Multiple sequence alignment - TraesCS6A01G166400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G166400 chr6A 100.000 7773 0 0 1 7773 169227560 169219788 0.000000e+00 14355.0
1 TraesCS6A01G166400 chr6A 92.557 4044 254 27 2482 6508 288790067 288794080 0.000000e+00 5757.0
2 TraesCS6A01G166400 chr6A 90.805 2523 204 24 2473 4983 281785066 281782560 0.000000e+00 3349.0
3 TraesCS6A01G166400 chr6A 91.115 2476 193 21 2482 4946 594383060 594385519 0.000000e+00 3328.0
4 TraesCS6A01G166400 chr6A 88.283 2714 254 48 2480 5171 387186812 387184141 0.000000e+00 3192.0
5 TraesCS6A01G166400 chr6A 96.934 1696 26 4 796 2481 171738712 171740391 0.000000e+00 2820.0
6 TraesCS6A01G166400 chr6A 87.728 1369 145 23 3851 5207 221236396 221237753 0.000000e+00 1576.0
7 TraesCS6A01G166400 chr6A 89.465 1158 53 19 921 2070 162911118 162912214 0.000000e+00 1399.0
8 TraesCS6A01G166400 chr6A 95.792 808 33 1 6964 7770 171740812 171741619 0.000000e+00 1303.0
9 TraesCS6A01G166400 chr6A 87.167 1013 107 16 4165 5171 387193117 387192122 0.000000e+00 1129.0
10 TraesCS6A01G166400 chr6A 84.964 971 102 31 5489 6437 102824933 102823985 0.000000e+00 944.0
11 TraesCS6A01G166400 chr6A 88.089 806 76 11 6964 7768 162913640 162914426 0.000000e+00 939.0
12 TraesCS6A01G166400 chr6A 95.662 438 19 0 6509 6946 171740387 171740824 0.000000e+00 704.0
13 TraesCS6A01G166400 chr6A 92.428 449 21 2 6509 6946 162913206 162913652 5.120000e-176 628.0
14 TraesCS6A01G166400 chr6A 86.224 392 23 9 597 975 169254690 169254317 5.650000e-106 396.0
15 TraesCS6A01G166400 chr6A 95.181 249 11 1 4960 5207 221245079 221245327 7.310000e-105 392.0
16 TraesCS6A01G166400 chr6A 85.771 253 23 10 7519 7768 162915695 162915937 1.000000e-63 255.0
17 TraesCS6A01G166400 chr6A 74.349 269 36 20 638 896 162909447 162909692 5.000000e-12 84.2
18 TraesCS6A01G166400 chr4A 91.215 4041 285 45 2482 6508 620361495 620365479 0.000000e+00 5432.0
19 TraesCS6A01G166400 chr4A 90.508 2518 208 26 2477 4983 420798632 420801129 0.000000e+00 3297.0
20 TraesCS6A01G166400 chr4A 90.043 2561 218 27 2480 5023 406734018 406731478 0.000000e+00 3282.0
21 TraesCS6A01G166400 chr4A 91.432 922 70 7 5590 6508 620370007 620370922 0.000000e+00 1256.0
22 TraesCS6A01G166400 chr4A 86.842 684 82 8 5828 6508 469973043 469972365 0.000000e+00 758.0
23 TraesCS6A01G166400 chr4A 80.000 320 60 4 284 601 60031311 60030994 4.690000e-57 233.0
24 TraesCS6A01G166400 chr4A 81.818 187 31 3 389 574 723136334 723136518 3.760000e-33 154.0
25 TraesCS6A01G166400 chr4A 78.431 204 39 4 396 598 723633437 723633636 2.280000e-25 128.0
26 TraesCS6A01G166400 chr4A 85.047 107 13 3 371 476 611406822 611406926 1.070000e-18 106.0
27 TraesCS6A01G166400 chr2A 90.600 2915 228 40 2482 5380 530414290 530411406 0.000000e+00 3823.0
28 TraesCS6A01G166400 chr2A 90.818 2505 209 16 2482 4979 382130158 382127668 0.000000e+00 3332.0
29 TraesCS6A01G166400 chr2A 96.296 162 6 0 5204 5365 170531402 170531241 4.620000e-67 267.0
30 TraesCS6A01G166400 chr2A 95.062 162 8 0 5204 5365 170523699 170523538 1.000000e-63 255.0
31 TraesCS6A01G166400 chr5A 89.143 2929 256 57 2477 5375 212918004 212920900 0.000000e+00 3591.0
32 TraesCS6A01G166400 chr5A 87.622 719 60 22 4683 5380 212912632 212913342 0.000000e+00 808.0
33 TraesCS6A01G166400 chr5A 84.865 740 93 18 5782 6508 334775193 334774460 0.000000e+00 728.0
34 TraesCS6A01G166400 chr5A 93.827 324 14 6 5413 5732 507648579 507648900 4.220000e-132 483.0
35 TraesCS6A01G166400 chr5A 93.671 79 5 0 5061 5139 65414522 65414444 1.370000e-22 119.0
36 TraesCS6A01G166400 chr5A 93.671 79 4 1 5061 5139 356212401 356212324 4.930000e-22 117.0
37 TraesCS6A01G166400 chr5A 92.405 79 6 0 5061 5139 82940591 82940513 6.370000e-21 113.0
38 TraesCS6A01G166400 chr7A 90.978 2505 207 15 2482 4979 479624501 479622009 0.000000e+00 3356.0
39 TraesCS6A01G166400 chr7A 90.215 2555 212 33 2480 5017 497784672 497782139 0.000000e+00 3299.0
40 TraesCS6A01G166400 chr7A 88.357 2757 260 53 2476 5207 165442937 165440217 0.000000e+00 3256.0
41 TraesCS6A01G166400 chr7A 75.652 230 52 4 371 598 571740823 571740596 2.290000e-20 111.0
42 TraesCS6A01G166400 chr1A 91.106 2496 193 25 2477 4962 151422376 151424852 0.000000e+00 3352.0
43 TraesCS6A01G166400 chr1A 89.294 2634 236 40 2482 5094 52317719 52315111 0.000000e+00 3260.0
44 TraesCS6A01G166400 chr1A 95.062 162 8 0 5204 5365 140321396 140321557 1.000000e-63 255.0
45 TraesCS6A01G166400 chr1A 92.593 162 12 0 5204 5365 140313609 140313770 4.690000e-57 233.0
46 TraesCS6A01G166400 chr1A 96.203 79 3 0 5061 5139 438465339 438465417 6.330000e-26 130.0
47 TraesCS6A01G166400 chr1A 93.671 79 5 0 5061 5139 146933096 146933018 1.370000e-22 119.0
48 TraesCS6A01G166400 chr6B 94.509 1894 77 15 597 2481 228757796 228755921 0.000000e+00 2896.0
49 TraesCS6A01G166400 chr6B 93.973 1908 71 18 597 2481 257783283 257781397 0.000000e+00 2846.0
50 TraesCS6A01G166400 chr6B 96.033 1689 51 6 796 2481 230602352 230604027 0.000000e+00 2734.0
51 TraesCS6A01G166400 chr6B 93.696 1269 55 8 6509 7770 257781401 257780151 0.000000e+00 1877.0
52 TraesCS6A01G166400 chr6B 93.218 1268 45 15 6509 7773 228755925 228754696 0.000000e+00 1827.0
53 TraesCS6A01G166400 chr6B 90.694 1268 90 16 6509 7768 230604023 230605270 0.000000e+00 1663.0
54 TraesCS6A01G166400 chr6B 87.356 1392 119 25 825 2201 213521194 213522543 0.000000e+00 1543.0
55 TraesCS6A01G166400 chr6B 87.281 456 45 8 84 536 257783737 257783292 6.960000e-140 508.0
56 TraesCS6A01G166400 chr6B 91.228 285 25 0 2197 2481 213535002 213535286 9.460000e-104 388.0
57 TraesCS6A01G166400 chr6B 91.667 96 8 0 82 177 257792748 257792653 4.890000e-27 134.0
58 TraesCS6A01G166400 chr6D 94.232 1907 70 19 597 2481 146506366 146508254 0.000000e+00 2876.0
