Multiple sequence alignment - TraesCS6A01G165400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G165400 chr6A 100.000 6760 0 0 1 6760 166499710 166506469 0.000000e+00 12484.0
1 TraesCS6A01G165400 chr6D 96.789 2803 80 6 2958 5759 129156507 129153714 0.000000e+00 4669.0
2 TraesCS6A01G165400 chr6D 93.863 2102 63 28 875 2960 129158659 129156608 0.000000e+00 3107.0
3 TraesCS6A01G165400 chr6D 92.651 1007 43 12 5756 6760 129153647 129152670 0.000000e+00 1421.0
4 TraesCS6A01G165400 chr6D 88.942 208 8 7 657 858 129158921 129158723 6.770000e-60 243.0
5 TraesCS6A01G165400 chr6D 89.677 155 10 1 201 349 129159081 129158927 6.920000e-45 193.0
6 TraesCS6A01G165400 chr6B 91.778 2092 113 27 858 2902 227276851 227274772 0.000000e+00 2856.0
7 TraesCS6A01G165400 chr6B 92.879 1320 75 11 2954 4270 227274429 227273126 0.000000e+00 1899.0
8 TraesCS6A01G165400 chr6B 92.757 925 58 7 5756 6676 227271243 227270324 0.000000e+00 1328.0
9 TraesCS6A01G165400 chr6B 95.828 719 25 3 5046 5759 227272028 227271310 0.000000e+00 1157.0
10 TraesCS6A01G165400 chr6B 91.553 734 47 7 4274 5005 227272746 227272026 0.000000e+00 998.0
11 TraesCS6A01G165400 chr6B 97.015 67 2 0 792 858 227276966 227276900 5.540000e-21 113.0
12 TraesCS6A01G165400 chr7D 92.742 620 35 5 4090 4709 563444002 563444611 0.000000e+00 887.0
13 TraesCS6A01G165400 chr7D 76.923 234 40 8 2049 2270 512277152 512277383 3.310000e-23 121.0
14 TraesCS6A01G165400 chr1A 91.156 294 23 3 346 636 530585534 530585827 4.910000e-106 396.0
15 TraesCS6A01G165400 chr1A 84.434 212 21 7 2 202 397883967 397884177 1.490000e-46 198.0
16 TraesCS6A01G165400 chr1A 78.390 236 25 13 2 214 463810010 463809778 5.500000e-26 130.0
17 TraesCS6A01G165400 chr2A 90.722 291 24 2 347 636 730645357 730645645 1.060000e-102 385.0
18 TraesCS6A01G165400 chr2A 87.459 303 28 4 343 636 33560000 33559699 2.330000e-89 340.0
19 TraesCS6A01G165400 chr7A 90.345 290 25 2 347 635 48583212 48582925 1.780000e-100 377.0
20 TraesCS6A01G165400 chr7A 89.431 246 23 3 393 636 729564694 729564938 2.370000e-79 307.0
21 TraesCS6A01G165400 chr7A 84.434 212 21 5 2 202 611765789 611765579 1.490000e-46 198.0
22 TraesCS6A01G165400 chr7A 76.957 230 40 7 2049 2267 585061831 585062058 1.190000e-22 119.0
23 TraesCS6A01G165400 chr5D 89.041 292 27 4 349 636 302870925 302870635 2.320000e-94 357.0
24 TraesCS6A01G165400 chr5D 84.977 213 20 6 2 203 25646642 25646431 8.890000e-49 206.0
25 TraesCS6A01G165400 chr5D 78.632 234 26 8 2 211 245054399 245054632 4.250000e-27 134.0
26 TraesCS6A01G165400 chr5A 88.599 307 18 2 347 636 583619294 583618988 2.320000e-94 357.0
27 TraesCS6A01G165400 chr5A 88.475 295 26 7 347 636 612922505 612922214 3.880000e-92 350.0
28 TraesCS6A01G165400 chr5A 84.906 212 20 5 2 202 679786221 679786011 3.200000e-48 204.0
29 TraesCS6A01G165400 chr3A 88.065 310 17 7 345 636 45864845 45864538 3.880000e-92 350.0
30 TraesCS6A01G165400 chr3A 80.973 226 29 7 2 215 215352123 215352346 4.190000e-37 167.0
31 TraesCS6A01G165400 chr3A 83.598 189 13 5 341 512 170531292 170531105 1.950000e-35 161.0
32 TraesCS6A01G165400 chr3A 93.333 90 6 0 349 438 625561552 625561463 4.250000e-27 134.0
33 TraesCS6A01G165400 chr4A 89.167 240 19 3 403 636 593832854 593832616 6.630000e-75 292.0
34 TraesCS6A01G165400 chr4A 88.750 240 24 3 399 636 189671784 189672022 2.380000e-74 291.0
35 TraesCS6A01G165400 chr4A 84.834 211 17 10 2 203 400956167 400956371 1.490000e-46 198.0
36 TraesCS6A01G165400 chr2D 85.782 211 19 6 2 202 584627008 584627217 5.310000e-51 213.0
37 TraesCS6A01G165400 chr1D 85.167 209 21 6 2 202 313959270 313959064 8.890000e-49 206.0
38 TraesCS6A01G165400 chr1D 84.689 209 22 6 2 202 145252997 145253203 4.130000e-47 200.0
39 TraesCS6A01G165400 chr3D 84.259 216 22 6 2 206 590039624 590039410 4.130000e-47 200.0
40 TraesCS6A01G165400 chr3D 86.000 100 12 2 122 219 575304349 575304448 9.270000e-19 106.0
41 TraesCS6A01G165400 chr7B 76.106 226 41 7 2049 2263 544134896 544135119 9.270000e-19 106.0
42 TraesCS6A01G165400 chr4B 100.000 30 0 0 4146 4175 140925206 140925235 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G165400 chr6A 166499710 166506469 6759 False 12484.000000 12484 100.0000 1 6760 1 chr6A.!!$F1 6759
1 TraesCS6A01G165400 chr6D 129152670 129159081 6411 True 1926.600000 4669 92.3844 201 6760 5 chr6D.!!$R1 6559
2 TraesCS6A01G165400 chr6B 227270324 227276966 6642 True 1391.833333 2856 93.6350 792 6676 6 chr6B.!!$R1 5884
3 TraesCS6A01G165400 chr7D 563444002 563444611 609 False 887.000000 887 92.7420 4090 4709 1 chr7D.!!$F2 619


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
768 780 0.179124 GAGCAGTGGAGTTAGCTCGG 60.179 60.000 0.00 0.0 43.27 4.63 F
1183 1264 0.035458 CCACTCACCCACCTTCTGTC 59.965 60.000 0.00 0.0 0.00 3.51 F
1325 1437 0.111639 ATTTATTATGCGCCCGGGGT 59.888 50.000 25.28 0.0 0.00 4.95 F
2571 2699 0.534412 CGCTCAATGAGGAGACTGGT 59.466 55.000 12.66 0.0 44.43 4.00 F
2783 2915 0.590195 GTCTGCTTGCAGTTCAGGTG 59.410 55.000 20.20 0.0 0.00 4.00 F
2808 2940 1.133976 CACTTGATTCCCTAGCCCTGG 60.134 57.143 0.00 0.0 0.00 4.45 F
4669 5475 1.176527 GCATGCAAAGTTAGCCTCCA 58.823 50.000 14.21 0.0 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 2500 1.782569 CACACGCAGCAAGACAATTTG 59.217 47.619 0.00 0.00 0.00 2.32 R
2783 2915 3.181464 GGGCTAGGGAATCAAGTGAGTAC 60.181 52.174 0.00 0.00 0.00 2.73 R
3289 3715 5.412594 TCTGACCTGCTAACTTTTATGCTTG 59.587 40.000 0.00 0.00 0.00 4.01 R
4000 4429 1.598882 TACCGCTTGCATTTGACACA 58.401 45.000 0.00 0.00 0.00 3.72 R
4669 5475 4.819769 ACCATTTGTCTGCGCAAAAATAT 58.180 34.783 13.05 7.16 41.03 1.28 R
4825 5631 2.227865 GCTTCCACAAAATTGACGGCTA 59.772 45.455 0.00 0.00 0.00 3.93 R
6371 7254 0.399233 GGTCAGGCCCCTCTAGACAT 60.399 60.000 0.00 0.00 0.00 3.06 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.726729 TGCATTAAATCATTGCATGCAAG 57.273 34.783 34.15 25.40 40.64 4.01
24 25 5.179533 TGCATTAAATCATTGCATGCAAGT 58.820 33.333 34.15 21.32 40.64 3.16
25 26 6.338937 TGCATTAAATCATTGCATGCAAGTA 58.661 32.000 34.15 25.25 40.64 2.24
26 27 6.987404 TGCATTAAATCATTGCATGCAAGTAT 59.013 30.769 34.15 26.18 40.64 2.12
27 28 7.496263 TGCATTAAATCATTGCATGCAAGTATT 59.504 29.630 34.15 29.40 40.64 1.89
28 29 8.980610 GCATTAAATCATTGCATGCAAGTATTA 58.019 29.630 34.15 25.22 39.47 0.98
32 33 8.867112 AAATCATTGCATGCAAGTATTAAGAG 57.133 30.769 34.15 16.39 39.47 2.85
33 34 6.381481 TCATTGCATGCAAGTATTAAGAGG 57.619 37.500 34.15 13.25 39.47 3.69
34 35 6.121590 TCATTGCATGCAAGTATTAAGAGGA 58.878 36.000 34.15 15.32 39.47 3.71
35 36 6.602803 TCATTGCATGCAAGTATTAAGAGGAA 59.397 34.615 34.15 10.19 39.47 3.36
36 37 6.832520 TTGCATGCAAGTATTAAGAGGAAA 57.167 33.333 28.80 0.80 0.00 3.13
37 38 7.408756 TTGCATGCAAGTATTAAGAGGAAAT 57.591 32.000 28.80 0.00 0.00 2.17
38 39 7.408756 TGCATGCAAGTATTAAGAGGAAATT 57.591 32.000 20.30 0.00 0.00 1.82
39 40 7.259882 TGCATGCAAGTATTAAGAGGAAATTG 58.740 34.615 20.30 0.00 0.00 2.32
40 41 7.122501 TGCATGCAAGTATTAAGAGGAAATTGA 59.877 33.333 20.30 0.00 0.00 2.57
41 42 7.433425 GCATGCAAGTATTAAGAGGAAATTGAC 59.567 37.037 14.21 0.00 0.00 3.18
42 43 7.391148 TGCAAGTATTAAGAGGAAATTGACC 57.609 36.000 0.00 0.00 0.00 4.02
43 44 7.175104 TGCAAGTATTAAGAGGAAATTGACCT 58.825 34.615 4.41 4.41 40.80 3.85
44 45 8.325787 TGCAAGTATTAAGAGGAAATTGACCTA 58.674 33.333 4.70 0.00 37.93 3.08
45 46 9.343539 GCAAGTATTAAGAGGAAATTGACCTAT 57.656 33.333 4.70 0.00 37.93 2.57
48 49 9.343539 AGTATTAAGAGGAAATTGACCTATTGC 57.656 33.333 16.83 8.33 38.99 3.56
49 50 9.120538 GTATTAAGAGGAAATTGACCTATTGCA 57.879 33.333 16.83 8.01 38.99 4.08
50 51 8.773033 ATTAAGAGGAAATTGACCTATTGCAT 57.227 30.769 16.83 9.37 38.99 3.96
51 52 6.461110 AAGAGGAAATTGACCTATTGCATG 57.539 37.500 9.89 0.00 37.53 4.06
52 53 4.340381 AGAGGAAATTGACCTATTGCATGC 59.660 41.667 11.82 11.82 37.93 4.06
53 54 4.025360 AGGAAATTGACCTATTGCATGCA 58.975 39.130 18.46 18.46 35.84 3.96
54 55 4.467082 AGGAAATTGACCTATTGCATGCAA 59.533 37.500 33.57 33.57 40.47 4.08
55 56 4.807304 GGAAATTGACCTATTGCATGCAAG 59.193 41.667 34.15 24.16 39.47 4.01
56 57 5.410355 AAATTGACCTATTGCATGCAAGT 57.590 34.783 34.15 26.95 39.47 3.16
57 58 6.405731 GGAAATTGACCTATTGCATGCAAGTA 60.406 38.462 34.15 24.04 39.47 2.24
58 59 6.720112 AATTGACCTATTGCATGCAAGTAT 57.280 33.333 34.15 22.13 39.47 2.12
59 60 7.822161 AATTGACCTATTGCATGCAAGTATA 57.178 32.000 34.15 22.06 39.47 1.47
60 61 7.822161 ATTGACCTATTGCATGCAAGTATAA 57.178 32.000 34.15 23.43 39.47 0.98
61 62 7.637631 TTGACCTATTGCATGCAAGTATAAA 57.362 32.000 34.15 21.45 39.47 1.40
62 63 7.263100 TGACCTATTGCATGCAAGTATAAAG 57.737 36.000 34.15 22.48 39.47 1.85
