Multiple sequence alignment - TraesCS6A01G166300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G166300 | chr6A | 100.000 | 9801 | 0 | 0 | 1 | 9801 | 169210474 | 169200674 | 0.000000e+00 | 18100.0 |
1 | TraesCS6A01G166300 | chr6A | 93.258 | 178 | 10 | 2 | 9195 | 9371 | 370675616 | 370675440 | 2.720000e-65 | 261.0 |
2 | TraesCS6A01G166300 | chr6A | 87.562 | 201 | 17 | 8 | 9175 | 9372 | 519804264 | 519804459 | 9.900000e-55 | 226.0 |
3 | TraesCS6A01G166300 | chr6D | 93.711 | 3832 | 164 | 26 | 1 | 3801 | 130183790 | 130180005 | 0.000000e+00 | 5670.0 |
4 | TraesCS6A01G166300 | chr6D | 93.929 | 2520 | 80 | 22 | 6730 | 9202 | 130179590 | 130177097 | 0.000000e+00 | 3738.0 |
5 | TraesCS6A01G166300 | chr6D | 87.848 | 395 | 22 | 9 | 9370 | 9763 | 130177098 | 130176729 | 3.250000e-119 | 440.0 |
6 | TraesCS6A01G166300 | chr6D | 97.753 | 178 | 2 | 2 | 6555 | 6732 | 130179935 | 130179760 | 1.240000e-78 | 305.0 |
7 | TraesCS6A01G166300 | chr6D | 93.258 | 178 | 10 | 2 | 9195 | 9371 | 260024498 | 260024674 | 2.720000e-65 | 261.0 |
8 | TraesCS6A01G166300 | chr6D | 87.727 | 220 | 27 | 0 | 1126 | 1345 | 130477393 | 130477174 | 3.510000e-64 | 257.0 |
9 | TraesCS6A01G166300 | chr6D | 92.169 | 166 | 13 | 0 | 926 | 1091 | 130477554 | 130477389 | 1.650000e-57 | 235.0 |
10 | TraesCS6A01G166300 | chr6D | 97.222 | 36 | 1 | 0 | 6754 | 6789 | 130179623 | 130179588 | 2.960000e-05 | 62.1 |
11 | TraesCS6A01G166300 | chr6B | 94.416 | 3152 | 133 | 24 | 670 | 3801 | 228702647 | 228699519 | 0.000000e+00 | 4806.0 |
12 | TraesCS6A01G166300 | chr6B | 93.605 | 2408 | 79 | 37 | 6838 | 9202 | 228699136 | 228696761 | 0.000000e+00 | 3524.0 |
13 | TraesCS6A01G166300 | chr6B | 86.566 | 923 | 108 | 11 | 3800 | 4711 | 609365270 | 609366187 | 0.000000e+00 | 1003.0 |
14 | TraesCS6A01G166300 | chr6B | 88.584 | 657 | 65 | 4 | 14 | 668 | 228703572 | 228702924 | 0.000000e+00 | 789.0 |
15 | TraesCS6A01G166300 | chr6B | 77.011 | 1392 | 304 | 15 | 5094 | 6477 | 279571997 | 279573380 | 0.000000e+00 | 784.0 |
16 | TraesCS6A01G166300 | chr6B | 84.323 | 657 | 69 | 7 | 956 | 1612 | 229752103 | 229752725 | 6.510000e-171 | 612.0 |
17 | TraesCS6A01G166300 | chr6B | 98.322 | 298 | 3 | 2 | 6556 | 6852 | 228699448 | 228699152 | 1.130000e-143 | 521.0 |
18 | TraesCS6A01G166300 | chr6B | 88.579 | 394 | 23 | 14 | 9370 | 9763 | 228696762 | 228696391 | 8.970000e-125 | 459.0 |
19 | TraesCS6A01G166300 | chr6B | 91.209 | 182 | 10 | 6 | 9192 | 9372 | 189483577 | 189483401 | 9.830000e-60 | 243.0 |
20 | TraesCS6A01G166300 | chr6B | 86.517 | 178 | 20 | 2 | 914 | 1091 | 228704592 | 228704419 | 1.000000e-44 | 193.0 |
21 | TraesCS6A01G166300 | chr6B | 94.845 | 97 | 5 | 0 | 7069 | 7165 | 366432036 | 366431940 | 1.700000e-32 | 152.0 |
22 | TraesCS6A01G166300 | chr6B | 93.478 | 46 | 3 | 0 | 9748 | 9793 | 116426881 | 116426926 | 1.770000e-07 | 69.4 |
23 | TraesCS6A01G166300 | chr6B | 87.931 | 58 | 5 | 2 | 9745 | 9800 | 123239111 | 123239168 | 6.350000e-07 | 67.6 |
24 | TraesCS6A01G166300 | chr5D | 83.827 | 1317 | 188 | 19 | 3800 | 5096 | 382868163 | 382866852 | 0.000000e+00 | 1229.0 |
25 | TraesCS6A01G166300 | chr5D | 77.713 | 1382 | 297 | 11 | 5102 | 6477 | 547280378 | 547281754 | 0.000000e+00 | 835.0 |
26 | TraesCS6A01G166300 | chr5D | 94.706 | 170 | 9 | 0 | 9207 | 9376 | 6083526 | 6083357 | 2.100000e-66 | 265.0 |
27 | TraesCS6A01G166300 | chr5D | 95.745 | 94 | 4 | 0 | 7072 | 7165 | 504792923 | 504793016 | 1.700000e-32 | 152.0 |
28 | TraesCS6A01G166300 | chr5D | 90.000 | 110 | 11 | 0 | 7079 | 7188 | 267842677 | 267842786 | 1.030000e-29 | 143.0 |
29 | TraesCS6A01G166300 | chr5A | 85.285 | 965 | 114 | 16 | 5094 | 6050 | 340661206 | 340660262 | 0.000000e+00 | 970.0 |
30 | TraesCS6A01G166300 | chr5A | 78.353 | 1372 | 281 | 16 | 5094 | 6457 | 158240311 | 158241674 | 0.000000e+00 | 874.0 |
31 | TraesCS6A01G166300 | chr5A | 87.127 | 738 | 76 | 10 | 3826 | 4560 | 340804629 | 340803908 | 0.000000e+00 | 819.0 |
32 | TraesCS6A01G166300 | chr5A | 76.864 | 1422 | 311 | 18 | 5094 | 6505 | 455474173 | 455475586 | 0.000000e+00 | 787.0 |
33 | TraesCS6A01G166300 | chr5A | 77.006 | 1396 | 295 | 20 | 5094 | 6477 | 338252428 | 338253809 | 0.000000e+00 | 776.0 |
34 | TraesCS6A01G166300 | chr5A | 85.124 | 484 | 71 | 1 | 4612 | 5095 | 340661966 | 340661484 | 2.460000e-135 | 494.0 |
35 | TraesCS6A01G166300 | chr5A | 96.364 | 165 | 6 | 0 | 9204 | 9368 | 184230679 | 184230843 | 1.250000e-68 | 272.0 |
36 | TraesCS6A01G166300 | chr5A | 90.090 | 111 | 9 | 2 | 7063 | 7171 | 630026378 | 630026268 | 1.030000e-29 | 143.0 |
37 | TraesCS6A01G166300 | chr5A | 100.000 | 40 | 0 | 0 | 9762 | 9801 | 433496600 | 433496561 | 3.800000e-09 | 75.0 |
38 | TraesCS6A01G166300 | chr5A | 93.478 | 46 | 3 | 0 | 9755 | 9800 | 438842354 | 438842309 | 1.770000e-07 | 69.4 |
39 | TraesCS6A01G166300 | chr3D | 78.838 | 1394 | 276 | 16 | 5094 | 6477 | 239596640 | 239598024 | 0.000000e+00 | 922.0 |
40 | TraesCS6A01G166300 | chr3D | 74.863 | 1094 | 249 | 23 | 4001 | 5079 | 157776527 | 157777609 | 3.200000e-129 | 473.0 |
41 | TraesCS6A01G166300 | chr7B | 87.042 | 818 | 97 | 6 | 3805 | 4617 | 609756034 | 609755221 | 0.000000e+00 | 915.0 |
42 | TraesCS6A01G166300 | chr7B | 86.052 | 803 | 95 | 7 | 3804 | 4603 | 609787298 | 609786510 | 0.000000e+00 | 846.0 |
43 | TraesCS6A01G166300 | chr7B | 90.419 | 167 | 16 | 0 | 9474 | 9640 | 139607445 | 139607611 | 4.610000e-53 | 220.0 |
44 | TraesCS6A01G166300 | chr7B | 88.722 | 133 | 14 | 1 | 2389 | 2521 | 382607536 | 382607667 | 2.830000e-35 | 161.0 |
45 | TraesCS6A01G166300 | chr7B | 96.774 | 93 | 3 | 0 | 7079 | 7171 | 66196706 | 66196614 | 1.320000e-33 | 156.0 |
46 | TraesCS6A01G166300 | chr7B | 95.652 | 46 | 2 | 0 | 9756 | 9801 | 735283679 | 735283724 | 3.800000e-09 | 75.0 |
47 | TraesCS6A01G166300 | chr7B | 90.196 | 51 | 4 | 1 | 9750 | 9800 | 685048220 | 685048171 | 2.280000e-06 | 65.8 |
48 | TraesCS6A01G166300 | chr7D | 80.186 | 1181 | 195 | 31 | 3929 | 5081 | 77031645 | 77032814 | 0.000000e+00 | 848.0 |
49 | TraesCS6A01G166300 | chr7D | 76.614 | 1317 | 251 | 40 | 3800 | 5096 | 264071374 | 264070095 | 0.000000e+00 | 673.0 |
50 | TraesCS6A01G166300 | chr7D | 76.039 | 1227 | 251 | 38 | 3887 | 5086 | 180075745 | 180076955 | 1.820000e-166 | 597.0 |
51 | TraesCS6A01G166300 | chr7D | 91.803 | 183 | 14 | 1 | 9198 | 9379 | 522504685 | 522504867 | 4.540000e-63 | 254.0 |
52 | TraesCS6A01G166300 | chr7D | 87.383 | 214 | 22 | 3 | 9170 | 9378 | 50710449 | 50710236 | 3.540000e-59 | 241.0 |
53 | TraesCS6A01G166300 | chr7D | 89.831 | 59 | 6 | 0 | 2463 | 2521 | 408368434 | 408368492 | 1.060000e-09 | 76.8 |
54 | TraesCS6A01G166300 | chr5B | 77.175 | 1402 | 289 | 27 | 5094 | 6479 | 77727857 | 77729243 | 0.000000e+00 | 787.0 |
55 | TraesCS6A01G166300 | chr5B | 79.598 | 1044 | 195 | 16 | 4048 | 5079 | 184808173 | 184809210 | 0.000000e+00 | 732.0 |
56 | TraesCS6A01G166300 | chr5B | 93.478 | 46 | 3 | 0 | 9755 | 9800 | 326925284 | 326925239 | 1.770000e-07 | 69.4 |
57 | TraesCS6A01G166300 | chr5B | 95.349 | 43 | 1 | 1 | 733 | 774 | 653703209 | 653703251 | 6.350000e-07 | 67.6 |
58 | TraesCS6A01G166300 | chr3A | 76.741 | 1393 | 307 | 14 | 5094 | 6477 | 393842458 | 393841074 | 0.000000e+00 | 761.0 |
59 | TraesCS6A01G166300 | chr3A | 78.431 | 918 | 182 | 12 | 5098 | 6009 | 550507904 | 550506997 | 1.420000e-162 | 584.0 |
60 | TraesCS6A01G166300 | chr3A | 76.596 | 987 | 193 | 27 | 3799 | 4769 | 667791988 | 667791024 | 8.780000e-140 | 508.0 |
61 | TraesCS6A01G166300 | chr3A | 90.761 | 184 | 14 | 3 | 9189 | 9372 | 710866680 | 710866860 | 9.830000e-60 | 243.0 |
62 | TraesCS6A01G166300 | chr4D | 85.975 | 713 | 95 | 5 | 3900 | 4609 | 127571186 | 127571896 | 0.000000e+00 | 758.0 |
63 | TraesCS6A01G166300 | chr4D | 81.560 | 564 | 86 | 13 | 3801 | 4354 | 448618134 | 448618689 | 5.400000e-122 | 449.0 |
64 | TraesCS6A01G166300 | chr4A | 84.290 | 732 | 99 | 9 | 3881 | 4609 | 440866115 | 440865397 | 0.000000e+00 | 701.0 |
65 | TraesCS6A01G166300 | chr4A | 77.044 | 1211 | 268 | 10 | 5272 | 6477 | 162822082 | 162820877 | 0.000000e+00 | 688.0 |
66 | TraesCS6A01G166300 | chr7A | 76.471 | 1326 | 255 | 43 | 3800 | 5096 | 287548711 | 287547414 | 0.000000e+00 | 667.0 |
67 | TraesCS6A01G166300 | chr7A | 76.379 | 834 | 170 | 23 | 4271 | 5086 | 184331254 | 184332078 | 3.270000e-114 | 424.0 |
68 | TraesCS6A01G166300 | chr7A | 85.455 | 110 | 7 | 4 | 9647 | 9755 | 20160482 | 20160381 | 1.350000e-18 | 106.0 |
69 | TraesCS6A01G166300 | chr4B | 76.621 | 1326 | 239 | 50 | 3800 | 5074 | 95677595 | 95678900 | 0.000000e+00 | 665.0 |
70 | TraesCS6A01G166300 | chr4B | 85.345 | 116 | 8 | 5 | 9641 | 9755 | 209284468 | 209284361 | 2.890000e-20 | 111.0 |
71 | TraesCS6A01G166300 | chr1B | 85.811 | 296 | 27 | 10 | 3799 | 4086 | 628922383 | 628922671 | 5.750000e-77 | 300.0 |
72 | TraesCS6A01G166300 | chr1B | 85.424 | 295 | 29 | 11 | 3799 | 4086 | 628998704 | 628998991 | 2.680000e-75 | 294.0 |
73 | TraesCS6A01G166300 | chr1B | 91.860 | 172 | 12 | 2 | 9201 | 9371 | 482699048 | 482698878 | 1.270000e-58 | 239.0 |
74 | TraesCS6A01G166300 | chr1B | 88.718 | 195 | 16 | 6 | 9184 | 9376 | 662536878 | 662537068 | 5.920000e-57 | 233.0 |
75 | TraesCS6A01G166300 | chr1B | 90.090 | 111 | 9 | 2 | 7063 | 7171 | 148289498 | 148289608 | 1.030000e-29 | 143.0 |
76 | TraesCS6A01G166300 | chr1A | 96.988 | 166 | 5 | 0 | 9206 | 9371 | 74014405 | 74014240 | 7.500000e-71 | 279.0 |
77 | TraesCS6A01G166300 | chr1A | 92.941 | 85 | 5 | 1 | 9481 | 9565 | 47266864 | 47266781 | 1.340000e-23 | 122.0 |
78 | TraesCS6A01G166300 | chr2D | 92.737 | 179 | 12 | 1 | 9193 | 9371 | 275232039 | 275232216 | 3.510000e-64 | 257.0 |
79 | TraesCS6A01G166300 | chr2D | 88.060 | 134 | 15 | 1 | 2388 | 2521 | 342099632 | 342099764 | 3.660000e-34 | 158.0 |
80 | TraesCS6A01G166300 | chr2D | 86.620 | 142 | 18 | 1 | 2386 | 2527 | 147232821 | 147232681 | 1.320000e-33 | 156.0 |
81 | TraesCS6A01G166300 | chr2D | 90.654 | 107 | 10 | 0 | 7066 | 7172 | 511922702 | 511922596 | 1.030000e-29 | 143.0 |
82 | TraesCS6A01G166300 | chr2D | 92.857 | 42 | 3 | 0 | 819 | 860 | 565939368 | 565939409 | 2.960000e-05 | 62.1 |
83 | TraesCS6A01G166300 | chr2B | 92.308 | 182 | 12 | 2 | 9193 | 9372 | 25495970 | 25496151 | 3.510000e-64 | 257.0 |
84 | TraesCS6A01G166300 | chr2B | 88.889 | 135 | 12 | 3 | 2388 | 2521 | 407236175 | 407236307 | 7.880000e-36 | 163.0 |