59 TraesCS6A01G166400 chr6D 93.337 1906 72 19 597 2481 130213905 130212034 0.000000e+00 2765.0
60 TraesCS6A01G166400 chr6D 95.788 1638 51 5 861 2481 131032865 131031229 0.000000e+00 2627.0
61 TraesCS6A01G166400 chr6D 95.411 1264 50 6 6509 7770 131031233 131029976 0.000000e+00 2006.0
62 TraesCS6A01G166400 chr6D 94.584 1274 50 8 6509 7770 146508250 146509516 0.000000e+00 1953.0
63 TraesCS6A01G166400 chr6D 96.782 870 23 4 6509 7377 130212038 130211173 0.000000e+00 1447.0
64 TraesCS6A01G166400 chr6D 86.453 406 17 9 7368 7773 130211154 130210787 2.020000e-110 411.0
65 TraesCS6A01G166400 chr6D 84.528 265 34 5 278 537 130214175 130213913 1.000000e-63 255.0
66 TraesCS6A01G166400 chr6D 85.957 235 21 6 597 827 131033093 131032867 2.800000e-59 241.0
67 TraesCS6A01G166400 chr6D 93.711 159 10 0 82 240 146504315 146504473 1.010000e-58 239.0
68 TraesCS6A01G166400 chr6D 89.583 96 10 0 82 177 146387620 146387715 1.060000e-23 122.0
69 TraesCS6A01G166400 chr6D 89.362 94 9 1 82 175 130390895 130390803 4.930000e-22 117.0
70 TraesCS6A01G166400 chr6D 91.525 59 5 0 181 239 146390512 146390570 1.800000e-11 82.4
71 TraesCS6A01G166400 chrUn 95.643 1446 56 6 4819 6261 399520757 399522198 0.000000e+00 2314.0
72 TraesCS6A01G166400 chrUn 91.432 922 70 7 5590 6508 279451261 279452176 0.000000e+00 1256.0
73 TraesCS6A01G166400 chrUn 90.978 787 64 6 5725 6508 279445570 279446352 0.000000e+00 1053.0
74 TraesCS6A01G166400 chrUn 93.078 679 39 6 5593 6268 267689188 267688515 0.000000e+00 987.0
75 TraesCS6A01G166400 chrUn 84.069 521 69 12 5493 6004 291576462 291575947 2.520000e-134 490.0
76 TraesCS6A01G166400 chrUn 75.743 202 44 5 401 600 8469373 8469571 6.420000e-16 97.1
77 TraesCS6A01G166400 chrUn 89.831 59 6 0 21 79 72953409 72953467 8.360000e-10 76.8
78 TraesCS6A01G166400 chrUn 89.831 59 6 0 21 79 259736750 259736692 8.360000e-10 76.8
79 TraesCS6A01G166400 chrUn 89.831 59 6 0 21 79 359328727 359328669 8.360000e-10 76.8
80 TraesCS6A01G166400 chrUn 75.138 181 34 8 422 600 385632888 385633059 3.010000e-09 75.0
81 TraesCS6A01G166400 chrUn 75.138 181 34 8 422 600 385690807 385690978 3.010000e-09 75.0
82 TraesCS6A01G166400 chrUn 75.138 181 34 8 422 600 468781003 468781174 3.010000e-09 75.0
83 TraesCS6A01G166400 chr1B 81.342 2176 273 89 2854 4985 415034341 415036427 0.000000e+00 1646.0
84 TraesCS6A01G166400 chr1B 80.260 2229 301 91 2854 5029 324317265 324315123 0.000000e+00 1550.0
85 TraesCS6A01G166400 chr1B 80.332 2171 300 80 2857 4982 501019555 501017467 0.000000e+00 1526.0
86 TraesCS6A01G166400 chr1B 81.011 1306 169 51 3691 4968 88325784 88324530 0.000000e+00 965.0
87 TraesCS6A01G166400 chr1B 97.468 79 2 0 1 79 476814308 476814386 1.360000e-27 135.0
88 TraesCS6A01G166400 chr5B 80.975 2092 275 78 2973 5024 463563061 463561053 0.000000e+00 1544.0
89 TraesCS6A01G166400 chr5B 95.224 691 31 1 1793 2481 84884572 84883882 0.000000e+00 1092.0
90 TraesCS6A01G166400 chr5B 95.152 660 32 0 7114 7773 84883227 84882568 0.000000e+00 1042.0
91 TraesCS6A01G166400 chr5B 91.396 616 38 5 983 1592 84890686 84890080 0.000000e+00 830.0
92 TraesCS6A01G166400 chr5B 94.222 450 16 4 6509 6949 84883886 84883438 0.000000e+00 678.0
93 TraesCS6A01G166400 chr5B 90.400 250 19 3 1548 1797 84890028 84889784 2.710000e-84 324.0
94 TraesCS6A01G166400 chr5B 94.667 150 6 1 6964 7113 84883453 84883306 1.690000e-56 231.0
95 TraesCS6A01G166400 chr5B 86.022 93 13 0 82 174 84891654 84891562 4.960000e-17 100.0
96 TraesCS6A01G166400 chr5B 95.745 47 2 0 1548 1594 84890076 84890030 8.360000e-10 76.8
97 TraesCS6A01G166400 chr3A 93.678 174 11 0 5204 5377 390742532 390742705 2.150000e-65 261.0
98 TraesCS6A01G166400 chr3A 92.135 178 13 1 5204 5380 390750212 390750389 4.660000e-62 250.0
99 TraesCS6A01G166400 chr3A 94.937 79 4 0 1 79 559525198 559525120 2.940000e-24 124.0
100 TraesCS6A01G166400 chr4B 80.000 320 60 4 284 601 498387761 498387444 4.690000e-57 233.0
101 TraesCS6A01G166400 chr4B 92.405 79 5 1 1 79 498389072 498388995 2.290000e-20 111.0
102 TraesCS6A01G166400 chr3D 78.683 319 64 4 285 601 20556433 20556749 7.900000e-50 209.0
103 TraesCS6A01G166400 chr4D 77.914 326 61 7 284 601 402542641 402542319 7.960000e-45 193.0
104 TraesCS6A01G166400 chr4D 92.405 79 6 0 1 79 48694591 48694669 6.370000e-21 113.0
105 TraesCS6A01G166400 chr4D 91.139 79 6 1 1 79 402543957 402543880 1.070000e-18 106.0
106 TraesCS6A01G166400 chr2D 94.937 79 4 0 1 79 20429846 20429768 2.940000e-24 124.0
107 TraesCS6A01G166400 chr1D 94.937 79 4 0 1 79 355003375 355003453 2.940000e-24 124.0
108 TraesCS6A01G166400 chr7B 82.857 140 21 2 426 564 137890832 137890969 1.060000e-23 122.0
109 TraesCS6A01G166400 chr7B 90.141 71 7 0 1 71 419029241 419029171 8.300000e-15 93.5
110 TraesCS6A01G166400 chr3B 93.671 79 5 0 1 79 417736100 417736178 1.370000e-22 119.0
111 TraesCS6A01G166400 chr5D 89.873 79 8 0 1 79 55869703 55869781 1.380000e-17 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G166400 chr6A 169219788 169227560 7772 True 14355.000000 14355 100.000000 1 7773 1 chr6A.!!$R2 7772
1 TraesCS6A01G166400 chr6A 288790067 288794080 4013 False 5757.000000 5757 92.557000 2482 6508 1 chr6A.!!$F3 4026
2 TraesCS6A01G166400 chr6A 281782560 281785066 2506 True 3349.000000 3349 90.805000 2473 4983 1 chr6A.!!$R4 2510
3 TraesCS6A01G166400 chr6A 594383060 594385519 2459 False 3328.000000 3328 91.115000 2482 4946 1 chr6A.!!$F4 2464
4 TraesCS6A01G166400 chr6A 387184141 387186812 2671 True 3192.000000 3192 88.283000 2480 5171 1 chr6A.!!$R5 2691
5 TraesCS6A01G166400 chr6A 171738712 171741619 2907 False 1609.000000 2820 96.129333 796 7770 3 chr6A.!!$F6 6974