63 64 6.828273 TGACCTATTGCATGCAAGTATAAAGT 59.172 34.615 34.15 23.33 39.47 2.66
64 65 7.031226 ACCTATTGCATGCAAGTATAAAGTG 57.969 36.000 34.15 17.84 39.47 3.16
65 66 5.916883 CCTATTGCATGCAAGTATAAAGTGC 59.083 40.000 34.15 0.00 39.47 4.40
73 74 6.825944 TGCAAGTATAAAGTGCATTGGTAA 57.174 33.333 0.00 0.00 43.09 2.85
74 75 7.220741 TGCAAGTATAAAGTGCATTGGTAAA 57.779 32.000 0.00 0.00 43.09 2.01
75 76 7.087639 TGCAAGTATAAAGTGCATTGGTAAAC 58.912 34.615 0.00 0.00 43.09 2.01
76 77 7.087639 GCAAGTATAAAGTGCATTGGTAAACA 58.912 34.615 0.00 0.00 38.19 2.83
77 78 7.759433 GCAAGTATAAAGTGCATTGGTAAACAT 59.241 33.333 0.00 0.00 38.19 2.71
78 79 9.638239 CAAGTATAAAGTGCATTGGTAAACATT 57.362 29.630 0.00 0.00 0.00 2.71
112 113 9.899226 AACAAGAGCATTAGTTGAGTATTTTTC 57.101 29.630 0.00 0.00 0.00 2.29
113 114 9.289782 ACAAGAGCATTAGTTGAGTATTTTTCT 57.710 29.630 0.00 0.00 0.00 2.52
143 144 9.967451 TTATAAAAAGTATTCCACCACTCATCA 57.033 29.630 0.00 0.00 0.00 3.07
145 146 7.396540 AAAAAGTATTCCACCACTCATCATC 57.603 36.000 0.00 0.00 0.00 2.92
146 147 5.965033 AAGTATTCCACCACTCATCATCT 57.035 39.130 0.00 0.00 0.00 2.90
147 148 7.437713 AAAGTATTCCACCACTCATCATCTA 57.562 36.000 0.00 0.00 0.00 1.98
148 149 7.623999 AAGTATTCCACCACTCATCATCTAT 57.376 36.000 0.00 0.00 0.00 1.98
149 150 7.238486 AGTATTCCACCACTCATCATCTATC 57.762 40.000 0.00 0.00 0.00 2.08
150 151 7.015680 AGTATTCCACCACTCATCATCTATCT 58.984 38.462 0.00 0.00 0.00 1.98
151 152 6.760440 ATTCCACCACTCATCATCTATCTT 57.240 37.500 0.00 0.00 0.00 2.40
152 153 5.541953 TCCACCACTCATCATCTATCTTG 57.458 43.478 0.00 0.00 0.00 3.02
153 154 4.346127 TCCACCACTCATCATCTATCTTGG 59.654 45.833 0.00 0.00 0.00 3.61
154 155 4.102210 CCACCACTCATCATCTATCTTGGT 59.898 45.833 0.00 0.00 36.53 3.67
155 156 5.397221 CCACCACTCATCATCTATCTTGGTT 60.397 44.000 0.00 0.00 33.77 3.67
156 157 5.526479 CACCACTCATCATCTATCTTGGTTG 59.474 44.000 0.00 0.00 33.77 3.77
157 158 5.061853 CCACTCATCATCTATCTTGGTTGG 58.938 45.833 0.00 0.00 0.00 3.77
158 159 5.397221 CCACTCATCATCTATCTTGGTTGGT 60.397 44.000 0.00 0.00 0.00 3.67
159 160 5.526479 CACTCATCATCTATCTTGGTTGGTG 59.474 44.000 0.00 0.00 0.00 4.17
160 161 5.426509 ACTCATCATCTATCTTGGTTGGTGA 59.573 40.000 0.00 0.00 0.00 4.02
161 162 5.922053 TCATCATCTATCTTGGTTGGTGAG 58.078 41.667 0.00 0.00 0.00 3.51
162 163 5.662657 TCATCATCTATCTTGGTTGGTGAGA 59.337 40.000 0.00 0.00 0.00 3.27
163 164 6.328410 TCATCATCTATCTTGGTTGGTGAGAT 59.672 38.462 0.00 0.00 34.67 2.75
164 165 6.566079 TCATCTATCTTGGTTGGTGAGATT 57.434 37.500 0.00 0.00 32.68 2.40
165 166 6.962182 TCATCTATCTTGGTTGGTGAGATTT 58.038 36.000 0.00 0.00 32.68 2.17
166 167 7.405292 TCATCTATCTTGGTTGGTGAGATTTT 58.595 34.615 0.00 0.00 32.68 1.82
167 168 7.890127 TCATCTATCTTGGTTGGTGAGATTTTT 59.110 33.333 0.00 0.00 32.68 1.94
168 169 7.452880 TCTATCTTGGTTGGTGAGATTTTTG 57.547 36.000 0.00 0.00 32.68 2.44
169 170 7.230747 TCTATCTTGGTTGGTGAGATTTTTGA 58.769 34.615 0.00 0.00 32.68 2.69
170 171 6.729690 ATCTTGGTTGGTGAGATTTTTGAA 57.270 33.333 0.00 0.00 0.00 2.69
171 172 6.729690 TCTTGGTTGGTGAGATTTTTGAAT 57.270 33.333 0.00 0.00 0.00 2.57
172 173 7.123355 TCTTGGTTGGTGAGATTTTTGAATT 57.877 32.000 0.00 0.00 0.00 2.17
173 174 6.985645 TCTTGGTTGGTGAGATTTTTGAATTG 59.014 34.615 0.00 0.00 0.00 2.32
174 175 6.477053 TGGTTGGTGAGATTTTTGAATTGA 57.523 33.333 0.00 0.00 0.00 2.57
175 176 6.514947 TGGTTGGTGAGATTTTTGAATTGAG 58.485 36.000 0.00 0.00 0.00 3.02
176 177 5.406477 GGTTGGTGAGATTTTTGAATTGAGC 59.594 40.000 0.00 0.00 0.00 4.26
177 178 6.218746 GTTGGTGAGATTTTTGAATTGAGCT 58.781 36.000 0.00 0.00 0.00 4.09
178 179 6.017400 TGGTGAGATTTTTGAATTGAGCTC 57.983 37.500 6.82 6.82 0.00 4.09
179 180 5.771666 TGGTGAGATTTTTGAATTGAGCTCT 59.228 36.000 16.19 0.00 0.00 4.09
180 181 6.942005 TGGTGAGATTTTTGAATTGAGCTCTA 59.058 34.615 16.19 7.99 0.00 2.43
181 182 7.613022 TGGTGAGATTTTTGAATTGAGCTCTAT 59.387 33.333 16.19 10.36 0.00 1.98
182 183 9.113838 GGTGAGATTTTTGAATTGAGCTCTATA 57.886 33.333 16.19 0.48 0.00 1.31
187 188 9.226345 GATTTTTGAATTGAGCTCTATAAACCG 57.774 33.333 16.19 0.00 0.00 4.44
188 189 7.915293 TTTTGAATTGAGCTCTATAAACCGA 57.085 32.000 16.19 1.24 0.00 4.69
189 190 7.915293 TTTGAATTGAGCTCTATAAACCGAA 57.085 32.000 16.19 6.77 0.00 4.30
190 191 7.915293 TTGAATTGAGCTCTATAAACCGAAA 57.085 32.000 16.19 0.00 0.00 3.46
191 192 7.915293 TGAATTGAGCTCTATAAACCGAAAA 57.085 32.000 16.19 0.00 0.00 2.29
192 193 7.974675 TGAATTGAGCTCTATAAACCGAAAAG 58.025 34.615 16.19 0.00 0.00 2.27
194 195 5.670792 TGAGCTCTATAAACCGAAAAGGA 57.329 39.130 16.19 0.00 45.00 3.36
195 196 5.661458 TGAGCTCTATAAACCGAAAAGGAG 58.339 41.667 16.19 0.00 45.00 3.69
196 197 5.024785 AGCTCTATAAACCGAAAAGGAGG 57.975 43.478 0.00 0.00 45.00 4.30
197 198 4.715297 AGCTCTATAAACCGAAAAGGAGGA 59.285 41.667 0.00 0.00 45.00 3.71
198 199 5.189145 AGCTCTATAAACCGAAAAGGAGGAA 59.811 40.000 0.00 0.00 45.00 3.36
199 200 5.524281 GCTCTATAAACCGAAAAGGAGGAAG 59.476 44.000 0.00 0.00 45.00 3.46
207 208 3.510360 CCGAAAAGGAGGAAGTAGACAGA 59.490 47.826 0.00 0.00 45.00 3.41
223 224 5.687166 AGACAGACCCATTAAATTACGGA 57.313 39.130 0.00 0.00 0.00 4.69
233 234 5.643777 CCATTAAATTACGGAGATGGGCTAG 59.356 44.000 0.00 0.00 32.38 3.42
239 240 2.119495 ACGGAGATGGGCTAGAAATGT 58.881 47.619 0.00 0.00 0.00 2.71
250 257 3.134458 GCTAGAAATGTCCTCCATTCCG 58.866 50.000 0.00 0.00 43.04 4.30
254 261 2.024176 AATGTCCTCCATTCCGAACG 57.976 50.000 0.00 0.00 39.66 3.95
288 295 0.966179 GCCTGGTCGGTTGGAAATTT 59.034 50.000 0.00 0.00 34.25 1.82
296 303 3.249080 GTCGGTTGGAAATTTGAGAACGA 59.751 43.478 0.00 0.00 0.00 3.85
345 352 3.509659 TCGTGTGCCGATCGATCT 58.490 55.556 22.43 0.00 41.60 2.75
349 356 1.781429 CGTGTGCCGATCGATCTTAAG 59.219 52.381 22.43 9.96 39.56 1.85
350 357 2.128035 GTGTGCCGATCGATCTTAAGG 58.872 52.381 22.43 16.59 0.00 2.69
354 361 1.338200 GCCGATCGATCTTAAGGGCAT 60.338 52.381 26.68 0.00 38.88 4.40
355 362 2.341257 CCGATCGATCTTAAGGGCATG 58.659 52.381 22.43 3.52 0.00 4.06
356 363 2.289072 CCGATCGATCTTAAGGGCATGT 60.289 50.000 22.43 0.00 0.00 3.21
357 364 3.393800 CGATCGATCTTAAGGGCATGTT 58.606 45.455 22.43 0.00 0.00 2.71
358 365 3.809832 CGATCGATCTTAAGGGCATGTTT 59.190 43.478 22.43 0.00 0.00 2.83
359 366 4.319046 CGATCGATCTTAAGGGCATGTTTG 60.319 45.833 22.43 0.00 0.00 2.93
360 367 4.214986 TCGATCTTAAGGGCATGTTTGA 57.785 40.909 1.85 0.00 0.00 2.69
361 368 4.780815 TCGATCTTAAGGGCATGTTTGAT 58.219 39.130 1.85 0.00 0.00 2.57
362 369 5.192927 TCGATCTTAAGGGCATGTTTGATT 58.807 37.500 1.85 0.00 0.00 2.57
363 370 5.652014 TCGATCTTAAGGGCATGTTTGATTT 59.348 36.000 1.85 0.00 0.00 2.17
364 371 5.973565 CGATCTTAAGGGCATGTTTGATTTC 59.026 40.000 1.85 0.00 0.00 2.17
365 372 6.404623 CGATCTTAAGGGCATGTTTGATTTCA 60.405 38.462 1.85 0.00 0.00 2.69
366 373 6.662865 TCTTAAGGGCATGTTTGATTTCAA 57.337 33.333 1.85 0.00 0.00 2.69
367 374 7.243604 TCTTAAGGGCATGTTTGATTTCAAT 57.756 32.000 1.85 0.00 35.55 2.57
368 375 8.359875 TCTTAAGGGCATGTTTGATTTCAATA 57.640 30.769 1.85 0.00 35.55 1.90
369 376 8.811017 TCTTAAGGGCATGTTTGATTTCAATAA 58.189 29.630 1.85 0.00 35.55 1.40
370 377 9.090692 CTTAAGGGCATGTTTGATTTCAATAAG 57.909 33.333 0.00 0.00 35.55 1.73
371 378 6.610075 AGGGCATGTTTGATTTCAATAAGT 57.390 33.333 0.00 0.00 35.55 2.24
372 379 6.633856 AGGGCATGTTTGATTTCAATAAGTC 58.366 36.000 0.00 0.00 35.55 3.01
373 380 6.211184 AGGGCATGTTTGATTTCAATAAGTCA 59.789 34.615 0.00 0.00 35.55 3.41
374 381 6.311200 GGGCATGTTTGATTTCAATAAGTCAC 59.689 38.462 0.00 0.00 35.55 3.67
375 382 6.311200 GGCATGTTTGATTTCAATAAGTCACC 59.689 38.462 0.00 0.00 35.55 4.02
376 383 7.092716 GCATGTTTGATTTCAATAAGTCACCT 58.907 34.615 0.00 0.00 35.55 4.00
377 384 7.062605 GCATGTTTGATTTCAATAAGTCACCTG 59.937 37.037 0.00 0.00 35.55 4.00
378 385 7.815840 TGTTTGATTTCAATAAGTCACCTGA 57.184 32.000 0.00 0.00 35.55 3.86
379 386 7.648142 TGTTTGATTTCAATAAGTCACCTGAC 58.352 34.615 0.00 0.00 39.26 3.51
380 387 7.502226 TGTTTGATTTCAATAAGTCACCTGACT 59.498 33.333 1.87 1.87 45.11 3.41
409 416 5.807344 GTCAAGTGACTTAAAACCAGTGAC 58.193 41.667 0.00 0.00 41.65 3.67
410 417 5.585047 GTCAAGTGACTTAAAACCAGTGACT 59.415 40.000 0.00 0.00 40.05 3.41
411 418 6.093633 GTCAAGTGACTTAAAACCAGTGACTT 59.906 38.462 0.00 0.00 45.99 3.01
412 419 7.279313 GTCAAGTGACTTAAAACCAGTGACTTA 59.721 37.037 0.00 0.00 44.07 2.24
413 420 7.990886 TCAAGTGACTTAAAACCAGTGACTTAT 59.009 33.333 0.00 0.00 44.07 1.73
414 421 9.268268 CAAGTGACTTAAAACCAGTGACTTATA 57.732 33.333 0.00 0.00 44.07 0.98
415 422 9.841295 AAGTGACTTAAAACCAGTGACTTATAA 57.159 29.630 0.00 0.00 44.06 0.98
416 423 9.490379 AGTGACTTAAAACCAGTGACTTATAAG 57.510 33.333 11.05 11.05 35.43 1.73