85 | TraesCS6A01G166300 | chr3B | 90.323 | 186 | 15 | 3 | 9189 | 9371 | 571752504 | 571752689 | 3.540000e-59 | 241.0 |
86 | TraesCS6A01G166300 | chr3B | 90.270 | 185 | 16 | 2 | 9187 | 9371 | 778706936 | 778707118 | 3.540000e-59 | 241.0 |
87 | TraesCS6A01G166300 | chr3B | 87.313 | 134 | 15 | 2 | 2389 | 2521 | 332944509 | 332944641 | 1.700000e-32 | 152.0 |
88 | TraesCS6A01G166300 | chr3B | 85.345 | 116 | 8 | 5 | 9641 | 9755 | 483376723 | 483376616 | 2.890000e-20 | 111.0 |
89 | TraesCS6A01G166300 | chr3B | 84.615 | 117 | 7 | 8 | 9641 | 9755 | 669815489 | 669815596 | 1.350000e-18 | 106.0 |
90 | TraesCS6A01G166300 | chr3B | 82.051 | 117 | 8 | 9 | 9641 | 9755 | 669840236 | 669840341 | 4.880000e-13 | 87.9 |
91 | TraesCS6A01G166300 | chr3B | 93.478 | 46 | 3 | 0 | 9755 | 9800 | 765518240 | 765518285 | 1.770000e-07 | 69.4 |
92 | TraesCS6A01G166300 | chr3B | 86.667 | 60 | 5 | 3 | 9744 | 9801 | 333856380 | 333856322 | 8.220000e-06 | 63.9 |
93 | TraesCS6A01G166300 | chr1D | 90.217 | 184 | 18 | 0 | 9188 | 9371 | 490547423 | 490547240 | 3.540000e-59 | 241.0 |
94 | TraesCS6A01G166300 | chr1D | 88.722 | 133 | 14 | 1 | 2389 | 2521 | 250738443 | 250738574 | 2.830000e-35 | 161.0 |
95 | TraesCS6A01G166300 | chr1D | 81.618 | 136 | 11 | 8 | 2392 | 2527 | 216330023 | 216329902 | 6.260000e-17 | 100.0 |
96 | TraesCS6A01G166300 | chr2A | 87.313 | 134 | 16 | 1 | 2388 | 2521 | 451810375 | 451810507 | 1.700000e-32 | 152.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6A01G166300 | chr6A | 169200674 | 169210474 | 9800 | True | 18100.000000 | 18100 | 100.0000 | 1 | 9801 | 1 | chr6A.!!$R1 | 9800 |
1 | TraesCS6A01G166300 | chr6D | 130176729 | 130183790 | 7061 | True | 2043.020000 | 5670 | 94.0926 | 1 | 9763 | 5 | chr6D.!!$R1 | 9762 |
2 | TraesCS6A01G166300 | chr6B | 228696391 | 228704592 | 8201 | True | 1715.333333 | 4806 | 91.6705 | 14 | 9763 | 6 | chr6B.!!$R3 | 9749 |
3 | TraesCS6A01G166300 | chr6B | 609365270 | 609366187 | 917 | False | 1003.000000 | 1003 | 86.5660 | 3800 | 4711 | 1 | chr6B.!!$F5 | 911 |
4 | TraesCS6A01G166300 | chr6B | 279571997 | 279573380 | 1383 | False | 784.000000 | 784 | 77.0110 | 5094 | 6477 | 1 | chr6B.!!$F4 | 1383 |
5 | TraesCS6A01G166300 | chr6B | 229752103 | 229752725 | 622 | False | 612.000000 | 612 | 84.3230 | 956 | 1612 | 1 | chr6B.!!$F3 | 656 |
6 | TraesCS6A01G166300 | chr5D | 382866852 | 382868163 | 1311 | True | 1229.000000 | 1229 | 83.8270 | 3800 | 5096 | 1 | chr5D.!!$R2 | 1296 |
7 | TraesCS6A01G166300 | chr5D | 547280378 | 547281754 | 1376 | False | 835.000000 | 835 | 77.7130 | 5102 | 6477 | 1 | chr5D.!!$F3 | 1375 |
8 | TraesCS6A01G166300 | chr5A | 158240311 | 158241674 | 1363 | False | 874.000000 | 874 | 78.3530 | 5094 | 6457 | 1 | chr5A.!!$F1 | 1363 |
9 | TraesCS6A01G166300 | chr5A | 340803908 | 340804629 | 721 | True | 819.000000 | 819 | 87.1270 | 3826 | 4560 | 1 | chr5A.!!$R1 | 734 |
10 | TraesCS6A01G166300 | chr5A | 455474173 | 455475586 | 1413 | False | 787.000000 | 787 | 76.8640 | 5094 | 6505 | 1 | chr5A.!!$F4 | 1411 |
11 | TraesCS6A01G166300 | chr5A | 338252428 | 338253809 | 1381 | False | 776.000000 | 776 | 77.0060 | 5094 | 6477 | 1 | chr5A.!!$F3 | 1383 |
12 | TraesCS6A01G166300 | chr5A | 340660262 | 340661966 | 1704 | True | 732.000000 | 970 | 85.2045 | 4612 | 6050 | 2 | chr5A.!!$R5 | 1438 |
13 | TraesCS6A01G166300 | chr3D | 239596640 | 239598024 | 1384 | False | 922.000000 | 922 | 78.8380 | 5094 | 6477 | 1 | chr3D.!!$F2 | 1383 |
14 | TraesCS6A01G166300 | chr3D | 157776527 | 157777609 | 1082 | False | 473.000000 | 473 | 74.8630 | 4001 | 5079 | 1 | chr3D.!!$F1 | 1078 |
15 | TraesCS6A01G166300 | chr7B | 609755221 | 609756034 | 813 | True | 915.000000 | 915 | 87.0420 | 3805 | 4617 | 1 | chr7B.!!$R2 | 812 |
16 | TraesCS6A01G166300 | chr7B | 609786510 | 609787298 | 788 | True | 846.000000 | 846 | 86.0520 | 3804 | 4603 | 1 | chr7B.!!$R3 | 799 |
17 | TraesCS6A01G166300 | chr7D | 77031645 | 77032814 | 1169 | False | 848.000000 | 848 | 80.1860 | 3929 | 5081 | 1 | chr7D.!!$F1 | 1152 |
18 | TraesCS6A01G166300 | chr7D | 264070095 | 264071374 | 1279 | True | 673.000000 | 673 | 76.6140 | 3800 | 5096 | 1 | chr7D.!!$R2 | 1296 |
19 | TraesCS6A01G166300 | chr7D | 180075745 | 180076955 | 1210 | False | 597.000000 | 597 | 76.0390 | 3887 | 5086 | 1 | chr7D.!!$F2 | 1199 |
20 | TraesCS6A01G166300 | chr5B | 77727857 | 77729243 | 1386 | False | 787.000000 | 787 | 77.1750 | 5094 | 6479 | 1 | chr5B.!!$F1 | 1385 |
21 | TraesCS6A01G166300 | chr5B | 184808173 | 184809210 | 1037 | False | 732.000000 | 732 | 79.5980 | 4048 | 5079 | 1 | chr5B.!!$F2 | 1031 |
22 | TraesCS6A01G166300 | chr3A | 393841074 | 393842458 | 1384 | True | 761.000000 | 761 | 76.7410 | 5094 | 6477 | 1 | chr3A.!!$R1 | 1383 |
23 | TraesCS6A01G166300 | chr3A | 550506997 | 550507904 | 907 | True | 584.000000 | 584 | 78.4310 | 5098 | 6009 | 1 | chr3A.!!$R2 | 911 |
24 | TraesCS6A01G166300 | chr3A | 667791024 | 667791988 | 964 | True | 508.000000 | 508 | 76.5960 | 3799 | 4769 | 1 | chr3A.!!$R3 | 970 |
25 | TraesCS6A01G166300 | chr4D | 127571186 | 127571896 | 710 | False | 758.000000 | 758 | 85.9750 | 3900 | 4609 | 1 | chr4D.!!$F1 | 709 |
26 | TraesCS6A01G166300 | chr4D | 448618134 | 448618689 | 555 | False | 449.000000 | 449 | 81.5600 | 3801 | 4354 | 1 | chr4D.!!$F2 | 553 |
27 | TraesCS6A01G166300 | chr4A | 440865397 | 440866115 | 718 | True | 701.000000 | 701 | 84.2900 | 3881 | 4609 | 1 | chr4A.!!$R2 | 728 |
28 | TraesCS6A01G166300 | chr4A | 162820877 | 162822082 | 1205 | True | 688.000000 | 688 | 77.0440 | 5272 | 6477 | 1 | chr4A.!!$R1 | 1205 |
29 | TraesCS6A01G166300 | chr7A | 287547414 | 287548711 | 1297 | True | 667.000000 | 667 | 76.4710 | 3800 | 5096 | 1 | chr7A.!!$R2 | 1296 |
30 | TraesCS6A01G166300 | chr7A | 184331254 | 184332078 | 824 | False | 424.000000 | 424 | 76.3790 | 4271 | 5086 | 1 | chr7A.!!$F1 | 815 |
31 | TraesCS6A01G166300 | chr4B | 95677595 | 95678900 | 1305 | False | 665.000000 | 665 | 76.6210 | 3800 | 5074 | 1 | chr4B.!!$F1 | 1274 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
653 | 1663 | 0.095245 | CACAACTAGCGGTGAATGCG | 59.905 | 55.000 | 8.31 | 0.00 | 37.18 | 4.73 | F |
2183 | 3491 | 0.739462 | CGTTAGCAACCGGAGATGCA | 60.739 | 55.000 | 25.37 | 13.60 | 41.41 | 3.96 | F |
3506 | 4825 | 1.135915 | CAGAGACTCAGGATGGAACCG | 59.864 | 57.143 | 5.02 | 0.00 | 36.16 | 4.44 | F |
4578 | 5977 | 0.748005 | GTTGCGATGGCCTGGTACAT | 60.748 | 55.000 | 3.32 | 5.84 | 38.85 | 2.29 | F |
5018 | 6426 | 0.106519 | CCCTTCCCCATTCGCAATCT | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 | F |
5555 | 7245 | 0.321034 | GACCCTGGTAACCCAACGAC | 60.321 | 60.000 | 0.00 | 0.00 | 41.27 | 4.34 | F |
6166 | 7860 | 0.104725 | AGGGGAGGCTGAGAATAGGG | 60.105 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 | F |
6417 | 8112 | 0.106819 | GTAGCCACTCCTCCGAGGTA | 60.107 | 60.000 | 14.36 | 0.79 | 40.77 | 3.08 | F |
6967 | 8884 | 0.323360 | TTGCAGCCCATAAGACACCC | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 | F |
8560 | 10522 | 0.601311 | GCTTTCTGTCGCACAGGTCT | 60.601 | 55.000 | 13.87 | 0.00 | 45.94 | 3.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2422 | 3731 | 1.481871 | TCCCTTATCGTCACCTGACC | 58.518 | 55.000 | 0.00 | 0.00 | 41.86 | 4.02 | R |
3968 | 5326 | 0.179124 | TGTGCCGCCACTTGTTTTTC | 60.179 | 50.000 | 0.00 | 0.00 | 42.54 | 2.29 | R |
4999 | 6407 | 0.106519 | AGATTGCGAATGGGGAAGGG | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 | R |
5615 | 7305 | 0.111253 | AAGCTGGACTTCCACAAGGG | 59.889 | 55.000 | 0.00 | 0.00 | 42.01 | 3.95 | R |
6015 | 7709 | 0.321564 | TCAAGGGCATGAACCTGACG | 60.322 | 55.000 | 9.82 | 3.37 | 38.63 | 4.35 | R |
6489 | 8184 | 0.539986 | TGATCTACCTTGGCCGGAAC | 59.460 | 55.000 | 5.05 | 0.00 | 0.00 | 3.62 | R |
8046 | 10000 | 2.621668 | GGCAAGCCTCCCTTAGAAACAT | 60.622 | 50.000 | 3.29 | 0.00 | 31.00 | 2.71 | R |
8285 | 10247 | 4.401925 | CCTCACCAAGTTCTTTCTCCATT | 58.598 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 | R |
8734 | 10698 | 0.684535 | TGAGACCATGTCCGCTTTCA | 59.315 | 50.000 | 0.00 | 0.00 | 32.18 | 2.69 | R |
9763 | 11729 | 0.102481 | ACGCACGGGCATTCTACTAG | 59.898 | 55.000 | 11.77 | 0.00 | 41.24 | 2.57 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
77 | 1085 | 0.734889 | GTGGAGGCATTCATTGGTCG | 59.265 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
81 | 1089 | 3.118075 | TGGAGGCATTCATTGGTCGATTA | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 1.75 |
102 | 1110 | 2.038557 | ACACAATGTCCAGGTGTACCTC | 59.961 | 50.000 | 0.00 | 0.00 | 46.65 | 3.85 |
113 | 1121 | 3.131577 | CAGGTGTACCTCGGCATTAGTTA | 59.868 | 47.826 | 0.00 | 0.00 | 46.65 | 2.24 |
137 | 1145 | 3.054139 | TGAGGAGCTGGCACAAAAGATAT | 60.054 | 43.478 | 0.00 | 0.00 | 38.70 | 1.63 |
149 | 1157 | 5.239525 | GCACAAAAGATATCATCCACTACCC | 59.760 | 44.000 | 5.32 | 0.00 | 0.00 | 3.69 |
206 | 1214 | 1.315257 | AACATTGCCGCATGACCTCC | 61.315 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
211 | 1219 | 1.220749 | GCCGCATGACCTCCTTGTA | 59.779 | 57.895 | 0.00 | 0.00 | 0.00 | 2.41 |
223 | 1231 | 6.184789 | TGACCTCCTTGTAAAACTTTCTGTT | 58.815 | 36.000 | 0.00 | 0.00 | 41.29 | 3.16 |
227 | 1235 | 7.832685 | ACCTCCTTGTAAAACTTTCTGTTACTT | 59.167 | 33.333 | 0.00 | 0.00 | 38.03 | 2.24 |
324 | 1333 | 9.107177 | GGCTTCATCAATCATTATATCGAAGAT | 57.893 | 33.333 | 0.00 | 0.00 | 45.12 | 2.40 |
349 | 1358 | 2.507471 | GACATGATCAAGGAAGGAGGGT | 59.493 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
438 | 1448 | 3.199946 | GGGGTTCAGTAAGATCCATGTCA | 59.800 | 47.826 | 0.00 | 0.00 | 37.77 | 3.58 |
508 | 1518 | 6.070251 | TGCAGAGACAACAGAGGGAATTATTA | 60.070 | 38.462 | 0.00 | 0.00 | 0.00 | 0.98 |
509 | 1519 | 6.995091 | GCAGAGACAACAGAGGGAATTATTAT | 59.005 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
535 | 1545 | 0.611200 | TCGGGATTGGTGATTGACGT | 59.389 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
547 | 1557 | 4.393062 | GGTGATTGACGTTTCACATGATCT | 59.607 | 41.667 | 21.24 | 0.00 | 43.20 | 2.75 |
553 | 1563 | 3.067106 | ACGTTTCACATGATCTGACCAC | 58.933 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
555 | 1565 | 3.067106 | GTTTCACATGATCTGACCACGT | 58.933 | 45.455 | 0.00 | 0.00 | 0.00 | 4.49 |
571 | 1581 | 2.267426 | CACGTTTGAGGTGATCGCATA | 58.733 | 47.619 | 8.82 | 0.00 | 36.17 | 3.14 |
