CCCCTCCTCCTCCCTTGC 61.093 72.222 0.00 0.00 0.00 4.01
1010 3288 3.093172 GCCCCTCCTCCTCCCTTG 61.093 72.222 0.00 0.00 0.00 3.61
1011 3289 4.806339 CGCCCCTCCTCCTCCCTT 62.806 72.222 0.00 0.00 0.00 3.95
1031 3309 3.199677 CTCGAGTACGTGATCCTCTTCT 58.800 50.000 3.62 0.00 40.69 2.85
1108 3386 3.429141 CAGCAGCAGGTGGAAGCG 61.429 66.667 0.86 0.00 40.95 4.68
1286 5409 1.134907 GGATCTGTAGCCGGTTTCGAA 60.135 52.381 1.90 0.00 39.00 3.71
1288 5411 0.174845 TGGATCTGTAGCCGGTTTCG 59.825 55.000 1.90 0.00 32.07 3.46
1339 5476 2.430465 ACTCATCATCAAGTGCACCAC 58.570 47.619 14.63 0.00 34.10 4.16
1358 5495 5.404946 CAAACCAATCCATCAGTCATCAAC 58.595 41.667 0.00 0.00 0.00 3.18
1359 5496 4.463539 CCAAACCAATCCATCAGTCATCAA 59.536 41.667 0.00 0.00 0.00 2.57
1360 5497 4.018490 CCAAACCAATCCATCAGTCATCA 58.982 43.478 0.00 0.00 0.00 3.07
1361 5498 4.019174 ACCAAACCAATCCATCAGTCATC 58.981 43.478 0.00 0.00 0.00 2.92
1362 5499 3.765511 CACCAAACCAATCCATCAGTCAT 59.234 43.478 0.00 0.00 0.00 3.06
1363 5500 3.156293 CACCAAACCAATCCATCAGTCA 58.844 45.455 0.00 0.00 0.00 3.41
1364 5501 3.157087 ACACCAAACCAATCCATCAGTC 58.843 45.455 0.00 0.00 0.00 3.51
1365 5502 3.243359 ACACCAAACCAATCCATCAGT 57.757 42.857 0.00 0.00 0.00 3.41
1371 5508 3.057526 GCTCTGTTACACCAAACCAATCC 60.058 47.826 0.00 0.00 0.00 3.01
1377 5514 0.872388 CCGGCTCTGTTACACCAAAC 59.128 55.000 0.00 0.00 0.00 2.93
1469 5606 8.905103 ATCTACGGCATTATGTTAAACAAAAC 57.095 30.769 0.00 0.00 0.00 2.43
1504 5641 4.162690 GTCCTTCGCTCCGGCCAT 62.163 66.667 2.24 0.00 34.44 4.40
1508 5645 0.447801 CAAAATGTCCTTCGCTCCGG 59.552 55.000 0.00 0.00 0.00 5.14
1786 5945 1.822990 CTCTACTGAACCGGCCACTTA 59.177 52.381 0.00 0.00 0.00 2.24
1952 6111 1.336980 GCTCGGAAAGTTCCTTCTCGT 60.337 52.381 8.41 0.00 45.33 4.18
1989 6148 1.361668 CTATGTGTGGTGGCGCTGAC 61.362 60.000 7.64 4.23 0.00 3.51
2323 6482 2.031516 CGCACAGCCTGGTCTTGAG 61.032 63.158 0.00 0.00 0.00 3.02
2451 6613 2.970639 CGGTCGTCCATGGACAGT 59.029 61.111 37.42 0.00 44.77 3.55
2453 6615 2.994995 AGCGGTCGTCCATGGACA 60.995 61.111 37.42 24.44 44.77 4.02
2460 6622 2.105128 CTCATCCAGCGGTCGTCC 59.895 66.667 0.00 0.00 0.00 4.79
2464 6626 1.142748 CTGGTCTCATCCAGCGGTC 59.857 63.158 0.00 0.00 46.53 4.79