6 TraesCS6A01G166400 chr6A 221236396 221237753 1357 False 1576.000000 1576 87.728000 3851 5207 1 chr6A.!!$F1 1356
7 TraesCS6A01G166400 chr6A 387192122 387193117 995 True 1129.000000 1129 87.167000 4165 5171 1 chr6A.!!$R6 1006
8 TraesCS6A01G166400 chr6A 102823985 102824933 948 True 944.000000 944 84.964000 5489 6437 1 chr6A.!!$R1 948
9 TraesCS6A01G166400 chr6A 162909447 162915937 6490 False 661.040000 1399 86.020400 638 7768 5 chr6A.!!$F5 7130
10 TraesCS6A01G166400 chr4A 620361495 620365479 3984 False 5432.000000 5432 91.215000 2482 6508 1 chr4A.!!$F3 4026
11 TraesCS6A01G166400 chr4A 420798632 420801129 2497 False 3297.000000 3297 90.508000 2477 4983 1 chr4A.!!$F1 2506
12 TraesCS6A01G166400 chr4A 406731478 406734018 2540 True 3282.000000 3282 90.043000 2480 5023 1 chr4A.!!$R2 2543
13 TraesCS6A01G166400 chr4A 620370007 620370922 915 False 1256.000000 1256 91.432000 5590 6508 1 chr4A.!!$F4 918
14 TraesCS6A01G166400 chr4A 469972365 469973043 678 True 758.000000 758 86.842000 5828 6508 1 chr4A.!!$R3 680
15 TraesCS6A01G166400 chr2A 530411406 530414290 2884 True 3823.000000 3823 90.600000 2482 5380 1 chr2A.!!$R4 2898
16 TraesCS6A01G166400 chr2A 382127668 382130158 2490 True 3332.000000 3332 90.818000 2482 4979 1 chr2A.!!$R3 2497
17 TraesCS6A01G166400 chr5A 212918004 212920900 2896 False 3591.000000 3591 89.143000 2477 5375 1 chr5A.!!$F2 2898
18 TraesCS6A01G166400 chr5A 212912632 212913342 710 False 808.000000 808 87.622000 4683 5380 1 chr5A.!!$F1 697
19 TraesCS6A01G166400 chr5A 334774460 334775193 733 True 728.000000 728 84.865000 5782 6508 1 chr5A.!!$R3 726
20 TraesCS6A01G166400 chr7A 479622009 479624501 2492 True 3356.000000 3356 90.978000 2482 4979 1 chr7A.!!$R2 2497
21 TraesCS6A01G166400 chr7A 497782139 497784672 2533 True 3299.000000 3299 90.215000 2480 5017 1 chr7A.!!$R3 2537
22 TraesCS6A01G166400 chr7A 165440217 165442937 2720 True 3256.000000 3256 88.357000 2476 5207 1 chr7A.!!$R1 2731
23 TraesCS6A01G166400 chr1A 151422376 151424852 2476 False 3352.000000 3352 91.106000 2477 4962 1 chr1A.!!$F3 2485
24 TraesCS6A01G166400 chr1A 52315111 52317719 2608 True 3260.000000 3260 89.294000 2482 5094 1 chr1A.!!$R1 2612
25 TraesCS6A01G166400 chr6B 228754696 228757796 3100 True 2361.500000 2896 93.863500 597 7773 2 chr6B.!!$R2 7176
26 TraesCS6A01G166400 chr6B 230602352 230605270 2918 False 2198.500000 2734 93.363500 796 7768 2 chr6B.!!$F3 6972
27 TraesCS6A01G166400 chr6B 257780151 257783737 3586 True 1743.666667 2846 91.650000 84 7770 3 chr6B.!!$R3 7686
28 TraesCS6A01G166400 chr6B 213521194 213522543 1349 False 1543.000000 1543 87.356000 825 2201 1 chr6B.!!$F1 1376
29 TraesCS6A01G166400 chr6D 146504315 146509516 5201 False 1689.333333 2876 94.175667 82 7770 3 chr6D.!!$F2 7688
30 TraesCS6A01G166400 chr6D 131029976 131033093 3117 True 1624.666667 2627 92.385333 597 7770 3 chr6D.!!$R3 7173
31 TraesCS6A01G166400 chr6D 130210787 130214175 3388 True 1219.500000 2765 90.275000 278 7773 4 chr6D.!!$R2 7495
32 TraesCS6A01G166400 chrUn 399520757 399522198 1441 False 2314.000000 2314 95.643000 4819 6261 1 chrUn.!!$F7 1442
33 TraesCS6A01G166400 chrUn 279451261 279452176 915 False 1256.000000 1256 91.432000 5590 6508 1 chrUn.!!$F4 918
34 TraesCS6A01G166400 chrUn 279445570 279446352 782 False 1053.000000 1053 90.978000 5725 6508 1 chrUn.!!$F3 783
35 TraesCS6A01G166400 chrUn 267688515 267689188 673 True 987.000000 987 93.078000 5593 6268 1 chrUn.!!$R2 675
36 TraesCS6A01G166400 chrUn 291575947 291576462 515 True 490.000000 490 84.069000 5493 6004 1 chrUn.!!$R3 511
37 TraesCS6A01G166400 chr1B 415034341 415036427 2086 False 1646.000000 1646 81.342000 2854 4985 1 chr1B.!!$F1 2131
38 TraesCS6A01G166400 chr1B 324315123 324317265 2142 True 1550.000000 1550 80.260000 2854 5029 1 chr1B.!!$R2 2175
39 TraesCS6A01G166400 chr1B 501017467 501019555 2088 True 1526.000000 1526 80.332000 2857 4982 1 chr1B.!!$R3 2125
40 TraesCS6A01G166400 chr1B 88324530 88325784 1254 True 965.000000 965 81.011000 3691 4968 1 chr1B.!!$R1 1277
41 TraesCS6A01G166400 chr5B 463561053 463563061 2008 True 1544.000000 1544 80.975000 2973 5024 1 chr5B.!!$R1 2051
42 TraesCS6A01G166400 chr5B 84882568 84884572 2004 True 760.750000 1092 94.816250 1793 7773 4 chr5B.!!$R2 5980
43 TraesCS6A01G166400 chr5B 84889784 84891654 1870 True 332.700000 830 90.890750 82 1797 4 chr5B.!!$R3 1715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
96 97 0.040425 CTTCAACGCAAAAGGACCCG 60.040 55.000 0.00 0.0 0.00 5.28 F
969 4636 0.175760 CTCCTTCTCCCGCGAAATCA 59.824 55.000 8.23 0.0 0.00 2.57 F
2494 6945 0.645868 GCATCTTGTAACGTCCTCGC 59.354 55.000 0.00 0.0 41.18 5.03 F
2919 7385 0.537188 AATCTCGCACCCTCACGATT 59.463 50.000 0.00 0.0 37.72 3.34 F
3557 8055 1.140589 CTCAGAGTAGCACTGGCCG 59.859 63.158 0.00 0.0 42.56 6.13 F
3697 8208 1.143073 GGTGAACTGTCAAGGGGTTCT 59.857 52.381 0.00 0.0 39.73 3.01 F
5207 9815 0.832135 TTGCTCCTGGTCGTCTCCTT 60.832 55.000 0.00 0.0 0.00 3.36 F
6126 10783 0.736325 CGGCGACTGTTTTCGGAGAT 60.736 55.000 0.00 0.0 39.50 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1047 4714 0.678366 GGAGAGCTCCGACTGAGACA 60.678 60.000 10.93 0.0 44.42 3.41 R
2496 6947 0.959553 CACGTGGGAGATATAGCCGT 59.040 55.000 7.95 0.0 0.00 5.68 R
4397 8954 1.063469 CCGTCAATATGCAACCCGTTC 59.937 52.381 0.00 0.0 0.00 3.95 R
4886 9458 1.251251 AGCCCTTCAAGTTCATGCAC 58.749 50.000 0.00 0.0 0.00 4.57 R
5101 9683 3.028098 TACCGGCCTCCCTCCTCT 61.028 66.667 0.00 0.0 0.00 3.69 R
5479 10087 3.461773 GCCGGAGCAGAGCACCTA 61.462 66.667 5.05 0.0 37.16 3.08 R
6202 10861 0.586802 GACCGCCTGTCAAGTTTCAC 59.413 55.000 0.00 0.0 43.85 3.18 R
6982 11665 1.401552 CACATATTGTGGTGCTTCCCG 59.598 52.381 0.00 0.0 44.27 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.247736 TGCTTCTCTTTCTCCTCGGC 59.752 55.000 0.00 0.00 0.00 5.54