626 | 1636 | 6.928492 | TGCATCTACAAAATGTCGCTATATCA | 59.072 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
638 | 1648 | 5.299279 | TGTCGCTATATCATCTGACTCACAA | 59.701 | 40.000 | 0.00 | 0.00 | 0.00 | 3.33 |
653 | 1663 | 0.095245 | CACAACTAGCGGTGAATGCG | 59.905 | 55.000 | 8.31 | 0.00 | 37.18 | 4.73 |
654 | 1664 | 1.019278 | ACAACTAGCGGTGAATGCGG | 61.019 | 55.000 | 0.00 | 0.00 | 37.44 | 5.69 |
660 | 1670 | 2.186903 | CGGTGAATGCGGTAGCCT | 59.813 | 61.111 | 0.00 | 0.00 | 44.33 | 4.58 |
661 | 1671 | 1.449601 | CGGTGAATGCGGTAGCCTT | 60.450 | 57.895 | 0.00 | 0.00 | 44.33 | 4.35 |
683 | 1967 | 4.657814 | AAGGGTTGAAGGAAAGCTATGA | 57.342 | 40.909 | 0.00 | 0.00 | 0.00 | 2.15 |
713 | 1997 | 7.852971 | TTATCGACGAAATTAAATCCCAAGT | 57.147 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
784 | 2070 | 5.725110 | ATGAAGCACATAAGTTAGCGAAG | 57.275 | 39.130 | 0.00 | 0.00 | 37.46 | 3.79 |
785 | 2071 | 4.566004 | TGAAGCACATAAGTTAGCGAAGT | 58.434 | 39.130 | 0.00 | 0.00 | 0.00 | 3.01 |
786 | 2072 | 5.716094 | TGAAGCACATAAGTTAGCGAAGTA | 58.284 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
787 | 2073 | 6.338146 | TGAAGCACATAAGTTAGCGAAGTAT | 58.662 | 36.000 | 0.00 | 0.00 | 0.00 | 2.12 |
788 | 2074 | 6.816640 | TGAAGCACATAAGTTAGCGAAGTATT | 59.183 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
789 | 2075 | 6.830114 | AGCACATAAGTTAGCGAAGTATTC | 57.170 | 37.500 | 0.00 | 0.00 | 43.09 | 1.75 |
806 | 2092 | 7.772332 | AAGTATTCGGTATGCTTTTAGACTG | 57.228 | 36.000 | 0.00 | 0.00 | 35.93 | 3.51 |
814 | 2100 | 5.471456 | GGTATGCTTTTAGACTGGATCATGG | 59.529 | 44.000 | 0.00 | 0.00 | 0.00 | 3.66 |
816 | 2102 | 3.523157 | TGCTTTTAGACTGGATCATGGGA | 59.477 | 43.478 | 0.00 | 0.00 | 0.00 | 4.37 |
817 | 2103 | 4.166725 | TGCTTTTAGACTGGATCATGGGAT | 59.833 | 41.667 | 0.00 | 0.00 | 36.13 | 3.85 |
861 | 2148 | 4.017591 | TCATGACCCAACTTGTATCCCATT | 60.018 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
883 | 2170 | 7.329226 | CCATTTTGTGTGGAGTTTGATGAATAC | 59.671 | 37.037 | 0.00 | 0.00 | 39.12 | 1.89 |
989 | 2284 | 2.526873 | AGAGCAACCCACCTCCGT | 60.527 | 61.111 | 0.00 | 0.00 | 0.00 | 4.69 |
1416 | 2711 | 3.435671 | AGTGCAAGAACATAGGTAAACGC | 59.564 | 43.478 | 0.00 | 0.00 | 0.00 | 4.84 |
1489 | 2786 | 7.123355 | TGAGGGCCATTTTATCCAAAATTAG | 57.877 | 36.000 | 6.18 | 0.00 | 41.41 | 1.73 |
1679 | 2987 | 7.548097 | TCACTATACTGATTCAGTCAAGGAAC | 58.452 | 38.462 | 22.16 | 0.00 | 41.21 | 3.62 |
1875 | 3183 | 6.705863 | ATATTCCCTTTCTTTCATCTGTGC | 57.294 | 37.500 | 0.00 | 0.00 | 0.00 | 4.57 |
1912 | 3220 | 6.849588 | AACATTGAAGTGGCATTCTTTTTC | 57.150 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
1944 | 3252 | 2.171659 | TGCAACACTCCTTGTCTTACCA | 59.828 | 45.455 | 0.00 | 0.00 | 37.51 | 3.25 |
1987 | 3295 | 5.649782 | AATGCACCAATTTAGGACTTCAG | 57.350 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
2183 | 3491 | 0.739462 | CGTTAGCAACCGGAGATGCA | 60.739 | 55.000 | 25.37 | 13.60 | 41.41 | 3.96 |
2303 | 3611 | 7.725844 | ACTGGTATTTCTTTCCTTCAATGTCTT | 59.274 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
2456 | 3765 | 8.019656 | ACGATAAGGGATAATATAGGCGAATT | 57.980 | 34.615 | 0.00 | 0.00 | 0.00 | 2.17 |
2521 | 3830 | 1.407979 | ACCCACCGAGTAGCGATTAAG | 59.592 | 52.381 | 0.00 | 0.00 | 44.57 | 1.85 |
2527 | 3836 | 1.202371 | CGAGTAGCGATTAAGTGGCCA | 60.202 | 52.381 | 0.00 | 0.00 | 44.57 | 5.36 |
2608 | 3917 | 7.148239 | CCCTAACACATCTTACTTTCATGAACC | 60.148 | 40.741 | 7.89 | 0.00 | 0.00 | 3.62 |
2985 | 4301 | 9.733556 | TTGGATTTAGATGCAGTTTTAGAAGTA | 57.266 | 29.630 | 0.00 | 0.00 | 34.92 | 2.24 |
3009 | 4325 | 9.712305 | GTATTTGCTGATCTAGAAGGCTAATAA | 57.288 | 33.333 | 20.74 | 10.71 | 34.50 | 1.40 |
3137 | 4453 | 8.350722 | GGCTATGGTAGTTTTAAAAGAATAGGC | 58.649 | 37.037 | 16.88 | 16.88 | 34.76 | 3.93 |
3158 | 4474 | 2.046285 | CCGCCCCAGTTCCATTGAC | 61.046 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
3222 | 4538 | 3.506844 | GGGGGAATAACAAAAGCGTTACA | 59.493 | 43.478 | 0.00 | 0.00 | 34.31 | 2.41 |
3223 | 4539 | 4.022155 | GGGGGAATAACAAAAGCGTTACAA | 60.022 | 41.667 | 0.00 | 0.00 | 34.31 | 2.41 |
3224 | 4540 | 5.158494 | GGGGAATAACAAAAGCGTTACAAG | 58.842 | 41.667 | 0.00 | 0.00 | 34.31 | 3.16 |
3225 | 4541 | 5.158494 | GGGAATAACAAAAGCGTTACAAGG | 58.842 | 41.667 | 0.00 | 0.00 | 34.31 | 3.61 |
3226 | 4542 | 5.048573 | GGGAATAACAAAAGCGTTACAAGGA | 60.049 | 40.000 | 0.00 | 0.00 | 34.31 | 3.36 |
3227 | 4543 | 6.084277 | GGAATAACAAAAGCGTTACAAGGAG | 58.916 | 40.000 | 0.00 | 0.00 | 34.31 | 3.69 |
3229 | 4545 | 7.361799 | GGAATAACAAAAGCGTTACAAGGAGAT | 60.362 | 37.037 | 0.00 | 0.00 | 34.31 | 2.75 |
3235 | 4551 | 6.481954 | AAAGCGTTACAAGGAGATAACAAG | 57.518 | 37.500 | 0.00 | 0.00 | 31.91 | 3.16 |
3237 | 4553 | 5.790593 | AGCGTTACAAGGAGATAACAAGAA | 58.209 | 37.500 | 0.00 | 0.00 | 31.91 | 2.52 |
3238 | 4554 | 5.638234 | AGCGTTACAAGGAGATAACAAGAAC | 59.362 | 40.000 | 0.00 | 0.00 | 31.91 | 3.01 |
3239 | 4555 | 5.444218 | GCGTTACAAGGAGATAACAAGAACG | 60.444 | 44.000 | 0.00 | 0.00 | 39.03 | 3.95 |
3240 | 4556 | 5.061808 | CGTTACAAGGAGATAACAAGAACGG | 59.938 | 44.000 | 0.00 | 0.00 | 34.03 | 4.44 |
3368 | 4687 | 2.484417 | GGGACGACATGAAGCATCATCT | 60.484 | 50.000 | 0.43 | 0.00 | 44.53 | 2.90 |
3430 | 4749 | 4.254709 | AGCGCACAAGACTGGCCA | 62.255 | 61.111 | 11.47 | 4.71 | 0.00 | 5.36 |
3462 | 4781 | 2.034305 | CCAGGCTTCAGAATTAGCATGC | 59.966 | 50.000 | 10.51 | 10.51 | 45.09 | 4.06 |
3463 | 4782 | 2.950309 | CAGGCTTCAGAATTAGCATGCT | 59.050 | 45.455 | 25.99 | 25.99 | 41.44 | 3.79 |
3506 | 4825 | 1.135915 | CAGAGACTCAGGATGGAACCG | 59.864 | 57.143 | 5.02 | 0.00 | 36.16 | 4.44 |
3577 | 4896 | 5.366460 | TGAAAGAAATGCAGCAATTTTCCA | 58.634 | 33.333 | 15.11 | 6.41 | 31.25 | 3.53 |
3596 | 4915 | 2.398554 | CCAACTCACCCGCATTCCG | 61.399 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
3656 | 4975 | 1.549037 | GCTTCCACAACCCCCATAACA | 60.549 | 52.381 | 0.00 | 0.00 | 0.00 | 2.41 |
3749 | 5070 | 4.705110 | TGGAAGTCCAGTGAAATGAGAA | 57.295 | 40.909 | 0.00 | 0.00 | 42.01 | 2.87 |
3889 | 5213 | 1.586042 | CACAGCAAACACACGCACC | 60.586 | 57.895 | 0.00 | 0.00 | 0.00 | 5.01 |
3895 | 5219 | 2.411504 | AAACACACGCACCCACACC | 61.412 | 57.895 | 0.00 | 0.00 | 0.00 | 4.16 |
3968 | 5326 | 4.034279 | CACAACTCAACAAGCCCAAAAATG | 59.966 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
4018 | 5400 | 1.227674 | CTAATCCGGCTCTGGTGGC | 60.228 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
4384 | 5781 | 2.838736 | ACGCAACAGAAGAAGATGTGT | 58.161 | 42.857 | 0.00 | 0.00 | 0.00 | 3.72 |
4406 | 5803 | 2.808919 | TCGAGTCTTCTTCTGTCCCAT | 58.191 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
4551 | 5949 | 1.680651 | CCACGAGAGGCTCAGGTCT | 60.681 | 63.158 | 18.26 | 0.00 | 0.00 | 3.85 |
4578 | 5977 | 0.748005 | GTTGCGATGGCCTGGTACAT | 60.748 | 55.000 | 3.32 | 5.84 | 38.85 | 2.29 |
4583 | 5982 | 1.879372 | CGATGGCCTGGTACATGGATG | 60.879 | 57.143 | 3.32 | 0.00 | 38.20 | 3.51 |
4605 | 6004 | 1.552792 | AGTGGAGAAGCTACCTGAAGC | 59.447 | 52.381 | 0.00 | 0.00 | 43.11 | 3.86 |
4899 | 6307 | 1.684734 | GGAGGACCGGGAGCAACTA | 60.685 | 63.158 | 6.32 | 0.00 | 0.00 | 2.24 |
4903 | 6311 | 2.633481 | GAGGACCGGGAGCAACTATATT | 59.367 | 50.000 | 6.32 | 0.00 | 0.00 | 1.28 |
4926 | 6334 | 1.627329 | AGATTGCCAGAACTGAGAGCA | 59.373 | 47.619 | 3.19 | 2.17 | 0.00 | 4.26 |
4990 | 6398 | 8.367911 | AGGTATTTATTCTGAATGATGCGTAGA | 58.632 | 33.333 | 13.01 | 0.00 | 0.00 | 2.59 |
4999 | 6407 | 2.543777 | TGATGCGTAGATAAAGGCCC | 57.456 | 50.000 | 0.00 | 0.00 | 0.00 | 5.80 |
5002 | 6410 | 0.693092 | TGCGTAGATAAAGGCCCCCT | 60.693 | 55.000 | 0.00 | 0.00 | 33.87 | 4.79 |
5018 | 6426 | 0.106519 | CCCTTCCCCATTCGCAATCT | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
5081 | 6489 | 1.224592 | GACATGATCCCAAGCCCGT | 59.775 | 57.895 | 0.00 | 0.00 | 0.00 | 5.28 |
5100 | 6787 | 0.757561 | TCTTGATCCCGCGGTATCCA | 60.758 | 55.000 | 25.74 | 15.52 | 0.00 | 3.41 |
5193 | 6880 | 2.647802 | AGTAGCCCAACACCATAACCTT | 59.352 | 45.455 | 0.00 | 0.00 | 0.00 | 3.50 |
5221 | 6908 | 4.985538 | TGTCAAAGTTAATCTTGAGCCCT | 58.014 | 39.130 | 3.20 | 0.00 | 36.40 | 5.19 |
5291 | 6981 | 2.124570 | CGGAGCCTTCCACCATGG | 60.125 | 66.667 | 11.19 | 11.19 | 44.26 | 3.66 |
5338 | 7028 | 1.375326 | GGATACGCCATTCCCTCCC | 59.625 | 63.158 | 0.00 | 0.00 | 36.34 | 4.30 |
5439 | 7129 | 4.904253 | TGTTAAACAAGAACGGGGAAAG | 57.096 | 40.909 | 0.00 | 0.00 | 0.00 | 2.62 |
5492 | 7182 | 2.629909 | GGGAAGTAGGGTCCAATCTCCT | 60.630 | 54.545 | 0.00 | 0.00 | 36.83 | 3.69 |
5513 | 7203 | 1.435577 | GTTGATGTTAACGGCGGTCT | 58.564 | 50.000 | 13.24 | 0.00 | 0.00 | 3.85 |
5555 | 7245 | 0.321034 | GACCCTGGTAACCCAACGAC | 60.321 | 60.000 | 0.00 | 0.00 | 41.27 | 4.34 |
5556 | 7246 | 1.055551 | ACCCTGGTAACCCAACGACA | 61.056 | 55.000 | 0.00 | 0.00 | 41.27 | 4.35 |
5563 | 7253 | 3.952323 | TGGTAACCCAACGACAATTGAAA | 59.048 | 39.130 | 13.59 | 0.00 | 37.98 | 2.69 |
5615 | 7305 | 2.292267 | CCCAGCTGACCATGTCATAAC | 58.708 | 52.381 | 17.39 | 0.00 | 41.94 | 1.89 |
5668 | 7358 | 0.468226 | TGAGGTGTTTGGAGCGAACT | 59.532 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5866 | 7560 | 1.609061 | CGAAGGCATCAGACACCTTGT | 60.609 | 52.381 | 10.04 | 0.00 | 43.82 | 3.16 |
5876 | 7570 | 0.678048 | GACACCTTGTGGATGAGGGC | 60.678 | 60.000 | 0.00 | 0.00 | 37.94 | 5.19 |
5901 | 7595 | 1.145571 | TCCCATAATTAAGGCGGGCT | 58.854 | 50.000 | 0.00 | 0.00 | 36.79 | 5.19 |
5916 | 7610 | 2.737830 | GCTAGGTCGATGGAGCCC | 59.262 | 66.667 | 3.06 | 0.00 | 41.62 | 5.19 |
6012 | 7706 | 4.181010 | CCATCTGGCCCCGGAGTG | 62.181 | 72.222 | 0.73 | 0.00 | 34.49 | 3.51 |
6033 | 7727 | 0.606401 | ACGTCAGGTTCATGCCCTTG | 60.606 | 55.000 | 1.32 | 0.00 | 0.00 | 3.61 |
6052 | 7746 | 3.958629 | ATGGCAGCCCAGACCTCCT | 62.959 | 63.158 | 9.64 | 0.00 | 46.24 | 3.69 |
6132 | 7826 | 1.676678 | GCTAGATGTCGTGGGCCAGA | 61.677 | 60.000 | 6.40 | 3.68 | 0.00 | 3.86 |
6137 | 7831 | 3.050275 | GTCGTGGGCCAGAGCAAC | 61.050 | 66.667 | 6.40 | 0.00 | 42.56 | 4.17 |
6166 | 7860 | 0.104725 | AGGGGAGGCTGAGAATAGGG | 60.105 | 60.000 | 0.00 | 0.00 | 0.00 | 3.53 |
6168 | 7862 | 1.757949 | GGAGGCTGAGAATAGGGCC | 59.242 | 63.158 | 0.00 | 0.00 | 44.38 | 5.80 |
6205 | 7899 | 2.365105 | GGGTCCGGATGTCCTCCA | 60.365 | 66.667 | 7.81 | 0.00 | 45.24 | 3.86 |
6211 | 7905 | 2.501610 | GGATGTCCTCCAGTCGCC | 59.498 | 66.667 | 0.00 | 0.00 | 44.26 | 5.54 |
