AutoCloner

Multiple sequence alignment - TraesCS6A01G164700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G164700	chr6A	100.000	2870	0	0	1	2870	162557345	162554476	0.000000e+00	5301.0
1	TraesCS6A01G164700	chr6A	97.132	802	18	2	1	800	162663691	162662893	0.000000e+00	1349.0
2	TraesCS6A01G164700	chr6A	97.019	805	16	2	1	800	162731093	162730292	0.000000e+00	1347.0
3	TraesCS6A01G164700	chr6A	97.619	42	1	0	636	677	162556547	162556506	3.970000e-09	73.1
4	TraesCS6A01G164700	chr6A	97.619	42	1	0	799	840	162556710	162556669	3.970000e-09	73.1
5	TraesCS6A01G164700	chr6A	97.619	42	1	0	799	840	162663057	162663016	3.970000e-09	73.1
6	TraesCS6A01G164700	chr6A	97.619	42	1	0	799	840	162730456	162730415	3.970000e-09	73.1
7	TraesCS6A01G164700	chr7A	97.980	1188	24	0	880	2067	681200894	681199707	0.000000e+00	2061.0
8	TraesCS6A01G164700	chr7A	98.520	811	11	1	2060	2870	681188468	681187659	0.000000e+00	1430.0
9	TraesCS6A01G164700	chr4B	73.848	1866	428	51	1030	2865	174697333	174699168	0.000000e+00	688.0
10	TraesCS6A01G164700	chr5A	89.055	402	22	7	1	381	685985449	685985849	2.000000e-131	479.0
11	TraesCS6A01G164700	chr1B	88.586	403	23	4	1	381	670970621	670971022	4.330000e-128	468.0
12	TraesCS6A01G164700	chr3B	88.206	407	23	6	1	386	807192153	807192555	2.010000e-126	462.0
13	TraesCS6A01G164700	chr3B	75.410	305	63	11	2287	2585	815484605	815484307	1.390000e-28	137.0
14	TraesCS6A01G164700	chr2D	87.841	403	26	4	1	381	304427856	304428257	4.360000e-123	451.0
15	TraesCS6A01G164700	chr1A	87.407	405	27	4	1	384	521908809	521908408	7.300000e-121	444.0
16	TraesCS6A01G164700	chr6D	86.035	401	31	5	1	380	313161273	313160877	9.570000e-110	407.0
17	TraesCS6A01G164700	chr6D	72.061	587	147	17	2290	2868	378435994	378435417	2.960000e-35	159.0
18	TraesCS6A01G164700	chr6D	84.967	153	20	2	467	618	121331903	121332053	4.950000e-33	152.0
19	TraesCS6A01G164700	chr6D	92.135	89	7	0	712	800	121465420	121465332	3.000000e-25	126.0
20	TraesCS6A01G164700	chr6D	74.194	310	64	12	2287	2588	371955751	371955450	6.500000e-22	115.0
21	TraesCS6A01G164700	chr6D	87.500	96	10	2	601	696	121332202	121332295	3.020000e-20	110.0
22	TraesCS6A01G164700	chr7B	84.783	322	24	5	81	381	743854268	743853951	1.670000e-77	300.0
23	TraesCS6A01G164700	chr7B	73.391	233	60	2	2356	2588	371465067	371464837	5.090000e-13	86.1
24	TraesCS6A01G164700	chr5B	78.740	127	25	2	2311	2436	448883313	448883188	1.830000e-12	84.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G164700	chr6A	162554476	162557345	2869	True	1815.733333	5301	98.412667	1	2870	3	chr6A.!!$R1	2869
1	TraesCS6A01G164700	chr6A	162662893	162663691	798	True	711.050000	1349	97.375500	1	840	2	chr6A.!!$R2	839
2	TraesCS6A01G164700	chr6A	162730292	162731093	801	True	710.050000	1347	97.319000	1	840	2	chr6A.!!$R3	839
3	TraesCS6A01G164700	chr7A	681199707	681200894	1187	True	2061.000000	2061	97.980000	880	2067	1	chr7A.!!$R2	1187
