Multiple sequence alignment - TraesCS6A01G165300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G165300 chr6A 100.000 3854 0 0 845 4698 162910765 162914618 0.000000e+00 7118.0
1 TraesCS6A01G165300 chr6A 90.183 1477 110 13 3115 4567 171740216 171741681 0.000000e+00 1892.0
2 TraesCS6A01G165300 chr6A 89.583 1152 51 18 1209 2301 169226627 169225486 0.000000e+00 1399.0
3 TraesCS6A01G165300 chr6A 88.069 1165 54 18 1198 2301 171738845 171739985 0.000000e+00 1303.0
4 TraesCS6A01G165300 chr6A 88.318 856 79 12 3720 4556 169220597 169219744 0.000000e+00 1007.0
5 TraesCS6A01G165300 chr6A 85.997 657 81 9 2463 3114 60427230 60427880 0.000000e+00 693.0
6 TraesCS6A01G165300 chr6A 100.000 365 0 0 1 365 162909921 162910285 0.000000e+00 675.0
7 TraesCS6A01G165300 chr6A 92.257 452 22 2 3286 3735 169221052 169220612 3.090000e-176 628.0
8 TraesCS6A01G165300 chr6A 97.386 306 6 2 845 1150 580321922 580322225 1.940000e-143 520.0
9 TraesCS6A01G165300 chr6A 93.464 153 10 0 2307 2459 169225399 169225247 1.320000e-55 228.0
10 TraesCS6A01G165300 chr6A 92.308 156 12 0 2304 2459 171740069 171740224 6.120000e-54 222.0
11 TraesCS6A01G165300 chr6A 92.754 138 10 0 4561 4698 169219692 169219555 2.870000e-47 200.0
12 TraesCS6A01G165300 chr6A 92.029 138 9 1 4561 4698 171741717 171741852 4.800000e-45 193.0
13 TraesCS6A01G165300 chr6A 100.000 89 0 0 277 365 72967927 72967839 1.050000e-36 165.0
14 TraesCS6A01G165300 chr6A 100.000 89 0 0 277 365 201453027 201453115 1.050000e-36 165.0
15 TraesCS6A01G165300 chr6A 81.529 157 21 7 4361 4513 169212272 169212120 6.380000e-24 122.0
16 TraesCS6A01G165300 chr6D 89.369 1157 52 29 1209 2301 131032783 131031634 0.000000e+00 1389.0
17 TraesCS6A01G165300 chr6D 89.252 1163 54 29 1203 2301 146506693 146507848 0.000000e+00 1389.0
18 TraesCS6A01G165300 chr6D 87.852 1136 83 29 1209 2301 130213563 130212440 0.000000e+00 1282.0
19 TraesCS6A01G165300 chr6D 88.175 871 81 12 3720 4570 131030779 131029911 0.000000e+00 1018.0
20 TraesCS6A01G165300 chr6D 87.472 878 77 17 3720 4567 146508704 146509578 0.000000e+00 981.0
21 TraesCS6A01G165300 chr6D 93.740 623 26 2 3115 3735 130212209 130211598 0.000000e+00 922.0
22 TraesCS6A01G165300 chr6D 93.740 623 26 2 3115 3735 131031404 131030793 0.000000e+00 922.0
23 TraesCS6A01G165300 chr6D 93.226 620 29 2 3115 3732 146508079 146508687 0.000000e+00 900.0
24 TraesCS6A01G165300 chr6D 86.486 407 46 4 3720 4117 130211582 130211176 5.580000e-119 438.0
25 TraesCS6A01G165300 chr6D 87.861 346 27 6 4232 4570 130211062 130210725 4.410000e-105 392.0
26 TraesCS6A01G165300 chr6D 97.101 138 4 0 4561 4698 131029871 131029734 2.830000e-57 233.0
27 TraesCS6A01G165300 chr6D 92.949 156 11 0 2304 2459 146507932 146508087 1.320000e-55 228.0
28 TraesCS6A01G165300 chr6D 94.928 138 7 0 4561 4698 130210685 130210548 2.850000e-52 217.0
29 TraesCS6A01G165300 chr6D 92.157 153 12 0 2307 2459 130212353 130212201 2.850000e-52 217.0
30 TraesCS6A01G165300 chr6D 94.203 138 8 0 4561 4698 146509621 146509758 1.320000e-50 211.0
31 TraesCS6A01G165300 chr6D 91.503 153 12 1 2307 2459 131031547 131031396 4.760000e-50 209.0
32 TraesCS6A01G165300 chr6D 89.062 64 5 1 4450 4513 132685117 132685178 1.400000e-10 78.7
33 TraesCS6A01G165300 chr6B 88.579 1182 70 27 1177 2306 213521254 213522422 0.000000e+00 1375.0
34 TraesCS6A01G165300 chr6B 89.110 1157 55 31 1209 2301 257782952 257781803 0.000000e+00 1373.0
35 TraesCS6A01G165300 chr6B 88.918 1146 67 12 1209 2301 228757465 228756327 0.000000e+00 1358.0
36 TraesCS6A01G165300 chr6B 88.448 1160 70 15 1198 2301 230602469 230603620 0.000000e+00 1341.0
37 TraesCS6A01G165300 chr6B 86.836 866 87 18 3720 4567 230604478 230605334 0.000000e+00 942.0
38 TraesCS6A01G165300 chr6B 87.607 815 74 13 3781 4570 257780898 257780086 0.000000e+00 920.0
39 TraesCS6A01G165300 chr6B 93.419 623 28 2 3115 3735 257781572 257780961 0.000000e+00 911.0
40 TraesCS6A01G165300 chr6B 92.605 622 31 3 3115 3732 228756096 228755486 0.000000e+00 880.0
41 TraesCS6A01G165300 chr6B 92.271 621 34 3 3115 3732 230603851 230604460 0.000000e+00 869.0
42 TraesCS6A01G165300 chr6B 84.046 865 88 23 3720 4567 228755468 228754637 0.000000e+00 787.0
43 TraesCS6A01G165300 chr6B 93.720 414 26 0 3115 3528 213535111 213535524 5.160000e-174 621.0
44 TraesCS6A01G165300 chr6B 93.352 361 20 3 2758 3114 664306629 664306269 8.950000e-147 531.0
45 TraesCS6A01G165300 chr6B 98.125 160 3 0 2591 2750 664307927 664307768 3.580000e-71 279.0
46 TraesCS6A01G165300 chr6B 93.590 156 10 0 2304 2459 230603704 230603859 2.830000e-57 233.0
47 TraesCS6A01G165300 chr6B 92.810 153 11 0 2307 2459 228756240 228756088 6.120000e-54 222.0
48 TraesCS6A01G165300 chr6B 92.810 153 11 0 2307 2459 257781716 257781564 6.120000e-54 222.0
49 TraesCS6A01G165300 chr6B 94.928 138 7 0 4561 4698 230605377 230605514 2.850000e-52 217.0
50 TraesCS6A01G165300 chr6B 94.928 138 7 0 4561 4698 257780046 257779909 2.850000e-52 217.0
51 TraesCS6A01G165300 chr6B 92.029 138 11 0 4561 4698 228754601 228754464 1.330000e-45 195.0
52 TraesCS6A01G165300 chr5B 90.339 766 51 6 3115 3870 84884057 84883305 0.000000e+00 983.0
53 TraesCS6A01G165300 chr5B 87.883 718 70 9 3867 4567 84883226 84882509 0.000000e+00 828.0
54 TraesCS6A01G165300 chr5B 97.712 306 7 0 845 1150 528367584 528367279 1.160000e-145 527.0
55 TraesCS6A01G165300 chr5B 92.466 292 22 0 2015 2306 84884574 84884283 7.270000e-113 418.0
56 TraesCS6A01G165300 chr5B 94.872 156 8 0 2304 2459 84884204 84884049 1.310000e-60 244.0
57 TraesCS6A01G165300 chr5B 93.985 133 8 0 4561 4693 84882473 84882341 7.970000e-48 202.0
58 TraesCS6A01G165300 chr5B 89.506 162 4 4 1248 1397 84890690 84890530 4.800000e-45 193.0
59 TraesCS6A01G165300 chr5B 100.000 89 0 0 277 365 528367967 528367879 1.050000e-36 165.0
60 TraesCS6A01G165300 chr5B 96.970 66 2 0 2459 2524 679387469 679387534 1.380000e-20 111.0
61 TraesCS6A01G165300 chr7A 85.693 657 83 9 2463 3114 419013170 419012520 0.000000e+00 682.0
62 TraesCS6A01G165300 chr2A 84.347 658 91 10 2463 3114 705993660 705994311 6.630000e-178 634.0
63 TraesCS6A01G165300 chr2A 84.332 434 59 7 2463 2892 36932874 36933302 2.620000e-112 416.0
64 TraesCS6A01G165300 chr2A 94.737 76 4 0 3039 3114 36933299 36933374 8.260000e-23 119.0
65 TraesCS6A01G165300 chr4A 98.680 303 4 0 845 1147 403171916 403172218 5.350000e-149 538.0
66 TraesCS6A01G165300 chr4A 92.056 214 15 2 1 214 497804983 497804772 2.750000e-77 300.0
67 TraesCS6A01G165300 chr4A 90.741 216 20 0 1 216 483327001 483327216 5.950000e-74 289.0
68 TraesCS6A01G165300 chr3A 98.680 303 4 0 845 1147 219342777 219342475 5.350000e-149 538.0
69 TraesCS6A01G165300 chr3A 97.764 313 5 1 845 1155 334784798 334784486 5.350000e-149 538.0
70 TraesCS6A01G165300 chr3A 97.682 302 3 1 846 1147 219340788 219340491 2.510000e-142 516.0
71 TraesCS6A01G165300 chr2B 98.680 303 4 0 845 1147 702728155 702728457 5.350000e-149 538.0
72 TraesCS6A01G165300 chr2B 100.000 89 0 0 277 365 702727662 702727750 1.050000e-36 165.0
73 TraesCS6A01G165300 chr2B 100.000 89 0 0 277 365 702728014 702728102 1.050000e-36 165.0
74 TraesCS6A01G165300 chr2B 100.000 89 0 0 277 365 703971767 703971855 1.050000e-36 165.0
75 TraesCS6A01G165300 chr1A 97.705 305 6 1 845 1148 472948709 472948405 1.500000e-144 523.0
76 TraesCS6A01G165300 chr1A 96.486 313 7 3 845 1154 492810264 492809953 9.010000e-142 514.0
77 TraesCS6A01G165300 chr1A 93.458 214 14 0 1 214 533735824 533736037 7.590000e-83 318.0
78 TraesCS6A01G165300 chr5A 92.056 214 17 0 1 214 335239923 335240136 7.640000e-78 302.0
79 TraesCS6A01G165300 chr5A 75.528 568 108 26 2576 3121 556936034 556935476 2.810000e-62 250.0
80 TraesCS6A01G165300 chr5A 100.000 89 0 0 277 365 525451027 525451115 1.050000e-36 165.0
81 TraesCS6A01G165300 chr5D 91.628 215 16 2 1 214 505741811 505742024 3.550000e-76 296.0
82 TraesCS6A01G165300 chr5D 90.654 214 20 0 1 214 41465861 41465648 7.690000e-73 285.0
83 TraesCS6A01G165300 chr7D 91.121 214 19 0 1 214 164631259 164631472 1.650000e-74 291.0
84 TraesCS6A01G165300 chr1D 90.741 216 20 0 1 216 431964410 431964195 5.950000e-74 289.0
85 TraesCS6A01G165300 chr3B 91.080 213 17 2 3 215 479293275 479293485 2.140000e-73 287.0
86 TraesCS6A01G165300 chr4B 100.000 89 0 0 277 365 455976777 455976689 1.050000e-36 165.0
87 TraesCS6A01G165300 chr1B 100.000 89 0 0 277 365 524162292 524162380 1.050000e-36 165.0
88 TraesCS6A01G165300 chrUn 95.918 49 2 0 221 269 1912254 1912206 3.900000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G165300 chr6A 162909921 162914618 4697 False 3896.500000 7118 100.000000 1 4698 2 chr6A.!!$F4 4697
1 TraesCS6A01G165300 chr6A 171738845 171741852 3007 False 902.500000 1892 90.647250 1198 4698 4 chr6A.!!$F5 3500