6252 | 7946 | 1.273327 | CAAAGCAAGGGGATGGTGTTC | 59.727 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
6253 | 7947 | 0.609131 | AAGCAAGGGGATGGTGTTCG | 60.609 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
6324 | 8019 | 2.608623 | CCCTTGAGGACCCAATTTTGT | 58.391 | 47.619 | 0.00 | 0.00 | 38.24 | 2.83 |
6327 | 8022 | 3.243839 | CCTTGAGGACCCAATTTTGTGTG | 60.244 | 47.826 | 0.00 | 0.00 | 37.39 | 3.82 |
6331 | 8026 | 1.047801 | GACCCAATTTTGTGTGCCCT | 58.952 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
6336 | 8031 | 1.068895 | CAATTTTGTGTGCCCTGCAGA | 59.931 | 47.619 | 17.39 | 0.00 | 40.08 | 4.26 |
6345 | 8040 | 2.185350 | CCCTGCAGACGCCAGTAG | 59.815 | 66.667 | 17.39 | 0.00 | 37.32 | 2.57 |
6360 | 8055 | 0.851469 | AGTAGGCCTCCTCATCCGTA | 59.149 | 55.000 | 9.68 | 0.00 | 34.61 | 4.02 |
6363 | 8058 | 2.930109 | AGGCCTCCTCATCCGTATAT | 57.070 | 50.000 | 0.00 | 0.00 | 0.00 | 0.86 |
6384 | 8079 | 1.870064 | TGACCATGAGCTGATCCTCA | 58.130 | 50.000 | 0.00 | 4.41 | 45.16 | 3.86 |
6396 | 8091 | 2.708386 | GATCCTCAAGATCGTACCGG | 57.292 | 55.000 | 0.00 | 0.00 | 42.06 | 5.28 |
6399 | 8094 | 1.064906 | TCCTCAAGATCGTACCGGAGT | 60.065 | 52.381 | 9.46 | 0.00 | 0.00 | 3.85 |
6401 | 8096 | 2.548904 | CCTCAAGATCGTACCGGAGTAG | 59.451 | 54.545 | 9.46 | 0.00 | 0.00 | 2.57 |
6405 | 8100 | 0.310232 | GATCGTACCGGAGTAGCCAC | 59.690 | 60.000 | 9.46 | 0.00 | 35.94 | 5.01 |
6413 | 8108 | 4.659986 | GAGTAGCCACTCCTCCGA | 57.340 | 61.111 | 0.13 | 0.00 | 44.72 | 4.55 |
6414 | 8109 | 2.410466 | GAGTAGCCACTCCTCCGAG | 58.590 | 63.158 | 0.13 | 0.00 | 44.72 | 4.63 |
6416 | 8111 | 1.380112 | GTAGCCACTCCTCCGAGGT | 60.380 | 63.158 | 14.36 | 0.00 | 40.77 | 3.85 |
6417 | 8112 | 0.106819 | GTAGCCACTCCTCCGAGGTA | 60.107 | 60.000 | 14.36 | 0.79 | 40.77 | 3.08 |
6425 | 8120 | 2.758737 | CTCCGAGGTAAGGCCCGT | 60.759 | 66.667 | 0.00 | 0.00 | 38.26 | 5.28 |
6428 | 8123 | 3.072468 | CGAGGTAAGGCCCGTGGA | 61.072 | 66.667 | 0.00 | 0.00 | 38.26 | 4.02 |
6432 | 8127 | 2.183555 | GTAAGGCCCGTGGAGTCG | 59.816 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
6458 | 8153 | 1.074471 | GGTCTAGGGCCTGGATGGA | 60.074 | 63.158 | 23.30 | 6.86 | 38.35 | 3.41 |
6459 | 8154 | 1.124477 | GGTCTAGGGCCTGGATGGAG | 61.124 | 65.000 | 23.30 | 7.70 | 38.35 | 3.86 |
6479 | 8174 | 3.173965 | AGTCGAGGAGGGATTTCTTTCA | 58.826 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
6480 | 8175 | 3.777522 | AGTCGAGGAGGGATTTCTTTCAT | 59.222 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
6486 | 8181 | 3.313803 | GGAGGGATTTCTTTCATTCTCGC | 59.686 | 47.826 | 0.00 | 0.00 | 0.00 | 5.03 |
6489 | 8184 | 3.065925 | GGGATTTCTTTCATTCTCGCAGG | 59.934 | 47.826 | 0.00 | 0.00 | 0.00 | 4.85 |
6491 | 8186 | 4.156739 | GGATTTCTTTCATTCTCGCAGGTT | 59.843 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
6492 | 8187 | 4.749245 | TTTCTTTCATTCTCGCAGGTTC | 57.251 | 40.909 | 0.00 | 0.00 | 0.00 | 3.62 |
6500 | 8195 | 4.697756 | TCGCAGGTTCCGGCCAAG | 62.698 | 66.667 | 2.24 | 0.00 | 0.00 | 3.61 |
6529 | 8224 | 6.899393 | TCAGGCACATTCTGTCTTTTATTT | 57.101 | 33.333 | 0.00 | 0.00 | 29.71 | 1.40 |
6621 | 8336 | 3.877508 | GGAACATGTACAGGCATAACTCC | 59.122 | 47.826 | 7.57 | 1.07 | 0.00 | 3.85 |
6810 | 8698 | 8.227507 | AGTATCTTTTATATTGCACCCAATCCT | 58.772 | 33.333 | 0.00 | 0.00 | 41.68 | 3.24 |
6918 | 8835 | 6.888105 | ACTTCACCTTTTTGACATTTCCAAT | 58.112 | 32.000 | 0.00 | 0.00 | 0.00 | 3.16 |
6966 | 8883 | 1.544724 | TTTGCAGCCCATAAGACACC | 58.455 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
6967 | 8884 | 0.323360 | TTGCAGCCCATAAGACACCC | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
6968 | 8885 | 1.207488 | TGCAGCCCATAAGACACCCT | 61.207 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
7035 | 8952 | 5.677319 | TTGGGTCCTGAGTTCTATACTTG | 57.323 | 43.478 | 0.00 | 0.00 | 37.17 | 3.16 |
7192 | 9110 | 3.521727 | ACCCAAGGTCTAGAAGACACAT | 58.478 | 45.455 | 9.15 | 0.00 | 46.79 | 3.21 |
7194 | 9112 | 3.265791 | CCAAGGTCTAGAAGACACATGC | 58.734 | 50.000 | 9.15 | 0.00 | 46.79 | 4.06 |
7206 | 9124 | 6.511416 | AGAAGACACATGCTCATATCTGTAC | 58.489 | 40.000 | 0.00 | 0.00 | 0.00 | 2.90 |
7224 | 9142 | 4.153411 | TGTACCCCTAAACCACCAAATTG | 58.847 | 43.478 | 0.00 | 0.00 | 0.00 | 2.32 |
7227 | 9145 | 4.041464 | ACCCCTAAACCACCAAATTGTTT | 58.959 | 39.130 | 0.00 | 0.00 | 36.30 | 2.83 |
7316 | 9235 | 7.966339 | ATGGGTTGGATGATATTTATGATGG | 57.034 | 36.000 | 0.00 | 0.00 | 0.00 | 3.51 |
7318 | 9237 | 5.954150 | GGGTTGGATGATATTTATGATGGCT | 59.046 | 40.000 | 0.00 | 0.00 | 0.00 | 4.75 |
7319 | 9238 | 6.096001 | GGGTTGGATGATATTTATGATGGCTC | 59.904 | 42.308 | 0.00 | 0.00 | 0.00 | 4.70 |
7320 | 9239 | 6.660521 | GGTTGGATGATATTTATGATGGCTCA | 59.339 | 38.462 | 0.00 | 0.00 | 35.41 | 4.26 |
7321 | 9240 | 7.341256 | GGTTGGATGATATTTATGATGGCTCAT | 59.659 | 37.037 | 5.11 | 5.11 | 44.39 | 2.90 |
7372 | 9297 | 8.946797 | AATTTATGAGAGCTATAGCCCATTTT | 57.053 | 30.769 | 21.17 | 12.46 | 43.38 | 1.82 |
7373 | 9298 | 7.986085 | TTTATGAGAGCTATAGCCCATTTTC | 57.014 | 36.000 | 21.17 | 10.85 | 43.38 | 2.29 |
7374 | 9299 | 5.573380 | ATGAGAGCTATAGCCCATTTTCA | 57.427 | 39.130 | 21.17 | 13.20 | 43.38 | 2.69 |
7375 | 9300 | 5.372343 | TGAGAGCTATAGCCCATTTTCAA | 57.628 | 39.130 | 21.17 | 1.58 | 43.38 | 2.69 |
7376 | 9301 | 5.371526 | TGAGAGCTATAGCCCATTTTCAAG | 58.628 | 41.667 | 21.17 | 0.00 | 43.38 | 3.02 |
7377 | 9302 | 5.130975 | TGAGAGCTATAGCCCATTTTCAAGA | 59.869 | 40.000 | 21.17 | 0.00 | 43.38 | 3.02 |
7378 | 9303 | 6.183361 | TGAGAGCTATAGCCCATTTTCAAGAT | 60.183 | 38.462 | 21.17 | 0.00 | 43.38 | 2.40 |
7379 | 9304 | 7.016563 | TGAGAGCTATAGCCCATTTTCAAGATA | 59.983 | 37.037 | 21.17 | 0.00 | 43.38 | 1.98 |
7380 | 9305 | 7.164803 | AGAGCTATAGCCCATTTTCAAGATAC | 58.835 | 38.462 | 21.17 | 0.00 | 43.38 | 2.24 |
7381 | 9306 | 7.017056 | AGAGCTATAGCCCATTTTCAAGATACT | 59.983 | 37.037 | 21.17 | 0.00 | 43.38 | 2.12 |
7382 | 9307 | 7.521669 | AGCTATAGCCCATTTTCAAGATACTT | 58.478 | 34.615 | 21.17 | 0.00 | 43.38 | 2.24 |
7383 | 9308 | 7.663493 | AGCTATAGCCCATTTTCAAGATACTTC | 59.337 | 37.037 | 21.17 | 0.00 | 43.38 | 3.01 |
7384 | 9309 | 7.445402 | GCTATAGCCCATTTTCAAGATACTTCA | 59.555 | 37.037 | 14.13 | 0.00 | 34.31 | 3.02 |
7385 | 9310 | 9.512588 | CTATAGCCCATTTTCAAGATACTTCAT | 57.487 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
7585 | 9511 | 4.936891 | GGCATAAGTTTGGCCTTTATCAG | 58.063 | 43.478 | 3.32 | 0.00 | 44.32 | 2.90 |
7669 | 9595 | 1.475751 | CCGCTTAAGGATCATGGCAGT | 60.476 | 52.381 | 4.29 | 0.00 | 0.00 | 4.40 |
7848 | 9802 | 1.555967 | TCCATTTAGCACCAAAGCCC | 58.444 | 50.000 | 0.00 | 0.00 | 34.23 | 5.19 |
7871 | 9825 | 6.243900 | CCCTCTGGTGCATCATAGAATTAAT | 58.756 | 40.000 | 13.63 | 0.00 | 0.00 | 1.40 |
8035 | 9989 | 2.539547 | CCTCAAACACAGCACTGTTTCG | 60.540 | 50.000 | 0.00 | 5.89 | 41.47 | 3.46 |
8279 | 10241 | 1.884235 | CAGGAACACAGTTCTGGGAC | 58.116 | 55.000 | 9.16 | 2.89 | 0.00 | 4.46 |
8285 | 10247 | 1.021202 | CACAGTTCTGGGACGCAAAA | 58.979 | 50.000 | 4.82 | 0.00 | 0.00 | 2.44 |
8309 | 10271 | 2.155279 | GAGAAAGAACTTGGTGAGGGC | 58.845 | 52.381 | 0.00 | 0.00 | 0.00 | 5.19 |
8379 | 10341 | 3.724374 | TCGATTTCGACACTTGGAGTTT | 58.276 | 40.909 | 0.00 | 0.00 | 44.22 | 2.66 |
8448 | 10410 | 1.067425 | TGCATGATTCTGTTTGCTGGC | 60.067 | 47.619 | 0.00 | 0.00 | 36.10 | 4.85 |
8560 | 10522 | 0.601311 | GCTTTCTGTCGCACAGGTCT | 60.601 | 55.000 | 13.87 | 0.00 | 45.94 | 3.85 |
8592 | 10556 | 7.164230 | TCTTCTGATGTCTCTTCTTACCTTC | 57.836 | 40.000 | 0.00 | 0.00 | 0.00 | 3.46 |
8606 | 10570 | 8.587608 | TCTTCTTACCTTCGTCTTAATAAACCA | 58.412 | 33.333 | 0.00 | 0.00 | 0.00 | 3.67 |
8710 | 10674 | 1.677576 | CTGAAGTGGCACAAGAAAGCA | 59.322 | 47.619 | 21.41 | 5.75 | 44.16 | 3.91 |
8734 | 10698 | 1.510480 | GAGCTGCCGTCAAAGCACTT | 61.510 | 55.000 | 0.00 | 0.00 | 42.06 | 3.16 |
8762 | 10726 | 0.897621 | ACATGGTCTCAGCATCGTCA | 59.102 | 50.000 | 0.00 | 0.00 | 33.46 | 4.35 |
8806 | 10770 | 0.468214 | CCTCCGACAGATAGCTGGGA | 60.468 | 60.000 | 13.45 | 9.22 | 46.60 | 4.37 |
8830 | 10794 | 8.709646 | GGAATGTTGATATCTTACACGTATTCC | 58.290 | 37.037 | 16.79 | 16.79 | 0.00 | 3.01 |
8925 | 10890 | 1.805869 | CTGAGGCAAGAAGTGGAGTG | 58.194 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
8935 | 10900 | 0.398318 | AAGTGGAGTGAAGCTGGGAC | 59.602 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
8957 | 10922 | 1.466360 | GCACGCGCTCTTCAATGAAAT | 60.466 | 47.619 | 5.73 | 0.00 | 34.30 | 2.17 |
8959 | 10924 | 2.076100 | ACGCGCTCTTCAATGAAATCA | 58.924 | 42.857 | 5.73 | 0.00 | 0.00 | 2.57 |
8965 | 10930 | 5.449041 | GCGCTCTTCAATGAAATCATAACCA | 60.449 | 40.000 | 0.00 | 0.00 | 35.10 | 3.67 |
8966 | 10931 | 6.732154 | CGCTCTTCAATGAAATCATAACCAT | 58.268 | 36.000 | 0.00 | 0.00 | 35.10 | 3.55 |
8967 | 10932 | 7.520453 | GCGCTCTTCAATGAAATCATAACCATA | 60.520 | 37.037 | 0.00 | 0.00 | 35.10 | 2.74 |
9000 | 10965 | 1.480545 | TCGTCGATCCATTGATGTGGT | 59.519 | 47.619 | 0.00 | 0.00 | 40.27 | 4.16 |
9002 | 10967 | 2.677836 | CGTCGATCCATTGATGTGGTTT | 59.322 | 45.455 | 0.00 | 0.00 | 40.27 | 3.27 |
9216 | 11181 | 9.575868 | ACAATAGATATACATATACTCCCTCCG | 57.424 | 37.037 | 0.00 | 0.00 | 0.00 | 4.63 |
9217 | 11182 | 9.575868 | CAATAGATATACATATACTCCCTCCGT | 57.424 | 37.037 | 0.00 | 0.00 | 0.00 | 4.69 |
9220 | 11185 | 8.522542 | AGATATACATATACTCCCTCCGTTTC | 57.477 | 38.462 | 0.00 | 0.00 | 0.00 | 2.78 |
9221 | 11186 | 8.337739 | AGATATACATATACTCCCTCCGTTTCT | 58.662 | 37.037 | 0.00 | 0.00 | 0.00 | 2.52 |
9222 | 11187 | 9.624373 | GATATACATATACTCCCTCCGTTTCTA | 57.376 | 37.037 | 0.00 | 0.00 | 0.00 | 2.10 |
9223 | 11188 | 9.986157 | ATATACATATACTCCCTCCGTTTCTAA | 57.014 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
9224 | 11189 | 8.716674 | ATACATATACTCCCTCCGTTTCTAAA | 57.283 | 34.615 | 0.00 | 0.00 | 0.00 | 1.85 |
9225 | 11190 | 7.613551 | ACATATACTCCCTCCGTTTCTAAAT | 57.386 | 36.000 | 0.00 | 0.00 | 0.00 | 1.40 |
9226 | 11191 | 8.716674 | ACATATACTCCCTCCGTTTCTAAATA | 57.283 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
9227 | 11192 | 9.322769 | ACATATACTCCCTCCGTTTCTAAATAT | 57.677 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
9230 | 11195 | 8.904099 | ATACTCCCTCCGTTTCTAAATATTTG | 57.096 | 34.615 | 11.05 | 1.65 | 0.00 | 2.32 |
9231 | 11196 | 6.718294 | ACTCCCTCCGTTTCTAAATATTTGT | 58.282 | 36.000 | 11.05 | 0.00 | 0.00 | 2.83 |
9232 | 11197 | 6.822170 | ACTCCCTCCGTTTCTAAATATTTGTC | 59.178 | 38.462 | 11.05 | 0.00 | 0.00 | 3.18 |