4	TraesCS6A01G164700	chr7A	681187659	681188468	809	True	1430.000000	1430	98.520000	2060	2870	1	chr7A.!!$R1	810
5	TraesCS6A01G164700	chr4B	174697333	174699168	1835	False	688.000000	688	73.848000	1030	2865	1	chr4B.!!$F1	1835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
852	860	0.32121	TTCATTGTGATCCACGCCGT	60.321	50.0	0.0	0.0	37.14	5.68	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1879	1888	0.634465	ACAGGGTTTTGGTTCTGGGT	59.366	50.0	0.0	0.0	0.0	4.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
64	65	2.050836	ATGTCAACACGGCCACCTGA	62.051	55.000	2.24	0.00	0.00	3.86
121	122	1.053424	ACATACACACTCGGGTTGGT	58.947	50.000	0.00	0.00	0.00	3.67
423	429	2.441375	TCTCAACATCCTCAAACACCCA	59.559	45.455	0.00	0.00	0.00	4.51
424	430	3.117701	TCTCAACATCCTCAAACACCCAA	60.118	43.478	0.00	0.00	0.00	4.12
425	431	3.221771	TCAACATCCTCAAACACCCAAG	58.778	45.455	0.00	0.00	0.00	3.61
573	581	5.661056	AATAACCGACTGATGTGAGAAGA	57.339	39.130	0.00	0.00	0.00	2.87
812	820	3.038352	CGAACCACGTTCATTGCTATG	57.962	47.619	1.30	1.30	42.05	2.23
813	821	2.223021	CGAACCACGTTCATTGCTATGG	60.223	50.000	8.30	0.00	42.05	2.74
814	822	1.094785	ACCACGTTCATTGCTATGGC	58.905	50.000	8.30	0.00	39.26	4.40
815	823	1.340017	ACCACGTTCATTGCTATGGCT	60.340	47.619	8.30	0.00	39.59	4.75
816	824	1.064505	CCACGTTCATTGCTATGGCTG	59.935	52.381	8.30	0.00	39.59	4.85
817	825	2.009051	CACGTTCATTGCTATGGCTGA	58.991	47.619	8.30	0.00	39.59	4.26
818	826	2.009774	ACGTTCATTGCTATGGCTGAC	58.990	47.619	8.30	2.50	39.59	3.51
819	827	2.283298	CGTTCATTGCTATGGCTGACT	58.717	47.619	8.30	0.00	39.59	3.41
820	828	2.286294	CGTTCATTGCTATGGCTGACTC	59.714	50.000	8.30	0.00	39.59	3.36
821	829	3.539604	GTTCATTGCTATGGCTGACTCT	58.460	45.455	8.30	0.00	39.59	3.24
822	830	3.189618	TCATTGCTATGGCTGACTCTG	57.810	47.619	8.30	0.00	39.59	3.35
823	831	2.158856	TCATTGCTATGGCTGACTCTGG	60.159	50.000	8.30	0.00	39.59	3.86
824	832	1.571955	TTGCTATGGCTGACTCTGGA	58.428	50.000	1.68	0.00	39.59	3.86
825	833	1.798626	TGCTATGGCTGACTCTGGAT	58.201	50.000	1.68	0.00	39.59	3.41
826	834	1.415289	TGCTATGGCTGACTCTGGATG	59.585	52.381	1.68	0.00	39.59	3.51
827	835	1.270732	GCTATGGCTGACTCTGGATGG	60.271	57.143	0.00	0.00	35.22	3.51
828	836	0.761187	TATGGCTGACTCTGGATGGC	59.239	55.000	0.00	0.00	0.00	4.40
829	837	0.987081	ATGGCTGACTCTGGATGGCT	60.987	55.000	0.00	0.00	0.00	4.75
830	838	0.325577	TGGCTGACTCTGGATGGCTA	60.326	55.000	0.00	0.00	0.00	3.93
831	839	1.055040	GGCTGACTCTGGATGGCTAT	58.945	55.000	0.00	0.00	0.00	2.97
832	840	1.001860	GGCTGACTCTGGATGGCTATC	59.998	57.143	0.51	0.51	0.00	2.08
833	841	1.969923	GCTGACTCTGGATGGCTATCT	59.030	52.381	10.15	0.00	33.68	1.98
834	842	2.368221	GCTGACTCTGGATGGCTATCTT	59.632	50.000	10.15	0.00	33.68	2.40
835	843	3.554752	GCTGACTCTGGATGGCTATCTTC	60.555	52.174	10.15	0.00	33.68	2.87
836	844	3.640498	CTGACTCTGGATGGCTATCTTCA	59.360	47.826	10.15	0.00	33.68	3.02