2 TraesCS6A01G165300 chr6A 169225247 169226627 1380 True 813.500000 1399 91.523500 1209 2459 2 chr6A.!!$R4 1250
3 TraesCS6A01G165300 chr6A 60427230 60427880 650 False 693.000000 693 85.997000 2463 3114 1 chr6A.!!$F1 651
4 TraesCS6A01G165300 chr6A 169219555 169221052 1497 True 611.666667 1007 91.109667 3286 4698 3 chr6A.!!$R3 1412
5 TraesCS6A01G165300 chr6D 131029734 131032783 3049 True 754.200000 1389 91.977600 1209 4698 5 chr6D.!!$R2 3489
6 TraesCS6A01G165300 chr6D 146506693 146509758 3065 False 741.800000 1389 91.420400 1203 4698 5 chr6D.!!$F2 3495
7 TraesCS6A01G165300 chr6D 130210548 130213563 3015 True 578.000000 1282 90.504000 1209 4698 6 chr6D.!!$R1 3489
8 TraesCS6A01G165300 chr6B 213521254 213522422 1168 False 1375.000000 1375 88.579000 1177 2306 1 chr6B.!!$F1 1129
9 TraesCS6A01G165300 chr6B 257779909 257782952 3043 True 728.600000 1373 91.574800 1209 4698 5 chr6B.!!$R2 3489
10 TraesCS6A01G165300 chr6B 230602469 230605514 3045 False 720.400000 1341 91.214600 1198 4698 5 chr6B.!!$F3 3500
11 TraesCS6A01G165300 chr6B 228754464 228757465 3001 True 688.400000 1358 90.081600 1209 4698 5 chr6B.!!$R1 3489
12 TraesCS6A01G165300 chr6B 664306269 664307927 1658 True 405.000000 531 95.738500 2591 3114 2 chr6B.!!$R3 523
13 TraesCS6A01G165300 chr5B 84882341 84884574 2233 True 535.000000 983 91.909000 2015 4693 5 chr5B.!!$R2 2678
14 TraesCS6A01G165300 chr5B 528367279 528367967 688 True 346.000000 527 98.856000 277 1150 2 chr5B.!!$R3 873
15 TraesCS6A01G165300 chr7A 419012520 419013170 650 True 682.000000 682 85.693000 2463 3114 1 chr7A.!!$R1 651
16 TraesCS6A01G165300 chr2A 705993660 705994311 651 False 634.000000 634 84.347000 2463 3114 1 chr2A.!!$F1 651
17 TraesCS6A01G165300 chr2A 36932874 36933374 500 False 267.500000 416 89.534500 2463 3114 2 chr2A.!!$F2 651
18 TraesCS6A01G165300 chr3A 219340491 219342777 2286 True 527.000000 538 98.181000 845 1147 2 chr3A.!!$R2 302
19 TraesCS6A01G165300 chr2B 702727662 702728457 795 False 289.333333 538 99.560000 277 1147 3 chr2B.!!$F2 870
20 TraesCS6A01G165300 chr5A 556935476 556936034 558 True 250.000000 250 75.528000 2576 3121 1 chr5A.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
90 91 0.179174 GCTTTTACATGTTCGGGCCG 60.179 55.0 22.51 22.51 0.00 6.13 F
167 168 0.388659 TTTTTGCGTCATGCTTGGCT 59.611 45.0 2.47 0.00 46.63 4.75 F
1980 3194 0.379669 GGCATCTTCACCAGCAATCG 59.620 55.0 0.00 0.00 0.00 3.34 F
2845 4144 0.034896 GAGTTGCGGTCAGGAAGGAA 59.965 55.0 0.00 0.00 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1253 2403 1.000274 GCATATTGGATTTGGCGGGAC 60.000 52.381 0.00 0.00 0.00 4.46 R
2108 3322 1.396301 GAAGATTCAGCTTGCTGTCGG 59.604 52.381 20.20 0.00 0.00 4.79 R
3056 4355 0.039074 CTATCCCAACCGCTAGCGAG 60.039 60.000 37.39 27.48 42.83 5.03 R
3732 5137 0.409092 TGTGGTGCTTCCCCATCAAT 59.591 50.000 0.00 0.00 33.76 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.046604 GCCTAGGCCCGTCGTTTT 60.047 61.111 24.19 0.00 34.56 2.43
27 28 1.918868 GCCTAGGCCCGTCGTTTTTG 61.919 60.000 24.19 0.00 34.56 2.44
28 29 1.500396 CTAGGCCCGTCGTTTTTGC 59.500 57.895 0.00 0.00 0.00 3.68
29 30 2.235536 CTAGGCCCGTCGTTTTTGCG 62.236 60.000 0.00 0.00 0.00 4.85
32 33 1.586826 GCCCGTCGTTTTTGCGTTT 60.587 52.632 0.00 0.00 0.00 3.60
33 34 1.140999 GCCCGTCGTTTTTGCGTTTT 61.141 50.000 0.00 0.00 0.00 2.43
34 35 1.270068 CCCGTCGTTTTTGCGTTTTT 58.730 45.000 0.00 0.00 0.00 1.94
35 36 1.253289 CCCGTCGTTTTTGCGTTTTTC 59.747 47.619 0.00 0.00 0.00 2.29
37 38 2.036086 CCGTCGTTTTTGCGTTTTTCTG 60.036 45.455 0.00 0.00 0.00 3.02
38 39 2.841329 CGTCGTTTTTGCGTTTTTCTGA 59.159 40.909 0.00 0.00 0.00 3.27
39 40 3.298499 CGTCGTTTTTGCGTTTTTCTGAA 59.702 39.130 0.00 0.00 0.00 3.02
40 41 4.543658 CGTCGTTTTTGCGTTTTTCTGAAG 60.544 41.667 0.00 0.00 0.00 3.02
41 42 3.854809 TCGTTTTTGCGTTTTTCTGAAGG 59.145 39.130 0.00 0.00 0.00 3.46
42 43 3.610677 CGTTTTTGCGTTTTTCTGAAGGT 59.389 39.130 0.00 0.00 0.00 3.50
44 45 5.312838 GTTTTTGCGTTTTTCTGAAGGTTG 58.687 37.500 0.00 0.00 0.00 3.77
45 46 2.861462 TGCGTTTTTCTGAAGGTTGG 57.139 45.000 0.00 0.00 0.00 3.77
46 47 1.407258 TGCGTTTTTCTGAAGGTTGGG 59.593 47.619 0.00 0.00 0.00 4.12
47 48 1.868109 GCGTTTTTCTGAAGGTTGGGC 60.868 52.381 0.00 0.00 0.00 5.36
48 49 1.269569 CGTTTTTCTGAAGGTTGGGCC 60.270 52.381 0.00 0.00 37.58 5.80
49 50 1.036707 TTTTTCTGAAGGTTGGGCCG 58.963 50.000 0.00 0.00 43.70 6.13
50 51 0.825840 TTTTCTGAAGGTTGGGCCGG 60.826 55.000 0.00 0.00 43.70 6.13
51 52 1.710996 TTTCTGAAGGTTGGGCCGGA 61.711 55.000 5.05 0.00 43.70 5.14
52 53 2.359975 CTGAAGGTTGGGCCGGAC 60.360 66.667 5.05 0.00 43.70 4.79
53 54 3.920093 CTGAAGGTTGGGCCGGACC 62.920 68.421 23.70 23.70 43.70 4.46
80 81 4.629779 CCCGACGGGCTTTTACAT 57.370 55.556 22.37 0.00 35.35 2.29
81 82 2.094904 CCCGACGGGCTTTTACATG 58.905 57.895 22.37 0.00 35.35 3.21
82 83 0.675522 CCCGACGGGCTTTTACATGT 60.676 55.000 22.37 2.69 35.35 3.21
83 84 1.161843 CCGACGGGCTTTTACATGTT 58.838 50.000 2.30 0.00 0.00 2.71
85 86 1.201877 CGACGGGCTTTTACATGTTCG 60.202 52.381 2.30 0.00 0.00 3.95
86 87 1.129811 GACGGGCTTTTACATGTTCGG 59.870 52.381 2.30 0.00 0.00 4.30
90 91 0.179174 GCTTTTACATGTTCGGGCCG 60.179 55.000 22.51 22.51 0.00 6.13
91 92 0.450184 CTTTTACATGTTCGGGCCGG 59.550 55.000 27.98 12.18 0.00 6.13
166 167 2.897780 TTTTTGCGTCATGCTTGGC 58.102 47.368 0.00 0.00 46.63 4.52
167 168 0.388659 TTTTTGCGTCATGCTTGGCT 59.611 45.000 2.47 0.00 46.63 4.75
168 169 1.242989 TTTTGCGTCATGCTTGGCTA 58.757 45.000 2.47 0.00 46.63 3.93
169 170 0.804364 TTTGCGTCATGCTTGGCTAG 59.196 50.000 2.47 0.00 46.63 3.42
170 171 1.026182 TTGCGTCATGCTTGGCTAGG 61.026 55.000 2.47 0.00 46.63 3.02
171 172 2.828128 GCGTCATGCTTGGCTAGGC 61.828 63.158 9.85 9.85 41.73 3.93
209 210 2.203209 GCCCGAGGTATGGCCAAG 60.203 66.667 10.96 0.00 41.97 3.61
213 214 2.253610 CCCGAGGTATGGCCAAGTATA 58.746 52.381 10.96 0.00 40.61 1.47
215 216 3.263425 CCCGAGGTATGGCCAAGTATAAT 59.737 47.826 10.96 0.00 40.61 1.28
216 217 4.504858 CCGAGGTATGGCCAAGTATAATC 58.495 47.826 10.96 0.77 40.61 1.75
217 218 4.174009 CGAGGTATGGCCAAGTATAATCG 58.826 47.826 10.96 10.01 40.61 3.34
218 219 4.082408 CGAGGTATGGCCAAGTATAATCGA 60.082 45.833 10.96 0.00 40.61 3.59
219 220 5.407407 AGGTATGGCCAAGTATAATCGAG 57.593 43.478 10.96 0.00 40.61 4.04
220 221 5.084519 AGGTATGGCCAAGTATAATCGAGA 58.915 41.667 10.96 0.00 40.61 4.04
221 222 5.542635 AGGTATGGCCAAGTATAATCGAGAA 59.457 40.000 10.96 0.00 40.61 2.87
222 223 6.213600 AGGTATGGCCAAGTATAATCGAGAAT 59.786 38.462 10.96 0.00 40.61 2.40
224 225 8.038944 GGTATGGCCAAGTATAATCGAGAATAA 58.961 37.037 10.96 0.00 37.17 1.40
227 228 6.269077 TGGCCAAGTATAATCGAGAATAAGGA 59.731 38.462 0.61 0.00 0.00 3.36
229 230 7.379750 GCCAAGTATAATCGAGAATAAGGAGT 58.620 38.462 0.00 0.00 0.00 3.85
230 231 8.521176 GCCAAGTATAATCGAGAATAAGGAGTA 58.479 37.037 0.00 0.00 0.00 2.59
236 237 5.676532 ATCGAGAATAAGGAGTAGACACG 57.323 43.478 0.00 0.00 0.00 4.49
237 238 3.875727 TCGAGAATAAGGAGTAGACACGG 59.124 47.826 0.00 0.00 0.00 4.94
238 239 3.626670 CGAGAATAAGGAGTAGACACGGT 59.373 47.826 0.00 0.00 0.00 4.83
239 240 4.813161 CGAGAATAAGGAGTAGACACGGTA 59.187 45.833 0.00 0.00 0.00 4.02
243 244 0.624785 AGGAGTAGACACGGTAGCCT 59.375 55.000 0.00 0.00 0.00 4.58
245 246 1.461559 GAGTAGACACGGTAGCCTGT 58.538 55.000 0.00 0.00 0.00 4.00
246 247 2.636830 GAGTAGACACGGTAGCCTGTA 58.363 52.381 0.00 0.00 0.00 2.74
247 248 2.613133 GAGTAGACACGGTAGCCTGTAG 59.387 54.545 0.00 0.00 0.00 2.74
249 250 1.141234 GACACGGTAGCCTGTAGCC 59.859 63.158 0.00 0.00 45.47 3.93
250 251 1.305046 ACACGGTAGCCTGTAGCCT 60.305 57.895 0.00 0.00 45.47 4.58
251 252 1.321074 ACACGGTAGCCTGTAGCCTC 61.321 60.000 0.00 0.00 45.47 4.70
253 254 0.752376 ACGGTAGCCTGTAGCCTCTC 60.752 60.000 0.00 0.00 45.47 3.20
254 255 0.466555 CGGTAGCCTGTAGCCTCTCT 60.467 60.000 0.00 0.00 45.47 3.10
256 257 1.324383 GTAGCCTGTAGCCTCTCTCC 58.676 60.000 0.00 0.00 45.47 3.71
259 260 1.076632 CCTGTAGCCTCTCTCCCGT 60.077 63.158 0.00 0.00 0.00 5.28
261 262 1.379977 TGTAGCCTCTCTCCCGTGG 60.380 63.158 0.00 0.00 0.00 4.94
262 263 1.380112 GTAGCCTCTCTCCCGTGGT 60.380 63.158 0.00 0.00 0.00 4.16
263 264 1.076923 TAGCCTCTCTCCCGTGGTC 60.077 63.158 0.00 0.00 0.00 4.02
265 266 1.076923 GCCTCTCTCCCGTGGTCTA 60.077 63.158 0.00 0.00 0.00 2.59
266 267 0.468400 GCCTCTCTCCCGTGGTCTAT 60.468 60.000 0.00 0.00 0.00 1.98
267 268 1.323412 CCTCTCTCCCGTGGTCTATG 58.677 60.000 0.00 0.00 0.00 2.23
268 269 0.671251 CTCTCTCCCGTGGTCTATGC 59.329 60.000 0.00 0.00 0.00 3.14
270 271 1.493446 TCTCTCCCGTGGTCTATGCTA 59.507 52.381 0.00 0.00 0.00 3.49
271 272 2.108425 TCTCTCCCGTGGTCTATGCTAT 59.892 50.000 0.00 0.00 0.00 2.97
272 273 3.329814 TCTCTCCCGTGGTCTATGCTATA 59.670 47.826 0.00 0.00 0.00 1.31
274 275 2.164624 CTCCCGTGGTCTATGCTATAGC 59.835 54.545 18.18 18.18 42.50 2.97