417 424 9.269453 GTGACTTAAAACCAGTGACTTATAAGT 57.731 33.333 18.05 18.05 43.16 2.24
431 438 5.985911 ACTTATAAGTCACGCCTATTTGGT 58.014 37.500 12.50 0.00 32.86 3.67
432 439 6.412214 ACTTATAAGTCACGCCTATTTGGTT 58.588 36.000 12.50 0.00 32.86 3.67
433 440 6.315393 ACTTATAAGTCACGCCTATTTGGTTG 59.685 38.462 12.50 0.00 32.86 3.77
434 441 2.561478 AGTCACGCCTATTTGGTTGT 57.439 45.000 0.00 0.00 38.35 3.32
435 442 2.423577 AGTCACGCCTATTTGGTTGTC 58.576 47.619 0.00 0.00 38.35 3.18
436 443 2.147958 GTCACGCCTATTTGGTTGTCA 58.852 47.619 0.00 0.00 38.35 3.58
437 444 2.095919 GTCACGCCTATTTGGTTGTCAC 60.096 50.000 0.00 0.00 38.35 3.67
438 445 1.199097 CACGCCTATTTGGTTGTCACC 59.801 52.381 0.00 0.00 44.56 4.02
439 446 1.073284 ACGCCTATTTGGTTGTCACCT 59.927 47.619 0.00 0.00 44.61 4.00
440 447 1.468520 CGCCTATTTGGTTGTCACCTG 59.531 52.381 0.00 0.00 44.61 4.00
441 448 2.790433 GCCTATTTGGTTGTCACCTGA 58.210 47.619 0.00 0.00 44.61 3.86
442 449 2.488153 GCCTATTTGGTTGTCACCTGAC 59.512 50.000 0.00 0.00 44.61 3.51
443 450 3.081804 CCTATTTGGTTGTCACCTGACC 58.918 50.000 2.98 0.00 44.61 4.02
444 451 2.746279 ATTTGGTTGTCACCTGACCA 57.254 45.000 2.98 0.00 44.61 4.02
445 452 2.746279 TTTGGTTGTCACCTGACCAT 57.254 45.000 2.98 0.00 44.61 3.55
446 453 3.866703 TTTGGTTGTCACCTGACCATA 57.133 42.857 2.98 0.00 44.61 2.74
447 454 2.851263 TGGTTGTCACCTGACCATAC 57.149 50.000 2.98 0.00 44.61 2.39
448 455 1.349688 TGGTTGTCACCTGACCATACC 59.650 52.381 2.98 8.28 44.61 2.73
449 456 1.628846 GGTTGTCACCTGACCATACCT 59.371 52.381 2.98 0.00 44.15 3.08
450 457 2.039879 GGTTGTCACCTGACCATACCTT 59.960 50.000 2.98 0.00 44.15 3.50
451 458 3.335579 GTTGTCACCTGACCATACCTTC 58.664 50.000 2.98 0.00 44.15 3.46
452 459 1.906574 TGTCACCTGACCATACCTTCC 59.093 52.381 2.98 0.00 44.15 3.46
453 460 1.209747 GTCACCTGACCATACCTTCCC 59.790 57.143 0.00 0.00 39.07 3.97
454 461 1.203376 TCACCTGACCATACCTTCCCA 60.203 52.381 0.00 0.00 0.00 4.37
455 462 1.065418 CACCTGACCATACCTTCCCAC 60.065 57.143 0.00 0.00 0.00 4.61
456 463 0.546598 CCTGACCATACCTTCCCACC 59.453 60.000 0.00 0.00 0.00 4.61
457 464 1.584724 CTGACCATACCTTCCCACCT 58.415 55.000 0.00 0.00 0.00 4.00
458 465 1.916181 CTGACCATACCTTCCCACCTT 59.084 52.381 0.00 0.00 0.00 3.50
459 466 1.633432 TGACCATACCTTCCCACCTTG 59.367 52.381 0.00 0.00 0.00 3.61
460 467 1.633945 GACCATACCTTCCCACCTTGT 59.366 52.381 0.00 0.00 0.00 3.16
461 468 2.041216 GACCATACCTTCCCACCTTGTT 59.959 50.000 0.00 0.00 0.00 2.83
462 469 2.449345 ACCATACCTTCCCACCTTGTTT 59.551 45.455 0.00 0.00 0.00 2.83
463 470 3.116900 ACCATACCTTCCCACCTTGTTTT 60.117 43.478 0.00 0.00 0.00 2.43
464 471 3.901222 CCATACCTTCCCACCTTGTTTTT 59.099 43.478 0.00 0.00 0.00 1.94
484 491 6.408107 TTTTTAATGTAAAGGTGGTGGGAC 57.592 37.500 0.00 0.00 0.00 4.46
485 492 2.597578 AATGTAAAGGTGGTGGGACC 57.402 50.000 0.00 0.00 39.22 4.46
486 493 0.702316 ATGTAAAGGTGGTGGGACCC 59.298 55.000 2.45 2.45 37.50 4.46
487 494 1.002990 GTAAAGGTGGTGGGACCCG 60.003 63.158 5.91 0.00 37.50 5.28
488 495 2.897762 TAAAGGTGGTGGGACCCGC 61.898 63.158 16.38 16.38 37.50 6.13
492 499 4.006357 GTGGTGGGACCCGCGTAA 62.006 66.667 17.98 3.34 37.50 3.18
493 500 3.240011 TGGTGGGACCCGCGTAAA 61.240 61.111 17.98 0.74 37.50 2.01
494 501 2.032376 GGTGGGACCCGCGTAAAA 59.968 61.111 17.98 0.00 34.37 1.52
495 502 2.036571 GGTGGGACCCGCGTAAAAG 61.037 63.158 17.98 0.00 34.37 2.27
496 503 2.036571 GTGGGACCCGCGTAAAAGG 61.037 63.158 8.70 0.00 0.00 3.11
501 508 2.348243 CCCGCGTAAAAGGGGTGA 59.652 61.111 4.92 0.00 43.90 4.02
502 509 2.036571 CCCGCGTAAAAGGGGTGAC 61.037 63.158 4.92 0.00 43.90 3.67
503 510 1.004200 CCGCGTAAAAGGGGTGACT 60.004 57.895 4.92 0.00 39.15 3.41
504 511 0.604511 CCGCGTAAAAGGGGTGACTT 60.605 55.000 4.92 0.00 39.15 3.01
505 512 1.338011 CCGCGTAAAAGGGGTGACTTA 60.338 52.381 4.92 0.00 39.15 2.24
506 513 2.624636 CGCGTAAAAGGGGTGACTTAT 58.375 47.619 0.00 0.00 0.00 1.73
507 514 3.430651 CCGCGTAAAAGGGGTGACTTATA 60.431 47.826 4.92 0.00 39.15 0.98
508 515 4.183101 CGCGTAAAAGGGGTGACTTATAA 58.817 43.478 0.00 0.00 0.00 0.98
509 516 4.269363 CGCGTAAAAGGGGTGACTTATAAG 59.731 45.833 11.05 11.05 0.00 1.73
510 517 5.181009 GCGTAAAAGGGGTGACTTATAAGT 58.819 41.667 18.05 18.05 43.16 2.24
511 518 5.645067 GCGTAAAAGGGGTGACTTATAAGTT 59.355 40.000 18.96 3.63 39.88 2.66
512 519 6.149973 GCGTAAAAGGGGTGACTTATAAGTTT 59.850 38.462 18.96 9.35 39.88 2.66
513 520 7.308770 GCGTAAAAGGGGTGACTTATAAGTTTT 60.309 37.037 18.96 14.72 39.88 2.43
514 521 9.218440 CGTAAAAGGGGTGACTTATAAGTTTTA 57.782 33.333 18.96 13.84 39.88 1.52
517 524 9.650714 AAAAGGGGTGACTTATAAGTTTTAAGT 57.349 29.630 18.96 15.86 41.41 2.24
518 525 9.650714 AAAGGGGTGACTTATAAGTTTTAAGTT 57.349 29.630 18.96 7.30 39.40 2.66
519 526 8.631480 AGGGGTGACTTATAAGTTTTAAGTTG 57.369 34.615 18.96 0.00 39.40 3.16
520 527 7.668469 AGGGGTGACTTATAAGTTTTAAGTTGG 59.332 37.037 18.96 0.00 39.40 3.77
521 528 7.094075 GGGGTGACTTATAAGTTTTAAGTTGGG 60.094 40.741 18.96 0.00 39.40 4.12
522 529 7.094075 GGGTGACTTATAAGTTTTAAGTTGGGG 60.094 40.741 18.96 0.00 39.40 4.96
523 530 7.449395 GGTGACTTATAAGTTTTAAGTTGGGGT 59.551 37.037 18.96 0.00 39.40 4.95
524 531 8.294577 GTGACTTATAAGTTTTAAGTTGGGGTG 58.705 37.037 18.96 0.00 39.40 4.61
525 532 7.449086 TGACTTATAAGTTTTAAGTTGGGGTGG 59.551 37.037 18.96 0.00 39.40 4.61
526 533 7.528675 ACTTATAAGTTTTAAGTTGGGGTGGA 58.471 34.615 12.50 0.00 36.70 4.02
527 534 7.668469 ACTTATAAGTTTTAAGTTGGGGTGGAG 59.332 37.037 12.50 0.00 36.70 3.86
528 535 2.594131 AGTTTTAAGTTGGGGTGGAGC 58.406 47.619 0.00 0.00 0.00 4.70
529 536 2.091555 AGTTTTAAGTTGGGGTGGAGCA 60.092 45.455 0.00 0.00 0.00 4.26
530 537 2.696187 GTTTTAAGTTGGGGTGGAGCAA 59.304 45.455 0.00 0.00 0.00 3.91
531 538 1.989706 TTAAGTTGGGGTGGAGCAAC 58.010 50.000 0.00 0.00 0.00 4.17
532 539 1.145571 TAAGTTGGGGTGGAGCAACT 58.854 50.000 0.00 0.00 39.27 3.16
533 540 0.261696 AAGTTGGGGTGGAGCAACTT 59.738 50.000 0.00 0.00 41.36 2.66
534 541 1.145571 AGTTGGGGTGGAGCAACTTA 58.854 50.000 0.00 0.00 34.63 2.24
535 542 1.710809 AGTTGGGGTGGAGCAACTTAT 59.289 47.619 0.00 0.00 34.63 1.73
536 543 1.818674 GTTGGGGTGGAGCAACTTATG 59.181 52.381 0.00 0.00 0.00 1.90
537 544 1.367346 TGGGGTGGAGCAACTTATGA 58.633 50.000 0.00 0.00 0.00 2.15
538 545 1.004277 TGGGGTGGAGCAACTTATGAC 59.996 52.381 0.00 0.00 0.00 3.06
539 546 1.282157 GGGGTGGAGCAACTTATGACT 59.718 52.381 0.00 0.00 0.00 3.41
540 547 2.290960 GGGGTGGAGCAACTTATGACTT 60.291 50.000 0.00 0.00 0.00 3.01
541 548 3.054655 GGGGTGGAGCAACTTATGACTTA 60.055 47.826 0.00 0.00 0.00 2.24
542 549 4.385310 GGGGTGGAGCAACTTATGACTTAT 60.385 45.833 0.00 0.00 0.00 1.73
543 550 5.163237 GGGGTGGAGCAACTTATGACTTATA 60.163 44.000 0.00 0.00 0.00 0.98
544 551 6.354130 GGGTGGAGCAACTTATGACTTATAA 58.646 40.000 0.00 0.00 0.00 0.98
557 564 9.838339 CTTATGACTTATAAGTTGGGATGACTT 57.162 33.333 18.96 5.26 42.11 3.01
569 576 8.738645 AGTTGGGATGACTTATAAATTGAGTC 57.261 34.615 0.00 0.00 40.09 3.36
570 577 8.552296 AGTTGGGATGACTTATAAATTGAGTCT 58.448 33.333 10.79 0.00 40.28 3.24
571 578 8.616076 GTTGGGATGACTTATAAATTGAGTCTG 58.384 37.037 10.79 0.00 40.28 3.51
572 579 7.861629 TGGGATGACTTATAAATTGAGTCTGT 58.138 34.615 10.79 3.28 40.28 3.41
573 580 8.328758 TGGGATGACTTATAAATTGAGTCTGTT 58.671 33.333 10.79 0.00 40.28 3.16
574 581 9.178758 GGGATGACTTATAAATTGAGTCTGTTT 57.821 33.333 10.79 0.00 40.28 2.83
575 582 9.994432 GGATGACTTATAAATTGAGTCTGTTTG 57.006 33.333 10.79 0.00 40.28 2.93
576 583 9.994432 GATGACTTATAAATTGAGTCTGTTTGG 57.006 33.333 10.79 0.00 40.28 3.28
577 584 7.816640 TGACTTATAAATTGAGTCTGTTTGGC 58.183 34.615 10.79 0.00 40.28 4.52
578 585 7.446931 TGACTTATAAATTGAGTCTGTTTGGCA 59.553 33.333 10.79 0.00 40.28 4.92
579 586 8.177119 ACTTATAAATTGAGTCTGTTTGGCAA 57.823 30.769 0.00 0.00 0.00 4.52
580 587 8.637986 ACTTATAAATTGAGTCTGTTTGGCAAA 58.362 29.630 8.93 8.93 0.00 3.68
581 588 9.474920 CTTATAAATTGAGTCTGTTTGGCAAAA 57.525 29.630 15.29 4.59 0.00 2.44
582 589 9.995003 TTATAAATTGAGTCTGTTTGGCAAAAT 57.005 25.926 15.29 2.37 0.00 1.82
584 591 9.995003 ATAAATTGAGTCTGTTTGGCAAAATAA 57.005 25.926 15.29 2.73 0.00 1.40
585 592 7.951530 AATTGAGTCTGTTTGGCAAAATAAG 57.048 32.000 15.29 12.47 0.00 1.73
586 593 6.463995 TTGAGTCTGTTTGGCAAAATAAGT 57.536 33.333 15.29 5.57 0.00 2.24
587 594 6.072112 TGAGTCTGTTTGGCAAAATAAGTC 57.928 37.500 15.29 14.13 0.00 3.01
588 595 5.592282 TGAGTCTGTTTGGCAAAATAAGTCA 59.408 36.000 15.29 16.28 0.00 3.41
589 596 5.831997 AGTCTGTTTGGCAAAATAAGTCAC 58.168 37.500 15.29 7.95 0.00 3.67
590 597 5.594317 AGTCTGTTTGGCAAAATAAGTCACT 59.406 36.000 15.29 9.84 0.00 3.41