20 21 0.461163 GCTTCTCTTTCTCCTCGGCC 60.461 60.000 0.00 0.00 0.00 6.13
21 22 0.898320 CTTCTCTTTCTCCTCGGCCA 59.102 55.000 2.24 0.00 0.00 5.36
22 23 1.484240 CTTCTCTTTCTCCTCGGCCAT 59.516 52.381 2.24 0.00 0.00 4.40
23 24 2.454336 TCTCTTTCTCCTCGGCCATA 57.546 50.000 2.24 0.00 0.00 2.74
24 25 2.311463 TCTCTTTCTCCTCGGCCATAG 58.689 52.381 2.24 0.00 0.00 2.23
25 26 0.753262 TCTTTCTCCTCGGCCATAGC 59.247 55.000 2.24 0.00 38.76 2.97
37 38 2.214387 GCCATAGCCACTTTTGCATC 57.786 50.000 0.00 0.00 0.00 3.91
38 39 1.202452 GCCATAGCCACTTTTGCATCC 60.202 52.381 0.00 0.00 0.00 3.51
39 40 1.410153 CCATAGCCACTTTTGCATCCC 59.590 52.381 0.00 0.00 0.00 3.85
40 41 2.101783 CATAGCCACTTTTGCATCCCA 58.898 47.619 0.00 0.00 0.00 4.37
41 42 2.300956 TAGCCACTTTTGCATCCCAA 57.699 45.000 0.00 0.00 0.00 4.12
42 43 1.648116 AGCCACTTTTGCATCCCAAT 58.352 45.000 0.00 0.00 32.49 3.16
43 44 1.276989 AGCCACTTTTGCATCCCAATG 59.723 47.619 0.00 0.00 32.49 2.82
70 71 4.888326 CTAGCATAGCCTCCTTCATCTT 57.112 45.455 0.00 0.00 0.00 2.40
71 72 5.226194 CTAGCATAGCCTCCTTCATCTTT 57.774 43.478 0.00 0.00 0.00 2.52
72 73 3.818180 AGCATAGCCTCCTTCATCTTTG 58.182 45.455 0.00 0.00 0.00 2.77
73 74 2.292845 GCATAGCCTCCTTCATCTTTGC 59.707 50.000 0.00 0.00 0.00 3.68
74 75 2.717639 TAGCCTCCTTCATCTTTGCC 57.282 50.000 0.00 0.00 0.00 4.52
75 76 0.700564 AGCCTCCTTCATCTTTGCCA 59.299 50.000 0.00 0.00 0.00 4.92
76 77 1.287146 AGCCTCCTTCATCTTTGCCAT 59.713 47.619 0.00 0.00 0.00 4.40
77 78 1.680207 GCCTCCTTCATCTTTGCCATC 59.320 52.381 0.00 0.00 0.00 3.51
78 79 2.686118 GCCTCCTTCATCTTTGCCATCT 60.686 50.000 0.00 0.00 0.00 2.90
79 80 3.629087 CCTCCTTCATCTTTGCCATCTT 58.371 45.455 0.00 0.00 0.00 2.40
80 81 3.631227 CCTCCTTCATCTTTGCCATCTTC 59.369 47.826 0.00 0.00 0.00 2.87
96 97 0.040425 CTTCAACGCAAAAGGACCCG 60.040 55.000 0.00 0.00 0.00 5.28
97 98 0.464013 TTCAACGCAAAAGGACCCGA 60.464 50.000 0.00 0.00 0.00 5.14
137 138 1.682323 CTAACCCTAACCGCTCTCTCC 59.318 57.143 0.00 0.00 0.00 3.71
147 148 4.507916 CTCTCTCCGGGGGCTCGA 62.508 72.222 0.00 0.00 0.00 4.04
204 205 1.449601 GCGGAAGGAATTGGAGCGA 60.450 57.895 0.00 0.00 0.00 4.93
250 1840 1.079490 AGGCCAGGGCATATAGAGCTA 59.921 52.381 16.94 0.00 44.11 3.32
252 1842 1.902508 GCCAGGGCATATAGAGCTACA 59.097 52.381 5.20 0.00 41.49 2.74
253 1843 2.303022 GCCAGGGCATATAGAGCTACAA 59.697 50.000 5.20 0.00 41.49 2.41
258 1848 3.005472 GGGCATATAGAGCTACAACGACA 59.995 47.826 0.00 0.00 0.00 4.35
267 1857 4.643334 AGAGCTACAACGACACATGGTATA 59.357 41.667 0.00 0.00 0.00 1.47
333 1924 1.040339 GGACAGCGAGGTCAGAGGAT 61.040 60.000 8.80 0.00 39.59 3.24
377 1978 1.827399 GAGGTGGGAAGTGAAGCCGA 61.827 60.000 0.00 0.00 0.00 5.54
379 1980 2.027625 GTGGGAAGTGAAGCCGACG 61.028 63.158 0.00 0.00 0.00 5.12
423 2024 4.301072 AAGGGGATTCGACAAAATCAGA 57.699 40.909 0.00 0.00 37.38 3.27
478 2080 1.338020 GATGCGGGATCCCACAAATTC 59.662 52.381 30.42 17.15 31.40 2.17
483 2086 3.306710 GCGGGATCCCACAAATTCTTTTT 60.307 43.478 30.42 0.00 35.37 1.94
488 2091 2.630580 TCCCACAAATTCTTTTTCGGGG 59.369 45.455 0.00 0.00 35.62 5.73
515 2118 4.430007 CCGATTTGAAGTATCTGTTCGGA 58.570 43.478 2.00 0.00 40.26 4.55
520 2123 1.747355 GAAGTATCTGTTCGGACCGGA 59.253 52.381 15.25 0.77 0.00 5.14
528 2131 3.147629 CTGTTCGGACCGGAGATATAGT 58.852 50.000 15.25 0.00 0.00 2.12
537 2140 4.805744 ACCGGAGATATAGTATGGATCCC 58.194 47.826 9.46 0.00 0.00 3.85
538 2141 4.232122 ACCGGAGATATAGTATGGATCCCA 59.768 45.833 9.46 0.00 38.19 4.37
539 2142 5.103043 ACCGGAGATATAGTATGGATCCCAT 60.103 44.000 9.46 5.63 46.99 4.00
542 2145 7.509318 CCGGAGATATAGTATGGATCCCATAAA 59.491 40.741 9.90 0.00 46.46 1.40
543 2146 8.924303 CGGAGATATAGTATGGATCCCATAAAA 58.076 37.037 9.90 0.00 46.46 1.52
545 2148 9.751542 GAGATATAGTATGGATCCCATAAAACG 57.248 37.037 9.90 0.00 46.46 3.60
546 2149 8.705594 AGATATAGTATGGATCCCATAAAACGG 58.294 37.037 9.90 0.00 46.46 4.44
547 2150 3.751518 AGTATGGATCCCATAAAACGGC 58.248 45.455 9.90 0.00 46.46 5.68
548 2151 2.746279 ATGGATCCCATAAAACGGCA 57.254 45.000 9.90 0.00 43.19 5.69
549 2152 2.051334 TGGATCCCATAAAACGGCAG 57.949 50.000 9.90 0.00 0.00 4.85
550 2153 1.283613 TGGATCCCATAAAACGGCAGT 59.716 47.619 9.90 0.00 0.00 4.40
551 2154 2.291282 TGGATCCCATAAAACGGCAGTT 60.291 45.455 9.90 0.00 43.50 3.16
552 2155 3.054287 TGGATCCCATAAAACGGCAGTTA 60.054 43.478 9.90 0.00 40.18 2.24
553 2156 4.142038 GGATCCCATAAAACGGCAGTTAT 58.858 43.478 1.70 0.00 40.18 1.89
554 2157 4.583073 GGATCCCATAAAACGGCAGTTATT 59.417 41.667 1.70 2.93 40.18 1.40
555 2158 5.766174 GGATCCCATAAAACGGCAGTTATTA 59.234 40.000 1.70 4.99 40.18 0.98
556 2159 6.433093 GGATCCCATAAAACGGCAGTTATTAT 59.567 38.462 1.70 6.93 40.18 1.28
557 2160 7.608761 GGATCCCATAAAACGGCAGTTATTATA 59.391 37.037 1.70 0.00 40.18 0.98
558 2161 7.972832 TCCCATAAAACGGCAGTTATTATAG 57.027 36.000 1.70 3.66 40.18 1.31
559 2162 6.428771 TCCCATAAAACGGCAGTTATTATAGC 59.571 38.462 1.70 0.00 40.18 2.97
560 2163 6.304126 CCATAAAACGGCAGTTATTATAGCG 58.696 40.000 1.70 0.00 40.18 4.26
561 2164 4.806342 AAAACGGCAGTTATTATAGCGG 57.194 40.909 1.70 0.00 40.18 5.52
562 2165 3.738830 AACGGCAGTTATTATAGCGGA 57.261 42.857 0.00 0.00 39.11 5.54
563 2166 3.022607 ACGGCAGTTATTATAGCGGAC 57.977 47.619 0.00 0.00 0.00 4.79
564 2167 2.363038 ACGGCAGTTATTATAGCGGACA 59.637 45.455 0.00 0.00 0.00 4.02
565 2168 2.987149 CGGCAGTTATTATAGCGGACAG 59.013 50.000 0.00 0.00 0.00 3.51
566 2169 3.326747 GGCAGTTATTATAGCGGACAGG 58.673 50.000 0.00 0.00 0.00 4.00
567 2170 3.006537 GGCAGTTATTATAGCGGACAGGA 59.993 47.826 0.00 0.00 0.00 3.86
568 2171 3.988517 GCAGTTATTATAGCGGACAGGAC 59.011 47.826 0.00 0.00 0.00 3.85
569 2172 4.557205 CAGTTATTATAGCGGACAGGACC 58.443 47.826 0.00 0.00 0.00 4.46