275 276 2.171840 CCCGTGGTCTATGCTATAGCT 58.828 52.381 24.61 13.00 42.66 3.32
1108 2253 4.524318 ACGATTAGCACGGGCCGG 62.524 66.667 31.78 19.86 42.56 6.13
1156 2301 1.832912 CCAGGTCTGGTCTATGCCC 59.167 63.158 8.78 0.00 45.53 5.36
1157 2302 1.700042 CCAGGTCTGGTCTATGCCCC 61.700 65.000 8.78 0.00 45.53 5.80
1158 2303 1.762460 AGGTCTGGTCTATGCCCCG 60.762 63.158 0.00 0.00 0.00 5.73
1159 2304 2.064581 GGTCTGGTCTATGCCCCGT 61.065 63.158 0.00 0.00 0.00 5.28
1160 2305 0.757935 GGTCTGGTCTATGCCCCGTA 60.758 60.000 0.00 0.00 0.00 4.02
1161 2306 1.117150 GTCTGGTCTATGCCCCGTAA 58.883 55.000 0.00 0.00 0.00 3.18
1162 2307 1.483415 GTCTGGTCTATGCCCCGTAAA 59.517 52.381 0.00 0.00 0.00 2.01
1163 2308 2.104281 GTCTGGTCTATGCCCCGTAAAT 59.896 50.000 0.00 0.00 0.00 1.40
1164 2309 2.104111 TCTGGTCTATGCCCCGTAAATG 59.896 50.000 0.00 0.00 0.00 2.32
1165 2310 1.841277 TGGTCTATGCCCCGTAAATGT 59.159 47.619 0.00 0.00 0.00 2.71
1166 2311 3.039743 TGGTCTATGCCCCGTAAATGTA 58.960 45.455 0.00 0.00 0.00 2.29
1167 2312 3.070446 TGGTCTATGCCCCGTAAATGTAG 59.930 47.826 0.00 0.00 0.00 2.74
1168 2313 3.556423 GGTCTATGCCCCGTAAATGTAGG 60.556 52.174 0.00 0.00 0.00 3.18
1169 2314 3.322828 GTCTATGCCCCGTAAATGTAGGA 59.677 47.826 0.00 0.00 0.00 2.94
1170 2315 4.020485 GTCTATGCCCCGTAAATGTAGGAT 60.020 45.833 0.00 0.00 0.00 3.24
1171 2316 3.876309 ATGCCCCGTAAATGTAGGATT 57.124 42.857 0.00 0.00 0.00 3.01
1172 2317 4.986054 ATGCCCCGTAAATGTAGGATTA 57.014 40.909 0.00 0.00 0.00 1.75
1173 2318 4.986054 TGCCCCGTAAATGTAGGATTAT 57.014 40.909 0.00 0.00 0.00 1.28
1174 2319 5.313280 TGCCCCGTAAATGTAGGATTATT 57.687 39.130 0.00 0.00 0.00 1.40
1175 2320 5.067273 TGCCCCGTAAATGTAGGATTATTG 58.933 41.667 0.00 0.00 0.00 1.90
1253 2403 1.878522 CGCGAAATCGACCTCCTGG 60.879 63.158 0.00 0.00 43.02 4.45
1433 2629 3.353836 GCTGCCGACTTTTCGCCA 61.354 61.111 0.00 0.00 44.43 5.69
1805 3019 1.492599 CCAGATTCCCCTTCTCCTTCC 59.507 57.143 0.00 0.00 0.00 3.46
1980 3194 0.379669 GGCATCTTCACCAGCAATCG 59.620 55.000 0.00 0.00 0.00 3.34
2108 3322 1.581447 CTCCCTTGCAACCTTTCGC 59.419 57.895 0.00 0.00 0.00 4.70
2132 3346 3.748083 ACAGCAAGCTGAATCTTCTTCA 58.252 40.909 27.17 0.00 46.30 3.02
2140 3354 4.527816 AGCTGAATCTTCTTCAGTGACTCT 59.472 41.667 14.48 2.69 45.66 3.24
2199 3413 4.645535 CAACATCTCCAAGTTTCTCAGGA 58.354 43.478 0.00 0.00 0.00 3.86
2234 3448 0.180406 ATAGTGCGATTGGGGTGGAC 59.820 55.000 0.00 0.00 0.00 4.02
2235 3449 1.195442 TAGTGCGATTGGGGTGGACA 61.195 55.000 0.00 0.00 0.00 4.02
2333 3628 1.679680 CAATGGATGGCTGTCATGGAC 59.320 52.381 0.00 0.00 35.97 4.02
2364 3659 5.684704 AGTTCATCTTCTCAACAAACTGGA 58.315 37.500 0.00 0.00 0.00 3.86
2365 3660 6.302269 AGTTCATCTTCTCAACAAACTGGAT 58.698 36.000 0.00 0.00 0.00 3.41
2442 3737 2.949644 AGCGTTGGCCAAATATACCTTC 59.050 45.455 22.47 3.02 41.24 3.46
2450 3745 5.067954 GGCCAAATATACCTTCCGTGTTAT 58.932 41.667 0.00 0.00 0.00 1.89
2451 3746 5.048991 GGCCAAATATACCTTCCGTGTTATG 60.049 44.000 0.00 0.00 0.00 1.90
2452 3747 5.761234 GCCAAATATACCTTCCGTGTTATGA 59.239 40.000 0.00 0.00 0.00 2.15
2453 3748 6.430000 GCCAAATATACCTTCCGTGTTATGAT 59.570 38.462 0.00 0.00 0.00 2.45
2454 3749 7.040686 GCCAAATATACCTTCCGTGTTATGATT 60.041 37.037 0.00 0.00 0.00 2.57
2455 3750 8.846211 CCAAATATACCTTCCGTGTTATGATTT 58.154 33.333 0.00 0.00 0.00 2.17
2458 3753 4.434713 ACCTTCCGTGTTATGATTTTGC 57.565 40.909 0.00 0.00 0.00 3.68
2459 3754 3.119990 ACCTTCCGTGTTATGATTTTGCG 60.120 43.478 0.00 0.00 0.00 4.85
2460 3755 3.425404 CTTCCGTGTTATGATTTTGCGG 58.575 45.455 0.00 0.00 39.13 5.69
2461 3756 2.428491 TCCGTGTTATGATTTTGCGGT 58.572 42.857 0.00 0.00 38.89 5.68
2469 3764 2.666862 ATTTTGCGGTCGTCGGCA 60.667 55.556 10.56 10.56 45.56 5.69
2473 3768 4.794439 TGCGGTCGTCGGCATCAG 62.794 66.667 10.56 0.00 43.16 2.90
2475 3770 4.794439 CGGTCGTCGGCATCAGCA 62.794 66.667 0.00 0.00 44.61 4.41
2478 3773 0.529773 GGTCGTCGGCATCAGCAATA 60.530 55.000 0.00 0.00 44.61 1.90
2486 3781 1.143684 GGCATCAGCAATAGGGGAAGA 59.856 52.381 0.00 0.00 44.61 2.87
2487 3782 2.225467 GCATCAGCAATAGGGGAAGAC 58.775 52.381 0.00 0.00 41.58 3.01
2495 3790 2.700897 CAATAGGGGAAGACGGATCTGT 59.299 50.000 6.97 6.97 34.48 3.41
2497 3792 1.196012 AGGGGAAGACGGATCTGTTC 58.804 55.000 8.99 3.12 34.48 3.18
2507 3802 0.543749 GGATCTGTTCTGGTGGGAGG 59.456 60.000 0.00 0.00 0.00 4.30
2508 3803 1.280457 GATCTGTTCTGGTGGGAGGT 58.720 55.000 0.00 0.00 0.00 3.85
2522 3817 3.441572 GTGGGAGGTGACTGAAATTGATG 59.558 47.826 0.00 0.00 44.43 3.07
2531 3826 2.485426 ACTGAAATTGATGCTCGGTGTG 59.515 45.455 0.00 0.00 0.00 3.82
2535 3830 1.959042 ATTGATGCTCGGTGTGGATC 58.041 50.000 0.00 0.00 33.71 3.36
2554 3849 3.690280 CGCCCCCGCAATGGTTTT 61.690 61.111 0.00 0.00 35.15 2.43
2562 3857 1.586154 CGCAATGGTTTTCGCCCTCT 61.586 55.000 0.00 0.00 0.00 3.69
2566 3861 0.673644 ATGGTTTTCGCCCTCTGTCG 60.674 55.000 0.00 0.00 0.00 4.35
2575 3870 0.532573 GCCCTCTGTCGAATCTGTCA 59.467 55.000 0.00 0.00 0.00 3.58
2577 3872 1.546029 CCCTCTGTCGAATCTGTCACA 59.454 52.381 0.00 0.00 0.00 3.58
2581 3876 1.273606 CTGTCGAATCTGTCACACCCT 59.726 52.381 0.00 0.00 0.00 4.34
2814 4113 1.201965 GCAGATCTTGCGGTTTTCTCG 60.202 52.381 0.00 0.00 44.09 4.04
2842 4141 1.738099 CGGAGTTGCGGTCAGGAAG 60.738 63.158 0.00 0.00 0.00 3.46
2843 4142 1.376037 GGAGTTGCGGTCAGGAAGG 60.376 63.158 0.00 0.00 0.00 3.46
2844 4143 1.671742 GAGTTGCGGTCAGGAAGGA 59.328 57.895 0.00 0.00 0.00 3.36
2845 4144 0.034896 GAGTTGCGGTCAGGAAGGAA 59.965 55.000 0.00 0.00 0.00 3.36
2846 4145 0.472471 AGTTGCGGTCAGGAAGGAAA 59.528 50.000 0.00 0.00 0.00 3.13
2847 4146 1.073923 AGTTGCGGTCAGGAAGGAAAT 59.926 47.619 0.00 0.00 0.00 2.17
2849 4148 0.322456 TGCGGTCAGGAAGGAAATGG 60.322 55.000 0.00 0.00 0.00 3.16
2850 4149 1.032114 GCGGTCAGGAAGGAAATGGG 61.032 60.000 0.00 0.00 0.00 4.00
2851 4150 0.618458 CGGTCAGGAAGGAAATGGGA 59.382 55.000 0.00 0.00 0.00 4.37
2852 4151 1.407437 CGGTCAGGAAGGAAATGGGAG 60.407 57.143 0.00 0.00 0.00 4.30
2853 4152 1.064389 GGTCAGGAAGGAAATGGGAGG 60.064 57.143 0.00 0.00 0.00 4.30
2854 4153 0.625849 TCAGGAAGGAAATGGGAGGC 59.374 55.000 0.00 0.00 0.00 4.70
2855 4154 0.749454 CAGGAAGGAAATGGGAGGCG 60.749 60.000 0.00 0.00 0.00 5.52
2856 4155 0.914417 AGGAAGGAAATGGGAGGCGA 60.914 55.000 0.00 0.00 0.00 5.54
2857 4156 0.183731 GGAAGGAAATGGGAGGCGAT 59.816 55.000 0.00 0.00 0.00 4.58
2858 4157 1.410224 GGAAGGAAATGGGAGGCGATT 60.410 52.381 0.00 0.00 0.00 3.34
2859 4158 1.950216 GAAGGAAATGGGAGGCGATTC 59.050 52.381 0.00 0.00 0.00 2.52
2860 4159 0.918983 AGGAAATGGGAGGCGATTCA 59.081 50.000 0.00 0.00 0.00 2.57
2861 4160 1.284785 AGGAAATGGGAGGCGATTCAA 59.715 47.619 0.00 0.00 0.00 2.69
2862 4161 2.099405 GGAAATGGGAGGCGATTCAAA 58.901 47.619 0.00 0.00 0.00 2.69
2863 4162 2.695147 GGAAATGGGAGGCGATTCAAAT 59.305 45.455 0.00 0.00 0.00 2.32
2864 4163 3.132824 GGAAATGGGAGGCGATTCAAATT 59.867 43.478 0.00 0.00 0.00 1.82
2865 4164 4.383010 GGAAATGGGAGGCGATTCAAATTT 60.383 41.667 0.00 0.00 0.00 1.82
2866 4165 4.391405 AATGGGAGGCGATTCAAATTTC 57.609 40.909 0.00 0.00 0.00 2.17
2867 4166 1.742831 TGGGAGGCGATTCAAATTTCG 59.257 47.619 0.00 0.00 38.37 3.46
2868 4167 2.014128 GGGAGGCGATTCAAATTTCGA 58.986 47.619 1.54 0.00 37.55 3.71
2869 4168 2.422127 GGGAGGCGATTCAAATTTCGAA 59.578 45.455 0.00 0.00 37.55 3.71
2870 4169 3.066760 GGGAGGCGATTCAAATTTCGAAT 59.933 43.478 0.00 12.65 37.55 3.34
2871 4170 4.037690 GGAGGCGATTCAAATTTCGAATG 58.962 43.478 15.85 0.00 37.55 2.67
2872 4171 4.032703 AGGCGATTCAAATTTCGAATGG 57.967 40.909 15.85 15.30 37.55 3.16
2873 4172 3.823716 GCGATTCAAATTTCGAATGGC 57.176 42.857 21.78 21.78 43.92 4.40
2874 4173 3.438360 GCGATTCAAATTTCGAATGGCT 58.562 40.909 25.11 7.77 45.60 4.75
2875 4174 3.859386 GCGATTCAAATTTCGAATGGCTT 59.141 39.130 25.11 7.53 45.60 4.35
2876 4175 4.027377 GCGATTCAAATTTCGAATGGCTTC 60.027 41.667 25.11 12.37 45.60 3.86
2877 4176 5.335127 CGATTCAAATTTCGAATGGCTTCT 58.665 37.500 15.85 0.00 37.55 2.85
2878 4177 5.453587 CGATTCAAATTTCGAATGGCTTCTC 59.546 40.000 15.85 5.08 37.55 2.87
2879 4178 4.701956 TCAAATTTCGAATGGCTTCTCC 57.298 40.909 0.00 0.00 0.00 3.71
2880 4179 4.335416 TCAAATTTCGAATGGCTTCTCCT 58.665 39.130 0.00 0.00 35.26 3.69
2881 4180 4.396166 TCAAATTTCGAATGGCTTCTCCTC 59.604 41.667 0.00 0.00 35.26 3.71
2882 4181 2.403252 TTTCGAATGGCTTCTCCTCC 57.597 50.000 0.00 0.00 35.26 4.30
2883 4182 0.541863 TTCGAATGGCTTCTCCTCCC 59.458 55.000 0.00 0.00 35.26 4.30
2884 4183 0.617535 TCGAATGGCTTCTCCTCCCA 60.618 55.000 0.00 0.00 35.26 4.37
2885 4184 0.462759 CGAATGGCTTCTCCTCCCAC 60.463 60.000 0.00 0.00 35.26 4.61
2886 4185 0.620556 GAATGGCTTCTCCTCCCACA 59.379 55.000 0.00 0.00 35.26 4.17
2887 4186 1.004745 GAATGGCTTCTCCTCCCACAA 59.995 52.381 0.00 0.00 35.26 3.33
2888 4187 0.622665 ATGGCTTCTCCTCCCACAAG 59.377 55.000 0.00 0.00 35.26 3.16