591 598 6.096846 AGTCTGTTTGGCAAAATAAGTCACTT 59.903 34.615 15.29 0.00 0.00 3.16
592 599 6.756542 GTCTGTTTGGCAAAATAAGTCACTTT 59.243 34.615 15.29 0.00 0.00 2.66
593 600 7.277760 GTCTGTTTGGCAAAATAAGTCACTTTT 59.722 33.333 15.29 0.00 0.00 2.27
594 601 7.821846 TCTGTTTGGCAAAATAAGTCACTTTTT 59.178 29.630 15.29 0.00 0.00 1.94
627 634 9.743057 TTGACTTATAAGTTGGTGATTTGTTTG 57.257 29.630 18.96 0.00 39.88 2.93
628 635 8.356657 TGACTTATAAGTTGGTGATTTGTTTGG 58.643 33.333 18.96 0.00 39.88 3.28
629 636 8.472007 ACTTATAAGTTGGTGATTTGTTTGGA 57.528 30.769 12.50 0.00 35.21 3.53
630 637 8.919145 ACTTATAAGTTGGTGATTTGTTTGGAA 58.081 29.630 12.50 0.00 35.21 3.53
631 638 9.191995 CTTATAAGTTGGTGATTTGTTTGGAAC 57.808 33.333 4.18 0.00 0.00 3.62
632 639 4.400529 AGTTGGTGATTTGTTTGGAACC 57.599 40.909 0.00 0.00 0.00 3.62
633 640 3.772025 AGTTGGTGATTTGTTTGGAACCA 59.228 39.130 0.00 0.00 35.95 3.67
634 641 4.223923 AGTTGGTGATTTGTTTGGAACCAA 59.776 37.500 1.83 1.83 43.50 3.67
635 642 4.826274 TGGTGATTTGTTTGGAACCAAA 57.174 36.364 14.02 14.02 42.77 3.28
636 643 4.764172 TGGTGATTTGTTTGGAACCAAAG 58.236 39.130 17.72 0.00 45.16 2.77
637 644 3.559655 GGTGATTTGTTTGGAACCAAAGC 59.440 43.478 17.72 13.17 45.16 3.51
638 645 3.559655 GTGATTTGTTTGGAACCAAAGCC 59.440 43.478 17.72 9.06 45.16 4.35
639 646 3.454082 TGATTTGTTTGGAACCAAAGCCT 59.546 39.130 17.72 5.14 45.16 4.58
640 647 4.651503 TGATTTGTTTGGAACCAAAGCCTA 59.348 37.500 17.72 6.16 45.16 3.93
641 648 5.129485 TGATTTGTTTGGAACCAAAGCCTAA 59.871 36.000 17.72 11.17 45.16 2.69
642 649 4.394439 TTGTTTGGAACCAAAGCCTAAC 57.606 40.909 17.72 7.82 45.16 2.34
643 650 3.637769 TGTTTGGAACCAAAGCCTAACT 58.362 40.909 17.72 0.00 45.16 2.24
644 651 3.383185 TGTTTGGAACCAAAGCCTAACTG 59.617 43.478 17.72 0.00 45.16 3.16
645 652 1.616159 TGGAACCAAAGCCTAACTGC 58.384 50.000 0.00 0.00 0.00 4.40
646 653 1.133637 TGGAACCAAAGCCTAACTGCA 60.134 47.619 0.00 0.00 0.00 4.41
647 654 1.960689 GGAACCAAAGCCTAACTGCAA 59.039 47.619 0.00 0.00 0.00 4.08
648 655 2.029918 GGAACCAAAGCCTAACTGCAAG 60.030 50.000 0.00 0.00 42.29 4.01
691 698 1.299468 CGGCGAGCTGAGGTCATAC 60.299 63.158 12.54 0.30 0.00 2.39
703 710 4.910195 TGAGGTCATACACAAAGATGCTT 58.090 39.130 0.00 0.00 0.00 3.91
747 754 6.105333 GCTCTCCTGCATCTATAATGGTAAG 58.895 44.000 0.00 0.00 0.00 2.34
750 757 4.526650 TCCTGCATCTATAATGGTAAGCGA 59.473 41.667 0.00 0.00 0.00 4.93
762 774 1.203994 GGTAAGCGAGCAGTGGAGTTA 59.796 52.381 0.00 0.00 0.00 2.24
763 775 2.531206 GTAAGCGAGCAGTGGAGTTAG 58.469 52.381 0.00 0.00 0.00 2.34
764 776 0.390472 AAGCGAGCAGTGGAGTTAGC 60.390 55.000 0.00 0.00 0.00 3.09
765 777 1.216710 GCGAGCAGTGGAGTTAGCT 59.783 57.895 0.00 0.00 40.60 3.32
767 779 3.337398 GAGCAGTGGAGTTAGCTCG 57.663 57.895 0.00 0.00 43.27 5.03
768 780 0.179124 GAGCAGTGGAGTTAGCTCGG 60.179 60.000 0.00 0.00 43.27 4.63
769 781 1.811679 GCAGTGGAGTTAGCTCGGC 60.812 63.158 0.00 0.00 42.53 5.54
770 782 1.591703 CAGTGGAGTTAGCTCGGCA 59.408 57.895 0.00 0.00 42.53 5.69
772 784 1.153549 GTGGAGTTAGCTCGGCAGG 60.154 63.158 0.00 0.00 42.53 4.85
774 786 2.359967 GGAGTTAGCTCGGCAGGGT 61.360 63.158 0.00 0.00 42.53 4.34
775 787 1.597461 GAGTTAGCTCGGCAGGGTT 59.403 57.895 0.00 0.00 31.39 4.11
776 788 0.460459 GAGTTAGCTCGGCAGGGTTC 60.460 60.000 0.00 0.00 31.39 3.62
777 789 1.449778 GTTAGCTCGGCAGGGTTCC 60.450 63.158 0.00 0.00 0.00 3.62
778 790 1.612442 TTAGCTCGGCAGGGTTCCT 60.612 57.895 0.00 0.00 0.00 3.36
779 791 1.614241 TTAGCTCGGCAGGGTTCCTC 61.614 60.000 0.00 0.00 0.00 3.71
780 792 4.475135 GCTCGGCAGGGTTCCTCC 62.475 72.222 0.00 0.00 0.00 4.30
781 793 2.685380 CTCGGCAGGGTTCCTCCT 60.685 66.667 0.00 0.00 37.71 3.69
804 816 2.121992 CTGCCTGCCACTCTGGTCTT 62.122 60.000 0.00 0.00 40.46 3.01
843 855 6.932356 TCCAAGAACAGAAATAGATGATGC 57.068 37.500 0.00 0.00 0.00 3.91
1015 1094 3.451894 CCATGGTTGCGGCCCTTC 61.452 66.667 2.57 0.00 0.00 3.46
1183 1264 0.035458 CCACTCACCCACCTTCTGTC 59.965 60.000 0.00 0.00 0.00 3.51
1266 1370 2.969238 CGCCTTGCTCCGGCTATG 60.969 66.667 0.00 0.00 45.37 2.23
1272 1384 0.819259 TTGCTCCGGCTATGATTGGC 60.819 55.000 0.00 0.00 39.59 4.52
1287 1399 2.034221 GGCGGTTCTTGGAGGCTT 59.966 61.111 0.00 0.00 0.00 4.35
1288 1400 1.603739 GGCGGTTCTTGGAGGCTTT 60.604 57.895 0.00 0.00 0.00 3.51
1289 1401 1.587043 GGCGGTTCTTGGAGGCTTTC 61.587 60.000 0.00 0.00 0.00 2.62
1290 1402 0.606673 GCGGTTCTTGGAGGCTTTCT 60.607 55.000 0.00 0.00 0.00 2.52
1291 1403 1.897560 CGGTTCTTGGAGGCTTTCTT 58.102 50.000 0.00 0.00 0.00 2.52
1292 1404 1.537202 CGGTTCTTGGAGGCTTTCTTG 59.463 52.381 0.00 0.00 0.00 3.02
1293 1405 2.587522 GGTTCTTGGAGGCTTTCTTGT 58.412 47.619 0.00 0.00 0.00 3.16
1309 1421 6.607600 GCTTTCTTGTTCCTTCCCCTATATTT 59.392 38.462 0.00 0.00 0.00 1.40
1310 1422 7.778382 GCTTTCTTGTTCCTTCCCCTATATTTA 59.222 37.037 0.00 0.00 0.00 1.40
1311 1423 9.868160 CTTTCTTGTTCCTTCCCCTATATTTAT 57.132 33.333 0.00 0.00 0.00 1.40
1318 1430 6.354130 TCCTTCCCCTATATTTATTATGCGC 58.646 40.000 0.00 0.00 0.00 6.09
1319 1431 5.531287 CCTTCCCCTATATTTATTATGCGCC 59.469 44.000 4.18 0.00 0.00 6.53
1320 1432 5.043737 TCCCCTATATTTATTATGCGCCC 57.956 43.478 4.18 0.00 0.00 6.13
1321 1433 3.813166 CCCCTATATTTATTATGCGCCCG 59.187 47.826 4.18 0.00 0.00 6.13
1322 1434 3.813166 CCCTATATTTATTATGCGCCCGG 59.187 47.826 4.18 0.00 0.00 5.73
1323 1435 3.813166 CCTATATTTATTATGCGCCCGGG 59.187 47.826 19.09 19.09 0.00 5.73
1324 1436 2.116827 TATTTATTATGCGCCCGGGG 57.883 50.000 25.28 13.97 0.00 5.73
1325 1437 0.111639 ATTTATTATGCGCCCGGGGT 59.888 50.000 25.28 0.00 0.00 4.95
1375 1487 3.392616 AGGAGTGACTGGTGAGTGAATTT 59.607 43.478 0.00 0.00 30.16 1.82
1384 1496 3.399644 TGGTGAGTGAATTTTTAGGGGGA 59.600 43.478 0.00 0.00 0.00 4.81
1387 1500 5.321927 GTGAGTGAATTTTTAGGGGGAAGA 58.678 41.667 0.00 0.00 0.00 2.87
1705 1821 0.741326 TCGACTGGCTGATGCTCTAC 59.259 55.000 0.00 0.00 39.59 2.59
1761 1880 4.796231 CGCGGGTCCGTTCCTCTG 62.796 72.222 11.25 0.00 42.09 3.35
1853 1972 0.614979 GTACCTGCTCCTCCTGGACA 60.615 60.000 0.00 0.00 37.46 4.02
2006 2128 6.112734 CCTGCTTATTCACACATACCAGTTA 58.887 40.000 0.00 0.00 0.00 2.24
2014 2136 5.965922 TCACACATACCAGTTACTCATCTG 58.034 41.667 0.00 0.00 0.00 2.90
2042 2164 1.781025 TTTTGTTGGCCTGACGCTCG 61.781 55.000 3.32 0.00 37.74 5.03
2212 2334 0.888619 ATCAGAGTTCTTCGACCGCA 59.111 50.000 0.00 0.00 0.00 5.69
2299 2424 3.828451 CCTCCTTCAACAACATGTGGATT 59.172 43.478 7.39 0.00 28.99 3.01
2303 2428 7.339212 CCTCCTTCAACAACATGTGGATTATTA 59.661 37.037 7.39 0.00 28.99 0.98
2348 2473 2.620115 GTGATCCGTATCCCGTGTTCTA 59.380 50.000 0.00 0.00 33.66 2.10
2359 2484 8.295288 CGTATCCCGTGTTCTATACTTCTATTT 58.705 37.037 0.00 0.00 0.00 1.40
2360 2485 9.623350 GTATCCCGTGTTCTATACTTCTATTTC 57.377 37.037 0.00 0.00 0.00 2.17
2375 2500 8.690680 ACTTCTATTTCGTGTGATTCTCTAAC 57.309 34.615 0.00 0.00 0.00 2.34
2393 2518 2.124011 ACAAATTGTCTTGCTGCGTG 57.876 45.000 0.00 0.00 0.00 5.34
2424 2552 6.909550 TTTGGTTTGTAGATTATGCAAGGT 57.090 33.333 0.00 0.00 34.79 3.50
2571 2699 0.534412 CGCTCAATGAGGAGACTGGT 59.466 55.000 12.66 0.00 44.43 4.00
2614 2742 3.313526 CCAGCTCTACACAATAATGGTGC 59.686 47.826 0.00 0.00 39.87 5.01
2648 2776 5.422666 TGTGTAGTTTGTCATCTGCTTTG 57.577 39.130 0.00 0.00 0.00 2.77
2651 2783 3.637998 AGTTTGTCATCTGCTTTGCTG 57.362 42.857 0.00 0.00 0.00 4.41
2783 2915 0.590195 GTCTGCTTGCAGTTCAGGTG 59.410 55.000 20.20 0.00 0.00 4.00
2808 2940 1.133976 CACTTGATTCCCTAGCCCTGG 60.134 57.143 0.00 0.00 0.00 4.45
2898 3031 3.071023 CCTCTTGTCTGGTTAACACCTCA 59.929 47.826 8.10 0.00 44.61 3.86
3069 3495 5.675538 ACCTACAAGAACAGCATTCCTATC 58.324 41.667 0.00 0.00 0.00 2.08
3121 3547 2.893489 GGTGTTTCCTTTTCAGGCTGAT 59.107 45.455 19.50 0.00 40.58 2.90
3133 3559 5.957771 TTCAGGCTGATAGTATTTCAGGT 57.042 39.130 19.50 0.00 40.77 4.00
3164 3590 4.574421 CCAATACGCATATTCCAGTTGTCA 59.426 41.667 0.00 0.00 0.00 3.58
3262 3688 6.014242 AGTTGAACTACTCACTCATTGATGGA 60.014 38.462 0.00 0.00 32.21 3.41
3289 3715 8.814038 AAAATTATATGAGGGGATATGAGTGC 57.186 34.615 0.00 0.00 0.00 4.40
3308 3735 4.082571 AGTGCAAGCATAAAAGTTAGCAGG 60.083 41.667 0.00 0.00 0.00 4.85
3334 3761 8.585881 GTCAGATTACCATATTGGCTACTCTTA 58.414 37.037 0.00 0.00 42.67 2.10
3483 3910 7.651808 CAAAAACTGTGTTCTCTTGGTATCAT 58.348 34.615 0.00 0.00 0.00 2.45
3815 4244 5.336150 ACTCTGGATGCCTAATATCGATG 57.664 43.478 8.54 0.00 0.00 3.84
3868 4297 6.708502 GGAAGCTTATACCCTCAATCTCTTTC 59.291 42.308 0.00 0.00 0.00 2.62
3885 4314 1.497309 TTCCAGGGCCGATCCAAAGT 61.497 55.000 0.00 0.00 36.21 2.66
3967 4396 8.850156 GCTCAAGGTATACAATTATGAAACCAT 58.150 33.333 5.01 0.00 32.35 3.55
4548 5354 4.823790 GGTTACTGTTACCCAACAACTG 57.176 45.455 4.66 0.00 43.92 3.16