578 2181 4.047059 GACAGGACCGGTTCGCGA 62.047 66.667 9.42 3.71 0.00 5.87
579 2182 3.966026 GACAGGACCGGTTCGCGAG 62.966 68.421 9.42 1.93 0.00 5.03
580 2183 3.744719 CAGGACCGGTTCGCGAGA 61.745 66.667 9.42 0.00 39.20 4.04
581 2184 2.754658 AGGACCGGTTCGCGAGAT 60.755 61.111 9.42 0.00 41.60 2.75
582 2185 2.278661 GGACCGGTTCGCGAGATC 60.279 66.667 9.42 4.13 41.60 2.75
583 2186 2.772691 GGACCGGTTCGCGAGATCT 61.773 63.158 9.42 0.00 41.60 2.75
584 2187 1.586564 GACCGGTTCGCGAGATCTG 60.587 63.158 9.42 9.21 41.60 2.90
585 2188 2.956964 CCGGTTCGCGAGATCTGC 60.957 66.667 9.59 3.35 41.60 4.26
586 2189 2.103143 CGGTTCGCGAGATCTGCT 59.897 61.111 9.59 0.00 41.60 4.24
587 2190 1.355563 CGGTTCGCGAGATCTGCTA 59.644 57.895 9.59 0.00 41.60 3.49
588 2191 0.658829 CGGTTCGCGAGATCTGCTAG 60.659 60.000 9.59 0.00 41.60 3.42
589 2192 0.663688 GGTTCGCGAGATCTGCTAGA 59.336 55.000 9.59 0.00 41.60 2.43
590 2193 1.598430 GGTTCGCGAGATCTGCTAGAC 60.598 57.143 9.59 0.00 41.60 2.59
591 2194 1.064208 GTTCGCGAGATCTGCTAGACA 59.936 52.381 9.59 0.00 41.60 3.41
592 2195 1.598882 TCGCGAGATCTGCTAGACAT 58.401 50.000 3.71 0.00 33.31 3.06
593 2196 1.265365 TCGCGAGATCTGCTAGACATG 59.735 52.381 3.71 0.00 33.31 3.21
594 2197 1.001924 CGCGAGATCTGCTAGACATGT 60.002 52.381 0.00 0.00 0.00 3.21
595 2198 2.542618 CGCGAGATCTGCTAGACATGTT 60.543 50.000 0.00 0.00 0.00 2.71
607 2210 5.482526 TGCTAGACATGTTCTAACCCTAACA 59.517 40.000 0.00 0.00 36.32 2.41
608 2211 6.014070 TGCTAGACATGTTCTAACCCTAACAA 60.014 38.462 0.00 0.00 38.95 2.83
617 2220 5.272405 TCTAACCCTAACAACTCTCTCCT 57.728 43.478 0.00 0.00 0.00 3.69
627 2230 2.441164 TCTCTCCTGAGGCTCGGC 60.441 66.667 18.14 0.00 40.58 5.54
633 2236 4.069232 CTGAGGCTCGGCGTGGAA 62.069 66.667 10.99 0.00 0.00 3.53
658 2267 5.064558 TGGAGAAGGCAACACGTTTTATTA 58.935 37.500 0.00 0.00 41.41 0.98
659 2268 5.049267 TGGAGAAGGCAACACGTTTTATTAC 60.049 40.000 0.00 0.00 41.41 1.89
662 2271 6.977213 AGAAGGCAACACGTTTTATTACATT 58.023 32.000 0.00 0.00 41.41 2.71
663 2272 8.101654 AGAAGGCAACACGTTTTATTACATTA 57.898 30.769 0.00 0.00 41.41 1.90
664 2273 8.736244 AGAAGGCAACACGTTTTATTACATTAT 58.264 29.630 0.00 0.00 41.41 1.28
665 2274 9.991388 GAAGGCAACACGTTTTATTACATTATA 57.009 29.630 0.00 0.00 41.41 0.98
699 2326 1.873591 AGAGAGCACGTTTCGCAAAAT 59.126 42.857 0.00 0.00 0.00 1.82
793 2422 3.406200 CCAGCCTGACCTGGGGAG 61.406 72.222 0.00 0.00 46.93 4.30
794 2423 3.406200 CAGCCTGACCTGGGGAGG 61.406 72.222 8.54 8.54 0.00 4.30
852 2492 2.288273 CCCTAAACCCAGATCGATCGAC 60.288 54.545 22.06 14.23 0.00 4.20
969 4636 0.175760 CTCCTTCTCCCGCGAAATCA 59.824 55.000 8.23 0.00 0.00 2.57
980 4647 2.813179 CGAAATCAAGCTCCCGCCG 61.813 63.158 0.00 0.00 36.60 6.46
1209 4882 1.374758 CGCTGCCGACTTTTCTCCT 60.375 57.895 0.00 0.00 36.29 3.69
1637 5421 2.415491 CGATAGTGTTTGACTCGGCTCA 60.415 50.000 0.00 0.00 35.96 4.26
2005 5789 2.628178 CTCTACCATAGTGCGATTGGGA 59.372 50.000 0.00 0.00 34.72 4.37
2407 6858 1.212751 GCACAAATCCTTGGTCCGC 59.787 57.895 0.00 0.00 36.82 5.54
2448 6899 2.216046 CCTCATGAATGTGGTCCATCG 58.784 52.381 0.00 0.00 36.84 3.84
2494 6945 0.645868 GCATCTTGTAACGTCCTCGC 59.354 55.000 0.00 0.00 41.18 5.03
2496 6947 2.479049 GCATCTTGTAACGTCCTCGCTA 60.479 50.000 0.00 0.00 41.18 4.26
2573 7024 3.119849 GCAATGTCGCAAGTGAGGTAATT 60.120 43.478 0.00 0.00 39.48 1.40
2601 7054 6.826231 CACACAACCCATGTAATACAATAGGA 59.174 38.462 11.93 0.00 41.46 2.94
2602 7055 7.338196 CACACAACCCATGTAATACAATAGGAA 59.662 37.037 11.93 0.00 41.46 3.36
2778 7239 5.460419 GCTCCATTACTGATCAACTAGAACG 59.540 44.000 0.00 0.00 0.00 3.95
2791 7253 6.539324 TCAACTAGAACGAAAACAACACAAG 58.461 36.000 0.00 0.00 0.00 3.16
2865 7329 3.772853 AACGGCACCTGCAAGCTGA 62.773 57.895 17.99 0.00 44.36 4.26
2919 7385 0.537188 AATCTCGCACCCTCACGATT 59.463 50.000 0.00 0.00 37.72 3.34
2934 7400 6.984474 CCCTCACGATTAAGACTATTTAAGCA 59.016 38.462 0.00 0.00 30.42 3.91
3175 7664 6.312672 GCGGTTGATGCATTTTAATTAAGGTT 59.687 34.615 0.00 0.00 0.00 3.50
3342 7833 1.409064 CCCGAGACATTCCGATCAGAA 59.591 52.381 0.00 0.00 0.00 3.02
3488 7984 7.676947 TGAGACTAGCTACAAGTAAAACCAAT 58.323 34.615 0.00 0.00 0.00 3.16
3546 8044 4.586421 TCAGTTCAGATCAACACTCAGAGT 59.414 41.667 0.00 0.00 0.00 3.24
3557 8055 1.140589 CTCAGAGTAGCACTGGCCG 59.859 63.158 0.00 0.00 42.56 6.13
3558 8056 2.185350 CAGAGTAGCACTGGCCGG 59.815 66.667 11.02 11.02 42.56 6.13
3559 8057 3.077556 AGAGTAGCACTGGCCGGG 61.078 66.667 18.00 4.25 42.56 5.73
3560 8058 4.162690 GAGTAGCACTGGCCGGGG 62.163 72.222 18.00 14.50 42.56 5.73
3697 8208 1.143073 GGTGAACTGTCAAGGGGTTCT 59.857 52.381 0.00 0.00 39.73 3.01
3786 8298 1.596954 CGGCAAGAGTGGAACAAAACG 60.597 52.381 0.00 0.00 44.16 3.60
4090 8621 2.883386 GCATAGGCATAGCAAAAGAGCT 59.117 45.455 0.00 0.00 43.58 4.09
4126 8659 7.678218 GCAAGCAAAGATAGAAGTGATTTCGAT 60.678 37.037 0.00 0.00 40.86 3.59
4153 8687 2.442236 TCATCTTGCCTGAAATCCCC 57.558 50.000 0.00 0.00 0.00 4.81
4397 8954 9.507280 CTACAAATTAAGTGAAGCACAATATGG 57.493 33.333 0.00 0.00 36.74 2.74
4548 9112 3.694566 GGTTAAATGAGGTCGGAAGCAAT 59.305 43.478 0.00 0.00 0.00 3.56
4553 9117 1.347707 TGAGGTCGGAAGCAATGAACT 59.652 47.619 0.00 0.00 30.90 3.01
4678 9247 4.668138 AACTAGGCATTTTCTACCCCAA 57.332 40.909 0.00 0.00 0.00 4.12
4681 9250 4.956075 ACTAGGCATTTTCTACCCCAAATG 59.044 41.667 0.00 0.00 41.47 2.32
5175 9757 2.110213 GTGGTGGAGCGGTCAACA 59.890 61.111 22.86 11.91 0.00 3.33
5207 9815 0.832135 TTGCTCCTGGTCGTCTCCTT 60.832 55.000 0.00 0.00 0.00 3.36
5234 9842 2.207924 ACTCGAACCAGGAAGCGGT 61.208 57.895 0.00 0.00 38.85 5.68
5479 10087 2.913060 GAGGGGCGCGAGGTAGAT 60.913 66.667 12.10 0.00 0.00 1.98
5700 10311 3.849563 ACAAGTTAGTTGGCTGTGGTA 57.150 42.857 4.72 0.00 40.90 3.25
5949 10571 2.889170 TGTTTTGGGATGATCCGGAA 57.111 45.000 9.01 0.00 37.43 4.30