2465 6627 3.303189 CTGGTCTCATCCAGCGGT 58.697 61.111 0.00 0.00 46.53 5.68
2470 6632 3.511540 CAGAGTTACACTGGTCTCATCCA 59.488 47.826 1.85 0.00 36.00 3.41
2479 6655 4.651778 TCCCAAATTCAGAGTTACACTGG 58.348 43.478 9.71 0.00 36.22 4.00
2492 6668 2.875933 TCGACGGCATAATCCCAAATTC 59.124 45.455 0.00 0.00 0.00 2.17
2495 6671 2.631160 ATCGACGGCATAATCCCAAA 57.369 45.000 0.00 0.00 0.00 3.28
2517 6693 8.579006 TGACTAAAATGCAATATGGAATCCATC 58.421 33.333 19.39 4.86 40.74 3.51
2628 6834 8.758829 ACCCTAAAAACTCTCAATTTTGAACTT 58.241 29.630 0.00 0.00 36.64 2.66
2629 6835 8.306313 ACCCTAAAAACTCTCAATTTTGAACT 57.694 30.769 0.00 0.00 36.64 3.01
2630 6836 9.459640 GTACCCTAAAAACTCTCAATTTTGAAC 57.540 33.333 0.00 0.00 36.64 3.18
2631 6837 9.191479 TGTACCCTAAAAACTCTCAATTTTGAA 57.809 29.630 0.00 0.00 36.64 2.69
2632 6838 8.754991 TGTACCCTAAAAACTCTCAATTTTGA 57.245 30.769 0.00 0.00 35.57 2.69
2633 6839 9.981114 ATTGTACCCTAAAAACTCTCAATTTTG 57.019 29.630 0.00 0.00 31.62 2.44
2708 6916 0.245539 TTAGCCTCGGACCAAACTCG 59.754 55.000 0.00 0.00 0.00 4.18
2736 6944 6.993786 TTCACGTGAAAGCATAAATCCATA 57.006 33.333 27.94 0.00 0.00 2.74
2737 6945 5.895636 TTCACGTGAAAGCATAAATCCAT 57.104 34.783 27.94 0.00 0.00 3.41
2762 6974 5.129634 TGGATCTGCGCCTTTGATTATTAA 58.870 37.500 4.18 0.00 0.00 1.40
2763 6975 4.713553 TGGATCTGCGCCTTTGATTATTA 58.286 39.130 4.18 0.00 0.00 0.98
2783 6996 2.367377 TGGATGAGGGAGGCCTGG 60.367 66.667 12.00 0.00 0.00 4.45
2819 7032 4.394712 GTGGAGGACCTGGTGGCG 62.395 72.222 2.82 0.00 36.63 5.69
2840 7060 1.911293 GCAATTTCGCGCTCCAGTGA 61.911 55.000 5.56 0.00 0.00 3.41
2852 7072 5.545658 TCATCCGTAAGTGAAGCAATTTC 57.454 39.130 0.00 0.00 36.29 2.17
2853 7073 5.677091 GCATCATCCGTAAGTGAAGCAATTT 60.677 40.000 0.00 0.00 38.52 1.82
2854 7074 4.201950 GCATCATCCGTAAGTGAAGCAATT 60.202 41.667 0.00 0.00 38.52 2.32
2855 7075 3.313526 GCATCATCCGTAAGTGAAGCAAT 59.686 43.478 0.00 0.00 38.52 3.56
2856 7076 2.677836 GCATCATCCGTAAGTGAAGCAA 59.322 45.455 0.00 0.00 38.52 3.91
2857 7077 2.093500 AGCATCATCCGTAAGTGAAGCA 60.093 45.455 5.55 0.00 40.44 3.91
2858 7078 2.555199 AGCATCATCCGTAAGTGAAGC 58.445 47.619 0.00 0.00 38.83 3.86
2859 7079 4.207224 CGTAAGCATCATCCGTAAGTGAAG 59.793 45.833 0.00 0.00 0.00 3.02