4669 5475 1.176527 GCATGCAAAGTTAGCCTCCA 58.823 50.000 14.21 0.00 0.00 3.86
4821 5627 6.966632 CGTTTGAATGTATGGTACCATTTCAG 59.033 38.462 31.72 18.18 34.35 3.02
4825 5631 7.517320 TGAATGTATGGTACCATTTCAGCTAT 58.483 34.615 31.72 17.01 37.82 2.97
4832 5638 3.113260 ACCATTTCAGCTATAGCCGTC 57.887 47.619 21.17 0.00 43.38 4.79
4875 5681 8.647226 GTGTTTTATTTGATCTTATTGTGTGGC 58.353 33.333 0.00 0.00 0.00 5.01
4923 5729 1.079503 GTGGAGCTCAAACGATCACC 58.920 55.000 17.19 0.00 0.00 4.02
4941 5747 2.947652 CACCTATCACTGCAATTCCCAG 59.052 50.000 0.00 1.97 36.41 4.45
5043 5849 5.352284 TCTAAGCTTGAAGTAGCACATAGC 58.648 41.667 9.86 0.00 43.68 2.97
5099 5905 2.578786 TGTGATGCCAGCCATGATTAG 58.421 47.619 0.00 0.00 33.29 1.73
5104 5913 5.474532 GTGATGCCAGCCATGATTAGATTAA 59.525 40.000 0.00 0.00 33.29 1.40
5315 6127 2.105930 GCAAAAACCGGCAGTGCA 59.894 55.556 18.61 0.00 35.28 4.57
5321 6133 2.058829 AAACCGGCAGTGCAGTTTCG 62.059 55.000 22.76 14.57 33.47 3.46
5348 6160 3.118629 GGATCACTGCAGTACCTTCATCA 60.119 47.826 21.20 0.00 0.00 3.07
5456 6268 4.457496 CGGCCTGCAGTCGATGGT 62.457 66.667 18.14 0.00 0.00 3.55
5790 6672 0.652592 CCAATAAGCTTCGTCGCCAG 59.347 55.000 0.00 0.00 0.00 4.85
5868 6750 2.946990 ACACGGTTTACTTCAACCTTGG 59.053 45.455 12.25 0.53 45.92 3.61
5901 6783 1.589716 AAGATCACTTGCGCCTTGGC 61.590 55.000 4.18 0.75 34.80 4.52
5930 6812 1.142262 ACCCAGAATAATACACGCCCC 59.858 52.381 0.00 0.00 0.00 5.80
5931 6813 1.420138 CCCAGAATAATACACGCCCCT 59.580 52.381 0.00 0.00 0.00 4.79
5935 6817 4.401202 CCAGAATAATACACGCCCCTTTTT 59.599 41.667 0.00 0.00 0.00 1.94
6004 6886 9.793259 AATGAGTTTGTTTCTTCTGGAATACTA 57.207 29.630 0.00 0.00 33.53 1.82
6042 6924 4.875544 TGCGATAGTATGGTTTCTTTGC 57.124 40.909 0.00 0.00 39.35 3.68
6047 6929 5.812642 CGATAGTATGGTTTCTTTGCTGAGT 59.187 40.000 0.00 0.00 0.00 3.41
6048 6930 6.978659 CGATAGTATGGTTTCTTTGCTGAGTA 59.021 38.462 0.00 0.00 0.00 2.59
6068 6950 7.107542 TGAGTAAAGTTACTTCTGGTTGTGTT 58.892 34.615 5.24 0.00 43.64 3.32
6098 6980 9.829507 TTTATTGTTTTCAGATGAACAAACCAT 57.170 25.926 13.59 4.07 45.55 3.55
6109 6991 5.918426 TGAACAAACCATGATGTGCATAT 57.082 34.783 0.00 0.00 34.82 1.78
6110 6992 7.503230 AGATGAACAAACCATGATGTGCATATA 59.497 33.333 15.51 0.00 44.13 0.86
6179 7062 4.235079 TGCTGCTGTTTATCCTGGTAAT 57.765 40.909 0.00 0.00 0.00 1.89
6202 7085 5.027460 TGGATAAGTAGTCAGGGCAAGTAA 58.973 41.667 0.00 0.00 0.00 2.24
6210 7093 0.250901 CAGGGCAAGTAACAGCACCT 60.251 55.000 0.00 0.00 33.76 4.00
6371 7254 6.117488 AGAGTTGATCAATGTGCACATCATA 58.883 36.000 31.45 19.70 35.10 2.15
6372 7255 6.771267 AGAGTTGATCAATGTGCACATCATAT 59.229 34.615 31.45 23.08 35.10 1.78
6397 7280 4.539235 GGGGCCTGACCACAAATT 57.461 55.556 0.84 0.00 43.87 1.82
6411 7294 8.729805 TGACCACAAATTAAGCAAAAGAAAAT 57.270 26.923 0.00 0.00 0.00 1.82
6412 7295 8.825745 TGACCACAAATTAAGCAAAAGAAAATC 58.174 29.630 0.00 0.00 0.00 2.17
6630 7517 6.749923 AACTTCAGCTTTTCTAAGGCATAG 57.250 37.500 0.00 0.00 31.76 2.23
6635 7522 7.524717 TCAGCTTTTCTAAGGCATAGTTTTT 57.475 32.000 0.00 0.00 33.08 1.94
6646 7533 9.391006 CTAAGGCATAGTTTTTAACTGGTGATA 57.609 33.333 2.45 0.00 42.84 2.15
6681 7568 5.068723 CCTCCATTCTTTTCATCCTGGATTG 59.931 44.000 6.42 3.25 32.66 2.67
6746 7633 9.959721 ACATATAAGAAGAACTGTAACCATGTT 57.040 29.630 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 7.408756 TTTCCTCTTAATACTTGCATGCAAT 57.591 32.000 31.96 22.79 35.20 3.56
13 14 6.832520 TTTCCTCTTAATACTTGCATGCAA 57.167 33.333 30.12 30.12 0.00 4.08
14 15 7.122501 TCAATTTCCTCTTAATACTTGCATGCA 59.877 33.333 18.46 18.46 0.00 3.96
15 16 7.433425 GTCAATTTCCTCTTAATACTTGCATGC 59.567 37.037 11.82 11.82 0.00 4.06
16 17 7.917505 GGTCAATTTCCTCTTAATACTTGCATG 59.082 37.037 0.00 0.00 0.00 4.06
17 18 7.836183 AGGTCAATTTCCTCTTAATACTTGCAT 59.164 33.333 0.00 0.00 0.00 3.96
18 19 7.175104 AGGTCAATTTCCTCTTAATACTTGCA 58.825 34.615 0.00 0.00 0.00 4.08
19 20 7.631717 AGGTCAATTTCCTCTTAATACTTGC 57.368 36.000 0.00 0.00 0.00 4.01
22 23 9.343539 GCAATAGGTCAATTTCCTCTTAATACT 57.656 33.333 2.60 0.00 36.60 2.12
23 24 9.120538 TGCAATAGGTCAATTTCCTCTTAATAC 57.879 33.333 2.60 0.00 36.60 1.89
24 25 9.866655 ATGCAATAGGTCAATTTCCTCTTAATA 57.133 29.630 0.00 0.00 36.60 0.98
25 26 8.636213 CATGCAATAGGTCAATTTCCTCTTAAT 58.364 33.333 0.00 0.00 36.60 1.40
26 27 7.416664 GCATGCAATAGGTCAATTTCCTCTTAA 60.417 37.037 14.21 0.00 36.60 1.85
27 28 6.039717 GCATGCAATAGGTCAATTTCCTCTTA 59.960 38.462 14.21 0.00 36.60 2.10
28 29 5.163478 GCATGCAATAGGTCAATTTCCTCTT 60.163 40.000 14.21 0.00 36.60 2.85
29 30 4.340381 GCATGCAATAGGTCAATTTCCTCT 59.660 41.667 14.21 0.00 36.60 3.69
30 31 4.098349 TGCATGCAATAGGTCAATTTCCTC 59.902 41.667 20.30 0.00 36.60 3.71
31 32 4.025360 TGCATGCAATAGGTCAATTTCCT 58.975 39.130 20.30 4.62 38.91 3.36
32 33 4.389890 TGCATGCAATAGGTCAATTTCC 57.610 40.909 20.30 0.00 0.00 3.13
33 34 5.413499 ACTTGCATGCAATAGGTCAATTTC 58.587 37.500 31.96 0.00 35.20 2.17
34 35 5.410355 ACTTGCATGCAATAGGTCAATTT 57.590 34.783 31.96 2.26 35.20 1.82
35 36 6.720112 ATACTTGCATGCAATAGGTCAATT 57.280 33.333 31.96 8.18 35.20 2.32
36 37 7.822161 TTATACTTGCATGCAATAGGTCAAT 57.178 32.000 31.96 18.90 35.20 2.57
37 38 7.339212 ACTTTATACTTGCATGCAATAGGTCAA 59.661 33.333 31.96 19.40 35.20 3.18
38 39 6.828273 ACTTTATACTTGCATGCAATAGGTCA 59.172 34.615 31.96 15.30 35.20 4.02
39 40 7.134815 CACTTTATACTTGCATGCAATAGGTC 58.865 38.462 31.96 0.00 35.20 3.85
40 41 6.460123 GCACTTTATACTTGCATGCAATAGGT 60.460 38.462 31.96 26.60 36.22 3.08
41 42 5.916883 GCACTTTATACTTGCATGCAATAGG 59.083 40.000 31.96 22.62 36.22 2.57
42 43 6.497437 TGCACTTTATACTTGCATGCAATAG 58.503 36.000 31.96 23.70 41.29 1.73
43 44 6.448207 TGCACTTTATACTTGCATGCAATA 57.552 33.333 31.96 23.99 41.29 1.90
44 45 5.327616 TGCACTTTATACTTGCATGCAAT 57.672 34.783 31.96 22.79 41.29 3.56
45 46 4.780275 TGCACTTTATACTTGCATGCAA 57.220 36.364 30.12 30.12 41.29 4.08
51 52 7.087639 TGTTTACCAATGCACTTTATACTTGC 58.912 34.615 0.00 0.00 36.76 4.01
52 53 9.638239 AATGTTTACCAATGCACTTTATACTTG 57.362 29.630 0.00 0.00 0.00 3.16
86 87 9.899226 GAAAAATACTCAACTAATGCTCTTGTT 57.101 29.630 0.00 0.00 0.00 2.83
87 88 9.289782 AGAAAAATACTCAACTAATGCTCTTGT 57.710 29.630 0.00 0.00 0.00 3.16
117 118 9.967451 TGATGAGTGGTGGAATACTTTTTATAA 57.033 29.630 0.00 0.00 0.00 0.98
119 120 9.125026 GATGATGAGTGGTGGAATACTTTTTAT 57.875 33.333 0.00 0.00 0.00 1.40
120 121 8.328758 AGATGATGAGTGGTGGAATACTTTTTA 58.671 33.333 0.00 0.00 0.00 1.52
121 122 7.177878 AGATGATGAGTGGTGGAATACTTTTT 58.822 34.615 0.00 0.00 0.00 1.94
122 123 6.725364 AGATGATGAGTGGTGGAATACTTTT 58.275 36.000 0.00 0.00 0.00 2.27
123 124 6.319048 AGATGATGAGTGGTGGAATACTTT 57.681 37.500 0.00 0.00 0.00 2.66
124 125 5.965033 AGATGATGAGTGGTGGAATACTT 57.035 39.130 0.00 0.00 0.00 2.24
125 126 7.015680 AGATAGATGATGAGTGGTGGAATACT 58.984 38.462 0.00 0.00 0.00 2.12
126 127 7.238486 AGATAGATGATGAGTGGTGGAATAC 57.762 40.000 0.00 0.00 0.00 1.89
127 128 7.256439 CCAAGATAGATGATGAGTGGTGGAATA 60.256 40.741 0.00 0.00 0.00 1.75
128 129 6.465464 CCAAGATAGATGATGAGTGGTGGAAT 60.465 42.308 0.00 0.00 0.00 3.01
129 130 5.163269 CCAAGATAGATGATGAGTGGTGGAA 60.163 44.000 0.00 0.00 0.00 3.53
130 131 4.346127 CCAAGATAGATGATGAGTGGTGGA 59.654 45.833 0.00 0.00 0.00 4.02
131 132 4.102210 ACCAAGATAGATGATGAGTGGTGG 59.898 45.833 0.00 0.00 36.77 4.61
132 133 5.287674 ACCAAGATAGATGATGAGTGGTG 57.712 43.478 0.00 0.00 36.77 4.17
133 134 5.397221 CCAACCAAGATAGATGATGAGTGGT 60.397 44.000 0.00 0.00 39.79 4.16
134 135 5.061853 CCAACCAAGATAGATGATGAGTGG 58.938 45.833 0.00 0.00 0.00 4.00
135 136 5.526479 CACCAACCAAGATAGATGATGAGTG 59.474 44.000 0.00 0.00 0.00 3.51
136 137 5.426509 TCACCAACCAAGATAGATGATGAGT 59.573 40.000 0.00 0.00 0.00 3.41
137 138 5.922053 TCACCAACCAAGATAGATGATGAG 58.078 41.667 0.00 0.00 0.00 2.90
138 139 5.662657 TCTCACCAACCAAGATAGATGATGA 59.337 40.000 0.00 0.00 0.00 2.92
139 140 5.922053 TCTCACCAACCAAGATAGATGATG 58.078 41.667 0.00 0.00 0.00 3.07
140 141 6.760440 ATCTCACCAACCAAGATAGATGAT 57.240 37.500 0.00 0.00 0.00 2.45
141 142 6.566079 AATCTCACCAACCAAGATAGATGA 57.434 37.500 0.00 0.00 0.00 2.92
142 143 7.636150 AAAATCTCACCAACCAAGATAGATG 57.364 36.000 0.00 0.00 0.00 2.90
143 144 7.890127 TCAAAAATCTCACCAACCAAGATAGAT 59.110 33.333 0.00 0.00 0.00 1.98
144 145 7.230747 TCAAAAATCTCACCAACCAAGATAGA 58.769 34.615 0.00 0.00 0.00 1.98
145 146 7.452880 TCAAAAATCTCACCAACCAAGATAG 57.547 36.000 0.00 0.00 0.00 2.08
146 147 7.831691 TTCAAAAATCTCACCAACCAAGATA 57.168 32.000 0.00 0.00 0.00 1.98
147 148 6.729690 TTCAAAAATCTCACCAACCAAGAT 57.270 33.333 0.00 0.00 0.00 2.40