6126 10783 0.736325 CGGCGACTGTTTTCGGAGAT 60.736 55.000 0.00 0.00 39.50 2.75
6140 10797 2.094390 TCGGAGATCGAAAACGTCCAAT 60.094 45.455 0.00 0.00 45.86 3.16
6188 10847 2.684192 ATCCGTTGGGGCGTCAAACA 62.684 55.000 5.78 0.00 34.94 2.83
6269 10928 2.837591 TCAACTCTCATCCCATTCCGAA 59.162 45.455 0.00 0.00 0.00 4.30
6380 11040 2.032987 GGAGAACCCGGGCGAAAA 59.967 61.111 24.08 0.00 0.00 2.29
6381 11041 1.378119 GGAGAACCCGGGCGAAAAT 60.378 57.895 24.08 0.00 0.00 1.82
6388 11048 1.814394 ACCCGGGCGAAAATAAGTTTC 59.186 47.619 24.08 0.00 42.01 2.78
6389 11049 1.813786 CCCGGGCGAAAATAAGTTTCA 59.186 47.619 8.08 0.00 45.15 2.69
6437 11097 5.881443 TGATGACATGATAAGATGCAACACA 59.119 36.000 0.00 0.00 0.00 3.72
6438 11098 6.544564 TGATGACATGATAAGATGCAACACAT 59.455 34.615 0.00 0.00 43.54 3.21
6441 11101 8.278729 TGACATGATAAGATGCAACACATAAA 57.721 30.769 0.00 0.00 39.84 1.40
6442 11102 8.738106 TGACATGATAAGATGCAACACATAAAA 58.262 29.630 0.00 0.00 39.84 1.52
6473 11133 4.123506 TGACAACAACAGCGAATAACTGA 58.876 39.130 0.00 0.00 38.55 3.41
6474 11134 4.754618 TGACAACAACAGCGAATAACTGAT 59.245 37.500 0.00 0.00 38.55 2.90
6508 11168 2.125793 GGTCTCGGGGCGTTACAC 60.126 66.667 0.00 0.00 0.00 2.90
6509 11169 2.652530 GTCTCGGGGCGTTACACA 59.347 61.111 0.00 0.00 0.00 3.72
6510 11170 1.217244 GTCTCGGGGCGTTACACAT 59.783 57.895 0.00 0.00 0.00 3.21
6511 11171 0.804933 GTCTCGGGGCGTTACACATC 60.805 60.000 0.00 0.00 0.00 3.06
6512 11172 0.968901 TCTCGGGGCGTTACACATCT 60.969 55.000 0.00 0.00 0.00 2.90
6541 11201 2.728690 TCGCACGTGTTAACCACTAT 57.271 45.000 18.38 0.00 42.20 2.12
6798 11466 4.503123 CCAGTCAGATCAGGTAACACACAA 60.503 45.833 0.00 0.00 41.41 3.33
6879 11558 9.026074 CACTAACAAAACGTAAATCAAAACCAT 57.974 29.630 0.00 0.00 0.00 3.55
7240 12010 4.935352 ACCTACACATTGTTTGCACATT 57.065 36.364 0.00 0.00 31.06 2.71
7315 12086 6.634889 AATTAAACCCATGCCTAAACCAAT 57.365 33.333 0.00 0.00 0.00 3.16
7371 12142 2.503895 ACCTGAGAGCATTTTCCCTG 57.496 50.000 0.00 0.00 0.00 4.45
7377 12148 2.611292 GAGAGCATTTTCCCTGTCGATG 59.389 50.000 0.00 0.00 0.00 3.84
7556 12355 7.060383 TCCTTGAATGATTTTGGCTTAACAA 57.940 32.000 0.00 0.00 0.00 2.83
7561 12360 7.448420 TGAATGATTTTGGCTTAACAATTGGA 58.552 30.769 10.83 0.00 0.00 3.53
7647 12459 0.467290 TTTTGGGTCTGTGTGGGCTC 60.467 55.000 0.00 0.00 0.00 4.70
7650 12462 2.262915 GGTCTGTGTGGGCTCGAG 59.737 66.667 8.45 8.45 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.247736 GCCGAGGAGAAAGAGAAGCA 59.752 55.000 0.00 0.00 0.00 3.91
1 2 0.461163 GGCCGAGGAGAAAGAGAAGC 60.461 60.000 0.00 0.00 0.00 3.86
4 5 2.311463 CTATGGCCGAGGAGAAAGAGA 58.689 52.381 0.00 0.00 0.00 3.10
7 8 3.297391 GCTATGGCCGAGGAGAAAG 57.703 57.895 0.00 0.00 0.00 2.62
18 19 1.202452 GGATGCAAAAGTGGCTATGGC 60.202 52.381 0.00 0.00 37.82 4.40
19 20 1.410153 GGGATGCAAAAGTGGCTATGG 59.590 52.381 0.00 0.00 0.00 2.74
20 21 2.101783 TGGGATGCAAAAGTGGCTATG 58.898 47.619 0.00 0.00 0.00 2.23
21 22 2.530460 TGGGATGCAAAAGTGGCTAT 57.470 45.000 0.00 0.00 0.00 2.97
22 23 2.300956 TTGGGATGCAAAAGTGGCTA 57.699 45.000 0.00 0.00 0.00 3.93
23 24 1.276989 CATTGGGATGCAAAAGTGGCT 59.723 47.619 0.00 0.00 0.00 4.75
24 25 1.729284 CATTGGGATGCAAAAGTGGC 58.271 50.000 0.00 0.00 0.00 5.01
49 50 4.888326 AAGATGAAGGAGGCTATGCTAG 57.112 45.455 0.00 0.00 0.00 3.42
50 51 4.744867 GCAAAGATGAAGGAGGCTATGCTA 60.745 45.833 0.00 0.00 0.00 3.49
51 52 3.818180 CAAAGATGAAGGAGGCTATGCT 58.182 45.455 0.00 0.00 0.00 3.79
52 53 2.292845 GCAAAGATGAAGGAGGCTATGC 59.707 50.000 0.00 0.00 0.00 3.14
53 54 2.883386 GGCAAAGATGAAGGAGGCTATG 59.117 50.000 0.00 0.00 0.00 2.23
54 55 2.511218 TGGCAAAGATGAAGGAGGCTAT 59.489 45.455 0.00 0.00 0.00 2.97
55 56 1.915489 TGGCAAAGATGAAGGAGGCTA 59.085 47.619 0.00 0.00 0.00 3.93
56 57 0.700564 TGGCAAAGATGAAGGAGGCT 59.299 50.000 0.00 0.00 0.00 4.58
57 58 1.680207 GATGGCAAAGATGAAGGAGGC 59.320 52.381 0.00 0.00 0.00 4.70
58 59 3.294038 AGATGGCAAAGATGAAGGAGG 57.706 47.619 0.00 0.00 0.00 4.30
59 60 4.267536 TGAAGATGGCAAAGATGAAGGAG 58.732 43.478 0.00 0.00 0.00 3.69
60 61 4.305539 TGAAGATGGCAAAGATGAAGGA 57.694 40.909 0.00 0.00 0.00 3.36
61 62 4.673580 CGTTGAAGATGGCAAAGATGAAGG 60.674 45.833 0.00 0.00 0.00 3.46
62 63 4.409570 CGTTGAAGATGGCAAAGATGAAG 58.590 43.478 0.00 0.00 0.00 3.02
63 64 3.366273 GCGTTGAAGATGGCAAAGATGAA 60.366 43.478 0.00 0.00 0.00 2.57
64 65 2.162208 GCGTTGAAGATGGCAAAGATGA 59.838 45.455 0.00 0.00 0.00 2.92
65 66 2.095110 TGCGTTGAAGATGGCAAAGATG 60.095 45.455 0.00 0.00 31.50 2.90
66 67 2.161855 TGCGTTGAAGATGGCAAAGAT 58.838 42.857 0.00 0.00 31.50 2.40
67 68 1.603456 TGCGTTGAAGATGGCAAAGA 58.397 45.000 0.00 0.00 31.50 2.52
68 69 2.420628 TTGCGTTGAAGATGGCAAAG 57.579 45.000 0.00 0.00 41.90 2.77
70 71 2.545532 CCTTTTGCGTTGAAGATGGCAA 60.546 45.455 0.00 0.00 43.02 4.52
71 72 1.000385 CCTTTTGCGTTGAAGATGGCA 60.000 47.619 0.00 0.00 0.00 4.92
72 73 1.269448 TCCTTTTGCGTTGAAGATGGC 59.731 47.619 0.00 0.00 0.00 4.40
73 74 2.351738 GGTCCTTTTGCGTTGAAGATGG 60.352 50.000 0.00 0.00 0.00 3.51
74 75 2.351738 GGGTCCTTTTGCGTTGAAGATG 60.352 50.000 0.00 0.00 0.00 2.90
75 76 1.886542 GGGTCCTTTTGCGTTGAAGAT 59.113 47.619 0.00 0.00 0.00 2.40
76 77 1.314730 GGGTCCTTTTGCGTTGAAGA 58.685 50.000 0.00 0.00 0.00 2.87
77 78 0.040425 CGGGTCCTTTTGCGTTGAAG 60.040 55.000 0.00 0.00 0.00 3.02
78 79 0.464013 TCGGGTCCTTTTGCGTTGAA 60.464 50.000 0.00 0.00 0.00 2.69
79 80 0.250553 ATCGGGTCCTTTTGCGTTGA 60.251 50.000 0.00 0.00 0.00 3.18
80 81 0.168128 GATCGGGTCCTTTTGCGTTG 59.832 55.000 0.00 0.00 0.00 4.10
96 97 0.744771 AAGGCGAAAAGGAGGCGATC 60.745 55.000 0.00 0.00 38.03 3.69
97 98 1.026718 CAAGGCGAAAAGGAGGCGAT 61.027 55.000 0.00 0.00 38.03 4.58
137 138 0.748005 AAATCAACATCGAGCCCCCG 60.748 55.000 0.00 0.00 0.00 5.73