2860 7080 4.109766 CGTAAGCATCATCCGTAAGTGAA 58.890 43.478 0.00 0.00 0.00 3.18
2861 7081 3.490249 CCGTAAGCATCATCCGTAAGTGA 60.490 47.826 0.00 0.00 0.00 3.41
2862 7082 2.794910 CCGTAAGCATCATCCGTAAGTG 59.205 50.000 0.00 0.00 0.00 3.16
2863 7083 2.691526 TCCGTAAGCATCATCCGTAAGT 59.308 45.455 0.00 0.00 0.00 2.24
2864 7084 3.364889 TCCGTAAGCATCATCCGTAAG 57.635 47.619 0.00 0.00 0.00 2.34
2865 7085 3.804786 TTCCGTAAGCATCATCCGTAA 57.195 42.857 0.00 0.00 0.00 3.18
2866 7086 3.131577 AGTTTCCGTAAGCATCATCCGTA 59.868 43.478 0.00 0.00 0.00 4.02
2867 7087 2.093658 AGTTTCCGTAAGCATCATCCGT 60.094 45.455 0.00 0.00 0.00 4.69
2868 7088 2.285220 CAGTTTCCGTAAGCATCATCCG 59.715 50.000 0.00 0.00 0.00 4.18
2869 7089 3.270877 ACAGTTTCCGTAAGCATCATCC 58.729 45.455 0.00 0.00 0.00 3.51
2870 7090 3.000322 CGACAGTTTCCGTAAGCATCATC 60.000 47.826 0.00 0.00 0.00 2.92
2871 7091 2.930040 CGACAGTTTCCGTAAGCATCAT 59.070 45.455 0.00 0.00 0.00 2.45
2872 7092 2.288579 ACGACAGTTTCCGTAAGCATCA 60.289 45.455 0.00 0.00 37.23 3.07
2873 7093 2.334838 ACGACAGTTTCCGTAAGCATC 58.665 47.619 0.00 0.00 37.23 3.91
2874 7094 2.450609 ACGACAGTTTCCGTAAGCAT 57.549 45.000 0.00 0.00 37.23 3.79
2875 7095 2.664916 GTACGACAGTTTCCGTAAGCA 58.335 47.619 0.00 0.00 41.97 3.91
2876 7096 1.645751 CGTACGACAGTTTCCGTAAGC 59.354 52.381 10.44 0.00 41.97 3.09
2877 7097 2.095768 TCCGTACGACAGTTTCCGTAAG 60.096 50.000 18.76 0.00 41.97 2.34
2878 7098 1.876799 TCCGTACGACAGTTTCCGTAA 59.123 47.619 18.76 0.00 41.97 3.18
2879 7099 1.196808 GTCCGTACGACAGTTTCCGTA 59.803 52.381 18.76 0.00 41.54 4.02
2880 7100 0.040067 GTCCGTACGACAGTTTCCGT 60.040 55.000 18.76 0.00 41.54 4.69
2881 7101 0.040157 TGTCCGTACGACAGTTTCCG 60.040 55.000 18.76 0.00 46.80 4.30
2882 7102 3.871775 TGTCCGTACGACAGTTTCC 57.128 52.632 18.76 0.00 46.80 3.13
2889 7109 0.801067 GGCACATCTGTCCGTACGAC 60.801 60.000 18.76 13.34 42.33 4.34
2890 7110 1.245376 TGGCACATCTGTCCGTACGA 61.245 55.000 18.76 0.00 0.00 3.43
2891 7111 0.802222 CTGGCACATCTGTCCGTACG 60.802 60.000 8.69 8.69 38.20 3.67
2892 7112 1.084370 GCTGGCACATCTGTCCGTAC 61.084 60.000 0.00 0.00 38.20 3.67
2893 7113 1.218047 GCTGGCACATCTGTCCGTA 59.782 57.895 0.00 0.00 38.20 4.02
2894 7114 2.046892 GCTGGCACATCTGTCCGT 60.047 61.111 0.00 0.00 38.20 4.69