148 149 6.729690 ATTCAAAAATCTCACCAACCAAGA 57.270 33.333 0.00 0.00 0.00 3.02
149 150 6.985645 TCAATTCAAAAATCTCACCAACCAAG 59.014 34.615 0.00 0.00 0.00 3.61
150 151 6.882656 TCAATTCAAAAATCTCACCAACCAA 58.117 32.000 0.00 0.00 0.00 3.67
151 152 6.477053 TCAATTCAAAAATCTCACCAACCA 57.523 33.333 0.00 0.00 0.00 3.67
152 153 5.406477 GCTCAATTCAAAAATCTCACCAACC 59.594 40.000 0.00 0.00 0.00 3.77
153 154 6.218746 AGCTCAATTCAAAAATCTCACCAAC 58.781 36.000 0.00 0.00 0.00 3.77
154 155 6.266103 AGAGCTCAATTCAAAAATCTCACCAA 59.734 34.615 17.77 0.00 0.00 3.67
155 156 5.771666 AGAGCTCAATTCAAAAATCTCACCA 59.228 36.000 17.77 0.00 0.00 4.17
156 157 6.264841 AGAGCTCAATTCAAAAATCTCACC 57.735 37.500 17.77 0.00 0.00 4.02
161 162 9.226345 CGGTTTATAGAGCTCAATTCAAAAATC 57.774 33.333 17.77 5.82 0.00 2.17
162 163 8.956426 TCGGTTTATAGAGCTCAATTCAAAAAT 58.044 29.630 17.77 0.00 0.00 1.82
163 164 8.330466 TCGGTTTATAGAGCTCAATTCAAAAA 57.670 30.769 17.77 3.68 0.00 1.94
164 165 7.915293 TCGGTTTATAGAGCTCAATTCAAAA 57.085 32.000 17.77 4.71 0.00 2.44
165 166 7.915293 TTCGGTTTATAGAGCTCAATTCAAA 57.085 32.000 17.77 5.77 0.00 2.69
166 167 7.915293 TTTCGGTTTATAGAGCTCAATTCAA 57.085 32.000 17.77 0.00 0.00 2.69
167 168 7.065803 CCTTTTCGGTTTATAGAGCTCAATTCA 59.934 37.037 17.77 0.00 0.00 2.57
168 169 7.280205 TCCTTTTCGGTTTATAGAGCTCAATTC 59.720 37.037 17.77 0.98 0.00 2.17
169 170 7.110155 TCCTTTTCGGTTTATAGAGCTCAATT 58.890 34.615 17.77 2.24 0.00 2.32
170 171 6.650120 TCCTTTTCGGTTTATAGAGCTCAAT 58.350 36.000 17.77 0.00 0.00 2.57
171 172 6.045072 TCCTTTTCGGTTTATAGAGCTCAA 57.955 37.500 17.77 0.00 0.00 3.02
172 173 5.395324 CCTCCTTTTCGGTTTATAGAGCTCA 60.395 44.000 17.77 2.09 0.00 4.26
173 174 5.051153 CCTCCTTTTCGGTTTATAGAGCTC 58.949 45.833 5.27 5.27 0.00 4.09
174 175 4.715297 TCCTCCTTTTCGGTTTATAGAGCT 59.285 41.667 0.00 0.00 0.00 4.09
175 176 5.019785 TCCTCCTTTTCGGTTTATAGAGC 57.980 43.478 0.00 0.00 0.00 4.09
176 177 6.641474 ACTTCCTCCTTTTCGGTTTATAGAG 58.359 40.000 0.00 0.00 0.00 2.43
177 178 6.616237 ACTTCCTCCTTTTCGGTTTATAGA 57.384 37.500 0.00 0.00 0.00 1.98
178 179 7.705752 GTCTACTTCCTCCTTTTCGGTTTATAG 59.294 40.741 0.00 0.00 0.00 1.31
179 180 7.178983 TGTCTACTTCCTCCTTTTCGGTTTATA 59.821 37.037 0.00 0.00 0.00 0.98
180 181 6.013984 TGTCTACTTCCTCCTTTTCGGTTTAT 60.014 38.462 0.00 0.00 0.00 1.40
181 182 5.305128 TGTCTACTTCCTCCTTTTCGGTTTA 59.695 40.000 0.00 0.00 0.00 2.01
182 183 4.102054 TGTCTACTTCCTCCTTTTCGGTTT 59.898 41.667 0.00 0.00 0.00 3.27
183 184 3.644738 TGTCTACTTCCTCCTTTTCGGTT 59.355 43.478 0.00 0.00 0.00 4.44
184 185 3.236896 TGTCTACTTCCTCCTTTTCGGT 58.763 45.455 0.00 0.00 0.00 4.69
185 186 3.510360 TCTGTCTACTTCCTCCTTTTCGG 59.490 47.826 0.00 0.00 0.00 4.30
186 187 4.487019 GTCTGTCTACTTCCTCCTTTTCG 58.513 47.826 0.00 0.00 0.00 3.46
187 188 4.322877 GGGTCTGTCTACTTCCTCCTTTTC 60.323 50.000 0.00 0.00 0.00 2.29
188 189 3.583526 GGGTCTGTCTACTTCCTCCTTTT 59.416 47.826 0.00 0.00 0.00 2.27
189 190 3.174779 GGGTCTGTCTACTTCCTCCTTT 58.825 50.000 0.00 0.00 0.00 3.11
190 191 2.111972 TGGGTCTGTCTACTTCCTCCTT 59.888 50.000 0.00 0.00 0.00 3.36
191 192 1.717077 TGGGTCTGTCTACTTCCTCCT 59.283 52.381 0.00 0.00 0.00 3.69
192 193 2.233305 TGGGTCTGTCTACTTCCTCC 57.767 55.000 0.00 0.00 0.00 4.30
193 194 5.934402 TTAATGGGTCTGTCTACTTCCTC 57.066 43.478 0.00 0.00 0.00 3.71
194 195 6.893020 ATTTAATGGGTCTGTCTACTTCCT 57.107 37.500 0.00 0.00 0.00 3.36
195 196 7.224167 CGTAATTTAATGGGTCTGTCTACTTCC 59.776 40.741 0.00 0.00 0.00 3.46
196 197 7.224167 CCGTAATTTAATGGGTCTGTCTACTTC 59.776 40.741 0.00 0.00 0.00 3.01
197 198 7.046033 CCGTAATTTAATGGGTCTGTCTACTT 58.954 38.462 0.00 0.00 0.00 2.24
198 199 6.381994 TCCGTAATTTAATGGGTCTGTCTACT 59.618 38.462 0.00 0.00 0.00 2.57
199 200 6.576185 TCCGTAATTTAATGGGTCTGTCTAC 58.424 40.000 0.00 0.00 0.00 2.59
207 208 4.725490 CCCATCTCCGTAATTTAATGGGT 58.275 43.478 12.29 0.00 45.45 4.51
223 224 2.708325 GGAGGACATTTCTAGCCCATCT 59.292 50.000 0.00 0.00 0.00 2.90
239 240 0.535335 CTTCCGTTCGGAATGGAGGA 59.465 55.000 28.01 16.32 46.72 3.71
250 257 2.607038 GGCATGAACCAAACTTCCGTTC 60.607 50.000 0.00 0.00 37.10 3.95
254 261 1.273327 CCAGGCATGAACCAAACTTCC 59.727 52.381 0.00 0.00 0.00 3.46
288 295 0.787787 CACCGCGATTTTCGTTCTCA 59.212 50.000 8.23 0.00 42.81 3.27
296 303 1.506262 GCATCCACACCGCGATTTT 59.494 52.632 8.23 0.00 0.00 1.82
345 352 8.592809 ACTTATTGAAATCAAACATGCCCTTAA 58.407 29.630 0.00 0.00 39.55 1.85
349 356 6.311200 GTGACTTATTGAAATCAAACATGCCC 59.689 38.462 0.00 0.00 39.55 5.36
350 357 6.311200 GGTGACTTATTGAAATCAAACATGCC 59.689 38.462 0.00 0.00 39.55 4.40
354 361 7.648142 GTCAGGTGACTTATTGAAATCAAACA 58.352 34.615 2.72 0.00 41.65 2.83
386 393 5.585047 AGTCACTGGTTTTAAGTCACTTGAC 59.415 40.000 0.00 0.77 45.08 3.18
387 394 5.741011 AGTCACTGGTTTTAAGTCACTTGA 58.259 37.500 0.00 0.00 21.62 3.02
388 395 6.436843 AAGTCACTGGTTTTAAGTCACTTG 57.563 37.500 0.00 0.00 37.55 3.16
389 396 9.841295 TTATAAGTCACTGGTTTTAAGTCACTT 57.159 29.630 0.00 0.00 41.22 3.16
390 397 9.490379 CTTATAAGTCACTGGTTTTAAGTCACT 57.510 33.333 4.18 0.00 29.23 3.41
391 398 9.269453 ACTTATAAGTCACTGGTTTTAAGTCAC 57.731 33.333 12.50 0.00 32.86 3.67
408 415 5.985911 ACCAAATAGGCGTGACTTATAAGT 58.014 37.500 18.05 18.05 43.14 2.24
409 416 6.315393 ACAACCAAATAGGCGTGACTTATAAG 59.685 38.462 11.05 11.05 43.14 1.73
410 417 6.174760 ACAACCAAATAGGCGTGACTTATAA 58.825 36.000 0.00 0.00 43.14 0.98
411 418 5.736813 ACAACCAAATAGGCGTGACTTATA 58.263 37.500 0.00 0.00 43.14 0.98
412 419 4.585879 ACAACCAAATAGGCGTGACTTAT 58.414 39.130 0.00 0.00 43.14 1.73
413 420 3.998341 GACAACCAAATAGGCGTGACTTA 59.002 43.478 0.00 0.00 43.14 2.24
414 421 2.812011 GACAACCAAATAGGCGTGACTT 59.188 45.455 0.00 0.00 43.14 3.01
415 422 2.224426 TGACAACCAAATAGGCGTGACT 60.224 45.455 0.00 0.00 43.14 3.41
416 423 2.095919 GTGACAACCAAATAGGCGTGAC 60.096 50.000 0.00 0.00 43.14 3.67
417 424 2.147958 GTGACAACCAAATAGGCGTGA 58.852 47.619 0.00 0.00 43.14 4.35
418 425 1.199097 GGTGACAACCAAATAGGCGTG 59.801 52.381 0.00 0.00 46.75 5.34
419 426 1.530323 GGTGACAACCAAATAGGCGT 58.470 50.000 0.00 0.00 46.75 5.68
429 436 1.628846 AGGTATGGTCAGGTGACAACC 59.371 52.381 12.09 14.14 46.47 3.77
430 437 3.335579 GAAGGTATGGTCAGGTGACAAC 58.664 50.000 12.09 6.68 46.47 3.32
431 438 2.304761 GGAAGGTATGGTCAGGTGACAA 59.695 50.000 12.09 0.66 46.47 3.18
432 439 1.906574 GGAAGGTATGGTCAGGTGACA 59.093 52.381 12.09 0.00 46.47 3.58
433 440 1.209747 GGGAAGGTATGGTCAGGTGAC 59.790 57.143 1.17 1.17 44.04 3.67
434 441 1.203376 TGGGAAGGTATGGTCAGGTGA 60.203 52.381 0.00 0.00 0.00 4.02
435 442 1.065418 GTGGGAAGGTATGGTCAGGTG 60.065 57.143 0.00 0.00 0.00 4.00
436 443 1.286248 GTGGGAAGGTATGGTCAGGT 58.714 55.000 0.00 0.00 0.00 4.00
437 444 0.546598 GGTGGGAAGGTATGGTCAGG 59.453 60.000 0.00 0.00 0.00 3.86
438 445 1.584724 AGGTGGGAAGGTATGGTCAG 58.415 55.000 0.00 0.00 0.00 3.51
439 446 1.633432 CAAGGTGGGAAGGTATGGTCA 59.367 52.381 0.00 0.00 0.00 4.02
440 447 1.633945 ACAAGGTGGGAAGGTATGGTC 59.366 52.381 0.00 0.00 0.00 4.02
441 448 1.755200 ACAAGGTGGGAAGGTATGGT 58.245 50.000 0.00 0.00 0.00 3.55
442 449 2.899303 AACAAGGTGGGAAGGTATGG 57.101 50.000 0.00 0.00 0.00 2.74
461 468 5.304871 GGTCCCACCACCTTTACATTAAAAA 59.695 40.000 0.00 0.00 38.42 1.94
462 469 4.833938 GGTCCCACCACCTTTACATTAAAA 59.166 41.667 0.00 0.00 38.42 1.52
463 470 4.409187 GGTCCCACCACCTTTACATTAAA 58.591 43.478 0.00 0.00 38.42 1.52
464 471 3.245336 GGGTCCCACCACCTTTACATTAA 60.245 47.826 1.78 0.00 41.02 1.40
465 472 2.309458 GGGTCCCACCACCTTTACATTA 59.691 50.000 1.78 0.00 41.02 1.90
466 473 1.076513 GGGTCCCACCACCTTTACATT 59.923 52.381 1.78 0.00 41.02 2.71
467 474 0.702316 GGGTCCCACCACCTTTACAT 59.298 55.000 1.78 0.00 41.02 2.29
468 475 1.770749 CGGGTCCCACCACCTTTACA 61.771 60.000 9.12 0.00 41.02 2.41
469 476 1.002990 CGGGTCCCACCACCTTTAC 60.003 63.158 9.12 0.00 41.02 2.01
470 477 2.897762 GCGGGTCCCACCACCTTTA 61.898 63.158 9.12 0.00 41.02 1.85
471 478 4.280019 GCGGGTCCCACCACCTTT 62.280 66.667 9.12 0.00 41.02 3.11
475 482 3.534054 TTTACGCGGGTCCCACCAC 62.534 63.158 12.47 0.00 41.02 4.16
476 483 2.734948 CTTTTACGCGGGTCCCACCA 62.735 60.000 12.47 0.00 41.02 4.17
477 484 2.032376 TTTTACGCGGGTCCCACC 59.968 61.111 12.47 0.00 37.60 4.61
478 485 2.036571 CCTTTTACGCGGGTCCCAC 61.037 63.158 12.47 0.00 0.00 4.61
479 486 2.348243 CCTTTTACGCGGGTCCCA 59.652 61.111 12.47 0.00 0.00 4.37
480 487 2.437180 CCCTTTTACGCGGGTCCC 60.437 66.667 12.47 0.00 35.65 4.46
481 488 2.437180 CCCCTTTTACGCGGGTCC 60.437 66.667 12.47 0.00 38.88 4.46
484 491 2.036571 GTCACCCCTTTTACGCGGG 61.037 63.158 12.47 1.69 43.05 6.13