140 141 1.672881 CTCCAAATCAACATCGAGCCC 59.327 52.381 0.00 0.00 0.00 5.19
147 148 5.324409 TGCCTTCTAACTCCAAATCAACAT 58.676 37.500 0.00 0.00 0.00 2.71
204 205 2.357517 CGCAACTCCTTCCGCTGT 60.358 61.111 0.00 0.00 0.00 4.40
240 1830 5.302059 ACCATGTGTCGTTGTAGCTCTATAT 59.698 40.000 0.00 0.00 0.00 0.86
250 1840 2.669434 GCGTTATACCATGTGTCGTTGT 59.331 45.455 0.00 0.00 0.00 3.32
252 1842 2.669434 GTGCGTTATACCATGTGTCGTT 59.331 45.455 0.00 0.00 0.00 3.85
253 1843 2.264813 GTGCGTTATACCATGTGTCGT 58.735 47.619 0.00 0.00 0.00 4.34
258 1848 1.134220 CCCTGGTGCGTTATACCATGT 60.134 52.381 0.00 0.00 46.41 3.21
287 1878 2.566010 GCGCCAAAATTCAGCCGA 59.434 55.556 0.00 0.00 0.00 5.54
318 1909 0.105760 ATCCATCCTCTGACCTCGCT 60.106 55.000 0.00 0.00 0.00 4.93
361 1962 2.027625 CGTCGGCTTCACTTCCCAC 61.028 63.158 0.00 0.00 0.00 4.61
362 1963 2.342279 CGTCGGCTTCACTTCCCA 59.658 61.111 0.00 0.00 0.00 4.37
363 1964 2.434359 CCGTCGGCTTCACTTCCC 60.434 66.667 0.00 0.00 0.00 3.97
364 1965 1.005394 TTCCGTCGGCTTCACTTCC 60.005 57.895 6.34 0.00 0.00 3.46
365 1966 0.319641 ACTTCCGTCGGCTTCACTTC 60.320 55.000 6.34 0.00 0.00 3.01
366 1967 0.600255 CACTTCCGTCGGCTTCACTT 60.600 55.000 6.34 0.00 0.00 3.16
367 1968 1.006102 CACTTCCGTCGGCTTCACT 60.006 57.895 6.34 0.00 0.00 3.41
377 1978 3.608662 TCGCGAACCCACTTCCGT 61.609 61.111 6.20 0.00 0.00 4.69
379 1980 1.595929 TTGTCGCGAACCCACTTCC 60.596 57.895 12.06 0.00 0.00 3.46
392 1993 1.084289 GAATCCCCTTTCGGTTGTCG 58.916 55.000 0.00 0.00 40.90 4.35
410 2011 4.201812 GCGGATTTCATCTGATTTTGTCGA 60.202 41.667 0.00 0.00 37.90 4.20
413 2014 4.218200 TGTGCGGATTTCATCTGATTTTGT 59.782 37.500 0.00 0.00 37.90 2.83
421 2022 4.758674 CCTTCATATGTGCGGATTTCATCT 59.241 41.667 1.90 0.00 0.00 2.90
423 2024 4.717877 TCCTTCATATGTGCGGATTTCAT 58.282 39.130 1.90 0.00 0.00 2.57
473 2075 0.037697 GCCGCCCCGAAAAAGAATTT 60.038 50.000 0.00 0.00 42.41 1.82
488 2091 0.586802 GATACTTCAAATCGGGCCGC 59.413 55.000 23.83 0.00 0.00 6.53
515 2118 4.232122 TGGGATCCATACTATATCTCCGGT 59.768 45.833 15.23 0.00 0.00 5.28
520 2123 8.705594 CCGTTTTATGGGATCCATACTATATCT 58.294 37.037 15.23 0.00 44.98 1.98
528 2131 3.137544 ACTGCCGTTTTATGGGATCCATA 59.862 43.478 15.23 6.92 43.19 2.74
537 2140 6.146510 TCCGCTATAATAACTGCCGTTTTATG 59.853 38.462 0.00 1.91 34.59 1.90
538 2141 6.146673 GTCCGCTATAATAACTGCCGTTTTAT 59.853 38.462 0.00 6.33 34.59 1.40
539 2142 5.463061 GTCCGCTATAATAACTGCCGTTTTA 59.537 40.000 0.00 0.00 34.59 1.52
542 2145 3.181473 TGTCCGCTATAATAACTGCCGTT 60.181 43.478 0.00 0.00 37.15 4.44
543 2146 2.363038 TGTCCGCTATAATAACTGCCGT 59.637 45.455 0.00 0.00 0.00 5.68
545 2148 3.006537 TCCTGTCCGCTATAATAACTGCC 59.993 47.826 0.00 0.00 0.00 4.85
546 2149 3.988517 GTCCTGTCCGCTATAATAACTGC 59.011 47.826 0.00 0.00 0.00 4.40
547 2150 4.557205 GGTCCTGTCCGCTATAATAACTG 58.443 47.826 0.00 0.00 0.00 3.16
548 2151 3.255149 CGGTCCTGTCCGCTATAATAACT 59.745 47.826 0.00 0.00 43.96 2.24
549 2152 3.572584 CGGTCCTGTCCGCTATAATAAC 58.427 50.000 0.00 0.00 43.96 1.89
550 2153 3.928727 CGGTCCTGTCCGCTATAATAA 57.071 47.619 0.00 0.00 43.96 1.40
561 2164 3.966026 CTCGCGAACCGGTCCTGTC 62.966 68.421 8.04 0.00 37.59 3.51
562 2165 4.052229 CTCGCGAACCGGTCCTGT 62.052 66.667 8.04 0.00 37.59 4.00
563 2166 2.938539 GATCTCGCGAACCGGTCCTG 62.939 65.000 8.04 1.14 37.59 3.86
564 2167 2.754658 ATCTCGCGAACCGGTCCT 60.755 61.111 8.04 0.00 37.59 3.85
565 2168 2.278661 GATCTCGCGAACCGGTCC 60.279 66.667 8.04 0.00 37.59 4.46
566 2169 1.586564 CAGATCTCGCGAACCGGTC 60.587 63.158 8.04 4.39 37.59 4.79
567 2170 2.490217 CAGATCTCGCGAACCGGT 59.510 61.111 11.33 0.00 37.59 5.28
568 2171 2.060004 TAGCAGATCTCGCGAACCGG 62.060 60.000 11.33 0.00 37.59 5.28
569 2172 0.658829 CTAGCAGATCTCGCGAACCG 60.659 60.000 11.33 0.00 38.61 4.44
570 2173 0.663688 TCTAGCAGATCTCGCGAACC 59.336 55.000 11.33 1.73 0.00 3.62
571 2174 1.064208 TGTCTAGCAGATCTCGCGAAC 59.936 52.381 11.33 4.81 0.00 3.95
572 2175 1.379527 TGTCTAGCAGATCTCGCGAA 58.620 50.000 11.33 1.32 0.00 4.70
573 2176 1.265365 CATGTCTAGCAGATCTCGCGA 59.735 52.381 9.26 9.26 0.00 5.87
574 2177 1.001924 ACATGTCTAGCAGATCTCGCG 60.002 52.381 0.00 0.00 0.00 5.87
575 2178 2.791383 ACATGTCTAGCAGATCTCGC 57.209 50.000 8.56 8.56 0.00 5.03
576 2179 4.566545 AGAACATGTCTAGCAGATCTCG 57.433 45.455 0.00 0.00 33.56 4.04
577 2180 6.212955 GGTTAGAACATGTCTAGCAGATCTC 58.787 44.000 0.00 0.00 40.80 2.75
578 2181 5.069781 GGGTTAGAACATGTCTAGCAGATCT 59.930 44.000 0.00 0.00 40.80 2.75
579 2182 5.069781 AGGGTTAGAACATGTCTAGCAGATC 59.930 44.000 0.00 0.00 40.80 2.75
580 2183 4.965532 AGGGTTAGAACATGTCTAGCAGAT 59.034 41.667 0.00 0.00 40.80 2.90
581 2184 4.353777 AGGGTTAGAACATGTCTAGCAGA 58.646 43.478 0.00 0.00 40.80 4.26
582 2185 4.744795 AGGGTTAGAACATGTCTAGCAG 57.255 45.455 0.00 0.00 40.80 4.24
583 2186 5.482526 TGTTAGGGTTAGAACATGTCTAGCA 59.517 40.000 0.00 0.00 40.80 3.49
584 2187 5.974108 TGTTAGGGTTAGAACATGTCTAGC 58.026 41.667 0.00 4.88 40.04 3.42
585 2188 7.612677 AGTTGTTAGGGTTAGAACATGTCTAG 58.387 38.462 0.00 0.00 40.04 2.43
586 2189 7.453752 AGAGTTGTTAGGGTTAGAACATGTCTA 59.546 37.037 0.00 0.00 37.84 2.59
587 2190 6.270231 AGAGTTGTTAGGGTTAGAACATGTCT 59.730 38.462 0.00 0.69 40.71 3.41
588 2191 6.465084 AGAGTTGTTAGGGTTAGAACATGTC 58.535 40.000 0.00 0.00 35.57 3.06
589 2192 6.270231 AGAGAGTTGTTAGGGTTAGAACATGT 59.730 38.462 0.00 0.00 35.57 3.21
590 2193 6.702329 AGAGAGTTGTTAGGGTTAGAACATG 58.298 40.000 0.00 0.00 35.57 3.21
591 2194 6.070710 GGAGAGAGTTGTTAGGGTTAGAACAT 60.071 42.308 0.00 0.00 35.57 2.71
592 2195 5.245526 GGAGAGAGTTGTTAGGGTTAGAACA 59.754 44.000 0.00 0.00 33.81 3.18
593 2196 5.481122 AGGAGAGAGTTGTTAGGGTTAGAAC 59.519 44.000 0.00 0.00 0.00 3.01
594 2197 5.480772 CAGGAGAGAGTTGTTAGGGTTAGAA 59.519 44.000 0.00 0.00 0.00 2.10