2895 7115 3.190849 CGCTGGCACATCTGTCCG 61.191 66.667 0.00 0.00 38.20 4.79
2896 7116 3.503363 GCGCTGGCACATCTGTCC 61.503 66.667 0.00 0.00 38.20 4.02
2897 7117 2.578163 TAGGCGCTGGCACATCTGTC 62.578 60.000 7.64 0.00 42.47 3.51
2898 7118 2.184020 TTAGGCGCTGGCACATCTGT 62.184 55.000 7.64 0.00 42.47 3.41
2899 7119 0.816825 ATTAGGCGCTGGCACATCTG 60.817 55.000 7.64 0.00 42.47 2.90
2900 7120 0.107017 AATTAGGCGCTGGCACATCT 60.107 50.000 7.64 0.00 42.47 2.90
2901 7121 0.740737 AAATTAGGCGCTGGCACATC 59.259 50.000 7.64 0.00 42.47 3.06
2902 7122 2.051334 TAAATTAGGCGCTGGCACAT 57.949 45.000 7.64 0.00 42.47 3.21
2903 7123 1.946768 GATAAATTAGGCGCTGGCACA 59.053 47.619 7.64 0.00 42.47 4.57
2904 7124 1.266989 GGATAAATTAGGCGCTGGCAC 59.733 52.381 7.64 0.00 42.47 5.01
2905 7125 1.604604 GGATAAATTAGGCGCTGGCA 58.395 50.000 7.64 0.00 42.47 4.92
2906 7126 0.881796 GGGATAAATTAGGCGCTGGC 59.118 55.000 7.64 0.00 38.90 4.85
2907 7127 2.427506 GAGGGATAAATTAGGCGCTGG 58.572 52.381 7.64 0.00 0.00 4.85
2908 7128 2.427506 GGAGGGATAAATTAGGCGCTG 58.572 52.381 7.64 0.00 0.00 5.18
2909 7129 1.351350 GGGAGGGATAAATTAGGCGCT 59.649 52.381 7.64 0.00 0.00 5.92
2910 7130 1.613520 GGGGAGGGATAAATTAGGCGC 60.614 57.143 0.00 0.00 0.00 6.53
2911 7131 1.004394 GGGGGAGGGATAAATTAGGCG 59.996 57.143 0.00 0.00 0.00 5.52
2912 7132 2.041755 CAGGGGGAGGGATAAATTAGGC 59.958 54.545 0.00 0.00 0.00 3.93
2913 7133 3.609162 TCAGGGGGAGGGATAAATTAGG 58.391 50.000 0.00 0.00 0.00 2.69
2914 7134 5.867757 ATTCAGGGGGAGGGATAAATTAG 57.132 43.478 0.00 0.00 0.00 1.73
2915 7135 6.620429 GAAATTCAGGGGGAGGGATAAATTA 58.380 40.000 0.00 0.00 0.00 1.40
2916 7136 5.467738 GAAATTCAGGGGGAGGGATAAATT 58.532 41.667 0.00 0.00 0.00 1.82
2917 7137 4.447762 CGAAATTCAGGGGGAGGGATAAAT 60.448 45.833 0.00 0.00 0.00 1.40
2918 7138 3.117663 CGAAATTCAGGGGGAGGGATAAA 60.118 47.826 0.00 0.00 0.00 1.40
2919 7139 2.441750 CGAAATTCAGGGGGAGGGATAA 59.558 50.000 0.00 0.00 0.00 1.75
2920 7140 2.054799 CGAAATTCAGGGGGAGGGATA 58.945 52.381 0.00 0.00 0.00 2.59
2921 7141 0.846693 CGAAATTCAGGGGGAGGGAT 59.153 55.000 0.00 0.00 0.00 3.85
2922 7142 1.279025 CCGAAATTCAGGGGGAGGGA 61.279 60.000 0.00 0.00 0.00 4.20