9233 | 11198 | 6.954232 | TCCCTCCGTTTCTAAATATTTGTCT | 58.046 | 36.000 | 11.05 | 0.00 | 0.00 | 3.41 |
9234 | 11199 | 7.399634 | TCCCTCCGTTTCTAAATATTTGTCTT | 58.600 | 34.615 | 11.05 | 0.00 | 0.00 | 3.01 |
9235 | 11200 | 7.886446 | TCCCTCCGTTTCTAAATATTTGTCTTT | 59.114 | 33.333 | 11.05 | 0.00 | 0.00 | 2.52 |
9236 | 11201 | 8.182227 | CCCTCCGTTTCTAAATATTTGTCTTTC | 58.818 | 37.037 | 11.05 | 0.00 | 0.00 | 2.62 |
9237 | 11202 | 8.947115 | CCTCCGTTTCTAAATATTTGTCTTTCT | 58.053 | 33.333 | 11.05 | 0.00 | 0.00 | 2.52 |
9253 | 11218 | 8.964476 | TTGTCTTTCTAGAGATTTCAACAAGT | 57.036 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
9254 | 11219 | 8.370493 | TGTCTTTCTAGAGATTTCAACAAGTG | 57.630 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
9255 | 11220 | 8.204160 | TGTCTTTCTAGAGATTTCAACAAGTGA | 58.796 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
9256 | 11221 | 8.491950 | GTCTTTCTAGAGATTTCAACAAGTGAC | 58.508 | 37.037 | 0.00 | 0.00 | 35.39 | 3.67 |
9257 | 11222 | 8.424918 | TCTTTCTAGAGATTTCAACAAGTGACT | 58.575 | 33.333 | 0.00 | 0.00 | 35.39 | 3.41 |
9258 | 11223 | 9.698309 | CTTTCTAGAGATTTCAACAAGTGACTA | 57.302 | 33.333 | 0.00 | 0.00 | 35.39 | 2.59 |
9259 | 11224 | 9.477484 | TTTCTAGAGATTTCAACAAGTGACTAC | 57.523 | 33.333 | 0.00 | 0.00 | 35.39 | 2.73 |
9260 | 11225 | 8.178313 | TCTAGAGATTTCAACAAGTGACTACA | 57.822 | 34.615 | 0.00 | 0.00 | 35.39 | 2.74 |
9261 | 11226 | 8.807118 | TCTAGAGATTTCAACAAGTGACTACAT | 58.193 | 33.333 | 0.00 | 0.00 | 35.39 | 2.29 |
9263 | 11228 | 8.764524 | AGAGATTTCAACAAGTGACTACATAC | 57.235 | 34.615 | 0.00 | 0.00 | 35.39 | 2.39 |
9264 | 11229 | 7.542477 | AGAGATTTCAACAAGTGACTACATACG | 59.458 | 37.037 | 0.00 | 0.00 | 35.39 | 3.06 |
9265 | 11230 | 6.590292 | AGATTTCAACAAGTGACTACATACGG | 59.410 | 38.462 | 0.00 | 0.00 | 35.39 | 4.02 |
9266 | 11231 | 5.456548 | TTCAACAAGTGACTACATACGGA | 57.543 | 39.130 | 0.00 | 0.00 | 35.39 | 4.69 |
9267 | 11232 | 5.055642 | TCAACAAGTGACTACATACGGAG | 57.944 | 43.478 | 0.00 | 0.00 | 0.00 | 4.63 |
9268 | 11233 | 3.505464 | ACAAGTGACTACATACGGAGC | 57.495 | 47.619 | 0.00 | 0.00 | 0.00 | 4.70 |
9269 | 11234 | 2.823747 | ACAAGTGACTACATACGGAGCA | 59.176 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
9270 | 11235 | 3.257375 | ACAAGTGACTACATACGGAGCAA | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
9271 | 11236 | 4.242475 | CAAGTGACTACATACGGAGCAAA | 58.758 | 43.478 | 0.00 | 0.00 | 0.00 | 3.68 |
9272 | 11237 | 4.530710 | AGTGACTACATACGGAGCAAAA | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
9273 | 11238 | 5.086104 | AGTGACTACATACGGAGCAAAAT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
9274 | 11239 | 4.870426 | AGTGACTACATACGGAGCAAAATG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
9275 | 11240 | 4.868171 | GTGACTACATACGGAGCAAAATGA | 59.132 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
9276 | 11241 | 5.005779 | GTGACTACATACGGAGCAAAATGAG | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.90 |
9277 | 11242 | 5.086104 | ACTACATACGGAGCAAAATGAGT | 57.914 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
9278 | 11243 | 4.870426 | ACTACATACGGAGCAAAATGAGTG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
9279 | 11244 | 3.674997 | ACATACGGAGCAAAATGAGTGT | 58.325 | 40.909 | 0.00 | 0.00 | 0.00 | 3.55 |
9280 | 11245 | 4.827692 | ACATACGGAGCAAAATGAGTGTA | 58.172 | 39.130 | 0.00 | 0.00 | 0.00 | 2.90 |
9281 | 11246 | 5.428253 | ACATACGGAGCAAAATGAGTGTAT | 58.572 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
9282 | 11247 | 5.523916 | ACATACGGAGCAAAATGAGTGTATC | 59.476 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
9283 | 11248 | 4.207891 | ACGGAGCAAAATGAGTGTATCT | 57.792 | 40.909 | 0.00 | 0.00 | 0.00 | 1.98 |
9284 | 11249 | 5.339008 | ACGGAGCAAAATGAGTGTATCTA | 57.661 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
9285 | 11250 | 5.109903 | ACGGAGCAAAATGAGTGTATCTAC | 58.890 | 41.667 | 0.00 | 0.00 | 0.00 | 2.59 |
9286 | 11251 | 5.109210 | CGGAGCAAAATGAGTGTATCTACA | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
9323 | 11288 | 9.511272 | TGTCTACATACATCCGTATATTGTACT | 57.489 | 33.333 | 0.00 | 0.00 | 36.11 | 2.73 |
9324 | 11289 | 9.985318 | GTCTACATACATCCGTATATTGTACTC | 57.015 | 37.037 | 0.00 | 0.00 | 36.11 | 2.59 |
9325 | 11290 | 9.955102 | TCTACATACATCCGTATATTGTACTCT | 57.045 | 33.333 | 0.00 | 0.00 | 36.11 | 3.24 |
9326 | 11291 | 9.989869 | CTACATACATCCGTATATTGTACTCTG | 57.010 | 37.037 | 0.00 | 0.00 | 36.11 | 3.35 |
9327 | 11292 | 8.405418 | ACATACATCCGTATATTGTACTCTGT | 57.595 | 34.615 | 0.00 | 0.00 | 36.11 | 3.41 |
9328 | 11293 | 8.857098 | ACATACATCCGTATATTGTACTCTGTT | 58.143 | 33.333 | 0.00 | 0.00 | 36.11 | 3.16 |
9329 | 11294 | 9.692749 | CATACATCCGTATATTGTACTCTGTTT | 57.307 | 33.333 | 0.00 | 0.00 | 36.11 | 2.83 |
9330 | 11295 | 9.692749 | ATACATCCGTATATTGTACTCTGTTTG | 57.307 | 33.333 | 0.00 | 0.00 | 36.53 | 2.93 |
9331 | 11296 | 7.778083 | ACATCCGTATATTGTACTCTGTTTGA | 58.222 | 34.615 | 0.00 | 0.00 | 0.00 | 2.69 |
9332 | 11297 | 8.255206 | ACATCCGTATATTGTACTCTGTTTGAA | 58.745 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
9333 | 11298 | 9.093970 | CATCCGTATATTGTACTCTGTTTGAAA | 57.906 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
9334 | 11299 | 9.832445 | ATCCGTATATTGTACTCTGTTTGAAAT | 57.168 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
9335 | 11300 | 9.093970 | TCCGTATATTGTACTCTGTTTGAAATG | 57.906 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
9336 | 11301 | 8.879759 | CCGTATATTGTACTCTGTTTGAAATGT | 58.120 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
9337 | 11302 | 9.901724 | CGTATATTGTACTCTGTTTGAAATGTC | 57.098 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
9342 | 11307 | 9.778741 | ATTGTACTCTGTTTGAAATGTCTAGAA | 57.221 | 29.630 | 0.00 | 0.00 | 0.00 | 2.10 |
9343 | 11308 | 9.607988 | TTGTACTCTGTTTGAAATGTCTAGAAA | 57.392 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
9344 | 11309 | 9.607988 | TGTACTCTGTTTGAAATGTCTAGAAAA | 57.392 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
9347 | 11312 | 8.956426 | ACTCTGTTTGAAATGTCTAGAAAAACA | 58.044 | 29.630 | 0.00 | 4.80 | 35.45 | 2.83 |
9348 | 11313 | 9.787532 | CTCTGTTTGAAATGTCTAGAAAAACAA | 57.212 | 29.630 | 0.00 | 0.00 | 36.09 | 2.83 |
9365 | 11330 | 8.520351 | AGAAAAACAAATATTTAGGAACGGAGG | 58.480 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
9366 | 11331 | 6.769134 | AAACAAATATTTAGGAACGGAGGG | 57.231 | 37.500 | 0.00 | 0.00 | 0.00 | 4.30 |
9367 | 11332 | 5.703730 | ACAAATATTTAGGAACGGAGGGA | 57.296 | 39.130 | 0.00 | 0.00 | 0.00 | 4.20 |
9368 | 11333 | 5.681639 | ACAAATATTTAGGAACGGAGGGAG | 58.318 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
9464 | 11429 | 9.758021 | ATTCCATGCTCCAAACATGATATAATA | 57.242 | 29.630 | 0.00 | 0.00 | 46.33 | 0.98 |
9524 | 11489 | 8.837389 | AGTAGAATGACCAAGTTTTACAAGAAC | 58.163 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
9539 | 11504 | 7.873719 | TTACAAGAACTTTCAAGTGGATGAA | 57.126 | 32.000 | 0.00 | 0.00 | 39.66 | 2.57 |
9577 | 11542 | 0.107703 | GTTGGAGATGGGATCGCACA | 60.108 | 55.000 | 15.49 | 5.66 | 0.00 | 4.57 |
9596 | 11561 | 5.581605 | GCACATGTTTATGGATTGAACGAT | 58.418 | 37.500 | 0.00 | 0.00 | 38.66 | 3.73 |
9606 | 11571 | 6.698008 | ATGGATTGAACGATATTCAAGCAA | 57.302 | 33.333 | 16.70 | 8.26 | 44.07 | 3.91 |
9611 | 11576 | 6.653273 | TTGAACGATATTCAAGCAAGAGAG | 57.347 | 37.500 | 0.00 | 0.00 | 33.90 | 3.20 |
9613 | 11578 | 5.807520 | TGAACGATATTCAAGCAAGAGAGAC | 59.192 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
9680 | 11646 | 2.684927 | GCCCACATGCCACTCTTCTATT | 60.685 | 50.000 | 0.00 | 0.00 | 0.00 | 1.73 |
9687 | 11653 | 1.207329 | GCCACTCTTCTATTCCACCGT | 59.793 | 52.381 | 0.00 | 0.00 | 0.00 | 4.83 |
9688 | 11654 | 2.429610 | GCCACTCTTCTATTCCACCGTA | 59.570 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
9689 | 11655 | 3.737355 | GCCACTCTTCTATTCCACCGTAC | 60.737 | 52.174 | 0.00 | 0.00 | 0.00 | 3.67 |
9690 | 11656 | 3.181478 | CCACTCTTCTATTCCACCGTACC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 3.34 |
9691 | 11657 | 3.446161 | CACTCTTCTATTCCACCGTACCA | 59.554 | 47.826 | 0.00 | 0.00 | 0.00 | 3.25 |
9692 | 11658 | 3.446516 | ACTCTTCTATTCCACCGTACCAC | 59.553 | 47.826 | 0.00 | 0.00 | 0.00 | 4.16 |
9693 | 11659 | 2.424601 | TCTTCTATTCCACCGTACCACG | 59.575 | 50.000 | 0.00 | 0.00 | 42.11 | 4.94 |
9734 | 11700 | 1.071385 | GGCCTCGTGATCTCCATGAAT | 59.929 | 52.381 | 0.00 | 0.00 | 40.07 | 2.57 |
9777 | 11743 | 7.684937 | ACTATAACTACTAGTAGAATGCCCG | 57.315 | 40.000 | 31.93 | 16.78 | 36.97 | 6.13 |
9778 | 11744 | 7.230027 | ACTATAACTACTAGTAGAATGCCCGT | 58.770 | 38.462 | 31.93 | 17.30 | 36.97 | 5.28 |
9779 | 11745 | 4.650754 | AACTACTAGTAGAATGCCCGTG | 57.349 | 45.455 | 31.93 | 6.88 | 36.97 | 4.94 |
9780 | 11746 | 2.361438 | ACTACTAGTAGAATGCCCGTGC | 59.639 | 50.000 | 31.93 | 0.00 | 36.97 | 5.34 |
9781 | 11747 | 0.102481 | ACTAGTAGAATGCCCGTGCG | 59.898 | 55.000 | 3.59 | 0.00 | 41.78 | 5.34 |
9782 | 11748 | 0.102481 | CTAGTAGAATGCCCGTGCGT | 59.898 | 55.000 | 0.00 | 0.00 | 41.78 | 5.24 |
9784 | 11750 | 1.019278 | AGTAGAATGCCCGTGCGTTG | 61.019 | 55.000 | 0.86 | 0.00 | 46.55 | 4.10 |
9785 | 11751 | 2.395360 | TAGAATGCCCGTGCGTTGC | 61.395 | 57.895 | 0.86 | 0.00 | 46.55 | 4.17 |
9786 | 11752 | 4.776647 | GAATGCCCGTGCGTTGCC | 62.777 | 66.667 | 0.86 | 0.00 | 46.55 | 4.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
12 | 13 | 1.297893 | GCGCTCGAATTGGTCATGC | 60.298 | 57.895 | 0.00 | 0.00 | 0.00 | 4.06 |
43 | 1051 | 2.264480 | CACGAATCCGGTGCTCCA | 59.736 | 61.111 | 0.00 | 0.00 | 40.78 | 3.86 |
77 | 1085 | 4.634443 | GGTACACCTGGACATTGTGTAATC | 59.366 | 45.833 | 0.00 | 7.96 | 44.45 | 1.75 |
81 | 1089 | 2.054799 | AGGTACACCTGGACATTGTGT | 58.945 | 47.619 | 0.00 | 11.03 | 46.55 | 3.72 |
102 | 1110 | 3.496130 | CAGCTCCTCATTAACTAATGCCG | 59.504 | 47.826 | 4.82 | 0.00 | 42.06 | 5.69 |
113 | 1121 | 1.891150 | CTTTTGTGCCAGCTCCTCATT | 59.109 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
137 | 1145 | 1.646912 | TTCGGTTGGGTAGTGGATGA | 58.353 | 50.000 | 0.00 | 0.00 | 0.00 | 2.92 |
149 | 1157 | 1.135717 | TCATTGCTTCGCATTCGGTTG | 60.136 | 47.619 | 0.00 | 0.00 | 38.76 | 3.77 |
169 | 1177 | 1.163420 | TTTCCATGCGCGTGAACAGT | 61.163 | 50.000 | 30.68 | 0.00 | 0.00 | 3.55 |