485 492 0.604511 AAGTCACCCCTTTTACGCGG 60.605 55.000 12.47 0.00 0.00 6.46
486 493 2.083167 TAAGTCACCCCTTTTACGCG 57.917 50.000 3.53 3.53 0.00 6.01
487 494 5.181009 ACTTATAAGTCACCCCTTTTACGC 58.819 41.667 12.50 0.00 32.86 4.42
488 495 7.677454 AAACTTATAAGTCACCCCTTTTACG 57.323 36.000 18.28 0.00 38.57 3.18
491 498 9.650714 ACTTAAAACTTATAAGTCACCCCTTTT 57.349 29.630 18.28 14.40 38.85 2.27
492 499 9.650714 AACTTAAAACTTATAAGTCACCCCTTT 57.349 29.630 18.28 15.02 41.49 3.11
493 500 9.074576 CAACTTAAAACTTATAAGTCACCCCTT 57.925 33.333 18.28 5.47 41.49 3.95
494 501 7.668469 CCAACTTAAAACTTATAAGTCACCCCT 59.332 37.037 18.28 0.00 41.49 4.79
495 502 7.094075 CCCAACTTAAAACTTATAAGTCACCCC 60.094 40.741 18.28 0.00 41.49 4.95
496 503 7.094075 CCCCAACTTAAAACTTATAAGTCACCC 60.094 40.741 18.28 0.00 41.49 4.61
497 504 7.449395 ACCCCAACTTAAAACTTATAAGTCACC 59.551 37.037 18.28 0.00 41.49 4.02
498 505 8.294577 CACCCCAACTTAAAACTTATAAGTCAC 58.705 37.037 18.28 0.00 41.49 3.67
499 506 7.449086 CCACCCCAACTTAAAACTTATAAGTCA 59.551 37.037 18.28 4.72 41.49 3.41
500 507 7.666804 TCCACCCCAACTTAAAACTTATAAGTC 59.333 37.037 18.28 0.00 41.49 3.01
501 508 7.528675 TCCACCCCAACTTAAAACTTATAAGT 58.471 34.615 12.50 12.50 43.57 2.24
502 509 7.362660 GCTCCACCCCAACTTAAAACTTATAAG 60.363 40.741 11.05 11.05 36.62 1.73
503 510 6.434965 GCTCCACCCCAACTTAAAACTTATAA 59.565 38.462 0.00 0.00 0.00 0.98
504 511 5.947566 GCTCCACCCCAACTTAAAACTTATA 59.052 40.000 0.00 0.00 0.00 0.98
505 512 4.770531 GCTCCACCCCAACTTAAAACTTAT 59.229 41.667 0.00 0.00 0.00 1.73
506 513 4.146564 GCTCCACCCCAACTTAAAACTTA 58.853 43.478 0.00 0.00 0.00 2.24
507 514 2.963101 GCTCCACCCCAACTTAAAACTT 59.037 45.455 0.00 0.00 0.00 2.66
508 515 2.091555 TGCTCCACCCCAACTTAAAACT 60.092 45.455 0.00 0.00 0.00 2.66
509 516 2.312390 TGCTCCACCCCAACTTAAAAC 58.688 47.619 0.00 0.00 0.00 2.43
510 517 2.696187 GTTGCTCCACCCCAACTTAAAA 59.304 45.455 0.00 0.00 38.55 1.52
511 518 2.091555 AGTTGCTCCACCCCAACTTAAA 60.092 45.455 0.56 0.00 46.86 1.52
512 519 1.497286 AGTTGCTCCACCCCAACTTAA 59.503 47.619 0.56 0.00 46.86 1.85
513 520 1.145571 AGTTGCTCCACCCCAACTTA 58.854 50.000 0.56 0.00 46.86 2.24
514 521 1.930520 AGTTGCTCCACCCCAACTT 59.069 52.632 0.56 0.00 46.86 2.66
515 522 3.674278 AGTTGCTCCACCCCAACT 58.326 55.556 0.56 0.56 44.86 3.16
516 523 1.818674 CATAAGTTGCTCCACCCCAAC 59.181 52.381 0.00 0.00 41.13 3.77
517 524 1.707989 TCATAAGTTGCTCCACCCCAA 59.292 47.619 0.00 0.00 0.00 4.12
518 525 1.004277 GTCATAAGTTGCTCCACCCCA 59.996 52.381 0.00 0.00 0.00 4.96
519 526 1.282157 AGTCATAAGTTGCTCCACCCC 59.718 52.381 0.00 0.00 0.00 4.95
520 527 2.789409 AGTCATAAGTTGCTCCACCC 57.211 50.000 0.00 0.00 0.00 4.61
521 528 7.484035 CTTATAAGTCATAAGTTGCTCCACC 57.516 40.000 4.18 0.00 40.84 4.61
543 550 9.178758 GACTCAATTTATAAGTCATCCCAACTT 57.821 33.333 0.00 0.00 39.36 2.66
544 551 8.552296 AGACTCAATTTATAAGTCATCCCAACT 58.448 33.333 4.73 0.00 41.49 3.16
545 552 8.616076 CAGACTCAATTTATAAGTCATCCCAAC 58.384 37.037 4.73 0.00 41.49 3.77
546 553 8.328758 ACAGACTCAATTTATAAGTCATCCCAA 58.671 33.333 4.73 0.00 41.49 4.12
547 554 7.861629 ACAGACTCAATTTATAAGTCATCCCA 58.138 34.615 4.73 0.00 41.49 4.37
548 555 8.738645 AACAGACTCAATTTATAAGTCATCCC 57.261 34.615 4.73 0.00 41.49 3.85
549 556 9.994432 CAAACAGACTCAATTTATAAGTCATCC 57.006 33.333 4.73 0.00 41.49 3.51
550 557 9.994432 CCAAACAGACTCAATTTATAAGTCATC 57.006 33.333 4.73 0.00 41.49 2.92
551 558 8.462016 GCCAAACAGACTCAATTTATAAGTCAT 58.538 33.333 4.73 0.00 41.49 3.06
552 559 7.446931 TGCCAAACAGACTCAATTTATAAGTCA 59.553 33.333 4.73 0.00 41.49 3.41
553 560 7.816640 TGCCAAACAGACTCAATTTATAAGTC 58.183 34.615 0.00 0.00 39.76 3.01
554 561 7.759489 TGCCAAACAGACTCAATTTATAAGT 57.241 32.000 0.00 0.00 0.00 2.24
555 562 9.474920 TTTTGCCAAACAGACTCAATTTATAAG 57.525 29.630 0.00 0.00 0.00 1.73
556 563 9.995003 ATTTTGCCAAACAGACTCAATTTATAA 57.005 25.926 0.00 0.00 0.00 0.98
558 565 9.995003 TTATTTTGCCAAACAGACTCAATTTAT 57.005 25.926 0.00 0.00 0.00 1.40
559 566 9.474920 CTTATTTTGCCAAACAGACTCAATTTA 57.525 29.630 0.00 0.00 0.00 1.40
560 567 7.986889 ACTTATTTTGCCAAACAGACTCAATTT 59.013 29.630 0.00 0.00 0.00 1.82
561 568 7.500141 ACTTATTTTGCCAAACAGACTCAATT 58.500 30.769 0.00 0.00 0.00 2.32
562 569 7.054491 ACTTATTTTGCCAAACAGACTCAAT 57.946 32.000 0.00 0.00 0.00 2.57
563 570 6.096141 TGACTTATTTTGCCAAACAGACTCAA 59.904 34.615 0.00 0.00 0.00 3.02
564 571 5.592282 TGACTTATTTTGCCAAACAGACTCA 59.408 36.000 0.00 0.00 0.00 3.41
565 572 5.915196 GTGACTTATTTTGCCAAACAGACTC 59.085 40.000 0.00 0.00 0.00 3.36
566 573 5.594317 AGTGACTTATTTTGCCAAACAGACT 59.406 36.000 0.00 0.00 0.00 3.24
567 574 5.831997 AGTGACTTATTTTGCCAAACAGAC 58.168 37.500 0.00 0.00 0.00 3.51
568 575 6.463995 AAGTGACTTATTTTGCCAAACAGA 57.536 33.333 0.00 0.00 0.00 3.41
569 576 7.538303 AAAAGTGACTTATTTTGCCAAACAG 57.462 32.000 0.00 0.00 0.00 3.16
570 577 7.913674 AAAAAGTGACTTATTTTGCCAAACA 57.086 28.000 0.00 0.00 0.00 2.83
601 608 9.743057 CAAACAAATCACCAACTTATAAGTCAA 57.257 29.630 18.28 3.69 38.57 3.18
602 609 8.356657 CCAAACAAATCACCAACTTATAAGTCA 58.643 33.333 18.28 1.80 38.57 3.41
603 610 8.573035 TCCAAACAAATCACCAACTTATAAGTC 58.427 33.333 18.28 0.00 38.57 3.01
604 611 8.472007 TCCAAACAAATCACCAACTTATAAGT 57.528 30.769 12.50 12.50 42.04 2.24
605 612 9.191995 GTTCCAAACAAATCACCAACTTATAAG 57.808 33.333 11.05 11.05 0.00 1.73
606 613 8.145122 GGTTCCAAACAAATCACCAACTTATAA 58.855 33.333 0.00 0.00 0.00 0.98
607 614 7.287927 TGGTTCCAAACAAATCACCAACTTATA 59.712 33.333 0.00 0.00 31.24 0.98
608 615 6.098982 TGGTTCCAAACAAATCACCAACTTAT 59.901 34.615 0.00 0.00 31.24 1.73
609 616 5.422331 TGGTTCCAAACAAATCACCAACTTA 59.578 36.000 0.00 0.00 31.24 2.24
610 617 4.223923 TGGTTCCAAACAAATCACCAACTT 59.776 37.500 0.00 0.00 31.24 2.66
611 618 3.772025 TGGTTCCAAACAAATCACCAACT 59.228 39.130 0.00 0.00 31.24 3.16
612 619 4.130286 TGGTTCCAAACAAATCACCAAC 57.870 40.909 0.00 0.00 31.24 3.77
613 620 4.826274 TTGGTTCCAAACAAATCACCAA 57.174 36.364 1.42 0.00 41.05 3.67
614 621 4.764172 CTTTGGTTCCAAACAAATCACCA 58.236 39.130 12.29 0.00 36.16 4.17
615 622 3.559655 GCTTTGGTTCCAAACAAATCACC 59.440 43.478 12.29 0.00 36.16 4.02
616 623 3.559655 GGCTTTGGTTCCAAACAAATCAC 59.440 43.478 12.29 0.00 36.16 3.06
617 624 3.454082 AGGCTTTGGTTCCAAACAAATCA 59.546 39.130 12.29 0.00 36.16 2.57
618 625 4.071961 AGGCTTTGGTTCCAAACAAATC 57.928 40.909 12.29 0.00 36.16 2.17
619 626 5.130311 AGTTAGGCTTTGGTTCCAAACAAAT 59.870 36.000 12.29 3.32 36.16 2.32
620 627 4.468153 AGTTAGGCTTTGGTTCCAAACAAA 59.532 37.500 12.29 0.10 35.49 2.83
621 628 4.027437 AGTTAGGCTTTGGTTCCAAACAA 58.973 39.130 12.29 0.00 33.15 2.83
622 629 3.383185 CAGTTAGGCTTTGGTTCCAAACA 59.617 43.478 12.29 0.00 33.15 2.83
623 630 3.798889 GCAGTTAGGCTTTGGTTCCAAAC 60.799 47.826 12.29 9.62 33.15 2.93
624 631 2.364002 GCAGTTAGGCTTTGGTTCCAAA 59.636 45.455 14.99 14.99 35.09 3.28
625 632 1.960689 GCAGTTAGGCTTTGGTTCCAA 59.039 47.619 0.00 0.00 0.00 3.53
626 633 1.133637 TGCAGTTAGGCTTTGGTTCCA 60.134 47.619 0.00 0.00 34.04 3.53
627 634 1.616159 TGCAGTTAGGCTTTGGTTCC 58.384 50.000 0.00 0.00 34.04 3.62
628 635 2.623416 ACTTGCAGTTAGGCTTTGGTTC 59.377 45.455 0.00 0.00 34.04 3.62
629 636 2.362077 CACTTGCAGTTAGGCTTTGGTT 59.638 45.455 0.00 0.00 34.04 3.67
630 637 1.956477 CACTTGCAGTTAGGCTTTGGT 59.044 47.619 0.00 0.00 34.04 3.67
631 638 1.336240 GCACTTGCAGTTAGGCTTTGG 60.336 52.381 0.00 0.00 41.59 3.28
632 639 2.056094 GCACTTGCAGTTAGGCTTTG 57.944 50.000 0.00 0.00 41.59 2.77
644 651 0.109781 CGTATGGTGGTTGCACTTGC 60.110 55.000 0.00 0.00 42.50 4.01
645 652 1.464608 CTCGTATGGTGGTTGCACTTG 59.535 52.381 0.00 0.00 0.00 3.16
646 653 1.808411 CTCGTATGGTGGTTGCACTT 58.192 50.000 0.00 0.00 0.00 3.16
647 654 0.673644 GCTCGTATGGTGGTTGCACT 60.674 55.000 0.00 0.00 0.00 4.40
648 655 0.673644 AGCTCGTATGGTGGTTGCAC 60.674 55.000 0.00 0.00 0.00 4.57
649 656 0.899019 TAGCTCGTATGGTGGTTGCA 59.101 50.000 0.00 0.00 0.00 4.08
650 657 1.134788 ACTAGCTCGTATGGTGGTTGC 60.135 52.381 0.00 0.00 0.00 4.17
651 658 2.961526 ACTAGCTCGTATGGTGGTTG 57.038 50.000 0.00 0.00 0.00 3.77
652 659 2.167900 GGAACTAGCTCGTATGGTGGTT 59.832 50.000 0.00 6.51 40.74 3.67
653 660 1.755380 GGAACTAGCTCGTATGGTGGT 59.245 52.381 0.00 0.00 0.00 4.16
654 661 1.269102 CGGAACTAGCTCGTATGGTGG 60.269 57.143 0.00 0.00 0.00 4.61
655 662 1.269102 CCGGAACTAGCTCGTATGGTG 60.269 57.143 0.00 0.00 0.00 4.17
747 754 0.804156 GAGCTAACTCCACTGCTCGC 60.804 60.000 0.00 0.00 41.67 5.03
750 757 1.893786 CCGAGCTAACTCCACTGCT 59.106 57.895 0.00 0.00 40.03 4.24
762 774 3.394836 GAGGAACCCTGCCGAGCT 61.395 66.667 0.00 0.00 31.76 4.09