2889 4188 1.301293 GGCTTCTCCTCCCACAAGG 59.699 63.158 0.00 0.00 37.81 3.61
2890 4189 1.492993 GGCTTCTCCTCCCACAAGGT 61.493 60.000 0.00 0.00 37.69 3.50
2891 4190 0.322008 GCTTCTCCTCCCACAAGGTG 60.322 60.000 0.00 0.00 37.69 4.00
2900 4199 2.825982 CACAAGGTGGGGTCGTGA 59.174 61.111 0.00 0.00 0.00 4.35
2901 4200 1.597027 CACAAGGTGGGGTCGTGAC 60.597 63.158 0.00 0.00 0.00 3.67
2902 4201 2.067605 ACAAGGTGGGGTCGTGACA 61.068 57.895 2.00 0.00 0.00 3.58
2903 4202 1.301716 CAAGGTGGGGTCGTGACAG 60.302 63.158 2.00 0.00 0.00 3.51
2904 4203 3.178540 AAGGTGGGGTCGTGACAGC 62.179 63.158 2.00 0.00 0.00 4.40
2905 4204 3.936203 GGTGGGGTCGTGACAGCA 61.936 66.667 2.00 0.00 33.18 4.41
2906 4205 2.357517 GTGGGGTCGTGACAGCAG 60.358 66.667 2.00 0.00 0.00 4.24
2907 4206 2.842462 TGGGGTCGTGACAGCAGT 60.842 61.111 2.00 0.00 0.00 4.40
2908 4207 1.532078 TGGGGTCGTGACAGCAGTA 60.532 57.895 2.00 0.00 0.00 2.74
2909 4208 1.080025 GGGGTCGTGACAGCAGTAC 60.080 63.158 2.00 0.00 0.00 2.73
2910 4209 1.663739 GGGTCGTGACAGCAGTACA 59.336 57.895 2.00 0.00 0.00 2.90
2911 4210 0.388649 GGGTCGTGACAGCAGTACAG 60.389 60.000 2.00 0.00 0.00 2.74
2912 4211 0.388649 GGTCGTGACAGCAGTACAGG 60.389 60.000 2.00 0.00 0.00 4.00
2913 4212 0.314302 GTCGTGACAGCAGTACAGGT 59.686 55.000 0.00 0.00 0.00 4.00
2914 4213 1.538512 GTCGTGACAGCAGTACAGGTA 59.461 52.381 0.00 0.00 0.00 3.08
2915 4214 2.163815 GTCGTGACAGCAGTACAGGTAT 59.836 50.000 0.00 0.00 0.00 2.73
2916 4215 2.163613 TCGTGACAGCAGTACAGGTATG 59.836 50.000 0.00 0.00 0.00 2.39
2917 4216 2.735444 CGTGACAGCAGTACAGGTATGG 60.735 54.545 0.00 0.00 0.00 2.74
2918 4217 1.831106 TGACAGCAGTACAGGTATGGG 59.169 52.381 0.00 0.00 0.00 4.00
2919 4218 0.541863 ACAGCAGTACAGGTATGGGC 59.458 55.000 0.00 0.00 0.00 5.36
2920 4219 0.179045 CAGCAGTACAGGTATGGGCC 60.179 60.000 0.00 0.00 0.00 5.80
2921 4220 1.227556 GCAGTACAGGTATGGGCCG 60.228 63.158 0.00 0.00 0.00 6.13
2922 4221 1.227556 CAGTACAGGTATGGGCCGC 60.228 63.158 0.00 0.00 0.00 6.53
2923 4222 2.110420 GTACAGGTATGGGCCGCC 59.890 66.667 0.00 0.00 0.00 6.13
2924 4223 3.542676 TACAGGTATGGGCCGCCG 61.543 66.667 2.55 0.98 0.00 6.46
2936 4235 4.116328 CCGCCGCTCGTCTCTGAA 62.116 66.667 0.00 0.00 36.19 3.02
2937 4236 2.103143 CGCCGCTCGTCTCTGAAT 59.897 61.111 0.00 0.00 0.00 2.57
2938 4237 1.355563 CGCCGCTCGTCTCTGAATA 59.644 57.895 0.00 0.00 0.00 1.75
2939 4238 0.930742 CGCCGCTCGTCTCTGAATAC 60.931 60.000 0.00 0.00 0.00 1.89
2940 4239 0.930742 GCCGCTCGTCTCTGAATACG 60.931 60.000 6.01 6.01 40.40 3.06
2941 4240 0.377554 CCGCTCGTCTCTGAATACGT 59.622 55.000 10.74 0.00 39.99 3.57
2942 4241 1.596260 CCGCTCGTCTCTGAATACGTA 59.404 52.381 0.00 0.00 39.99 3.57
2943 4242 2.223611 CCGCTCGTCTCTGAATACGTAT 59.776 50.000 1.14 1.14 39.99 3.06
2944 4243 3.219189 CGCTCGTCTCTGAATACGTATG 58.781 50.000 9.24 0.00 39.99 2.39
2945 4244 2.974536 GCTCGTCTCTGAATACGTATGC 59.025 50.000 9.24 7.86 39.99 3.14
2946 4245 3.219189 CTCGTCTCTGAATACGTATGCG 58.781 50.000 9.24 0.19 44.93 4.73
2947 4246 2.867975 TCGTCTCTGAATACGTATGCGA 59.132 45.455 11.07 8.19 42.00 5.10
2948 4247 3.059800 TCGTCTCTGAATACGTATGCGAG 60.060 47.826 20.46 20.46 42.00 5.03
2949 4248 3.556513 GTCTCTGAATACGTATGCGAGG 58.443 50.000 23.47 12.33 42.00 4.63
2950 4249 2.552743 TCTCTGAATACGTATGCGAGGG 59.447 50.000 23.47 15.95 42.00 4.30
2951 4250 2.293677 CTCTGAATACGTATGCGAGGGT 59.706 50.000 19.47 1.52 42.00 4.34
2952 4251 2.691526 TCTGAATACGTATGCGAGGGTT 59.308 45.455 11.07 0.00 42.00 4.11
2953 4252 2.794910 CTGAATACGTATGCGAGGGTTG 59.205 50.000 11.07 0.00 42.00 3.77
2954 4253 2.132762 GAATACGTATGCGAGGGTTGG 58.867 52.381 11.07 0.00 42.00 3.77
2955 4254 1.405872 ATACGTATGCGAGGGTTGGA 58.594 50.000 11.07 0.00 42.00 3.53
2956 4255 0.457035 TACGTATGCGAGGGTTGGAC 59.543 55.000 11.07 0.00 42.00 4.02
2957 4256 1.255667 ACGTATGCGAGGGTTGGACT 61.256 55.000 11.07 0.00 42.00 3.85
2958 4257 0.527817 CGTATGCGAGGGTTGGACTC 60.528 60.000 0.00 0.00 41.33 3.36
2959 4258 0.824759 GTATGCGAGGGTTGGACTCT 59.175 55.000 0.00 0.00 32.83 3.24
2960 4259 0.824109 TATGCGAGGGTTGGACTCTG 59.176 55.000 0.00 0.00 32.83 3.35
2961 4260 1.194781 ATGCGAGGGTTGGACTCTGT 61.195 55.000 0.00 0.00 32.83 3.41
2962 4261 0.541063 TGCGAGGGTTGGACTCTGTA 60.541 55.000 0.00 0.00 32.83 2.74
2963 4262 0.824759 GCGAGGGTTGGACTCTGTAT 59.175 55.000 0.00 0.00 32.83 2.29
2964 4263 1.207329 GCGAGGGTTGGACTCTGTATT 59.793 52.381 0.00 0.00 32.83 1.89
2965 4264 2.738964 GCGAGGGTTGGACTCTGTATTC 60.739 54.545 0.00 0.00 32.83 1.75
2966 4265 2.496070 CGAGGGTTGGACTCTGTATTCA 59.504 50.000 0.00 0.00 32.83 2.57
2967 4266 3.133003 CGAGGGTTGGACTCTGTATTCAT 59.867 47.826 0.00 0.00 32.83 2.57
2968 4267 4.698575 GAGGGTTGGACTCTGTATTCATC 58.301 47.826 0.00 0.00 32.28 2.92
2969 4268 3.133003 AGGGTTGGACTCTGTATTCATCG 59.867 47.826 0.00 0.00 0.00 3.84
2970 4269 2.866762 GGTTGGACTCTGTATTCATCGC 59.133 50.000 0.00 0.00 0.00 4.58
2971 4270 2.492019 TGGACTCTGTATTCATCGCG 57.508 50.000 0.00 0.00 0.00 5.87
2972 4271 1.749063 TGGACTCTGTATTCATCGCGT 59.251 47.619 5.77 0.00 0.00 6.01
2973 4272 2.120232 GGACTCTGTATTCATCGCGTG 58.880 52.381 5.77 3.96 0.00 5.34
2974 4273 1.518929 GACTCTGTATTCATCGCGTGC 59.481 52.381 5.77 0.00 0.00 5.34
2975 4274 1.135139 ACTCTGTATTCATCGCGTGCT 59.865 47.619 5.77 0.00 0.00 4.40
2976 4275 1.520174 CTCTGTATTCATCGCGTGCTG 59.480 52.381 5.77 2.65 0.00 4.41
2977 4276 0.578683 CTGTATTCATCGCGTGCTGG 59.421 55.000 5.77 0.00 0.00 4.85
2978 4277 0.108377 TGTATTCATCGCGTGCTGGT 60.108 50.000 5.77 0.00 0.00 4.00
2979 4278 1.006832 GTATTCATCGCGTGCTGGTT 58.993 50.000 5.77 0.00 0.00 3.67
2980 4279 1.396996 GTATTCATCGCGTGCTGGTTT 59.603 47.619 5.77 0.00 0.00 3.27
2981 4280 0.168788 ATTCATCGCGTGCTGGTTTG 59.831 50.000 5.77 0.00 0.00 2.93
2982 4281 1.851021 TTCATCGCGTGCTGGTTTGG 61.851 55.000 5.77 0.00 0.00 3.28
2983 4282 2.031919 ATCGCGTGCTGGTTTGGA 59.968 55.556 5.77 0.00 0.00 3.53
2984 4283 1.599518 ATCGCGTGCTGGTTTGGAA 60.600 52.632 5.77 0.00 0.00 3.53
2985 4284 1.169661 ATCGCGTGCTGGTTTGGAAA 61.170 50.000 5.77 0.00 0.00 3.13
2986 4285 1.064946 CGCGTGCTGGTTTGGAAAA 59.935 52.632 0.00 0.00 0.00 2.29
2987 4286 0.934436 CGCGTGCTGGTTTGGAAAAG 60.934 55.000 0.00 0.00 0.00 2.27
2988 4287 0.597377 GCGTGCTGGTTTGGAAAAGG 60.597 55.000 0.00 0.00 0.00 3.11
2989 4288 1.028905 CGTGCTGGTTTGGAAAAGGA 58.971 50.000 0.00 0.00 0.00 3.36
2990 4289 1.613437 CGTGCTGGTTTGGAAAAGGAT 59.387 47.619 0.00 0.00 0.00 3.24
2991 4290 2.607771 CGTGCTGGTTTGGAAAAGGATG 60.608 50.000 0.00 0.00 0.00 3.51
2992 4291 1.344114 TGCTGGTTTGGAAAAGGATGC 59.656 47.619 0.00 0.00 0.00 3.91
2993 4292 1.669795 GCTGGTTTGGAAAAGGATGCG 60.670 52.381 0.00 0.00 0.00 4.73
2994 4293 1.885887 CTGGTTTGGAAAAGGATGCGA 59.114 47.619 0.00 0.00 0.00 5.10
2995 4294 1.885887 TGGTTTGGAAAAGGATGCGAG 59.114 47.619 0.00 0.00 0.00 5.03
2996 4295 1.202348 GGTTTGGAAAAGGATGCGAGG 59.798 52.381 0.00 0.00 0.00 4.63
2997 4296 1.886542 GTTTGGAAAAGGATGCGAGGT 59.113 47.619 0.00 0.00 0.00 3.85
2998 4297 1.533625 TTGGAAAAGGATGCGAGGTG 58.466 50.000 0.00 0.00 0.00 4.00
2999 4298 0.322456 TGGAAAAGGATGCGAGGTGG 60.322 55.000 0.00 0.00 0.00 4.61
3000 4299 1.032114 GGAAAAGGATGCGAGGTGGG 61.032 60.000 0.00 0.00 0.00 4.61
3001 4300 1.000896 AAAAGGATGCGAGGTGGGG 60.001 57.895 0.00 0.00 0.00 4.96
3002 4301 1.789576 AAAAGGATGCGAGGTGGGGT 61.790 55.000 0.00 0.00 0.00 4.95
3003 4302 2.198304 AAAGGATGCGAGGTGGGGTC 62.198 60.000 0.00 0.00 0.00 4.46
3004 4303 4.530857 GGATGCGAGGTGGGGTCG 62.531 72.222 0.00 0.00 40.50 4.79
3005 4304 4.530857 GATGCGAGGTGGGGTCGG 62.531 72.222 0.00 0.00 37.91 4.79
3009 4308 3.760035 CGAGGTGGGGTCGGAGTG 61.760 72.222 0.00 0.00 33.66 3.51
3010 4309 2.283676 GAGGTGGGGTCGGAGTGA 60.284 66.667 0.00 0.00 0.00 3.41
3011 4310 1.911766 GAGGTGGGGTCGGAGTGAA 60.912 63.158 0.00 0.00 0.00 3.18
3012 4311 1.460689 AGGTGGGGTCGGAGTGAAA 60.461 57.895 0.00 0.00 0.00 2.69
3013 4312 0.840722 AGGTGGGGTCGGAGTGAAAT 60.841 55.000 0.00 0.00 0.00 2.17
3014 4313 0.676782 GGTGGGGTCGGAGTGAAATG 60.677 60.000 0.00 0.00 0.00 2.32
3015 4314 1.002624 TGGGGTCGGAGTGAAATGC 60.003 57.895 0.00 0.00 0.00 3.56
3016 4315 1.749258 GGGGTCGGAGTGAAATGCC 60.749 63.158 0.00 0.00 0.00 4.40
3017 4316 1.002624 GGGTCGGAGTGAAATGCCA 60.003 57.895 0.00 0.00 0.00 4.92
3018 4317 1.305930 GGGTCGGAGTGAAATGCCAC 61.306 60.000 0.00 0.00 37.32 5.01
3019 4318 1.305930 GGTCGGAGTGAAATGCCACC 61.306 60.000 0.00 0.00 37.76 4.61
3020 4319 0.321653 GTCGGAGTGAAATGCCACCT 60.322 55.000 0.00 0.00 37.76 4.00
3021 4320 0.321564 TCGGAGTGAAATGCCACCTG 60.322 55.000 0.00 0.00 37.76 4.00
3022 4321 1.308069 CGGAGTGAAATGCCACCTGG 61.308 60.000 0.00 0.00 37.76 4.45
3023 4322 0.967380 GGAGTGAAATGCCACCTGGG 60.967 60.000 0.00 0.00 37.76 4.45
3046 4345 3.717294 GGTCCGGCTGGTGTGGAT 61.717 66.667 12.43 0.00 36.30 3.41