223 | 1231 | 4.536090 | AGCTGCCCATATAGCCATAAAGTA | 59.464 | 41.667 | 0.00 | 0.00 | 40.76 | 2.24 |
227 | 1235 | 4.361783 | TCTAGCTGCCCATATAGCCATAA | 58.638 | 43.478 | 0.00 | 0.00 | 40.76 | 1.90 |
229 | 1237 | 2.837947 | TCTAGCTGCCCATATAGCCAT | 58.162 | 47.619 | 0.00 | 0.00 | 40.76 | 4.40 |
349 | 1358 | 0.391661 | GCTGCTCGAATTGGAGTCCA | 60.392 | 55.000 | 17.47 | 8.12 | 36.41 | 4.02 |
358 | 1367 | 1.639298 | GGAACAAGCGCTGCTCGAAT | 61.639 | 55.000 | 12.58 | 0.00 | 38.25 | 3.34 |
438 | 1448 | 1.006758 | TCCTAGTTGGACTCCCACGAT | 59.993 | 52.381 | 0.00 | 0.00 | 43.41 | 3.73 |
460 | 1470 | 0.250727 | TGCTACAGCCGAGCCTTTTT | 60.251 | 50.000 | 0.00 | 0.00 | 39.30 | 1.94 |
463 | 1473 | 0.970937 | TACTGCTACAGCCGAGCCTT | 60.971 | 55.000 | 0.00 | 0.00 | 39.30 | 4.35 |
508 | 1518 | 0.107017 | CACCAATCCCGAGCTTCCAT | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
509 | 1519 | 1.198094 | TCACCAATCCCGAGCTTCCA | 61.198 | 55.000 | 0.00 | 0.00 | 0.00 | 3.53 |
535 | 1545 | 3.401033 | ACGTGGTCAGATCATGTGAAA | 57.599 | 42.857 | 7.81 | 0.00 | 33.60 | 2.69 |
547 | 1557 | 1.604438 | CGATCACCTCAAACGTGGTCA | 60.604 | 52.381 | 0.00 | 0.00 | 40.69 | 4.02 |
553 | 1563 | 2.153817 | CGATATGCGATCACCTCAAACG | 59.846 | 50.000 | 0.00 | 0.00 | 44.57 | 3.60 |
555 | 1565 | 2.547855 | CCCGATATGCGATCACCTCAAA | 60.548 | 50.000 | 0.00 | 0.00 | 44.57 | 2.69 |
599 | 1609 | 3.599343 | AGCGACATTTTGTAGATGCAGA | 58.401 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
626 | 1636 | 2.094494 | CACCGCTAGTTGTGAGTCAGAT | 60.094 | 50.000 | 7.72 | 0.00 | 34.37 | 2.90 |
638 | 1648 | 0.102481 | CTACCGCATTCACCGCTAGT | 59.898 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
653 | 1663 | 2.574824 | TCCTTCAACCCTTAAGGCTACC | 59.425 | 50.000 | 16.70 | 0.00 | 41.76 | 3.18 |
654 | 1664 | 3.994931 | TCCTTCAACCCTTAAGGCTAC | 57.005 | 47.619 | 16.70 | 0.00 | 41.76 | 3.58 |
660 | 1670 | 6.134535 | TCATAGCTTTCCTTCAACCCTTAA | 57.865 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
661 | 1671 | 5.772393 | TCATAGCTTTCCTTCAACCCTTA | 57.228 | 39.130 | 0.00 | 0.00 | 0.00 | 2.69 |
784 | 2070 | 6.278363 | TCCAGTCTAAAAGCATACCGAATAC | 58.722 | 40.000 | 0.00 | 0.00 | 0.00 | 1.89 |
785 | 2071 | 6.474140 | TCCAGTCTAAAAGCATACCGAATA | 57.526 | 37.500 | 0.00 | 0.00 | 0.00 | 1.75 |
786 | 2072 | 5.353394 | TCCAGTCTAAAAGCATACCGAAT | 57.647 | 39.130 | 0.00 | 0.00 | 0.00 | 3.34 |
787 | 2073 | 4.811969 | TCCAGTCTAAAAGCATACCGAA | 57.188 | 40.909 | 0.00 | 0.00 | 0.00 | 4.30 |
788 | 2074 | 4.404394 | TGATCCAGTCTAAAAGCATACCGA | 59.596 | 41.667 | 0.00 | 0.00 | 0.00 | 4.69 |
789 | 2075 | 4.693283 | TGATCCAGTCTAAAAGCATACCG | 58.307 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
790 | 2076 | 5.471456 | CCATGATCCAGTCTAAAAGCATACC | 59.529 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
814 | 2100 | 3.891422 | TGGCCAAATCAAACATGATCC | 57.109 | 42.857 | 0.61 | 0.00 | 0.00 | 3.36 |
816 | 2102 | 3.583966 | AGGTTGGCCAAATCAAACATGAT | 59.416 | 39.130 | 22.47 | 0.00 | 34.50 | 2.45 |
817 | 2103 | 2.971330 | AGGTTGGCCAAATCAAACATGA | 59.029 | 40.909 | 22.47 | 0.00 | 34.50 | 3.07 |
818 | 2104 | 3.244146 | TGAGGTTGGCCAAATCAAACATG | 60.244 | 43.478 | 25.13 | 0.00 | 34.50 | 3.21 |
826 | 2113 | 1.560505 | GGTCATGAGGTTGGCCAAAT | 58.439 | 50.000 | 22.47 | 12.48 | 41.22 | 2.32 |
861 | 2148 | 6.951062 | TGTATTCATCAAACTCCACACAAA | 57.049 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
1077 | 2372 | 1.623542 | GGAAGGGGAGGAAGCGCTTA | 61.624 | 60.000 | 25.11 | 0.00 | 0.00 | 3.09 |
1416 | 2711 | 3.181479 | TGGGACAATTAACGAGAGATCGG | 60.181 | 47.826 | 2.46 | 0.00 | 33.70 | 4.18 |
1679 | 2987 | 1.794116 | CAAGTGCAAAATTTCAGGGCG | 59.206 | 47.619 | 0.00 | 0.00 | 0.00 | 6.13 |
1912 | 3220 | 4.067896 | AGGAGTGTTGCAGTATGAGTTTG | 58.932 | 43.478 | 0.00 | 0.00 | 39.69 | 2.93 |
1944 | 3252 | 8.385491 | TGCATTATCCTATTTCACATATCCACT | 58.615 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
1987 | 3295 | 6.764379 | AGAAGATAAGGGCTACATAAGAAGC | 58.236 | 40.000 | 0.00 | 0.00 | 38.03 | 3.86 |
2102 | 3410 | 3.621715 | GGGTTAGTAGAAAAGATGCACCG | 59.378 | 47.826 | 0.00 | 0.00 | 0.00 | 4.94 |
2183 | 3491 | 4.142249 | GCACAAGTACCACCAAGAAAAAGT | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
2303 | 3611 | 6.042781 | AGGACTTGAGACCATAAAACAGTGTA | 59.957 | 38.462 | 0.00 | 0.00 | 32.26 | 2.90 |
2422 | 3731 | 1.481871 | TCCCTTATCGTCACCTGACC | 58.518 | 55.000 | 0.00 | 0.00 | 41.86 | 4.02 |
2608 | 3917 | 5.011533 | AGCCCATTAGATAAGCTAGACACAG | 59.988 | 44.000 | 0.00 | 0.00 | 30.46 | 3.66 |
2661 | 3970 | 1.659233 | CATCCGCAGTGCCACAAAA | 59.341 | 52.632 | 10.11 | 0.00 | 0.00 | 2.44 |
2842 | 4157 | 8.557029 | GCAGTAGAACATTTGTTACTTGTAACT | 58.443 | 33.333 | 20.02 | 3.66 | 38.56 | 2.24 |
2843 | 4158 | 7.801783 | GGCAGTAGAACATTTGTTACTTGTAAC | 59.198 | 37.037 | 14.63 | 14.63 | 38.56 | 2.50 |
2985 | 4301 | 9.061435 | GTTTATTAGCCTTCTAGATCAGCAAAT | 57.939 | 33.333 | 10.66 | 3.16 | 0.00 | 2.32 |
3212 | 4528 | 6.228258 | TCTTGTTATCTCCTTGTAACGCTTT | 58.772 | 36.000 | 0.00 | 0.00 | 34.37 | 3.51 |
3222 | 4538 | 5.750352 | TTACCCGTTCTTGTTATCTCCTT | 57.250 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
3223 | 4539 | 5.750352 | TTTACCCGTTCTTGTTATCTCCT | 57.250 | 39.130 | 0.00 | 0.00 | 0.00 | 3.69 |
3224 | 4540 | 8.496707 | TTTATTTACCCGTTCTTGTTATCTCC | 57.503 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
3229 | 4545 | 9.949174 | GAACTTTTTATTTACCCGTTCTTGTTA | 57.051 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
3235 | 4551 | 8.091385 | TCTCTGAACTTTTTATTTACCCGTTC | 57.909 | 34.615 | 0.00 | 0.00 | 0.00 | 3.95 |
3237 | 4553 | 7.307573 | CGTTCTCTGAACTTTTTATTTACCCGT | 60.308 | 37.037 | 8.51 | 0.00 | 0.00 | 5.28 |
3238 | 4554 | 7.013529 | CGTTCTCTGAACTTTTTATTTACCCG | 58.986 | 38.462 | 8.51 | 0.00 | 0.00 | 5.28 |
3239 | 4555 | 7.868775 | ACGTTCTCTGAACTTTTTATTTACCC | 58.131 | 34.615 | 8.51 | 0.00 | 0.00 | 3.69 |
3240 | 4556 | 8.771766 | AGACGTTCTCTGAACTTTTTATTTACC | 58.228 | 33.333 | 8.51 | 0.00 | 0.00 | 2.85 |
3267 | 4586 | 7.760794 | CCTTGTAACACGGTTAATAGATGTACA | 59.239 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
3430 | 4749 | 3.041946 | CTGAAGCCTGGGAAGGTACTAT | 58.958 | 50.000 | 0.00 | 0.00 | 38.49 | 2.12 |
3462 | 4781 | 2.825836 | GAGTTCCCATGGCCGCAG | 60.826 | 66.667 | 6.09 | 0.00 | 0.00 | 5.18 |
3463 | 4782 | 4.424711 | GGAGTTCCCATGGCCGCA | 62.425 | 66.667 | 6.09 | 0.00 | 34.14 | 5.69 |
3506 | 4825 | 3.796504 | GCAAGAGAGCAGATAGACAGAGC | 60.797 | 52.174 | 0.00 | 0.00 | 0.00 | 4.09 |
3577 | 4896 | 1.303317 | GGAATGCGGGTGAGTTGGT | 60.303 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
3842 | 5164 | 1.701031 | TTGGACCTTGTGGCTTCGGA | 61.701 | 55.000 | 0.00 | 0.00 | 36.63 | 4.55 |
3889 | 5213 | 4.920112 | TTCGTGTGCGGGGTGTGG | 62.920 | 66.667 | 0.00 | 0.00 | 38.89 | 4.17 |
3895 | 5219 | 2.048597 | TGCTACTTCGTGTGCGGG | 60.049 | 61.111 | 0.00 | 0.00 | 38.89 | 6.13 |
3968 | 5326 | 0.179124 | TGTGCCGCCACTTGTTTTTC | 60.179 | 50.000 | 0.00 | 0.00 | 42.54 | 2.29 |
4370 | 5767 | 5.226396 | AGACTCGAAACACATCTTCTTCTG | 58.774 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
4384 | 5781 | 2.963101 | TGGGACAGAAGAAGACTCGAAA | 59.037 | 45.455 | 0.00 | 0.00 | 0.00 | 3.46 |
4406 | 5803 | 1.040646 | GATGGGATGTGTCCGCTCTA | 58.959 | 55.000 | 0.00 | 0.00 | 46.09 | 2.43 |
4551 | 5949 | 2.358125 | CCATCGCAACGACACCCA | 60.358 | 61.111 | 0.00 | 0.00 | 39.18 | 4.51 |
4578 | 5977 | 3.031736 | GGTAGCTTCTCCACTACATCCA | 58.968 | 50.000 | 0.00 | 0.00 | 40.45 | 3.41 |
4583 | 5982 | 3.429684 | GCTTCAGGTAGCTTCTCCACTAC | 60.430 | 52.174 | 0.00 | 0.00 | 38.15 | 2.73 |
4605 | 6004 | 1.267932 | CGAACGACCGCTTCTAGGTAG | 60.268 | 57.143 | 0.00 | 0.00 | 43.01 | 3.18 |
4606 | 6005 | 0.729116 | CGAACGACCGCTTCTAGGTA | 59.271 | 55.000 | 0.00 | 0.00 | 43.01 | 3.08 |
4607 | 6006 | 1.505353 | CGAACGACCGCTTCTAGGT | 59.495 | 57.895 | 0.00 | 0.00 | 46.16 | 3.08 |
4899 | 6307 | 7.609097 | TCTCAGTTCTGGCAATCTCTAATAT | 57.391 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
4903 | 6311 | 3.131933 | GCTCTCAGTTCTGGCAATCTCTA | 59.868 | 47.826 | 0.00 | 0.00 | 0.00 | 2.43 |
4926 | 6334 | 1.417890 | CCTTCTGTCAGTGGTCTGGTT | 59.582 | 52.381 | 0.00 | 0.00 | 41.59 | 3.67 |
4990 | 6398 | 0.633528 | ATGGGGAAGGGGGCCTTTAT | 60.634 | 55.000 | 0.84 | 0.00 | 44.82 | 1.40 |
4999 | 6407 | 0.106519 | AGATTGCGAATGGGGAAGGG | 60.107 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
5002 | 6410 | 1.037030 | GGCAGATTGCGAATGGGGAA | 61.037 | 55.000 | 0.00 | 0.00 | 46.21 | 3.97 |
5018 | 6426 | 4.687215 | GACTCGCTGGCTGTGGCA | 62.687 | 66.667 | 5.07 | 0.00 | 40.87 | 4.92 |
5081 | 6489 | 0.757561 | TGGATACCGCGGGATCAAGA | 60.758 | 55.000 | 42.87 | 27.34 | 0.00 | 3.02 |
5100 | 6787 | 0.903454 | CTTCCCCACGACCTACCTGT | 60.903 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
5125 | 6812 | 2.030363 | TGACCGCCTTAATTGCAAGTTG | 60.030 | 45.455 | 4.05 | 0.00 | 0.00 | 3.16 |
5127 | 6814 | 1.812571 | CTGACCGCCTTAATTGCAAGT | 59.187 | 47.619 | 4.94 | 4.58 | 0.00 | 3.16 |
5193 | 6880 | 6.293626 | GCTCAAGATTAACTTTGACAAGAGCA | 60.294 | 38.462 | 11.62 | 0.00 | 41.99 | 4.26 |
5221 | 6908 | 2.886523 | CCTCTGCTTCCAACAAATGTCA | 59.113 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
5291 | 6981 | 7.684450 | TACAGTATGCGGATGACACCATCAC | 62.684 | 48.000 | 0.00 | 0.61 | 45.42 | 3.06 |
5338 | 7028 | 1.144057 | GATAGTCCCGCACCTGGTG | 59.856 | 63.158 | 22.46 | 22.46 | 36.51 | 4.17 |
5439 | 7129 | 1.591863 | GTGCGTTAGGGCGATCCTC | 60.592 | 63.158 | 0.84 | 0.00 | 44.06 | 3.71 |
5451 | 7141 | 2.113139 | CCTTCTGTGGGGTGCGTT | 59.887 | 61.111 | 0.00 | 0.00 | 0.00 | 4.84 |
5513 | 7203 | 2.764128 | GATGGTCTCCTCGGGCCA | 60.764 | 66.667 | 4.39 | 0.00 | 35.28 | 5.36 |
5615 | 7305 | 0.111253 | AAGCTGGACTTCCACAAGGG | 59.889 | 55.000 | 0.00 | 0.00 | 42.01 | 3.95 |
5668 | 7358 | 1.883678 | TCCATGAGGCTCTCCATGAA | 58.116 | 50.000 | 16.72 | 0.00 | 33.74 | 2.57 |
5854 | 7548 | 1.625315 | CCTCATCCACAAGGTGTCTGA | 59.375 | 52.381 | 0.00 | 0.00 | 35.89 | 3.27 |
5866 | 7560 | 0.984230 | GGGATTATCGCCCTCATCCA | 59.016 | 55.000 | 0.00 | 0.00 | 42.56 | 3.41 |
5876 | 7570 | 4.574828 | CCCGCCTTAATTATGGGATTATCG | 59.425 | 45.833 | 16.82 | 11.02 | 42.77 | 2.92 |
5901 | 7595 | 0.616395 | TTGTGGGCTCCATCGACCTA | 60.616 | 55.000 | 0.00 | 0.00 | 35.28 | 3.08 |
5947 | 7641 | 5.902613 | TTCTGGAATGTCATTAAGCAAGG | 57.097 | 39.130 | 0.00 | 0.00 | 0.00 | 3.61 |