595 2198 5.017490 CAGGAGAGAGTTGTTAGGGTTAGA 58.983 45.833 0.00 0.00 0.00 2.10
607 2210 0.682855 CCGAGCCTCAGGAGAGAGTT 60.683 60.000 0.00 0.00 44.98 3.01
608 2211 1.077068 CCGAGCCTCAGGAGAGAGT 60.077 63.158 0.00 0.00 44.98 3.24
617 2220 2.954684 AATTCCACGCCGAGCCTCA 61.955 57.895 0.00 0.00 0.00 3.86
627 2230 1.200020 GTTGCCTTCTCCAATTCCACG 59.800 52.381 0.00 0.00 0.00 4.94
633 2236 1.981256 AACGTGTTGCCTTCTCCAAT 58.019 45.000 0.00 0.00 0.00 3.16
672 2281 3.546218 GCGAAACGTGCTCTCTTTTCTTT 60.546 43.478 0.00 0.00 0.00 2.52
675 2284 1.260561 TGCGAAACGTGCTCTCTTTTC 59.739 47.619 0.00 0.00 0.00 2.29
684 2302 1.052287 CTGGATTTTGCGAAACGTGC 58.948 50.000 0.00 0.00 0.00 5.34
699 2326 1.600511 TTACGATCAGGCACGCTGGA 61.601 55.000 0.00 0.00 0.00 3.86
814 2454 3.417224 GTTTTCGACCCGACCCGC 61.417 66.667 0.00 0.00 34.89 6.13
1047 4714 0.678366 GGAGAGCTCCGACTGAGACA 60.678 60.000 10.93 0.00 44.42 3.41
1637 5421 3.518998 CGTCGCCTCCGTCCAGAT 61.519 66.667 0.00 0.00 35.54 2.90
2488 6939 2.630158 GAGATATAGCCGTAGCGAGGA 58.370 52.381 0.00 0.00 46.67 3.71
2494 6945 2.161808 CACGTGGGAGATATAGCCGTAG 59.838 54.545 7.95 0.00 0.00 3.51
2496 6947 0.959553 CACGTGGGAGATATAGCCGT 59.040 55.000 7.95 0.00 0.00 5.68
2573 7024 6.961360 TTGTATTACATGGGTTGTGTGAAA 57.039 33.333 0.00 0.00 39.48 2.69
2760 7220 8.545420 GTTGTTTTCGTTCTAGTTGATCAGTAA 58.455 33.333 0.00 0.00 0.00 2.24
2778 7239 4.712122 TCTTGTCCCTTGTGTTGTTTTC 57.288 40.909 0.00 0.00 0.00 2.29
2791 7253 2.102252 AGCTCGATGAAGATCTTGTCCC 59.898 50.000 14.00 0.00 0.00 4.46
2865 7329 4.922206 TGGCTCACAGATACTTCCAAAAT 58.078 39.130 0.00 0.00 0.00 1.82
2934 7400 8.925338 CACCTCTTACCTTTACCTTACTCATAT 58.075 37.037 0.00 0.00 0.00 1.78
2939 7406 5.658474 TCCACCTCTTACCTTTACCTTACT 58.342 41.667 0.00 0.00 0.00 2.24
3189 7679 7.614583 TGGGAATTTGTTAATATCCGGTTGTAA 59.385 33.333 0.00 0.00 0.00 2.41
3200 7690 5.523588 TGGGCAGATGGGAATTTGTTAATA 58.476 37.500 0.00 0.00 0.00 0.98
3354 7845 3.441572 CCTGCCGAAATGTCTTGAAGAAT 59.558 43.478 0.00 0.00 0.00 2.40
3533 8031 2.297315 CCAGTGCTACTCTGAGTGTTGA 59.703 50.000 20.19 0.00 35.20 3.18
3697 8208 2.695127 ACGCGGTTGGGTAATAATGA 57.305 45.000 12.47 0.00 39.84 2.57
3763 8275 2.032681 GTTCCACTCTTGCCGCCT 59.967 61.111 0.00 0.00 0.00 5.52
3855 8368 6.672593 ACATGTTTACCTGTTGGGATATCAT 58.327 36.000 4.83 0.00 38.76 2.45
3998 8523 3.178865 CCTCTAACCCACCTTGTCCTAA 58.821 50.000 0.00 0.00 0.00 2.69
4090 8621 6.406370 TCTATCTTTGCTTGCTTAGTTGCTA 58.594 36.000 0.00 0.00 0.00 3.49
4099 8631 6.402983 CGAAATCACTTCTATCTTTGCTTGCT 60.403 38.462 0.00 0.00 31.20 3.91
4126 8659 4.776435 TTCAGGCAAGATGATCATACCA 57.224 40.909 8.54 0.00 0.00 3.25
4153 8687 2.037251 TGGACTCGTTCTTCTTCCTTGG 59.963 50.000 0.00 0.00 0.00 3.61
4397 8954 1.063469 CCGTCAATATGCAACCCGTTC 59.937 52.381 0.00 0.00 0.00 3.95
4548 9112 5.187687 GGGATTTACCGGAATTGTAGTTCA 58.812 41.667 9.46 0.00 40.11 3.18
4553 9117 4.799715 ATGGGGATTTACCGGAATTGTA 57.200 40.909 9.46 0.00 40.11 2.41
4627 9195 9.585099 CATGGTGTACTTATTTTGCATGTTTAT 57.415 29.630 0.00 0.00 0.00 1.40
4678 9247 9.651913 CCAAACCTAACAAACTTTATATGCATT 57.348 29.630 3.54 0.00 0.00 3.56
4681 9250 7.488150 GCTCCAAACCTAACAAACTTTATATGC 59.512 37.037 0.00 0.00 0.00 3.14
4886 9458 1.251251 AGCCCTTCAAGTTCATGCAC 58.749 50.000 0.00 0.00 0.00 4.57
5101 9683 3.028098 TACCGGCCTCCCTCCTCT 61.028 66.667 0.00 0.00 0.00 3.69
5479 10087 3.461773 GCCGGAGCAGAGCACCTA 61.462 66.667 5.05 0.00 37.16 3.08
5663 10274 3.884774 TTGCAGCTCCCCACCGTT 61.885 61.111 0.00 0.00 0.00 4.44
5700 10311 1.304282 GCACCACCAGATCCACCAT 59.696 57.895 0.00 0.00 0.00 3.55
5949 10571 1.066918 GACAGTCGTCACCGTTGGT 59.933 57.895 0.00 0.00 42.13 3.67
5981 10603 2.604174 CGCGCCCGAAAAGTTGTCT 61.604 57.895 0.00 0.00 36.29 3.41
6202 10861 0.586802 GACCGCCTGTCAAGTTTCAC 59.413 55.000 0.00 0.00 43.85 3.18
6269 10928 5.986501 TTATAAGTGGCCGGAAAATGTTT 57.013 34.783 5.05 0.00 0.00 2.83
6374 11034 9.305110 CATCATGTTTTTGAAACTTATTTTCGC 57.695 29.630 5.30 0.00 45.96 4.70
6379 11039 9.491675 TGCATCATCATGTTTTTGAAACTTATT 57.508 25.926 5.30 0.00 31.86 1.40
6380 11040 9.491675 TTGCATCATCATGTTTTTGAAACTTAT 57.508 25.926 5.30 0.00 31.86 1.73
6381 11041 8.883954 TTGCATCATCATGTTTTTGAAACTTA 57.116 26.923 5.30 0.00 31.86 2.24
6388 11048 5.106908 TGTGCATTGCATCATCATGTTTTTG 60.107 36.000 15.49 0.00 41.91 2.44
6389 11049 4.998033 TGTGCATTGCATCATCATGTTTTT 59.002 33.333 15.49 0.00 41.91 1.94
6441 11101 4.503734 CGCTGTTGTTGTCATGTCATTTTT 59.496 37.500 0.00 0.00 0.00 1.94
6442 11102 4.043750 CGCTGTTGTTGTCATGTCATTTT 58.956 39.130 0.00 0.00 0.00 1.82
6473 11133 1.078214 CGATGTGCCAGGTGTCCAT 60.078 57.895 0.00 0.00 0.00 3.41
6474 11134 2.347114 CGATGTGCCAGGTGTCCA 59.653 61.111 0.00 0.00 0.00 4.02
6508 11168 3.554692 GCGAACGCGGTCCAGATG 61.555 66.667 20.28 4.93 38.16 2.90
6509 11169 4.063967 TGCGAACGCGGTCCAGAT 62.064 61.111 20.28 0.00 45.51 2.90
6953 11634 9.353999 CAACCTAAAGCCTATTTTTATTCACAC 57.646 33.333 0.00 0.00 0.00 3.82
6982 11665 1.401552 CACATATTGTGGTGCTTCCCG 59.598 52.381 0.00 0.00 44.27 5.14
7164 11934 7.869016 TGTCTCGAAGAACTTTACAGTAATG 57.131 36.000 4.94 4.94 34.09 1.90
7315 12086 6.785963 TCCCTCTTCTAGTTCTGGAAAAGTTA 59.214 38.462 0.82 0.00 0.00 2.24
7371 12142 4.483476 AAACAAACTGCTAACCATCGAC 57.517 40.909 0.00 0.00 0.00 4.20
7377 12148 3.349488 AGCGAAAACAAACTGCTAACC 57.651 42.857 0.00 0.00 33.37 2.85
7556 12355 8.641498 ACAAATTCAACTGATCTAAGTCCAAT 57.359 30.769 0.00 0.00 0.00 3.16
7561 12360 9.236006 AGCATTACAAATTCAACTGATCTAAGT 57.764 29.630 0.00 0.00 0.00 2.24
7647 12459 6.093404 TGAAGCTTTCACTGATTAGTACTCG 58.907 40.000 0.00 0.00 34.74 4.18
7681 12493 7.492344 ACCTCAATCAACAAACAAGATTTGAAC 59.508 33.333 6.40 0.00 31.96 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.