2923 7143 1.227383 CCGAAATTCAGGGGGAGGG 59.773 63.158 0.00 0.00 0.00 4.30
2924 7144 1.227383 CCCGAAATTCAGGGGGAGG 59.773 63.158 12.87 0.00 43.90 4.30
2925 7145 4.986467 CCCGAAATTCAGGGGGAG 57.014 61.111 12.87 0.00 43.90 4.30
2930 7150 0.468029 CCCCATCCCCGAAATTCAGG 60.468 60.000 0.00 0.00 0.00 3.86
2931 7151 1.109323 GCCCCATCCCCGAAATTCAG 61.109 60.000 0.00 0.00 0.00 3.02
2932 7152 1.076339 GCCCCATCCCCGAAATTCA 60.076 57.895 0.00 0.00 0.00 2.57
2933 7153 1.832608 GGCCCCATCCCCGAAATTC 60.833 63.158 0.00 0.00 0.00 2.17
2934 7154 2.282106 GGCCCCATCCCCGAAATT 59.718 61.111 0.00 0.00 0.00 1.82
2935 7155 3.832846 GGGCCCCATCCCCGAAAT 61.833 66.667 12.23 0.00 40.51 2.17
2941 7161 2.638025 TAGAAGGAGGGCCCCATCCC 62.638 65.000 23.51 17.25 46.93 3.85
2942 7162 0.697854 TTAGAAGGAGGGCCCCATCC 60.698 60.000 21.43 20.84 34.66 3.51
2943 7163 1.352687 GATTAGAAGGAGGGCCCCATC 59.647 57.143 21.43 10.92 34.66 3.51
2944 7164 1.060244 AGATTAGAAGGAGGGCCCCAT 60.060 52.381 21.43 4.56 34.66 4.00
2945 7165 0.346932 AGATTAGAAGGAGGGCCCCA 59.653 55.000 21.43 0.00 34.66 4.96
2946 7166 0.767998 CAGATTAGAAGGAGGGCCCC 59.232 60.000 21.43 10.33 34.66 5.80
2947 7167 1.807814 TCAGATTAGAAGGAGGGCCC 58.192 55.000 16.46 16.46 33.31 5.80
2948 7168 2.975489 TCATCAGATTAGAAGGAGGGCC 59.025 50.000 0.00 0.00 0.00 5.80
2949 7169 4.906747 ATCATCAGATTAGAAGGAGGGC 57.093 45.455 0.00 0.00 0.00 5.19
2950 7170 6.835174 TGAAATCATCAGATTAGAAGGAGGG 58.165 40.000 0.00 0.00 43.52 4.30
2951 7171 8.921353 AATGAAATCATCAGATTAGAAGGAGG 57.079 34.615 0.00 0.00 43.52 4.30
2953 7173 9.910267 TGAAATGAAATCATCAGATTAGAAGGA 57.090 29.630 0.00 0.00 43.52 3.36
2957 7177 9.334947 GGACTGAAATGAAATCATCAGATTAGA 57.665 33.333 16.85 0.00 43.52 2.10
2958 7178 8.281194 CGGACTGAAATGAAATCATCAGATTAG 58.719 37.037 16.85 5.42 43.52 1.73
2959 7179 7.770433 ACGGACTGAAATGAAATCATCAGATTA 59.230 33.333 16.85 0.00 43.52 1.75
2960 7180 6.600822 ACGGACTGAAATGAAATCATCAGATT 59.399 34.615 16.85 0.60 46.20 2.40
2961 7181 6.118170 ACGGACTGAAATGAAATCATCAGAT 58.882 36.000 16.85 5.45 42.53 2.90
2962 7182 5.491070 ACGGACTGAAATGAAATCATCAGA 58.509 37.500 16.85 0.00 42.53 3.27
2963 7183 5.808042 ACGGACTGAAATGAAATCATCAG 57.192 39.130 10.88 10.88 42.53 2.90
2964 7184 6.878923 ACTTACGGACTGAAATGAAATCATCA 59.121 34.615 0.00 0.00 43.67 3.07