6011 | 7705 | 1.003839 | GGCATGAACCTGACGTCCA | 60.004 | 57.895 | 14.12 | 3.25 | 0.00 | 4.02 |
6012 | 7706 | 1.745489 | GGGCATGAACCTGACGTCC | 60.745 | 63.158 | 14.12 | 0.00 | 0.00 | 4.79 |
6015 | 7709 | 0.321564 | TCAAGGGCATGAACCTGACG | 60.322 | 55.000 | 9.82 | 3.37 | 38.63 | 4.35 |
6033 | 7727 | 2.191641 | GAGGTCTGGGCTGCCATC | 59.808 | 66.667 | 22.05 | 4.31 | 0.00 | 3.51 |
6039 | 7733 | 2.366570 | GAGGAGGAGGTCTGGGCT | 59.633 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
6081 | 7775 | 2.307363 | CGTTTCCGCGGCAGATAAT | 58.693 | 52.632 | 23.51 | 0.00 | 0.00 | 1.28 |
6101 | 7795 | 1.227639 | CATCTAGCCTGAGCACATGC | 58.772 | 55.000 | 3.29 | 3.29 | 43.56 | 4.06 |
6102 | 7796 | 2.481854 | GACATCTAGCCTGAGCACATG | 58.518 | 52.381 | 0.00 | 0.00 | 43.56 | 3.21 |
6108 | 7802 | 0.387202 | CCCACGACATCTAGCCTGAG | 59.613 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
6109 | 7803 | 1.676678 | GCCCACGACATCTAGCCTGA | 61.677 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
6115 | 7809 | 1.676678 | GCTCTGGCCCACGACATCTA | 61.677 | 60.000 | 0.00 | 0.00 | 0.00 | 1.98 |
6156 | 7850 | 5.746990 | GCTTCTATAAGGCCCTATTCTCA | 57.253 | 43.478 | 0.00 | 0.00 | 32.98 | 3.27 |
6168 | 7862 | 3.309388 | CCATGTCGACGGCTTCTATAAG | 58.691 | 50.000 | 11.62 | 0.00 | 35.68 | 1.73 |
6169 | 7863 | 2.035449 | CCCATGTCGACGGCTTCTATAA | 59.965 | 50.000 | 11.62 | 0.00 | 0.00 | 0.98 |
6171 | 7865 | 0.389391 | CCCATGTCGACGGCTTCTAT | 59.611 | 55.000 | 11.62 | 0.00 | 0.00 | 1.98 |
6211 | 7905 | 4.135153 | CGGTGAGACCCTCCTGCG | 62.135 | 72.222 | 0.00 | 0.00 | 33.75 | 5.18 |
6327 | 8022 | 4.082523 | TACTGGCGTCTGCAGGGC | 62.083 | 66.667 | 15.13 | 17.26 | 45.35 | 5.19 |
6345 | 8040 | 4.038162 | GTCATATATACGGATGAGGAGGCC | 59.962 | 50.000 | 0.00 | 0.00 | 32.81 | 5.19 |
6360 | 8055 | 5.962641 | TGAGGATCAGCTCATGGTCATATAT | 59.037 | 40.000 | 0.00 | 0.00 | 42.56 | 0.86 |
6363 | 8058 | 3.580039 | TGAGGATCAGCTCATGGTCATA | 58.420 | 45.455 | 0.00 | 0.00 | 42.56 | 2.15 |
6399 | 8094 | 0.627451 | TTACCTCGGAGGAGTGGCTA | 59.373 | 55.000 | 30.13 | 8.32 | 37.67 | 3.93 |
6401 | 8096 | 1.677637 | CCTTACCTCGGAGGAGTGGC | 61.678 | 65.000 | 30.13 | 0.00 | 37.67 | 5.01 |
6405 | 8100 | 2.134933 | GGGCCTTACCTCGGAGGAG | 61.135 | 68.421 | 30.13 | 17.26 | 37.67 | 3.69 |
6413 | 8108 | 1.988406 | GACTCCACGGGCCTTACCT | 60.988 | 63.158 | 0.84 | 0.00 | 39.10 | 3.08 |
6414 | 8109 | 2.582978 | GACTCCACGGGCCTTACC | 59.417 | 66.667 | 0.84 | 0.00 | 37.93 | 2.85 |
6428 | 8123 | 3.717924 | CTAGACCTCCGGGCCGACT | 62.718 | 68.421 | 30.79 | 18.98 | 35.63 | 4.18 |
6458 | 8153 | 3.173965 | TGAAAGAAATCCCTCCTCGACT | 58.826 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
6459 | 8154 | 3.611766 | TGAAAGAAATCCCTCCTCGAC | 57.388 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
6479 | 8174 | 2.125106 | GCCGGAACCTGCGAGAAT | 60.125 | 61.111 | 5.05 | 0.00 | 30.86 | 2.40 |
6480 | 8175 | 4.388499 | GGCCGGAACCTGCGAGAA | 62.388 | 66.667 | 5.05 | 0.00 | 30.86 | 2.87 |
6486 | 8181 | 1.078426 | CTACCTTGGCCGGAACCTG | 60.078 | 63.158 | 5.05 | 0.00 | 0.00 | 4.00 |
6489 | 8184 | 0.539986 | TGATCTACCTTGGCCGGAAC | 59.460 | 55.000 | 5.05 | 0.00 | 0.00 | 3.62 |
6491 | 8186 | 1.048724 | CCTGATCTACCTTGGCCGGA | 61.049 | 60.000 | 5.05 | 0.00 | 0.00 | 5.14 |
6492 | 8187 | 1.447643 | CCTGATCTACCTTGGCCGG | 59.552 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
6498 | 8193 | 4.148128 | CAGAATGTGCCTGATCTACCTT | 57.852 | 45.455 | 0.00 | 0.00 | 33.65 | 3.50 |
6529 | 8224 | 7.420214 | CCCAGGCTCCTAAATAGAGACAATTTA | 60.420 | 40.741 | 0.00 | 0.00 | 42.26 | 1.40 |
6542 | 8237 | 3.430453 | CACATTTTCCCAGGCTCCTAAA | 58.570 | 45.455 | 0.00 | 0.00 | 0.00 | 1.85 |
6582 | 8296 | 2.884639 | GTTCCTGCTGTTTGGAAGCTAA | 59.115 | 45.455 | 0.00 | 0.00 | 42.27 | 3.09 |
6810 | 8698 | 6.274436 | TGGGCATAATATTTCCCTGACATCTA | 59.726 | 38.462 | 16.36 | 0.00 | 39.49 | 1.98 |
6918 | 8835 | 5.485353 | GGTATGATGGGATATCAGTGGAAGA | 59.515 | 44.000 | 4.83 | 0.00 | 0.00 | 2.87 |
7192 | 9110 | 4.347000 | GGTTTAGGGGTACAGATATGAGCA | 59.653 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
7194 | 9112 | 5.221661 | GGTGGTTTAGGGGTACAGATATGAG | 60.222 | 48.000 | 0.00 | 0.00 | 0.00 | 2.90 |
7206 | 9124 | 4.698201 | AAACAATTTGGTGGTTTAGGGG | 57.302 | 40.909 | 0.78 | 0.00 | 33.31 | 4.79 |
7235 | 9153 | 9.962289 | TTGGAGCCCATTGGTATCTGTTGATAC | 62.962 | 44.444 | 1.20 | 7.45 | 42.40 | 2.24 |
7236 | 9154 | 4.202461 | GGAGCCCATTGGTATCTGTTGATA | 60.202 | 45.833 | 1.20 | 0.00 | 34.32 | 2.15 |
7237 | 9155 | 3.435601 | GGAGCCCATTGGTATCTGTTGAT | 60.436 | 47.826 | 1.20 | 0.00 | 36.74 | 2.57 |
7316 | 9235 | 3.683822 | GCATACTGCTTCTGGATATGAGC | 59.316 | 47.826 | 0.00 | 0.00 | 40.96 | 4.26 |
7318 | 9237 | 3.647590 | TGGCATACTGCTTCTGGATATGA | 59.352 | 43.478 | 0.00 | 0.00 | 44.28 | 2.15 |
7319 | 9238 | 4.011966 | TGGCATACTGCTTCTGGATATG | 57.988 | 45.455 | 0.00 | 0.00 | 44.28 | 1.78 |
7320 | 9239 | 4.535294 | AGATGGCATACTGCTTCTGGATAT | 59.465 | 41.667 | 0.00 | 0.00 | 44.28 | 1.63 |
7321 | 9240 | 3.906218 | AGATGGCATACTGCTTCTGGATA | 59.094 | 43.478 | 0.00 | 0.00 | 44.28 | 2.59 |
7578 | 9504 | 5.409520 | GCCTATCAACATCGATGCTGATAAA | 59.590 | 40.000 | 34.17 | 23.77 | 42.15 | 1.40 |
7580 | 9506 | 4.021192 | TGCCTATCAACATCGATGCTGATA | 60.021 | 41.667 | 33.35 | 33.35 | 40.64 | 2.15 |
7585 | 9511 | 4.692625 | ACTTATGCCTATCAACATCGATGC | 59.307 | 41.667 | 25.11 | 9.15 | 0.00 | 3.91 |
7848 | 9802 | 8.853077 | TTATTAATTCTATGATGCACCAGAGG | 57.147 | 34.615 | 2.10 | 0.00 | 0.00 | 3.69 |
7894 | 9848 | 7.796054 | TGTTTAAGCTAGATTATGAGAAGGCT | 58.204 | 34.615 | 0.44 | 0.00 | 0.00 | 4.58 |
7973 | 9927 | 4.331968 | TGGGCAAAAGTTCACTACCATAG | 58.668 | 43.478 | 0.00 | 0.00 | 0.00 | 2.23 |
8046 | 10000 | 2.621668 | GGCAAGCCTCCCTTAGAAACAT | 60.622 | 50.000 | 3.29 | 0.00 | 31.00 | 2.71 |
8279 | 10241 | 4.445385 | CCAAGTTCTTTCTCCATTTTTGCG | 59.555 | 41.667 | 0.00 | 0.00 | 0.00 | 4.85 |
8285 | 10247 | 4.401925 | CCTCACCAAGTTCTTTCTCCATT | 58.598 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
8379 | 10341 | 4.523173 | AGTACAGAAGAGACGATGTCCAAA | 59.477 | 41.667 | 0.00 | 0.00 | 32.18 | 3.28 |
8448 | 10410 | 2.393768 | AAGTGCTTCTGCGGCGATG | 61.394 | 57.895 | 12.98 | 1.33 | 43.34 | 3.84 |
8592 | 10556 | 7.419204 | TGGACTGTTTTTGGTTTATTAAGACG | 58.581 | 34.615 | 0.00 | 0.00 | 0.00 | 4.18 |
8606 | 10570 | 6.710744 | ACGAAAGATACTCATGGACTGTTTTT | 59.289 | 34.615 | 0.00 | 0.00 | 0.00 | 1.94 |
8710 | 10674 | 2.009042 | GCTTTGACGGCAGCTCTATGT | 61.009 | 52.381 | 0.00 | 0.00 | 32.87 | 2.29 |
8734 | 10698 | 0.684535 | TGAGACCATGTCCGCTTTCA | 59.315 | 50.000 | 0.00 | 0.00 | 32.18 | 2.69 |
8762 | 10726 | 3.309296 | TGGCTTCTTCGATCCTCCTAAT | 58.691 | 45.455 | 0.00 | 0.00 | 0.00 | 1.73 |
8806 | 10770 | 9.261180 | CAGGAATACGTGTAAGATATCAACATT | 57.739 | 33.333 | 12.44 | 4.94 | 0.00 | 2.71 |
8830 | 10794 | 5.657474 | TCAGTAAGTAAACCTTATCGGCAG | 58.343 | 41.667 | 0.00 | 0.00 | 37.93 | 4.85 |
8925 | 10890 | 3.426568 | GCGTGCAGTCCCAGCTTC | 61.427 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
8935 | 10900 | 1.225936 | CATTGAAGAGCGCGTGCAG | 60.226 | 57.895 | 24.79 | 0.00 | 46.23 | 4.41 |
8965 | 10930 | 6.771267 | TGGATCGACGAGCCATACTATATTAT | 59.229 | 38.462 | 29.80 | 0.00 | 43.58 | 1.28 |
8966 | 10931 | 6.117488 | TGGATCGACGAGCCATACTATATTA | 58.883 | 40.000 | 29.80 | 3.99 | 43.58 | 0.98 |
8967 | 10932 | 4.948004 | TGGATCGACGAGCCATACTATATT | 59.052 | 41.667 | 29.80 | 0.00 | 43.58 | 1.28 |
8977 | 10942 | 1.143305 | CATCAATGGATCGACGAGCC | 58.857 | 55.000 | 24.87 | 24.87 | 38.78 | 4.70 |
8978 | 10943 | 1.524355 | CACATCAATGGATCGACGAGC | 59.476 | 52.381 | 4.11 | 4.11 | 0.00 | 5.03 |
9000 | 10965 | 7.270832 | TCAGATGATCCTTTTCCTCCTTAAA | 57.729 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
9002 | 10967 | 6.689946 | GCATCAGATGATCCTTTTCCTCCTTA | 60.690 | 42.308 | 15.12 | 0.00 | 31.21 | 2.69 |
9200 | 11165 | 8.716674 | ATTTAGAAACGGAGGGAGTATATGTA | 57.283 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
9201 | 11166 | 7.613551 | ATTTAGAAACGGAGGGAGTATATGT | 57.386 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
9204 | 11169 | 9.991906 | CAAATATTTAGAAACGGAGGGAGTATA | 57.008 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
9205 | 11170 | 8.491958 | ACAAATATTTAGAAACGGAGGGAGTAT | 58.508 | 33.333 | 0.00 | 0.00 | 0.00 | 2.12 |
9206 | 11171 | 7.854337 | ACAAATATTTAGAAACGGAGGGAGTA | 58.146 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
9207 | 11172 | 6.718294 | ACAAATATTTAGAAACGGAGGGAGT | 58.282 | 36.000 | 0.00 | 0.00 | 0.00 | 3.85 |
9208 | 11173 | 7.048512 | AGACAAATATTTAGAAACGGAGGGAG | 58.951 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
9209 | 11174 | 6.954232 | AGACAAATATTTAGAAACGGAGGGA | 58.046 | 36.000 | 0.00 | 0.00 | 0.00 | 4.20 |
9210 | 11175 | 7.625828 | AAGACAAATATTTAGAAACGGAGGG | 57.374 | 36.000 | 0.00 | 0.00 | 0.00 | 4.30 |
9211 | 11176 | 8.947115 | AGAAAGACAAATATTTAGAAACGGAGG | 58.053 | 33.333 | 0.00 | 0.00 | 0.00 | 4.30 |
9227 | 11192 | 9.396022 | ACTTGTTGAAATCTCTAGAAAGACAAA | 57.604 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
9228 | 11193 | 8.830580 | CACTTGTTGAAATCTCTAGAAAGACAA | 58.169 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
9229 | 11194 | 8.204160 | TCACTTGTTGAAATCTCTAGAAAGACA | 58.796 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
9230 | 11195 | 8.491950 | GTCACTTGTTGAAATCTCTAGAAAGAC | 58.508 | 37.037 | 0.00 | 0.00 | 35.39 | 3.01 |
9231 | 11196 | 8.424918 | AGTCACTTGTTGAAATCTCTAGAAAGA | 58.575 | 33.333 | 0.00 | 0.00 | 35.39 | 2.52 |
9232 | 11197 | 8.600449 | AGTCACTTGTTGAAATCTCTAGAAAG | 57.400 | 34.615 | 0.00 | 0.00 | 35.39 | 2.62 |
9233 | 11198 | 9.477484 | GTAGTCACTTGTTGAAATCTCTAGAAA | 57.523 | 33.333 | 0.00 | 0.00 | 35.39 | 2.52 |
9234 | 11199 | 8.638873 | TGTAGTCACTTGTTGAAATCTCTAGAA | 58.361 | 33.333 | 0.00 | 0.00 | 35.39 | 2.10 |
9235 | 11200 | 8.178313 | TGTAGTCACTTGTTGAAATCTCTAGA | 57.822 | 34.615 | 0.00 | 0.00 | 35.39 | 2.43 |
9236 | 11201 | 8.994429 | ATGTAGTCACTTGTTGAAATCTCTAG | 57.006 | 34.615 | 0.00 | 0.00 | 35.39 | 2.43 |
9237 | 11202 | 9.856488 | GTATGTAGTCACTTGTTGAAATCTCTA | 57.144 | 33.333 | 0.00 | 0.00 | 35.39 | 2.43 |
9238 | 11203 | 7.542477 | CGTATGTAGTCACTTGTTGAAATCTCT | 59.458 | 37.037 | 0.00 | 0.00 | 35.39 | 3.10 |
9239 | 11204 | 7.201444 | CCGTATGTAGTCACTTGTTGAAATCTC | 60.201 | 40.741 | 0.00 | 0.00 | 35.39 | 2.75 |