3047 4346 2.125106 GTCCGGCTGGTGTGGATC 60.125 66.667 12.43 0.00 36.30 3.36
3048 4347 3.399181 TCCGGCTGGTGTGGATCC 61.399 66.667 12.43 4.20 36.30 3.36
3049 4348 3.716195 CCGGCTGGTGTGGATCCA 61.716 66.667 11.44 11.44 0.00 3.41
3050 4349 2.436646 CGGCTGGTGTGGATCCAC 60.437 66.667 33.97 33.97 46.33 4.02
3058 4357 3.188786 GTGGATCCACACGCGCTC 61.189 66.667 35.21 9.41 45.53 5.03
3059 4358 4.794439 TGGATCCACACGCGCTCG 62.794 66.667 11.44 0.00 42.43 5.03
3062 4361 3.751401 GATCCACACGCGCTCGCTA 62.751 63.158 5.73 0.00 39.84 4.26
3063 4362 3.758088 ATCCACACGCGCTCGCTAG 62.758 63.158 5.73 6.94 39.84 3.42
3072 4371 4.143333 GCTCGCTAGCGGTTGGGA 62.143 66.667 34.76 15.15 39.39 4.37
3073 4372 2.815308 CTCGCTAGCGGTTGGGAT 59.185 61.111 34.76 0.00 40.25 3.85
3074 4373 2.038690 CTCGCTAGCGGTTGGGATA 58.961 57.895 34.76 13.65 40.25 2.59
3075 4374 0.039074 CTCGCTAGCGGTTGGGATAG 60.039 60.000 34.76 19.11 40.25 2.08
3076 4375 1.664965 CGCTAGCGGTTGGGATAGC 60.665 63.158 29.29 0.91 45.80 2.97
3077 4376 1.301795 GCTAGCGGTTGGGATAGCC 60.302 63.158 0.00 0.00 44.07 3.93
3081 4380 2.588877 CGGTTGGGATAGCCGCTG 60.589 66.667 2.16 0.00 46.17 5.18
3082 4381 2.590092 GGTTGGGATAGCCGCTGT 59.410 61.111 2.16 0.00 33.83 4.40
3083 4382 1.819632 GGTTGGGATAGCCGCTGTG 60.820 63.158 2.16 0.00 33.83 3.66
3084 4383 1.220749 GTTGGGATAGCCGCTGTGA 59.779 57.895 2.16 0.00 33.83 3.58
3085 4384 0.392461 GTTGGGATAGCCGCTGTGAA 60.392 55.000 2.16 0.00 33.83 3.18
3086 4385 0.392461 TTGGGATAGCCGCTGTGAAC 60.392 55.000 2.16 0.00 33.83 3.18
3087 4386 1.883084 GGGATAGCCGCTGTGAACG 60.883 63.158 2.16 0.00 33.83 3.95
3174 4474 2.125512 GTCTGCCAGGGCTACACG 60.126 66.667 12.19 0.00 42.51 4.49
3220 4520 1.697432 ACAAATCCTTGGTCCGTCTCA 59.303 47.619 0.00 0.00 36.82 3.27
3275 4575 4.400251 CCATCATTTTAAGCTCAAGCCTGA 59.600 41.667 0.00 0.00 43.38 3.86
3346 4646 2.341846 AGCTTGGTCGGAGTTCAAAA 57.658 45.000 0.00 0.00 0.00 2.44
3378 4686 1.635663 GGCGCGTGTCTGCTTATGTT 61.636 55.000 8.43 0.00 0.00 2.71
3426 4734 3.327404 TCAAAGGACCGGGCTCCC 61.327 66.667 7.57 1.14 0.00 4.30
3456 4764 2.303022 AGTTGATGACACCGAACCAGAT 59.697 45.455 0.00 0.00 0.00 2.90
3560 4868 2.441001 ACCCTCATTAGCTCCAATCAGG 59.559 50.000 0.00 0.00 39.47 3.86
3561 4869 2.502295 CCTCATTAGCTCCAATCAGGC 58.498 52.381 0.00 0.00 37.29 4.85
3586 4896 7.113658 CAGGTAACACACTGGTAAGATCTAT 57.886 40.000 0.00 0.00 41.41 1.98
3588 4898 6.039493 AGGTAACACACTGGTAAGATCTATCG 59.961 42.308 0.00 0.00 41.41 2.92
3666 4976 5.177725 ACAGAACGTAAATCAAAACCACC 57.822 39.130 0.00 0.00 0.00 4.61
3732 5137 9.223099 GTGTACACCTTTTAAATAGGCTTTAGA 57.777 33.333 15.42 2.95 36.17 2.10
3760 5165 0.721718 GAAGCACCACAGTACGCATC 59.278 55.000 0.00 0.00 0.00 3.91
3763 5168 1.135083 AGCACCACAGTACGCATCTAC 60.135 52.381 0.00 0.00 0.00 2.59
3808 5213 6.012333 TCCCTCTAGTCTAGTTCTGAAGAAGT 60.012 42.308 6.77 5.74 40.50 3.01
3816 5221 4.092116 AGTTCTGAAGAAGTCCCCAAAG 57.908 45.455 0.00 0.00 32.58 2.77
3823 5228 0.673985 GAAGTCCCCAAAGTGCAACC 59.326 55.000 0.00 0.00 37.80 3.77
3935 5439 6.619801 ACATTACTGTGGAACTCTTCAAAC 57.380 37.500 0.00 0.00 38.04 2.93
3941 5445 5.765182 ACTGTGGAACTCTTCAAACCAATAG 59.235 40.000 0.00 0.00 38.04 1.73
4061 6105 3.071874 TGAACCTATGCCTCAACCAAG 57.928 47.619 0.00 0.00 0.00 3.61
4070 6114 2.357637 TGCCTCAACCAAGAACTTTTCG 59.642 45.455 0.00 0.00 34.02 3.46
4079 6123 4.750598 ACCAAGAACTTTTCGAGAACTAGC 59.249 41.667 0.00 0.00 34.02 3.42
4109 6156 7.604545 GGGAGTATAATAACCTGAGAGCATTTC 59.395 40.741 0.00 0.00 0.00 2.17
4110 6157 8.371699 GGAGTATAATAACCTGAGAGCATTTCT 58.628 37.037 0.00 0.00 39.43 2.52
4187 6263 9.533253 CTTTTTCCATGTTGAACTGTTAAGAAT 57.467 29.630 0.00 0.00 0.00 2.40
4191 6267 9.567776 TTCCATGTTGAACTGTTAAGAATAGAA 57.432 29.630 0.00 0.00 0.00 2.10
4275 6378 8.592105 TTGCTAAAATTGGATGACTTCTTTTG 57.408 30.769 0.00 0.00 0.00 2.44
4304 6407 3.323403 TGATTTTGGCTTAACAGTTGGGG 59.677 43.478 0.00 0.00 0.00 4.96
4357 6460 1.550524 AGCACGACATGAAGCCTCTTA 59.449 47.619 0.00 0.00 0.00 2.10
4442 6558 8.949953 CAAATGATTTCAAATCTTGTTTGTTGC 58.050 29.630 11.46 0.00 0.00 4.17
4464 6586 7.724305 TGCGGTCCATTTCTTAAATATCTAC 57.276 36.000 0.00 0.00 0.00 2.59
4465 6587 6.708949 TGCGGTCCATTTCTTAAATATCTACC 59.291 38.462 0.00 0.00 0.00 3.18
4472 6594 8.774586 CCATTTCTTAAATATCTACCGGTTGAG 58.225 37.037 22.81 11.37 0.00 3.02
4494 6616 3.614870 GCCTTATGGTTGTTTGGCTTCTG 60.615 47.826 0.00 0.00 37.58 3.02
4524 6648 5.939764 ACTAGTTCATTGAGATGCTGGTA 57.060 39.130 0.00 0.00 33.14 3.25
4551 6675 7.802738 ACACTTTGTTGGCTTTTCTTTAAAAC 58.197 30.769 0.00 0.00 31.37 2.43
4555 6679 9.838975 CTTTGTTGGCTTTTCTTTAAAACAAAT 57.161 25.926 10.23 0.00 34.62 2.32
4556 6680 9.833182 TTTGTTGGCTTTTCTTTAAAACAAATC 57.167 25.926 6.69 0.00 32.18 2.17
4557 6681 8.785329 TGTTGGCTTTTCTTTAAAACAAATCT 57.215 26.923 0.00 0.00 31.37 2.40
4559 6683 9.489393 GTTGGCTTTTCTTTAAAACAAATCTTG 57.511 29.630 0.00 0.00 31.37 3.02
4600 6779 8.593945 AATTAGCTGGAAATATCTGTGGAAAA 57.406 30.769 0.00 0.00 0.00 2.29
4601 6780 8.593945 ATTAGCTGGAAATATCTGTGGAAAAA 57.406 30.769 0.00 0.00 0.00 1.94
4613 6792 7.645058 ATCTGTGGAAAAAGTCTTTCTTGAA 57.355 32.000 0.00 0.00 36.40 2.69
4687 7259 1.939934 CTGAACTTGCAAGGTGAACGA 59.060 47.619 29.18 4.24 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.918868 GCAAAAACGACGGGCCTAGG 61.919 60.000 3.67 3.67 0.00 3.02
13 14 2.940250 AAACGCAAAAACGACGGGCC 62.940 55.000 0.00 0.00 36.70 5.80
14 15 1.140999 AAAACGCAAAAACGACGGGC 61.141 50.000 0.00 0.00 36.70 6.13
15 16 1.253289 GAAAAACGCAAAAACGACGGG 59.747 47.619 0.00 0.00 36.70 5.28
16 17 2.036086 CAGAAAAACGCAAAAACGACGG 60.036 45.455 0.00 0.00 36.70 4.79
17 18 2.841329 TCAGAAAAACGCAAAAACGACG 59.159 40.909 0.00 0.00 36.70 5.12
18 19 4.259253 CCTTCAGAAAAACGCAAAAACGAC 60.259 41.667 0.00 0.00 36.70 4.34
20 21 3.610677 ACCTTCAGAAAAACGCAAAAACG 59.389 39.130 0.00 0.00 39.50 3.60
21 22 5.312838 CAACCTTCAGAAAAACGCAAAAAC 58.687 37.500 0.00 0.00 0.00 2.43
23 24 3.929610 CCAACCTTCAGAAAAACGCAAAA 59.070 39.130 0.00 0.00 0.00 2.44
25 26 2.159170 CCCAACCTTCAGAAAAACGCAA 60.159 45.455 0.00 0.00 0.00 4.85
27 28 1.868109 GCCCAACCTTCAGAAAAACGC 60.868 52.381 0.00 0.00 0.00 4.84
28 29 1.269569 GGCCCAACCTTCAGAAAAACG 60.270 52.381 0.00 0.00 34.51 3.60
29 30 1.269569 CGGCCCAACCTTCAGAAAAAC 60.270 52.381 0.00 0.00 35.61 2.43
32 33 1.228429 CCGGCCCAACCTTCAGAAA 60.228 57.895 0.00 0.00 35.61 2.52
33 34 2.150719 TCCGGCCCAACCTTCAGAA 61.151 57.895 0.00 0.00 35.61 3.02
34 35 2.528127 TCCGGCCCAACCTTCAGA 60.528 61.111 0.00 0.00 35.61 3.27
35 36 2.359975 GTCCGGCCCAACCTTCAG 60.360 66.667 0.00 0.00 35.61 3.02
65 66 1.201877 CGAACATGTAAAAGCCCGTCG 60.202 52.381 0.00 0.00 0.00 5.12
67 68 1.161843 CCGAACATGTAAAAGCCCGT 58.838 50.000 0.00 0.00 0.00 5.28
69 70 0.172578 GCCCGAACATGTAAAAGCCC 59.827 55.000 0.00 0.00 0.00 5.19
70 71 0.172578 GGCCCGAACATGTAAAAGCC 59.827 55.000 12.45 12.45 0.00 4.35
71 72 0.179174 CGGCCCGAACATGTAAAAGC 60.179 55.000 0.00 0.08 0.00 3.51
72 73 0.450184 CCGGCCCGAACATGTAAAAG 59.550 55.000 3.71 0.00 0.00 2.27
73 74 0.961358 CCCGGCCCGAACATGTAAAA 60.961 55.000 3.71 0.00 0.00 1.52
74 75 1.377463 CCCGGCCCGAACATGTAAA 60.377 57.895 3.71 0.00 0.00 2.01
75 76 2.269562 CCCGGCCCGAACATGTAA 59.730 61.111 3.71 0.00 0.00 2.41
76 77 4.476752 GCCCGGCCCGAACATGTA 62.477 66.667 3.71 0.00 0.00 2.29
148 149 0.388659 AGCCAAGCATGACGCAAAAA 59.611 45.000 0.00 0.00 46.13 1.94
149 150 1.199789 CTAGCCAAGCATGACGCAAAA 59.800 47.619 0.00 0.00 46.13 2.44
151 152 1.026182 CCTAGCCAAGCATGACGCAA 61.026 55.000 0.00 0.00 46.13 4.85
152 153 1.450134 CCTAGCCAAGCATGACGCA 60.450 57.895 0.00 0.00 46.13 5.24
153 154 2.828128 GCCTAGCCAAGCATGACGC 61.828 63.158 0.00 0.00 42.91 5.19
193 194 1.056660 ATACTTGGCCATACCTCGGG 58.943 55.000 6.09 0.00 40.22 5.14
195 196 4.082408 TCGATTATACTTGGCCATACCTCG 60.082 45.833 6.09 9.58 40.22 4.63
196 197 5.185249 TCTCGATTATACTTGGCCATACCTC 59.815 44.000 6.09 0.00 40.22 3.85
197 198 5.084519 TCTCGATTATACTTGGCCATACCT 58.915 41.667 6.09 0.00 40.22 3.08
199 200 8.997621 TTATTCTCGATTATACTTGGCCATAC 57.002 34.615 6.09 0.00 0.00 2.39
200 201 8.258007 CCTTATTCTCGATTATACTTGGCCATA 58.742 37.037 6.09 0.00 0.00 2.74
201 202 7.038302 TCCTTATTCTCGATTATACTTGGCCAT 60.038 37.037 6.09 0.00 0.00 4.40
202 203 6.269077 TCCTTATTCTCGATTATACTTGGCCA 59.731 38.462 0.00 0.00 0.00 5.36
204 205 7.379750 ACTCCTTATTCTCGATTATACTTGGC 58.620 38.462 0.00 0.00 0.00 4.52
213 214 5.008811 CCGTGTCTACTCCTTATTCTCGATT 59.991 44.000 0.00 0.00 0.00 3.34
215 216 3.875727 CCGTGTCTACTCCTTATTCTCGA 59.124 47.826 0.00 0.00 0.00 4.04
216 217 3.626670 ACCGTGTCTACTCCTTATTCTCG 59.373 47.826 0.00 0.00 0.00 4.04
217 218 5.277925 GCTACCGTGTCTACTCCTTATTCTC 60.278 48.000 0.00 0.00 0.00 2.87
218 219 4.579753 GCTACCGTGTCTACTCCTTATTCT 59.420 45.833 0.00 0.00 0.00 2.40