2965 7185 7.308782 ACTTACGGACTGAAATGAAATCATC 57.691 36.000 0.00 0.00 35.10 2.92
2966 7186 7.687941 AACTTACGGACTGAAATGAAATCAT 57.312 32.000 0.00 0.00 38.41 2.45
2967 7187 7.504924 AAACTTACGGACTGAAATGAAATCA 57.495 32.000 0.00 0.00 0.00 2.57
2968 7188 9.887406 TTTAAACTTACGGACTGAAATGAAATC 57.113 29.630 0.00 0.00 0.00 2.17
2970 7190 9.672086 CATTTAAACTTACGGACTGAAATGAAA 57.328 29.630 0.00 0.00 35.87 2.69
2971 7191 7.806014 GCATTTAAACTTACGGACTGAAATGAA 59.194 33.333 7.90 0.00 35.87 2.57
2972 7192 7.302524 GCATTTAAACTTACGGACTGAAATGA 58.697 34.615 7.90 0.00 35.87 2.57
2973 7193 6.248420 CGCATTTAAACTTACGGACTGAAATG 59.752 38.462 0.00 0.00 36.55 2.32
2974 7194 6.072893 ACGCATTTAAACTTACGGACTGAAAT 60.073 34.615 0.00 0.00 0.00 2.17
2975 7195 5.236911 ACGCATTTAAACTTACGGACTGAAA 59.763 36.000 0.00 0.00 0.00 2.69
2976 7196 4.751098 ACGCATTTAAACTTACGGACTGAA 59.249 37.500 0.00 0.00 0.00 3.02
2977 7197 4.309099 ACGCATTTAAACTTACGGACTGA 58.691 39.130 0.00 0.00 0.00 3.41
2978 7198 4.657075 ACGCATTTAAACTTACGGACTG 57.343 40.909 0.00 0.00 0.00 3.51
2979 7199 4.751098 TCAACGCATTTAAACTTACGGACT 59.249 37.500 0.00 0.00 0.00 3.85
2980 7200 5.021120 TCAACGCATTTAAACTTACGGAC 57.979 39.130 0.00 0.00 0.00 4.79
2981 7201 5.670149 TTCAACGCATTTAAACTTACGGA 57.330 34.783 0.00 0.00 0.00 4.69
2982 7202 5.910723 ACTTTCAACGCATTTAAACTTACGG 59.089 36.000 0.00 0.00 0.00 4.02
2983 7203 6.963017 ACTTTCAACGCATTTAAACTTACG 57.037 33.333 0.00 0.00 0.00 3.18
2984 7204 7.054998 GCAACTTTCAACGCATTTAAACTTAC 58.945 34.615 0.00 0.00 0.00 2.34
2985 7205 6.199342 GGCAACTTTCAACGCATTTAAACTTA 59.801 34.615 0.00 0.00 0.00 2.24
2986 7206 5.006261 GGCAACTTTCAACGCATTTAAACTT 59.994 36.000 0.00 0.00 0.00 2.66
2987 7207 4.506288 GGCAACTTTCAACGCATTTAAACT 59.494 37.500 0.00 0.00 0.00 2.66
2988 7208 4.757502 GGCAACTTTCAACGCATTTAAAC 58.242 39.130 0.00 0.00 0.00 2.01
3005 7225 3.600388 AGATGCTACACTTACAGGCAAC 58.400 45.455 0.00 0.00 36.49 4.17
3006 7226 3.515502 AGAGATGCTACACTTACAGGCAA 59.484 43.478 0.00 0.00 36.49 4.52
3007 7227 3.099905 AGAGATGCTACACTTACAGGCA 58.900 45.455 0.00 0.00 37.32 4.75
3008 7228 3.491792 GGAGAGATGCTACACTTACAGGC 60.492 52.174 0.00 0.00 0.00 4.85