763 775 4.475135 GGAGGAACCCTGCCGAGC 62.475 72.222 0.00 0.00 35.89 5.03
764 776 2.294078 AAGGAGGAACCCTGCCGAG 61.294 63.158 0.72 0.00 43.25 4.63
765 777 2.203938 AAGGAGGAACCCTGCCGA 60.204 61.111 0.72 0.00 43.25 5.54
767 779 2.361737 GCAAGGAGGAACCCTGCC 60.362 66.667 0.72 0.00 46.99 4.85
769 781 1.001641 CAGGCAAGGAGGAACCCTG 60.002 63.158 0.00 0.00 40.05 4.45
770 782 2.911926 GCAGGCAAGGAGGAACCCT 61.912 63.158 0.00 0.00 40.05 4.34
772 784 2.361737 GGCAGGCAAGGAGGAACC 60.362 66.667 0.00 0.00 39.35 3.62
774 786 2.759114 CAGGCAGGCAAGGAGGAA 59.241 61.111 0.00 0.00 0.00 3.36
775 787 4.039092 GCAGGCAGGCAAGGAGGA 62.039 66.667 0.00 0.00 0.00 3.71
804 816 1.361204 TGGATTTCCAGACTGAGCCA 58.639 50.000 3.32 0.00 42.01 4.75
858 870 1.878522 GCGCGTCCATGTACCTCAG 60.879 63.158 8.43 0.00 0.00 3.35
859 871 2.183300 GCGCGTCCATGTACCTCA 59.817 61.111 8.43 0.00 0.00 3.86
860 872 2.585247 GGCGCGTCCATGTACCTC 60.585 66.667 8.43 0.00 34.01 3.85
861 873 2.949909 TTGGCGCGTCCATGTACCT 61.950 57.895 20.23 0.00 46.04 3.08
862 874 2.435234 TTGGCGCGTCCATGTACC 60.435 61.111 20.23 5.70 46.04 3.34
863 875 1.740296 AGTTGGCGCGTCCATGTAC 60.740 57.895 20.23 15.82 46.04 2.90
864 876 1.739929 CAGTTGGCGCGTCCATGTA 60.740 57.895 20.23 5.85 46.04 2.29
908 979 7.013083 GGAAAACGATGTGATCTAGGAGTAGTA 59.987 40.741 0.00 0.00 0.00 1.82
1213 1312 2.681666 CTTACAAGCGACGCGACG 59.318 61.111 25.73 25.73 0.00 5.12
1214 1313 2.390670 GCTTACAAGCGACGCGAC 59.609 61.111 15.93 5.54 42.88 5.19
1245 1349 4.537433 GCCGGAGCAAGGCGAGAT 62.537 66.667 5.05 0.00 45.58 2.75
1266 1370 1.657751 GCCTCCAAGAACCGCCAATC 61.658 60.000 0.00 0.00 0.00 2.67
1272 1384 1.537202 CAAGAAAGCCTCCAAGAACCG 59.463 52.381 0.00 0.00 0.00 4.44
1274 1386 3.004839 GGAACAAGAAAGCCTCCAAGAAC 59.995 47.826 0.00 0.00 0.00 3.01
1290 1402 9.528489 GCATAATAAATATAGGGGAAGGAACAA 57.472 33.333 0.00 0.00 0.00 2.83
1291 1403 7.827236 CGCATAATAAATATAGGGGAAGGAACA 59.173 37.037 0.00 0.00 0.00 3.18
1292 1404 7.201705 GCGCATAATAAATATAGGGGAAGGAAC 60.202 40.741 0.30 0.00 0.00 3.62
1293 1405 6.826741 GCGCATAATAAATATAGGGGAAGGAA 59.173 38.462 0.30 0.00 0.00 3.36
1309 1421 2.428187 CACCCCGGGCGCATAATA 59.572 61.111 17.73 0.00 0.00 0.98
1339 1451 1.810030 CTCCTTAGCCGTCAACGCC 60.810 63.158 0.00 0.00 38.18 5.68
1375 1487 1.569072 GCCATTCCTCTTCCCCCTAAA 59.431 52.381 0.00 0.00 0.00 1.85
1384 1496 2.187946 CCTCGCGCCATTCCTCTT 59.812 61.111 0.00 0.00 0.00 2.85
1581 1694 4.007644 TGAGGTGCTGCTCGTGGG 62.008 66.667 0.00 0.00 0.00 4.61
1680 1796 2.942796 ATCAGCCAGTCGAACGCCA 61.943 57.895 0.00 0.00 0.00 5.69
1802 1921 2.270205 CTGGGCCTGCCAGTACAG 59.730 66.667 10.86 4.22 37.98 2.74
2006 2128 6.183360 CCAACAAAAGTTCAGTTCAGATGAGT 60.183 38.462 0.00 0.00 0.00 3.41
2014 2136 3.130340 TCAGGCCAACAAAAGTTCAGTTC 59.870 43.478 5.01 0.00 0.00 3.01
2151 2273 3.271250 GCCCATCTTCTTCTGGCAA 57.729 52.632 0.00 0.00 41.76 4.52
2212 2334 2.016905 ACAGTAGTGAGGGCTTCAGT 57.983 50.000 11.93 11.93 42.19 3.41
2299 2424 9.330063 GAATCCAGATCACAACTCAACATAATA 57.670 33.333 0.00 0.00 0.00 0.98
2303 2428 4.946157 GGAATCCAGATCACAACTCAACAT 59.054 41.667 0.00 0.00 0.00 2.71
2359 2484 6.929049 AGACAATTTGTTAGAGAATCACACGA 59.071 34.615 3.08 0.00 37.82 4.35
2360 2485 7.121974 AGACAATTTGTTAGAGAATCACACG 57.878 36.000 3.08 0.00 37.82 4.49
2375 2500 1.782569 CACACGCAGCAAGACAATTTG 59.217 47.619 0.00 0.00 0.00 2.32
2393 2518 7.462724 GCATAATCTACAAACCAAAAATCGCAC 60.463 37.037 0.00 0.00 0.00 5.34
2424 2552 5.658634 AGCCACTGTATACTGATCAAGAAGA 59.341 40.000 15.84 0.00 0.00 2.87
2571 2699 4.074259 GGTATAGCACATCATTCATGCCA 58.926 43.478 0.00 0.00 40.33 4.92
2609 2737 4.019792 ACACATAATCAGTGAAGCACCA 57.980 40.909 0.00 0.00 40.16 4.17
2614 2742 8.310406 TGACAAACTACACATAATCAGTGAAG 57.690 34.615 0.00 0.00 40.16 3.02
2648 2776 9.862585 CCATTCAAAACATACTTTTAAAACAGC 57.137 29.630 0.00 0.00 0.00 4.40
2783 2915 3.181464 GGGCTAGGGAATCAAGTGAGTAC 60.181 52.174 0.00 0.00 0.00 2.73
2808 2940 6.822170 TGATGATGCTGAATTATCATAGGAGC 59.178 38.462 0.00 0.00 42.43 4.70
2890 3023 9.736414 ATATACGACATAGTAGTATGAGGTGTT 57.264 33.333 21.86 12.93 38.76 3.32
3121 3547 9.403583 GTATTGGAATGGAAACCTGAAATACTA 57.596 33.333 0.00 0.00 0.00 1.82
3133 3559 5.830457 TGGAATATGCGTATTGGAATGGAAA 59.170 36.000 15.88 0.00 30.75 3.13
3289 3715 5.412594 TCTGACCTGCTAACTTTTATGCTTG 59.587 40.000 0.00 0.00 0.00 4.01
3308 3735 6.998802 AGAGTAGCCAATATGGTAATCTGAC 58.001 40.000 2.55 0.00 40.46 3.51
3334 3761 6.581712 ACTAATGCCAATGTTTTCTGTTTGT 58.418 32.000 0.00 0.00 0.00 2.83
3789 4218 8.633561 CATCGATATTAGGCATCCAGAGTTATA 58.366 37.037 0.00 0.00 0.00 0.98
3790 4219 7.343057 TCATCGATATTAGGCATCCAGAGTTAT 59.657 37.037 0.00 0.00 0.00 1.89
3791 4220 6.663523 TCATCGATATTAGGCATCCAGAGTTA 59.336 38.462 0.00 0.00 0.00 2.24
3792 4221 5.481824 TCATCGATATTAGGCATCCAGAGTT 59.518 40.000 0.00 0.00 0.00 3.01
3868 4297 1.750399 CACTTTGGATCGGCCCTGG 60.750 63.158 0.00 0.00 34.97 4.45
3885 4314 1.613925 ACTCAGAGTCGCAGCTAAACA 59.386 47.619 0.00 0.00 0.00 2.83
4000 4429 1.598882 TACCGCTTGCATTTGACACA 58.401 45.000 0.00 0.00 0.00 3.72
4348 5153 6.592798 TTTAGAACTACAACCTTCACAACG 57.407 37.500 0.00 0.00 0.00 4.10
4413 5219 6.036735 CGCCAAGTTTCGAAAAGGATTCTATA 59.963 38.462 22.36 0.00 0.00 1.31
4627 5433 6.097129 TGCTCTGATATGAATTTCATGCCAAA 59.903 34.615 19.81 2.14 37.70 3.28
4628 5434 5.595133 TGCTCTGATATGAATTTCATGCCAA 59.405 36.000 19.81 2.50 37.70 4.52
4669 5475 4.819769 ACCATTTGTCTGCGCAAAAATAT 58.180 34.783 13.05 7.16 41.03 1.28
4821 5627 3.625764 TCCACAAAATTGACGGCTATAGC 59.374 43.478 16.78 16.78 41.14 2.97
4825 5631 2.227865 GCTTCCACAAAATTGACGGCTA 59.772 45.455 0.00 0.00 0.00 3.93
4832 5638 5.799681 AAACACTTGCTTCCACAAAATTG 57.200 34.783 0.00 0.00 0.00 2.32
4875 5681 2.828520 TGACTGAGAGTAAAGAGCCTGG 59.171 50.000 0.00 0.00 0.00 4.45
4909 5715 3.553511 CAGTGATAGGTGATCGTTTGAGC 59.446 47.826 0.00 0.00 37.38 4.26
4916 5722 3.496130 GGAATTGCAGTGATAGGTGATCG 59.504 47.826 0.00 0.00 37.38 3.69
4923 5729 4.627611 CAACTGGGAATTGCAGTGATAG 57.372 45.455 0.00 0.00 0.00 2.08
4941 5747 1.025113 GCTTCGGTCCTTAGGGCAAC 61.025 60.000 4.86 0.00 0.00 4.17
5043 5849 6.979817 TCTGAATTGTGAACTCAACAAATTGG 59.020 34.615 0.00 0.00 36.39 3.16
5044 5850 7.488792 TGTCTGAATTGTGAACTCAACAAATTG 59.511 33.333 0.00 0.00 37.14 2.32
5315 6127 1.338200 GCAGTGATCCAGTCCGAAACT 60.338 52.381 0.00 0.00 39.44 2.66
5321 6133 1.134670 GGTACTGCAGTGATCCAGTCC 60.135 57.143 29.57 13.32 41.13 3.85
5348 6160 2.487934 GTCATCAGCTGTGAGTTGTGT 58.512 47.619 14.67 0.00 35.66 3.72
5456 6268 2.598099 TGGACGGCGGTGTCTGTA 60.598 61.111 13.24 0.00 38.91 2.74
5594 6406 2.137528 TGCGGACAAGGTGAGGTCA 61.138 57.895 0.00 0.00 35.74 4.02
5901 6783 6.580791 CGTGTATTATTCTGGGTTTGTTTGTG 59.419 38.462 0.00 0.00 0.00 3.33
5911 6793 1.420138 AGGGGCGTGTATTATTCTGGG 59.580 52.381 0.00 0.00 0.00 4.45
6004 6886 8.383318 ACTATCGCATTTAGCTGTAATTTCAT 57.617 30.769 0.00 0.00 42.61 2.57
6015 6897 6.787085 AGAAACCATACTATCGCATTTAGC 57.213 37.500 0.00 0.00 40.87 3.09
6022 6904 4.570772 TCAGCAAAGAAACCATACTATCGC 59.429 41.667 0.00 0.00 0.00 4.58
6030 6912 6.715347 AACTTTACTCAGCAAAGAAACCAT 57.285 33.333 4.25 0.00 36.65 3.55
6032 6914 7.260558 AGTAACTTTACTCAGCAAAGAAACC 57.739 36.000 4.25 0.00 39.72 3.27
6042 6924 6.761714 ACACAACCAGAAGTAACTTTACTCAG 59.238 38.462 2.13 0.00 42.86 3.35
6098 6980 9.628746 GCATTTTCAACATATATATGCACATCA 57.371 29.630 20.46 4.14 37.45 3.07
6179 7062 3.450904 ACTTGCCCTGACTACTTATCCA 58.549 45.455 0.00 0.00 0.00 3.41
6189 7072 0.875059 GTGCTGTTACTTGCCCTGAC 59.125 55.000 0.00 0.00 0.00 3.51
6202 7085 3.914426 ATTCGGAAGATTAGGTGCTGT 57.086 42.857 0.00 0.00 41.60 4.40
6291 7174 4.928981 AGGCACTGATTCCTCCCT 57.071 55.556 0.00 0.00 37.18 4.20
6371 7254 0.399233 GGTCAGGCCCCTCTAGACAT 60.399 60.000 0.00 0.00 0.00 3.06
6372 7255 1.001760 GGTCAGGCCCCTCTAGACA 59.998 63.158 0.00 0.00 0.00 3.41
6397 7280 7.557719 CCAGGAGATAGGATTTTCTTTTGCTTA 59.442 37.037 0.00 0.00 0.00 3.09
6542 7427 5.709631 TCTGCCTTGTTGCTGTATTCATTTA 59.290 36.000 0.00 0.00 0.00 1.40
6571 7457 1.531149 CGTATGATTGGGAATGCGGAC 59.469 52.381 0.00 0.00 0.00 4.79
6646 7533 1.147817 AGAATGGAGGCCTTGTGGTTT 59.852 47.619 6.77 0.00 35.27 3.27
6681 7568 8.502105 TGATGATATGTGGATTATGATGAAGC 57.498 34.615 0.00 0.00 0.00 3.86
6726 7613 5.221244 GGCAAACATGGTTACAGTTCTTCTT 60.221 40.000 0.00 0.00 0.00 2.52
6727 7614 4.278419 GGCAAACATGGTTACAGTTCTTCT 59.722 41.667 0.00 0.00 0.00 2.85
6728 7615 4.037446 TGGCAAACATGGTTACAGTTCTTC 59.963 41.667 0.00 0.00 0.00 2.87



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.