219 220 4.261530 GGCTACCGTGTCTACTCCTTATTC 60.262 50.000 0.00 0.00 0.00 1.75
220 221 3.635836 GGCTACCGTGTCTACTCCTTATT 59.364 47.826 0.00 0.00 0.00 1.40
221 222 3.117587 AGGCTACCGTGTCTACTCCTTAT 60.118 47.826 0.00 0.00 0.00 1.73
222 223 2.240667 AGGCTACCGTGTCTACTCCTTA 59.759 50.000 0.00 0.00 0.00 2.69
224 225 0.624785 AGGCTACCGTGTCTACTCCT 59.375 55.000 0.00 0.00 0.00 3.69
227 228 2.641305 CTACAGGCTACCGTGTCTACT 58.359 52.381 0.00 0.00 40.29 2.57
229 230 1.386533 GCTACAGGCTACCGTGTCTA 58.613 55.000 0.00 0.00 40.29 2.59
230 231 1.321074 GGCTACAGGCTACCGTGTCT 61.321 60.000 0.00 0.00 40.29 3.41
231 232 1.141234 GGCTACAGGCTACCGTGTC 59.859 63.158 0.00 0.00 40.29 3.67
232 233 3.295800 GGCTACAGGCTACCGTGT 58.704 61.111 0.00 0.00 42.26 4.49
243 244 1.379977 CCACGGGAGAGAGGCTACA 60.380 63.158 0.00 0.00 0.00 2.74
245 246 1.076923 GACCACGGGAGAGAGGCTA 60.077 63.158 0.00 0.00 0.00 3.93
246 247 1.572689 TAGACCACGGGAGAGAGGCT 61.573 60.000 0.00 0.00 0.00 4.58
247 248 0.468400 ATAGACCACGGGAGAGAGGC 60.468 60.000 0.00 0.00 0.00 4.70
249 250 0.671251 GCATAGACCACGGGAGAGAG 59.329 60.000 0.00 0.00 0.00 3.20
250 251 0.259065 AGCATAGACCACGGGAGAGA 59.741 55.000 0.00 0.00 0.00 3.10
251 252 1.982660 TAGCATAGACCACGGGAGAG 58.017 55.000 0.00 0.00 0.00 3.20
253 254 2.164624 GCTATAGCATAGACCACGGGAG 59.835 54.545 20.01 0.00 41.59 4.30
254 255 2.168496 GCTATAGCATAGACCACGGGA 58.832 52.381 20.01 0.00 41.59 5.14
256 257 2.094494 CCAGCTATAGCATAGACCACGG 60.094 54.545 26.07 8.27 45.16 4.94
259 260 2.894731 AGCCAGCTATAGCATAGACCA 58.105 47.619 26.07 0.00 45.16 4.02
261 262 5.784177 TGTTTAGCCAGCTATAGCATAGAC 58.216 41.667 26.07 16.56 45.16 2.59
262 263 5.047021 CCTGTTTAGCCAGCTATAGCATAGA 60.047 44.000 26.07 5.00 45.16 1.98
263 264 5.174395 CCTGTTTAGCCAGCTATAGCATAG 58.826 45.833 26.07 14.67 45.16 2.23
265 266 3.808618 GCCTGTTTAGCCAGCTATAGCAT 60.809 47.826 26.07 11.49 45.16 3.79
266 267 2.485479 GCCTGTTTAGCCAGCTATAGCA 60.485 50.000 26.07 2.34 45.16 3.49
267 268 2.147150 GCCTGTTTAGCCAGCTATAGC 58.853 52.381 17.33 17.33 42.49 2.97
984 2129 1.134610 CGGCCTGATTAGTAAACGGGT 60.135 52.381 16.89 0.00 33.13 5.28
1147 2292 3.322828 TCCTACATTTACGGGGCATAGAC 59.677 47.826 0.00 0.00 0.00 2.59
1150 2295 4.986054 AATCCTACATTTACGGGGCATA 57.014 40.909 0.00 0.00 0.00 3.14
1151 2296 3.876309 AATCCTACATTTACGGGGCAT 57.124 42.857 0.00 0.00 0.00 4.40
1152 2297 4.986054 ATAATCCTACATTTACGGGGCA 57.014 40.909 0.00 0.00 0.00 5.36
1153 2298 4.082949 GCAATAATCCTACATTTACGGGGC 60.083 45.833 0.00 0.00 0.00 5.80
1154 2299 5.181245 CAGCAATAATCCTACATTTACGGGG 59.819 44.000 0.00 0.00 0.00 5.73
1155 2300 5.334879 GCAGCAATAATCCTACATTTACGGG 60.335 44.000 0.00 0.00 0.00 5.28
1156 2301 5.334879 GGCAGCAATAATCCTACATTTACGG 60.335 44.000 0.00 0.00 0.00 4.02
1157 2302 5.238432 TGGCAGCAATAATCCTACATTTACG 59.762 40.000 0.00 0.00 0.00 3.18
1158 2303 6.633500 TGGCAGCAATAATCCTACATTTAC 57.367 37.500 0.00 0.00 0.00 2.01
1159 2304 6.239008 GCTTGGCAGCAATAATCCTACATTTA 60.239 38.462 0.00 0.00 46.49 1.40
1160 2305 5.452356 GCTTGGCAGCAATAATCCTACATTT 60.452 40.000 0.00 0.00 46.49 2.32
1161 2306 4.038402 GCTTGGCAGCAATAATCCTACATT 59.962 41.667 0.00 0.00 46.49 2.71
1162 2307 3.571401 GCTTGGCAGCAATAATCCTACAT 59.429 43.478 0.00 0.00 46.49 2.29
1163 2308 2.951642 GCTTGGCAGCAATAATCCTACA 59.048 45.455 0.00 0.00 46.49 2.74
1164 2309 3.632855 GCTTGGCAGCAATAATCCTAC 57.367 47.619 0.00 0.00 46.49 3.18
1253 2403 1.000274 GCATATTGGATTTGGCGGGAC 60.000 52.381 0.00 0.00 0.00 4.46
1306 2456 2.400402 GAGAGCTCCGACGACGAC 59.600 66.667 10.93 0.00 42.66 4.34
1980 3194 3.673809 CGAGTAACTTGTTGTACTGAGGC 59.326 47.826 0.00 0.00 0.00 4.70
2108 3322 1.396301 GAAGATTCAGCTTGCTGTCGG 59.604 52.381 20.20 0.00 0.00 4.79
2140 3354 3.801594 GGCGCAAATTGAACTCTTTTGAA 59.198 39.130 10.83 0.00 33.24 2.69
2234 3448 8.365399 TGCCATTATCGTAGATAAAGAACTTG 57.635 34.615 6.58 0.80 45.12 3.16
2235 3449 7.171678 GCTGCCATTATCGTAGATAAAGAACTT 59.828 37.037 6.58 0.00 45.12 2.66
2359 3654 4.820775 TGGCTTCTCTAATCCTATCCAGT 58.179 43.478 0.00 0.00 0.00 4.00
2364 3659 8.667737 AGATTTTGATGGCTTCTCTAATCCTAT 58.332 33.333 1.86 0.00 0.00 2.57
2365 3660 8.038862 AGATTTTGATGGCTTCTCTAATCCTA 57.961 34.615 1.86 0.00 0.00 2.94
2442 3737 2.780993 GACCGCAAAATCATAACACGG 58.219 47.619 0.00 0.00 44.49 4.94
2450 3745 2.673114 GCCGACGACCGCAAAATCA 61.673 57.895 0.00 0.00 36.84 2.57
2451 3746 1.977594 ATGCCGACGACCGCAAAATC 61.978 55.000 5.03 0.00 36.84 2.17
2452 3747 1.977594 GATGCCGACGACCGCAAAAT 61.978 55.000 5.03 0.00 36.84 1.82
2453 3748 2.666862 ATGCCGACGACCGCAAAA 60.667 55.556 5.03 0.00 36.84 2.44
2454 3749 3.115892 GATGCCGACGACCGCAAA 61.116 61.111 5.03 0.00 36.84 3.68
2455 3750 4.365505 TGATGCCGACGACCGCAA 62.366 61.111 5.03 0.00 36.84 4.85
2456 3751 4.794439 CTGATGCCGACGACCGCA 62.794 66.667 3.40 3.40 36.84 5.69
2458 3753 4.794439 TGCTGATGCCGACGACCG 62.794 66.667 0.00 0.00 38.71 4.79
2459 3754 0.529773 TATTGCTGATGCCGACGACC 60.530 55.000 0.00 0.00 38.71 4.79
2460 3755 0.855349 CTATTGCTGATGCCGACGAC 59.145 55.000 0.00 0.00 38.71 4.34
2461 3756 0.249447 CCTATTGCTGATGCCGACGA 60.249 55.000 0.00 0.00 38.71 4.20
2469 3764 1.417890 CCGTCTTCCCCTATTGCTGAT 59.582 52.381 0.00 0.00 0.00 2.90
2473 3768 1.694696 AGATCCGTCTTCCCCTATTGC 59.305 52.381 0.00 0.00 0.00 3.56
2474 3769 2.700897 ACAGATCCGTCTTCCCCTATTG 59.299 50.000 0.00 0.00 30.42 1.90
2475 3770 3.047695 ACAGATCCGTCTTCCCCTATT 57.952 47.619 0.00 0.00 30.42 1.73
2478 3773 1.196012 GAACAGATCCGTCTTCCCCT 58.804 55.000 0.00 0.00 30.42 4.79
2486 3781 0.544357 TCCCACCAGAACAGATCCGT 60.544 55.000 0.00 0.00 0.00 4.69
2487 3782 0.176680 CTCCCACCAGAACAGATCCG 59.823 60.000 0.00 0.00 0.00 4.18
2495 3790 0.105194 TCAGTCACCTCCCACCAGAA 60.105 55.000 0.00 0.00 0.00 3.02
2497 3792 0.764890 TTTCAGTCACCTCCCACCAG 59.235 55.000 0.00 0.00 0.00 4.00
2507 3802 2.744202 ACCGAGCATCAATTTCAGTCAC 59.256 45.455 0.00 0.00 33.17 3.67
2508 3803 2.743664 CACCGAGCATCAATTTCAGTCA 59.256 45.455 0.00 0.00 33.17 3.41
2554 3849 0.965866 ACAGATTCGACAGAGGGCGA 60.966 55.000 0.00 0.00 34.32 5.54
2562 3857 1.272490 GAGGGTGTGACAGATTCGACA 59.728 52.381 0.00 0.00 0.00 4.35
2566 3861 2.503356 AGGATGAGGGTGTGACAGATTC 59.497 50.000 0.00 0.00 0.00 2.52
2575 3870 3.197927 AGAAGAAGAGGATGAGGGTGT 57.802 47.619 0.00 0.00 0.00 4.16
2577 3872 4.073425 AGAAGAAGAAGAGGATGAGGGT 57.927 45.455 0.00 0.00 0.00 4.34
2581 3876 4.323333 CCAGCAAGAAGAAGAAGAGGATGA 60.323 45.833 0.00 0.00 0.00 2.92
2657 3953 5.922053 TCAAGGATTCATCTCACATACCTG 58.078 41.667 0.00 0.00 0.00 4.00
2658 3954 6.385176 TCTTCAAGGATTCATCTCACATACCT 59.615 38.462 0.00 0.00 0.00 3.08
2759 4056 3.845259 GCCGCCGACAGGGATGTA 61.845 66.667 0.00 0.00 38.47 2.29
2795 4092 2.795121 CGAGAAAACCGCAAGATCTG 57.205 50.000 0.00 0.00 43.02 2.90
2819 4118 2.126031 GACCGCAACTCCGAGACC 60.126 66.667 1.33 0.00 0.00 3.85
2820 4119 1.444553 CTGACCGCAACTCCGAGAC 60.445 63.158 1.33 0.00 0.00 3.36
2829 4128 1.533625 CATTTCCTTCCTGACCGCAA 58.466 50.000 0.00 0.00 0.00 4.85
2831 4130 1.032114 CCCATTTCCTTCCTGACCGC 61.032 60.000 0.00 0.00 0.00 5.68
2832 4131 0.618458 TCCCATTTCCTTCCTGACCG 59.382 55.000 0.00 0.00 0.00 4.79
2833 4132 1.064389 CCTCCCATTTCCTTCCTGACC 60.064 57.143 0.00 0.00 0.00 4.02
2842 4141 1.762708 TTGAATCGCCTCCCATTTCC 58.237 50.000 0.00 0.00 0.00 3.13
2843 4142 4.391405 AATTTGAATCGCCTCCCATTTC 57.609 40.909 0.00 0.00 0.00 2.17
2844 4143 4.677779 CGAAATTTGAATCGCCTCCCATTT 60.678 41.667 0.00 0.00 31.71 2.32
2845 4144 3.181487 CGAAATTTGAATCGCCTCCCATT 60.181 43.478 0.00 0.00 31.71 3.16
2846 4145 2.358898 CGAAATTTGAATCGCCTCCCAT 59.641 45.455 0.00 0.00 31.71 4.00
2847 4146 1.742831 CGAAATTTGAATCGCCTCCCA 59.257 47.619 0.00 0.00 31.71 4.37
2849 4148 3.757745 TTCGAAATTTGAATCGCCTCC 57.242 42.857 0.00 0.00 38.87 4.30
2850 4149 4.037690 CCATTCGAAATTTGAATCGCCTC 58.962 43.478 0.00 0.00 38.87 4.70
2851 4150 3.734902 GCCATTCGAAATTTGAATCGCCT 60.735 43.478 12.61 0.00 34.97 5.52
2852 4151 2.535574 GCCATTCGAAATTTGAATCGCC 59.464 45.455 12.61 0.00 34.97 5.54
2853 4152 3.438360 AGCCATTCGAAATTTGAATCGC 58.562 40.909 14.94 14.94 39.34 4.58
2854 4153 5.335127 AGAAGCCATTCGAAATTTGAATCG 58.665 37.500 0.00 1.24 40.58 3.34
2855 4154 5.745769 GGAGAAGCCATTCGAAATTTGAATC 59.254 40.000 0.00 0.00 40.58 2.52
2856 4155 5.420104 AGGAGAAGCCATTCGAAATTTGAAT 59.580 36.000 0.00 2.70 40.58 2.57
2857 4156 4.766891 AGGAGAAGCCATTCGAAATTTGAA 59.233 37.500 0.00 0.00 40.58 2.69
2858 4157 4.335416 AGGAGAAGCCATTCGAAATTTGA 58.665 39.130 0.00 0.00 40.58 2.69
2859 4158 4.439289 GGAGGAGAAGCCATTCGAAATTTG 60.439 45.833 0.00 0.00 40.58 2.32
2860 4159 3.696548 GGAGGAGAAGCCATTCGAAATTT 59.303 43.478 0.00 0.00 40.58 1.82
2861 4160 3.282885 GGAGGAGAAGCCATTCGAAATT 58.717 45.455 0.00 0.00 40.58 1.82