3009 7229 3.701542 TGGAGAGATGCTACACTTACAGG 59.298 47.826 0.00 0.00 30.54 4.00
3010 7230 4.991153 TGGAGAGATGCTACACTTACAG 57.009 45.455 0.00 0.00 30.54 2.74
3011 7231 5.395657 CCAATGGAGAGATGCTACACTTACA 60.396 44.000 0.00 0.00 41.23 2.41
3012 7232 5.053145 CCAATGGAGAGATGCTACACTTAC 58.947 45.833 0.00 0.00 41.23 2.34
3013 7233 4.962362 TCCAATGGAGAGATGCTACACTTA 59.038 41.667 0.00 0.00 41.23 2.24
3014 7234 3.776969 TCCAATGGAGAGATGCTACACTT 59.223 43.478 0.00 0.00 41.23 3.16
3015 7235 3.378512 TCCAATGGAGAGATGCTACACT 58.621 45.455 0.00 0.00 41.23 3.55
3016 7236 3.827008 TCCAATGGAGAGATGCTACAC 57.173 47.619 0.00 0.00 41.23 2.90
3028 7248 0.397114 TAGAGAGGCGCTCCAATGGA 60.397 55.000 14.92 0.48 45.10 3.41
3029 7249 0.033228 CTAGAGAGGCGCTCCAATGG 59.967 60.000 14.92 0.00 45.10 3.16
3030 7250 0.599728 GCTAGAGAGGCGCTCCAATG 60.600 60.000 14.92 4.12 45.10 2.82
3031 7251 1.045350 TGCTAGAGAGGCGCTCCAAT 61.045 55.000 14.92 0.00 45.10 3.16
3032 7252 1.045350 ATGCTAGAGAGGCGCTCCAA 61.045 55.000 14.92 2.75 45.10 3.53
3033 7253 1.456518 ATGCTAGAGAGGCGCTCCA 60.457 57.895 14.92 6.39 45.10 3.86
3034 7254 1.288752 GATGCTAGAGAGGCGCTCC 59.711 63.158 14.92 0.30 45.10 4.70
3035 7255 1.288752 GGATGCTAGAGAGGCGCTC 59.711 63.158 10.52 10.52 44.29 5.03
3036 7256 2.206536 GGGATGCTAGAGAGGCGCT 61.207 63.158 7.64 0.00 0.00 5.92
3037 7257 2.341911 GGGATGCTAGAGAGGCGC 59.658 66.667 0.00 0.00 0.00 6.53
3038 7258 1.247419 ATCGGGATGCTAGAGAGGCG 61.247 60.000 0.00 0.00 0.00 5.52
3039 7259 0.246086 CATCGGGATGCTAGAGAGGC 59.754 60.000 0.00 0.00 31.39 4.70
3053 7273 4.585526 TAGCGAAGGCGGCATCGG 62.586 66.667 32.54 17.52 46.35 4.18
3073 7293 0.330941 TCAATAGGCATGGGTGTGCA 59.669 50.000 0.00 0.00 46.81 4.57
3077 7297 4.741321 ATTTTGTCAATAGGCATGGGTG 57.259 40.909 0.00 0.00 0.00 4.61
3264 8753 8.970020 ACACATAACAAAATATCACATGACCAT 58.030 29.630 0.00 0.00 0.00 3.55
3280 8769 8.541234 TGGTACAGGTTCATATACACATAACAA 58.459 33.333 0.00 0.00 0.00 2.83
3307 8796 7.983166 ATAGGCTACGACCCCATAATTATTA 57.017 36.000 0.00 0.00 0.00 0.98
3310 8799 6.734532 TCTATAGGCTACGACCCCATAATTA 58.265 40.000 0.00 0.00 0.00 1.40
3315 8804 3.759815 ATCTATAGGCTACGACCCCAT 57.240 47.619 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.