9240 | 11205 | 6.590292 | CCGTATGTAGTCACTTGTTGAAATCT | 59.410 | 38.462 | 0.00 | 0.00 | 35.39 | 2.40 |
9241 | 11206 | 6.588756 | TCCGTATGTAGTCACTTGTTGAAATC | 59.411 | 38.462 | 0.00 | 0.00 | 35.39 | 2.17 |
9242 | 11207 | 6.460781 | TCCGTATGTAGTCACTTGTTGAAAT | 58.539 | 36.000 | 0.00 | 0.00 | 35.39 | 2.17 |
9243 | 11208 | 5.845103 | TCCGTATGTAGTCACTTGTTGAAA | 58.155 | 37.500 | 0.00 | 0.00 | 35.39 | 2.69 |
9244 | 11209 | 5.456548 | TCCGTATGTAGTCACTTGTTGAA | 57.543 | 39.130 | 0.00 | 0.00 | 35.39 | 2.69 |
9245 | 11210 | 4.617530 | GCTCCGTATGTAGTCACTTGTTGA | 60.618 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
9246 | 11211 | 3.612860 | GCTCCGTATGTAGTCACTTGTTG | 59.387 | 47.826 | 0.00 | 0.00 | 0.00 | 3.33 |
9247 | 11212 | 3.257375 | TGCTCCGTATGTAGTCACTTGTT | 59.743 | 43.478 | 0.00 | 0.00 | 0.00 | 2.83 |
9248 | 11213 | 2.823747 | TGCTCCGTATGTAGTCACTTGT | 59.176 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
9249 | 11214 | 3.503827 | TGCTCCGTATGTAGTCACTTG | 57.496 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
9250 | 11215 | 4.530710 | TTTGCTCCGTATGTAGTCACTT | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
9251 | 11216 | 4.530710 | TTTTGCTCCGTATGTAGTCACT | 57.469 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
9252 | 11217 | 4.868171 | TCATTTTGCTCCGTATGTAGTCAC | 59.132 | 41.667 | 0.00 | 0.00 | 0.00 | 3.67 |
9253 | 11218 | 5.079689 | TCATTTTGCTCCGTATGTAGTCA | 57.920 | 39.130 | 0.00 | 0.00 | 0.00 | 3.41 |
9254 | 11219 | 5.005779 | CACTCATTTTGCTCCGTATGTAGTC | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
9255 | 11220 | 4.870426 | CACTCATTTTGCTCCGTATGTAGT | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.73 |
9256 | 11221 | 4.870426 | ACACTCATTTTGCTCCGTATGTAG | 59.130 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
9257 | 11222 | 4.827692 | ACACTCATTTTGCTCCGTATGTA | 58.172 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
9258 | 11223 | 3.674997 | ACACTCATTTTGCTCCGTATGT | 58.325 | 40.909 | 0.00 | 0.00 | 0.00 | 2.29 |
9259 | 11224 | 5.755375 | AGATACACTCATTTTGCTCCGTATG | 59.245 | 40.000 | 0.00 | 0.00 | 0.00 | 2.39 |
9260 | 11225 | 5.918608 | AGATACACTCATTTTGCTCCGTAT | 58.081 | 37.500 | 0.00 | 0.00 | 0.00 | 3.06 |
9261 | 11226 | 5.339008 | AGATACACTCATTTTGCTCCGTA | 57.661 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
9262 | 11227 | 4.207891 | AGATACACTCATTTTGCTCCGT | 57.792 | 40.909 | 0.00 | 0.00 | 0.00 | 4.69 |
9263 | 11228 | 5.109210 | TGTAGATACACTCATTTTGCTCCG | 58.891 | 41.667 | 0.00 | 0.00 | 0.00 | 4.63 |
9297 | 11262 | 9.511272 | AGTACAATATACGGATGTATGTAGACA | 57.489 | 33.333 | 0.00 | 0.00 | 41.37 | 3.41 |
9298 | 11263 | 9.985318 | GAGTACAATATACGGATGTATGTAGAC | 57.015 | 37.037 | 0.00 | 0.00 | 41.37 | 2.59 |
9299 | 11264 | 9.955102 | AGAGTACAATATACGGATGTATGTAGA | 57.045 | 33.333 | 0.00 | 0.00 | 41.37 | 2.59 |
9300 | 11265 | 9.989869 | CAGAGTACAATATACGGATGTATGTAG | 57.010 | 37.037 | 0.00 | 0.00 | 41.37 | 2.74 |
9301 | 11266 | 9.511272 | ACAGAGTACAATATACGGATGTATGTA | 57.489 | 33.333 | 0.00 | 0.00 | 41.37 | 2.29 |
9302 | 11267 | 8.405418 | ACAGAGTACAATATACGGATGTATGT | 57.595 | 34.615 | 0.00 | 0.00 | 41.37 | 2.29 |
9303 | 11268 | 9.692749 | AAACAGAGTACAATATACGGATGTATG | 57.307 | 33.333 | 0.00 | 0.00 | 41.37 | 2.39 |
9304 | 11269 | 9.692749 | CAAACAGAGTACAATATACGGATGTAT | 57.307 | 33.333 | 0.00 | 0.00 | 43.62 | 2.29 |
9305 | 11270 | 8.905850 | TCAAACAGAGTACAATATACGGATGTA | 58.094 | 33.333 | 0.00 | 0.00 | 34.45 | 2.29 |
9306 | 11271 | 7.778083 | TCAAACAGAGTACAATATACGGATGT | 58.222 | 34.615 | 0.00 | 0.00 | 0.00 | 3.06 |
9307 | 11272 | 8.642908 | TTCAAACAGAGTACAATATACGGATG | 57.357 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
9308 | 11273 | 9.832445 | ATTTCAAACAGAGTACAATATACGGAT | 57.168 | 29.630 | 0.00 | 0.00 | 0.00 | 4.18 |
9309 | 11274 | 9.093970 | CATTTCAAACAGAGTACAATATACGGA | 57.906 | 33.333 | 0.00 | 0.00 | 0.00 | 4.69 |
9310 | 11275 | 8.879759 | ACATTTCAAACAGAGTACAATATACGG | 58.120 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
9311 | 11276 | 9.901724 | GACATTTCAAACAGAGTACAATATACG | 57.098 | 33.333 | 0.00 | 0.00 | 0.00 | 3.06 |
9316 | 11281 | 9.778741 | TTCTAGACATTTCAAACAGAGTACAAT | 57.221 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
9317 | 11282 | 9.607988 | TTTCTAGACATTTCAAACAGAGTACAA | 57.392 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
9318 | 11283 | 9.607988 | TTTTCTAGACATTTCAAACAGAGTACA | 57.392 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
9321 | 11286 | 8.956426 | TGTTTTTCTAGACATTTCAAACAGAGT | 58.044 | 29.630 | 0.00 | 0.00 | 31.00 | 3.24 |
9322 | 11287 | 9.787532 | TTGTTTTTCTAGACATTTCAAACAGAG | 57.212 | 29.630 | 0.00 | 0.00 | 34.92 | 3.35 |
9339 | 11304 | 8.520351 | CCTCCGTTCCTAAATATTTGTTTTTCT | 58.480 | 33.333 | 11.05 | 0.00 | 0.00 | 2.52 |
9340 | 11305 | 7.758076 | CCCTCCGTTCCTAAATATTTGTTTTTC | 59.242 | 37.037 | 11.05 | 0.00 | 0.00 | 2.29 |
9341 | 11306 | 7.452189 | TCCCTCCGTTCCTAAATATTTGTTTTT | 59.548 | 33.333 | 11.05 | 0.00 | 0.00 | 1.94 |
9342 | 11307 | 6.949463 | TCCCTCCGTTCCTAAATATTTGTTTT | 59.051 | 34.615 | 11.05 | 0.00 | 0.00 | 2.43 |
9343 | 11308 | 6.486941 | TCCCTCCGTTCCTAAATATTTGTTT | 58.513 | 36.000 | 11.05 | 0.00 | 0.00 | 2.83 |
9344 | 11309 | 6.069705 | TCCCTCCGTTCCTAAATATTTGTT | 57.930 | 37.500 | 11.05 | 0.00 | 0.00 | 2.83 |
9345 | 11310 | 5.191124 | ACTCCCTCCGTTCCTAAATATTTGT | 59.809 | 40.000 | 11.05 | 0.00 | 0.00 | 2.83 |
9346 | 11311 | 5.681639 | ACTCCCTCCGTTCCTAAATATTTG | 58.318 | 41.667 | 11.05 | 1.40 | 0.00 | 2.32 |
9347 | 11312 | 5.970501 | ACTCCCTCCGTTCCTAAATATTT | 57.029 | 39.130 | 5.89 | 5.89 | 0.00 | 1.40 |
9348 | 11313 | 5.011840 | GCTACTCCCTCCGTTCCTAAATATT | 59.988 | 44.000 | 0.00 | 0.00 | 0.00 | 1.28 |
9349 | 11314 | 4.527427 | GCTACTCCCTCCGTTCCTAAATAT | 59.473 | 45.833 | 0.00 | 0.00 | 0.00 | 1.28 |
9350 | 11315 | 3.893813 | GCTACTCCCTCCGTTCCTAAATA | 59.106 | 47.826 | 0.00 | 0.00 | 0.00 | 1.40 |
9351 | 11316 | 2.699321 | GCTACTCCCTCCGTTCCTAAAT | 59.301 | 50.000 | 0.00 | 0.00 | 0.00 | 1.40 |
9352 | 11317 | 2.105766 | GCTACTCCCTCCGTTCCTAAA | 58.894 | 52.381 | 0.00 | 0.00 | 0.00 | 1.85 |
9353 | 11318 | 1.287146 | AGCTACTCCCTCCGTTCCTAA | 59.713 | 52.381 | 0.00 | 0.00 | 0.00 | 2.69 |
9354 | 11319 | 0.924823 | AGCTACTCCCTCCGTTCCTA | 59.075 | 55.000 | 0.00 | 0.00 | 0.00 | 2.94 |
9355 | 11320 | 0.041386 | AAGCTACTCCCTCCGTTCCT | 59.959 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
9356 | 11321 | 0.903236 | AAAGCTACTCCCTCCGTTCC | 59.097 | 55.000 | 0.00 | 0.00 | 0.00 | 3.62 |
9357 | 11322 | 2.742589 | CAAAAAGCTACTCCCTCCGTTC | 59.257 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
9358 | 11323 | 2.105993 | ACAAAAAGCTACTCCCTCCGTT | 59.894 | 45.455 | 0.00 | 0.00 | 0.00 | 4.44 |
9359 | 11324 | 1.697982 | ACAAAAAGCTACTCCCTCCGT | 59.302 | 47.619 | 0.00 | 0.00 | 0.00 | 4.69 |
9360 | 11325 | 2.474410 | ACAAAAAGCTACTCCCTCCG | 57.526 | 50.000 | 0.00 | 0.00 | 0.00 | 4.63 |
9361 | 11326 | 4.142038 | TGAAACAAAAAGCTACTCCCTCC | 58.858 | 43.478 | 0.00 | 0.00 | 0.00 | 4.30 |
9362 | 11327 | 4.822350 | ACTGAAACAAAAAGCTACTCCCTC | 59.178 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
9363 | 11328 | 4.580580 | CACTGAAACAAAAAGCTACTCCCT | 59.419 | 41.667 | 0.00 | 0.00 | 0.00 | 4.20 |
9364 | 11329 | 4.793028 | GCACTGAAACAAAAAGCTACTCCC | 60.793 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
9365 | 11330 | 4.036852 | AGCACTGAAACAAAAAGCTACTCC | 59.963 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
9366 | 11331 | 5.175090 | AGCACTGAAACAAAAAGCTACTC | 57.825 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
9367 | 11332 | 5.582689 | AAGCACTGAAACAAAAAGCTACT | 57.417 | 34.783 | 0.00 | 0.00 | 0.00 | 2.57 |
9368 | 11333 | 6.310224 | TCAAAAGCACTGAAACAAAAAGCTAC | 59.690 | 34.615 | 0.00 | 0.00 | 0.00 | 3.58 |
9464 | 11429 | 2.760650 | TGTGAGTTCTGCATATCCGAGT | 59.239 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
9512 | 11477 | 8.188139 | TCATCCACTTGAAAGTTCTTGTAAAAC | 58.812 | 33.333 | 0.00 | 0.00 | 37.08 | 2.43 |
9524 | 11489 | 5.291858 | TCGATCGATTTCATCCACTTGAAAG | 59.708 | 40.000 | 15.15 | 0.00 | 45.83 | 2.62 |
9539 | 11504 | 2.370349 | ACTGAGACCACTCGATCGATT | 58.630 | 47.619 | 19.78 | 10.67 | 45.25 | 3.34 |
9572 | 11537 | 3.785521 | CGTTCAATCCATAAACATGTGCG | 59.214 | 43.478 | 0.00 | 0.00 | 0.00 | 5.34 |
9596 | 11561 | 3.368427 | CCACCGTCTCTCTTGCTTGAATA | 60.368 | 47.826 | 0.00 | 0.00 | 0.00 | 1.75 |
9606 | 11571 | 1.339151 | GGCAAATTCCACCGTCTCTCT | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 3.10 |
9611 | 11576 | 1.212751 | GCTGGCAAATTCCACCGTC | 59.787 | 57.895 | 0.00 | 0.00 | 31.74 | 4.79 |
9613 | 11578 | 2.179018 | CGCTGGCAAATTCCACCG | 59.821 | 61.111 | 0.00 | 0.00 | 31.74 | 4.94 |
9654 | 11619 | 1.001641 | AGTGGCATGTGGGCTTCTC | 60.002 | 57.895 | 0.00 | 0.00 | 43.83 | 2.87 |
9687 | 11653 | 0.612732 | CCCTCTGTGGTACCGTGGTA | 60.613 | 60.000 | 7.57 | 0.00 | 0.00 | 3.25 |
9688 | 11654 | 1.911766 | CCCTCTGTGGTACCGTGGT | 60.912 | 63.158 | 7.57 | 0.00 | 0.00 | 4.16 |
9689 | 11655 | 0.612732 | TACCCTCTGTGGTACCGTGG | 60.613 | 60.000 | 7.57 | 3.51 | 39.91 | 4.94 |
9690 | 11656 | 1.407979 | GATACCCTCTGTGGTACCGTG | 59.592 | 57.143 | 7.57 | 0.00 | 43.45 | 4.94 |
9691 | 11657 | 1.772836 | GATACCCTCTGTGGTACCGT | 58.227 | 55.000 | 7.57 | 0.00 | 43.45 | 4.83 |
9692 | 11658 | 0.666913 | CGATACCCTCTGTGGTACCG | 59.333 | 60.000 | 7.57 | 0.00 | 41.28 | 4.02 |
9693 | 11659 | 1.038280 | CCGATACCCTCTGTGGTACC | 58.962 | 60.000 | 4.43 | 4.43 | 43.45 | 3.34 |
9711 | 11677 | 1.690219 | ATGGAGATCACGAGGCCACC | 61.690 | 60.000 | 5.01 | 0.00 | 0.00 | 4.61 |
9763 | 11729 | 0.102481 | ACGCACGGGCATTCTACTAG | 59.898 | 55.000 | 11.77 | 0.00 | 41.24 | 2.57 |
9764 | 11730 | 0.533491 | AACGCACGGGCATTCTACTA | 59.467 | 50.000 | 11.77 | 0.00 | 41.24 | 1.82 |
9765 | 11731 | 1.019278 | CAACGCACGGGCATTCTACT | 61.019 | 55.000 | 11.77 | 0.00 | 41.24 | 2.57 |
9766 | 11732 | 1.423845 | CAACGCACGGGCATTCTAC | 59.576 | 57.895 | 11.77 | 0.00 | 41.24 | 2.59 |
9767 | 11733 | 2.395360 | GCAACGCACGGGCATTCTA | 61.395 | 57.895 | 11.77 | 0.00 | 41.24 | 2.10 |
9768 | 11734 | 3.737172 | GCAACGCACGGGCATTCT | 61.737 | 61.111 | 11.77 | 0.00 | 41.24 | 2.40 |
9769 | 11735 | 4.776647 | GGCAACGCACGGGCATTC | 62.777 | 66.667 | 11.77 | 0.00 | 41.24 | 2.67 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.