2862 4161 2.422093 GGGAGGAGAAGCCATTCGAAAT 60.422 50.000 0.00 0.00 40.58 2.17
2863 4162 1.065418 GGGAGGAGAAGCCATTCGAAA 60.065 52.381 0.00 0.00 40.58 3.46
2864 4163 0.541863 GGGAGGAGAAGCCATTCGAA 59.458 55.000 0.00 0.00 40.58 3.71
2865 4164 0.617535 TGGGAGGAGAAGCCATTCGA 60.618 55.000 0.00 0.00 40.58 3.71
2866 4165 0.462759 GTGGGAGGAGAAGCCATTCG 60.463 60.000 0.00 0.00 40.58 3.34
2867 4166 0.620556 TGTGGGAGGAGAAGCCATTC 59.379 55.000 0.00 0.00 40.02 2.67
2868 4167 1.005215 CTTGTGGGAGGAGAAGCCATT 59.995 52.381 0.00 0.00 40.02 3.16
2869 4168 0.622665 CTTGTGGGAGGAGAAGCCAT 59.377 55.000 0.00 0.00 40.02 4.40
2870 4169 1.492133 CCTTGTGGGAGGAGAAGCCA 61.492 60.000 0.00 0.00 39.25 4.75
2871 4170 1.301293 CCTTGTGGGAGGAGAAGCC 59.699 63.158 0.00 0.00 39.25 4.35
2872 4171 0.322008 CACCTTGTGGGAGGAGAAGC 60.322 60.000 0.00 0.00 39.25 3.86
2873 4172 3.944476 CACCTTGTGGGAGGAGAAG 57.056 57.895 0.00 0.00 39.25 2.85
2883 4182 1.597027 GTCACGACCCCACCTTGTG 60.597 63.158 0.00 0.00 0.00 3.33
2884 4183 2.040009 CTGTCACGACCCCACCTTGT 62.040 60.000 0.00 0.00 0.00 3.16
2885 4184 1.301716 CTGTCACGACCCCACCTTG 60.302 63.158 0.00 0.00 0.00 3.61
2886 4185 3.148084 CTGTCACGACCCCACCTT 58.852 61.111 0.00 0.00 0.00 3.50
2887 4186 3.626924 GCTGTCACGACCCCACCT 61.627 66.667 0.00 0.00 0.00 4.00
2888 4187 3.883744 CTGCTGTCACGACCCCACC 62.884 68.421 0.00 0.00 0.00 4.61
2889 4188 1.812686 TACTGCTGTCACGACCCCAC 61.813 60.000 0.00 0.00 0.00 4.61
2890 4189 1.532078 TACTGCTGTCACGACCCCA 60.532 57.895 0.00 0.00 0.00 4.96
2891 4190 1.080025 GTACTGCTGTCACGACCCC 60.080 63.158 0.00 0.00 0.00 4.95
2892 4191 0.388649 CTGTACTGCTGTCACGACCC 60.389 60.000 0.00 0.00 0.00 4.46
2893 4192 0.388649 CCTGTACTGCTGTCACGACC 60.389 60.000 0.00 0.00 0.00 4.79
2894 4193 0.314302 ACCTGTACTGCTGTCACGAC 59.686 55.000 0.00 0.00 0.00 4.34
2895 4194 1.900245 TACCTGTACTGCTGTCACGA 58.100 50.000 0.00 0.00 0.00 4.35
2896 4195 2.530177 CATACCTGTACTGCTGTCACG 58.470 52.381 0.00 0.00 0.00 4.35
2897 4196 2.418746 CCCATACCTGTACTGCTGTCAC 60.419 54.545 0.00 0.00 0.00 3.67
2898 4197 1.831106 CCCATACCTGTACTGCTGTCA 59.169 52.381 0.00 0.00 0.00 3.58
2899 4198 1.473434 GCCCATACCTGTACTGCTGTC 60.473 57.143 0.00 0.00 0.00 3.51
2900 4199 0.541863 GCCCATACCTGTACTGCTGT 59.458 55.000 0.66 0.66 0.00 4.40
2901 4200 0.179045 GGCCCATACCTGTACTGCTG 60.179 60.000 0.00 0.00 0.00 4.41
2902 4201 1.686325 CGGCCCATACCTGTACTGCT 61.686 60.000 0.00 0.00 0.00 4.24
2903 4202 1.227556 CGGCCCATACCTGTACTGC 60.228 63.158 0.00 0.00 0.00 4.40
2904 4203 1.227556 GCGGCCCATACCTGTACTG 60.228 63.158 0.00 0.00 0.00 2.74
2905 4204 2.440817 GGCGGCCCATACCTGTACT 61.441 63.158 8.12 0.00 0.00 2.73
2906 4205 2.110420 GGCGGCCCATACCTGTAC 59.890 66.667 8.12 0.00 0.00 2.90
2907 4206 3.542676 CGGCGGCCCATACCTGTA 61.543 66.667 14.55 0.00 0.00 2.74
2919 4218 2.060004 TATTCAGAGACGAGCGGCGG 62.060 60.000 9.78 0.00 46.49 6.13
2921 4220 0.930742 CGTATTCAGAGACGAGCGGC 60.931 60.000 0.00 0.00 42.80 6.53
2922 4221 0.377554 ACGTATTCAGAGACGAGCGG 59.622 55.000 12.56 0.00 42.80 5.52
2923 4222 3.219189 CATACGTATTCAGAGACGAGCG 58.781 50.000 5.03 0.00 42.80 5.03
2924 4223 2.974536 GCATACGTATTCAGAGACGAGC 59.025 50.000 5.03 0.00 42.80 5.03
2925 4224 3.059800 TCGCATACGTATTCAGAGACGAG 60.060 47.826 5.03 0.00 42.80 4.18
2926 4225 2.867975 TCGCATACGTATTCAGAGACGA 59.132 45.455 5.03 5.52 42.80 4.20
2927 4226 3.219189 CTCGCATACGTATTCAGAGACG 58.781 50.000 19.18 10.83 45.44 4.18
2928 4227 3.556513 CCTCGCATACGTATTCAGAGAC 58.443 50.000 22.89 4.66 41.18 3.36
2929 4228 2.552743 CCCTCGCATACGTATTCAGAGA 59.447 50.000 22.89 12.72 41.18 3.10
2930 4229 2.293677 ACCCTCGCATACGTATTCAGAG 59.706 50.000 17.90 17.90 41.18 3.35
2931 4230 2.304092 ACCCTCGCATACGTATTCAGA 58.696 47.619 5.03 4.92 41.18 3.27
2932 4231 2.794910 CAACCCTCGCATACGTATTCAG 59.205 50.000 5.03 1.99 41.18 3.02
2933 4232 2.482316 CCAACCCTCGCATACGTATTCA 60.482 50.000 5.03 0.00 41.18 2.57
2934 4233 2.132762 CCAACCCTCGCATACGTATTC 58.867 52.381 5.03 0.00 41.18 1.75
2935 4234 1.758280 TCCAACCCTCGCATACGTATT 59.242 47.619 5.03 0.00 41.18 1.89
2936 4235 1.068127 GTCCAACCCTCGCATACGTAT 59.932 52.381 1.14 1.14 41.18 3.06
2937 4236 0.457035 GTCCAACCCTCGCATACGTA 59.543 55.000 0.00 0.00 41.18 3.57
2938 4237 1.217244 GTCCAACCCTCGCATACGT 59.783 57.895 0.00 0.00 41.18 3.57
2939 4238 0.527817 GAGTCCAACCCTCGCATACG 60.528 60.000 0.00 0.00 42.01 3.06
2940 4239 0.824759 AGAGTCCAACCCTCGCATAC 59.175 55.000 0.00 0.00 34.08 2.39
2941 4240 0.824109 CAGAGTCCAACCCTCGCATA 59.176 55.000 0.00 0.00 34.08 3.14
2942 4241 1.194781 ACAGAGTCCAACCCTCGCAT 61.195 55.000 0.00 0.00 34.08 4.73
2943 4242 0.541063 TACAGAGTCCAACCCTCGCA 60.541 55.000 0.00 0.00 34.08 5.10
2944 4243 0.824759 ATACAGAGTCCAACCCTCGC 59.175 55.000 0.00 0.00 34.08 5.03
2945 4244 2.496070 TGAATACAGAGTCCAACCCTCG 59.504 50.000 0.00 0.00 34.08 4.63
2946 4245 4.698575 GATGAATACAGAGTCCAACCCTC 58.301 47.826 0.00 0.00 0.00 4.30
2947 4246 3.133003 CGATGAATACAGAGTCCAACCCT 59.867 47.826 0.00 0.00 0.00 4.34
2948 4247 3.458189 CGATGAATACAGAGTCCAACCC 58.542 50.000 0.00 0.00 0.00 4.11
2949 4248 2.866762 GCGATGAATACAGAGTCCAACC 59.133 50.000 0.00 0.00 0.00 3.77
2950 4249 2.535984 CGCGATGAATACAGAGTCCAAC 59.464 50.000 0.00 0.00 0.00 3.77
2951 4250 2.165641 ACGCGATGAATACAGAGTCCAA 59.834 45.455 15.93 0.00 0.00 3.53
2952 4251 1.749063 ACGCGATGAATACAGAGTCCA 59.251 47.619 15.93 0.00 0.00 4.02
2953 4252 2.120232 CACGCGATGAATACAGAGTCC 58.880 52.381 15.93 0.00 0.00 3.85
2954 4253 1.518929 GCACGCGATGAATACAGAGTC 59.481 52.381 15.93 0.00 0.00 3.36
2955 4254 1.135139 AGCACGCGATGAATACAGAGT 59.865 47.619 15.93 0.00 0.00 3.24
2956 4255 1.520174 CAGCACGCGATGAATACAGAG 59.480 52.381 15.93 0.00 0.00 3.35
2957 4256 1.559831 CAGCACGCGATGAATACAGA 58.440 50.000 15.93 0.00 0.00 3.41
2958 4257 0.578683 CCAGCACGCGATGAATACAG 59.421 55.000 15.93 0.00 0.00 2.74
2959 4258 0.108377 ACCAGCACGCGATGAATACA 60.108 50.000 15.93 0.00 0.00 2.29
2960 4259 1.006832 AACCAGCACGCGATGAATAC 58.993 50.000 15.93 0.00 0.00 1.89
2961 4260 1.396648 CAAACCAGCACGCGATGAATA 59.603 47.619 15.93 0.00 0.00 1.75
2962 4261 0.168788 CAAACCAGCACGCGATGAAT 59.831 50.000 15.93 0.00 0.00 2.57
2963 4262 1.573932 CAAACCAGCACGCGATGAA 59.426 52.632 15.93 0.00 0.00 2.57
2964 4263 2.324330 CCAAACCAGCACGCGATGA 61.324 57.895 15.93 0.00 0.00 2.92
2965 4264 1.851021 TTCCAAACCAGCACGCGATG 61.851 55.000 15.93 8.90 0.00 3.84
2966 4265 1.169661 TTTCCAAACCAGCACGCGAT 61.170 50.000 15.93 0.00 0.00 4.58
2967 4266 1.377366 TTTTCCAAACCAGCACGCGA 61.377 50.000 15.93 0.00 0.00 5.87
2968 4267 0.934436 CTTTTCCAAACCAGCACGCG 60.934 55.000 3.53 3.53 0.00 6.01
2969 4268 0.597377 CCTTTTCCAAACCAGCACGC 60.597 55.000 0.00 0.00 0.00 5.34
2970 4269 1.028905 TCCTTTTCCAAACCAGCACG 58.971 50.000 0.00 0.00 0.00 5.34
2971 4270 2.867647 GCATCCTTTTCCAAACCAGCAC 60.868 50.000 0.00 0.00 0.00 4.40
2972 4271 1.344114 GCATCCTTTTCCAAACCAGCA 59.656 47.619 0.00 0.00 0.00 4.41
2973 4272 1.669795 CGCATCCTTTTCCAAACCAGC 60.670 52.381 0.00 0.00 0.00 4.85
2974 4273 1.885887 TCGCATCCTTTTCCAAACCAG 59.114 47.619 0.00 0.00 0.00 4.00
2975 4274 1.885887 CTCGCATCCTTTTCCAAACCA 59.114 47.619 0.00 0.00 0.00 3.67
2976 4275 1.202348 CCTCGCATCCTTTTCCAAACC 59.798 52.381 0.00 0.00 0.00 3.27
2977 4276 1.886542 ACCTCGCATCCTTTTCCAAAC 59.113 47.619 0.00 0.00 0.00 2.93
2978 4277 1.885887 CACCTCGCATCCTTTTCCAAA 59.114 47.619 0.00 0.00 0.00 3.28
2979 4278 1.533625 CACCTCGCATCCTTTTCCAA 58.466 50.000 0.00 0.00 0.00 3.53
2980 4279 0.322456 CCACCTCGCATCCTTTTCCA 60.322 55.000 0.00 0.00 0.00 3.53
2981 4280 1.032114 CCCACCTCGCATCCTTTTCC 61.032 60.000 0.00 0.00 0.00 3.13
2982 4281 1.032114 CCCCACCTCGCATCCTTTTC 61.032 60.000 0.00 0.00 0.00 2.29
2983 4282 1.000896 CCCCACCTCGCATCCTTTT 60.001 57.895 0.00 0.00 0.00 2.27
2984 4283 2.198304 GACCCCACCTCGCATCCTTT 62.198 60.000 0.00 0.00 0.00 3.11
2985 4284 2.610859 ACCCCACCTCGCATCCTT 60.611 61.111 0.00 0.00 0.00 3.36
2986 4285 3.083997 GACCCCACCTCGCATCCT 61.084 66.667 0.00 0.00 0.00 3.24
2987 4286 4.530857 CGACCCCACCTCGCATCC 62.531 72.222 0.00 0.00 0.00 3.51
2988 4287 4.530857 CCGACCCCACCTCGCATC 62.531 72.222 0.00 0.00 0.00 3.91
2992 4291 3.760035 CACTCCGACCCCACCTCG 61.760 72.222 0.00 0.00 0.00 4.63
2993 4292 1.477685 TTTCACTCCGACCCCACCTC 61.478 60.000 0.00 0.00 0.00 3.85
2994 4293 0.840722 ATTTCACTCCGACCCCACCT 60.841 55.000 0.00 0.00 0.00 4.00
2995 4294 0.676782 CATTTCACTCCGACCCCACC 60.677 60.000 0.00 0.00 0.00 4.61
2996 4295 1.305930 GCATTTCACTCCGACCCCAC 61.306 60.000 0.00 0.00 0.00 4.61
2997 4296 1.002624 GCATTTCACTCCGACCCCA 60.003 57.895 0.00 0.00 0.00 4.96
2998 4297 1.749258 GGCATTTCACTCCGACCCC 60.749 63.158 0.00 0.00 0.00 4.95
2999 4298 1.002624 TGGCATTTCACTCCGACCC 60.003 57.895 0.00 0.00 0.00 4.46
3000 4299 1.305930 GGTGGCATTTCACTCCGACC 61.306 60.000 0.00 0.00 37.75 4.79
3001 4300 0.321653 AGGTGGCATTTCACTCCGAC 60.322 55.000 0.00 0.00 37.75 4.79
3002 4301 0.321564 CAGGTGGCATTTCACTCCGA 60.322 55.000 0.00 0.00 37.75 4.55
3003 4302 1.308069 CCAGGTGGCATTTCACTCCG 61.308 60.000 0.00 0.00 37.75 4.63
3004 4303 0.967380 CCCAGGTGGCATTTCACTCC 60.967 60.000 0.00 0.00 37.75 3.85
3005 4304 2.571548 CCCAGGTGGCATTTCACTC 58.428 57.895 0.00 0.00 37.75 3.51
3006 4305 4.850193 CCCAGGTGGCATTTCACT 57.150 55.556 0.00 0.00 37.75 3.41
3029 4328 3.682292 GATCCACACCAGCCGGACC 62.682 68.421 5.05 0.00 35.59 4.46
3030 4329 2.125106 GATCCACACCAGCCGGAC 60.125 66.667 5.05 0.00 35.59 4.79
3031 4330 3.399181 GGATCCACACCAGCCGGA 61.399 66.667 5.05 0.00 35.59 5.14
3032 4331 3.716195 TGGATCCACACCAGCCGG 61.716 66.667 11.44 0.00 38.77 6.13
3033 4332 2.436646 GTGGATCCACACCAGCCG 60.437 66.667 35.21 0.00 45.53 5.52
3041 4340 3.188786 GAGCGCGTGTGGATCCAC 61.189 66.667 33.97 33.97 46.33 4.02
3042 4341 4.794439 CGAGCGCGTGTGGATCCA 62.794 66.667 11.44 11.44 0.00 3.41
3055 4354 2.083835 TATCCCAACCGCTAGCGAGC 62.084 60.000 37.39 9.01 46.00 5.03
3056 4355 0.039074 CTATCCCAACCGCTAGCGAG 60.039 60.000 37.39 27.48 42.83 5.03
3057 4356 2.038690 CTATCCCAACCGCTAGCGA 58.961 57.895 37.39 17.58 42.83 4.93
3058 4357 1.664965 GCTATCCCAACCGCTAGCG 60.665 63.158 29.93 29.93 39.44 4.26
3059 4358 1.301795 GGCTATCCCAACCGCTAGC 60.302 63.158 4.06 4.06 36.66 3.42
3060 4359 1.006102 CGGCTATCCCAACCGCTAG 60.006 63.158 0.00 0.00 40.55 3.42
3061 4360 3.134879 CGGCTATCCCAACCGCTA 58.865 61.111 0.00 0.00 40.55 4.26
3065 4364 1.819632 CACAGCGGCTATCCCAACC 60.820 63.158 0.26 0.00 0.00 3.77
3066 4365 0.392461 TTCACAGCGGCTATCCCAAC 60.392 55.000 0.26 0.00 0.00 3.77
3067 4366 0.392461 GTTCACAGCGGCTATCCCAA 60.392 55.000 0.26 0.00 0.00 4.12
3068 4367 1.220749 GTTCACAGCGGCTATCCCA 59.779 57.895 0.26 0.00 0.00 4.37
3069 4368 1.883084 CGTTCACAGCGGCTATCCC 60.883 63.158 0.26 0.00 0.00 3.85
3070 4369 1.883084 CCGTTCACAGCGGCTATCC 60.883 63.158 0.26 0.00 42.82 2.59
3071 4370 3.706140 CCGTTCACAGCGGCTATC 58.294 61.111 0.26 0.00 42.82 2.08
3077 4376 4.409588 CGCGTTCCGTTCACAGCG 62.410 66.667 0.00 0.00 41.56 5.18
3078 4377 2.096481 TTTCGCGTTCCGTTCACAGC 62.096 55.000 5.77 0.00 38.35 4.40
3079 4378 0.111266 CTTTCGCGTTCCGTTCACAG 60.111 55.000 5.77 0.00 38.35 3.66
3080 4379 0.806884 ACTTTCGCGTTCCGTTCACA 60.807 50.000 5.77 0.00 38.35 3.58
3081 4380 1.130955 TACTTTCGCGTTCCGTTCAC 58.869 50.000 5.77 0.00 38.35 3.18
3082 4381 1.850377 TTACTTTCGCGTTCCGTTCA 58.150 45.000 5.77 0.00 38.35 3.18
3083 4382 2.928295 TTTACTTTCGCGTTCCGTTC 57.072 45.000 5.77 0.00 38.35 3.95
3084 4383 2.865551 TCTTTTACTTTCGCGTTCCGTT 59.134 40.909 5.77 0.00 38.35 4.44
3085 4384 2.219445 GTCTTTTACTTTCGCGTTCCGT 59.781 45.455 5.77 2.07 38.35 4.69
3086 4385 2.473984 AGTCTTTTACTTTCGCGTTCCG 59.526 45.455 5.77 0.00 33.35 4.30
3087 4386 4.463515 AAGTCTTTTACTTTCGCGTTCC 57.536 40.909 5.77 0.00 46.61 3.62
3097 4396 7.222031 GGCAAAATCACGAAAAAGTCTTTTACT 59.778 33.333 10.94 0.00 41.49 2.24
3098 4397 7.334749 GGCAAAATCACGAAAAAGTCTTTTAC 58.665 34.615 10.94 0.00 34.83 2.01
3099 4398 6.477360 GGGCAAAATCACGAAAAAGTCTTTTA 59.523 34.615 10.94 0.00 34.83 1.52
3100 4399 5.293324 GGGCAAAATCACGAAAAAGTCTTTT 59.707 36.000 4.66 4.66 37.46 2.27
3101 4400 4.808895 GGGCAAAATCACGAAAAAGTCTTT 59.191 37.500 0.00 0.00 0.00 2.52
3102 4401 4.368315 GGGCAAAATCACGAAAAAGTCTT 58.632 39.130 0.00 0.00 0.00 3.01
3103 4402 3.243737 GGGGCAAAATCACGAAAAAGTCT 60.244 43.478 0.00 0.00 0.00 3.24
3104 4403 3.057019 GGGGCAAAATCACGAAAAAGTC 58.943 45.455 0.00 0.00 0.00 3.01
3105 4404 2.224185 GGGGGCAAAATCACGAAAAAGT 60.224 45.455 0.00 0.00 0.00 2.66
3106 4405 2.037121 AGGGGGCAAAATCACGAAAAAG 59.963 45.455 0.00 0.00 0.00 2.27
3107 4406 2.036604 GAGGGGGCAAAATCACGAAAAA 59.963 45.455 0.00 0.00 0.00 1.94
3108 4407 1.616374 GAGGGGGCAAAATCACGAAAA 59.384 47.619 0.00 0.00 0.00 2.29
3109 4408 1.253100 GAGGGGGCAAAATCACGAAA 58.747 50.000 0.00 0.00 0.00 3.46
3110 4409 0.958382 CGAGGGGGCAAAATCACGAA 60.958 55.000 0.00 0.00 0.00 3.85
3111 4410 1.376683 CGAGGGGGCAAAATCACGA 60.377 57.895 0.00 0.00 0.00 4.35
3112 4411 2.406616 CCGAGGGGGCAAAATCACG 61.407 63.158 0.00 0.00 0.00 4.35
3113 4412 3.603365 CCGAGGGGGCAAAATCAC 58.397 61.111 0.00 0.00 0.00 3.06
3220 4520 1.303317 GGGATGGTTCCACAGCGTT 60.303 57.895 0.00 0.00 44.60 4.84
3225 4525 1.667595 TCATGAGGGATGGTTCCACA 58.332 50.000 0.00 0.00 44.60 4.17
3275 4575 2.094545 GCGGTCCAGATGCTTTTGAAAT 60.095 45.455 0.00 0.00 0.00 2.17
3346 4646 0.320771 ACGCGCCTCTTGAACTTGAT 60.321 50.000 5.73 0.00 0.00 2.57
3378 4686 3.118298 TGATCGGATCTTTCCAATCAGCA 60.118 43.478 18.16 0.00 39.94 4.41
3426 4734 2.271800 GTGTCATCAACTCCTAAGCCG 58.728 52.381 0.00 0.00 0.00 5.52
3555 4863 1.003580 CAGTGTGTTACCTGGCCTGAT 59.996 52.381 11.88 0.00 0.00 2.90
3560 4868 2.038033 TCTTACCAGTGTGTTACCTGGC 59.962 50.000 5.63 0.00 40.41 4.85
3561 4869 4.223032 AGATCTTACCAGTGTGTTACCTGG 59.777 45.833 4.20 4.20 42.31 4.45
3586 4896 2.480255 TAAAAGAGGGGGAGGGGCGA 62.480 60.000 0.00 0.00 0.00 5.54
3588 4898 1.212250 TGTAAAAGAGGGGGAGGGGC 61.212 60.000 0.00 0.00 0.00 5.80
3629 4939 6.874288 ACGTTCTGTTAGTGTCTTACTACT 57.126 37.500 0.00 0.00 41.48 2.57
3631 4941 9.831737 GATTTACGTTCTGTTAGTGTCTTACTA 57.168 33.333 0.00 0.00 40.89 1.82
3633 4943 8.511465 TGATTTACGTTCTGTTAGTGTCTTAC 57.489 34.615 0.00 0.00 0.00 2.34
3634 4944 9.531942 TTTGATTTACGTTCTGTTAGTGTCTTA 57.468 29.630 0.00 0.00 0.00 2.10
3635 4945 8.428186 TTTGATTTACGTTCTGTTAGTGTCTT 57.572 30.769 0.00 0.00 0.00 3.01
3636 4946 8.333186 GTTTTGATTTACGTTCTGTTAGTGTCT 58.667 33.333 0.00 0.00 0.00 3.41
3637 4947 7.585210 GGTTTTGATTTACGTTCTGTTAGTGTC 59.415 37.037 0.00 0.00 0.00 3.67
3638 4948 7.066043 TGGTTTTGATTTACGTTCTGTTAGTGT 59.934 33.333 0.00 0.00 0.00 3.55
3647 4957 7.471657 AATTTGGTGGTTTTGATTTACGTTC 57.528 32.000 0.00 0.00 0.00 3.95
3732 5137 0.409092 TGTGGTGCTTCCCCATCAAT 59.591 50.000 0.00 0.00 33.76 2.57
3760 5165 6.423302 GGAGTATGTTCATCATTGAGCAGTAG 59.577 42.308 0.00 0.00 44.80 2.57
3763 5168 4.514441 GGGAGTATGTTCATCATTGAGCAG 59.486 45.833 0.00 0.00 44.80 4.24
3808 5213 2.091555 AGTAAAGGTTGCACTTTGGGGA 60.092 45.455 11.49 0.00 40.64 4.81
3951 5455 8.204836 ACCATGTGTAGGTAATCTTGAAGTATC 58.795 37.037 0.00 0.00 37.67 2.24
3958 5462 7.040755 TGTGAAAACCATGTGTAGGTAATCTTG 60.041 37.037 0.00 0.00 38.76 3.02
4016 6059 9.919348 CAATTAACATTTTGGAAACTTTGACTG 57.081 29.630 0.00 0.00 0.00 3.51
4028 6071 7.330262 AGGCATAGGTTCAATTAACATTTTGG 58.670 34.615 0.00 0.00 40.08 3.28
4029 6072 8.034215 TGAGGCATAGGTTCAATTAACATTTTG 58.966 33.333 0.00 0.00 40.08 2.44
4061 6105 3.572584 TCCGCTAGTTCTCGAAAAGTTC 58.427 45.455 0.00 0.00 0.00 3.01
4070 6114 2.345124 TACTCCCTCCGCTAGTTCTC 57.655 55.000 0.00 0.00 0.00 2.87
4079 6123 5.322754 TCTCAGGTTATTATACTCCCTCCG 58.677 45.833 0.00 0.00 0.00 4.63
4109 6156 5.491982 ACAAACTGCTAACTTGGATAGGAG 58.508 41.667 1.22 1.22 42.54 3.69
4110 6157 5.499004 ACAAACTGCTAACTTGGATAGGA 57.501 39.130 0.00 0.00 0.00 2.94
4117 6164 4.351192 AGCGAAAACAAACTGCTAACTTG 58.649 39.130 0.00 0.00 33.37 3.16
4275 6378 5.928264 ACTGTTAAGCCAAAATCATTCAAGC 59.072 36.000 0.00 0.00 0.00 4.01
4304 6407 9.846248 AAGCATTACAAATTCAACTGATCTAAC 57.154 29.630 0.00 0.00 0.00 2.34
4357 6460 8.786838 ACCCAGGCCCAAATATAAAATAAAATT 58.213 29.630 0.00 0.00 0.00 1.82
4401 6517 4.524316 TCATTTGGGTGAAGCTTTCATG 57.476 40.909 0.00 0.00 42.47 3.07
4402 6518 5.750352 AATCATTTGGGTGAAGCTTTCAT 57.250 34.783 0.00 0.00 42.47 2.57
4442 6558 6.367969 CCGGTAGATATTTAAGAAATGGACCG 59.632 42.308 14.91 14.91 39.69 4.79
4464 6586 1.094785 CAACCATAAGGCTCAACCGG 58.905 55.000 0.00 0.00 46.52 5.28
4465 6587 1.821216 ACAACCATAAGGCTCAACCG 58.179 50.000 0.00 0.00 46.52 4.44
4472 6594 2.562738 AGAAGCCAAACAACCATAAGGC 59.437 45.455 0.00 0.00 42.31 4.35
4524 6648 9.660180 TTTTAAAGAAAAGCCAACAAAGTGTAT 57.340 25.926 0.00 0.00 30.89 2.29
4555 6679 9.308318 GCTAATTAAAACAAGTCAAAACCAAGA 57.692 29.630 0.00 0.00 0.00 3.02
4556 6680 9.313118 AGCTAATTAAAACAAGTCAAAACCAAG 57.687 29.630 0.00 0.00 0.00 3.61
4557 6681 9.092876 CAGCTAATTAAAACAAGTCAAAACCAA 57.907 29.630 0.00 0.00 0.00 3.67
4559 6683 7.923878 TCCAGCTAATTAAAACAAGTCAAAACC 59.076 33.333 0.00 0.00 0.00 3.27
4588 6765 8.746052 TTCAAGAAAGACTTTTTCCACAGATA 57.254 30.769 1.12 0.00 36.61 1.98
4593 6770 7.264947 TCCATTTCAAGAAAGACTTTTTCCAC 58.735 34.615 1.12 0.00 36.61 4.02
4600 6779 7.830099 ATGAGTTCCATTTCAAGAAAGACTT 57.170 32.000 1.48 0.00 33.46 3.01
4601 6780 7.939039 TGTATGAGTTCCATTTCAAGAAAGACT 59.061 33.333 1.48 3.26 36.71 3.24
4613 6792 7.172868 TGCATTTTGATGTATGAGTTCCATT 57.827 32.000 0.00 0.00 36.71 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.