837	845	4.229639	TGACTCTGGATGGCTATCTTCAT	58.770	43.478	10.15	0.00	33.68	2.57
838	846	4.657504	TGACTCTGGATGGCTATCTTCATT	59.342	41.667	10.15	0.00	33.68	2.57
839	847	4.970711	ACTCTGGATGGCTATCTTCATTG	58.029	43.478	10.15	0.02	33.68	2.82
840	848	4.411540	ACTCTGGATGGCTATCTTCATTGT	59.588	41.667	10.15	0.56	33.68	2.71
841	849	4.711399	TCTGGATGGCTATCTTCATTGTG	58.289	43.478	10.15	0.00	33.68	3.33
842	850	4.409901	TCTGGATGGCTATCTTCATTGTGA	59.590	41.667	10.15	0.00	33.68	3.58
843	851	5.072736	TCTGGATGGCTATCTTCATTGTGAT	59.927	40.000	10.15	0.00	33.68	3.06
844	852	5.311265	TGGATGGCTATCTTCATTGTGATC	58.689	41.667	10.15	0.00	33.68	2.92
845	853	4.699257	GGATGGCTATCTTCATTGTGATCC	59.301	45.833	10.15	0.00	33.68	3.36
846	854	4.776435	TGGCTATCTTCATTGTGATCCA	57.224	40.909	0.00	0.00	0.00	3.41
847	855	4.454678	TGGCTATCTTCATTGTGATCCAC	58.545	43.478	0.00	0.00	34.56	4.02
848	856	3.496130	GGCTATCTTCATTGTGATCCACG	59.504	47.826	0.00	0.00	37.14	4.94
849	857	3.059325	GCTATCTTCATTGTGATCCACGC	60.059	47.826	0.00	0.00	37.14	5.34
850	858	1.737838	TCTTCATTGTGATCCACGCC	58.262	50.000	0.00	0.00	37.14	5.68
851	859	0.374758	CTTCATTGTGATCCACGCCG	59.625	55.000	0.00	0.00	37.14	6.46
852	860	0.321210	TTCATTGTGATCCACGCCGT	60.321	50.000	0.00	0.00	37.14	5.68
853	861	0.533032	TCATTGTGATCCACGCCGTA	59.467	50.000	0.00	0.00	37.14	4.02
854	862	0.650512	CATTGTGATCCACGCCGTAC	59.349	55.000	0.00	0.00	37.14	3.67
855	863	0.461339	ATTGTGATCCACGCCGTACC	60.461	55.000	0.00	0.00	37.14	3.34
856	864	1.537814	TTGTGATCCACGCCGTACCT	61.538	55.000	0.00	0.00	37.14	3.08
857	865	1.226888	GTGATCCACGCCGTACCTC	60.227	63.158	0.00	0.00	0.00	3.85
858	866	2.416260	GATCCACGCCGTACCTCC	59.584	66.667	0.00	0.00	0.00	4.30
859	867	3.148031	GATCCACGCCGTACCTCCC	62.148	68.421	0.00	0.00	0.00	4.30
985	993	3.064900	AGGTTTCAATCTCTGGACAGC	57.935	47.619	0.00	0.00	0.00	4.40
1027	1035	1.067582	GAAGGTACAGGATCGCGGG	59.932	63.158	6.13	0.00	0.00	6.13
1049	1058	0.543174	AAGAGGGACAAGGAGAGCGT	60.543	55.000	0.00	0.00	0.00	5.07
1273	1282	7.693969	AGGATCAATGAAAACCTCTTTACAG	57.306	36.000	0.00	0.00	0.00	2.74
1315	1324	3.435846	TGGAACAAGGCAATGCTCA	57.564	47.368	4.82	0.00	31.92	4.26
1545	1554	2.806608	TCGGCGAGTTTGTAAGAGTT	57.193	45.000	4.99	0.00	0.00	3.01
1650	1659	4.989279	ATACGAAAAGCTCCCTACGTTA	57.011	40.909	0.00	0.00	35.66	3.18
1810	1819	2.282958	AGAGAGGACGGGCGACAA	60.283	61.111	0.00	0.00	0.00	3.18
1842	1851	0.324460	GAGGACGAGGAAGGGGAAGA	60.324	60.000	0.00	0.00	0.00	2.87
1868	1877	6.670902	AGCACTTATAACCCTAACCAGAGTTA	59.329	38.462	0.00	0.00	37.42	2.24
1879	1888	3.188159	ACCAGAGTTAGCGTTTCAACA	57.812	42.857	0.00	0.00	0.00	3.33
2038	2047	2.031258	TGTGGAAAACAGCGTGAGAA	57.969	45.000	0.00	0.00	33.78	2.87
2190	2199	2.355756	GCAGAACAAGAGACACAAGCAA	59.644	45.455	0.00	0.00	0.00	3.91
2277	2286	6.423302	CAGTGCCTCAAATATCTCATCTACAC	59.577	42.308	0.00	0.00	0.00	2.90
2392	2401	2.772568	CGAGAGCTTCGTGAGATGAT	57.227	50.000	9.30	0.00	44.27	2.45
2411	2420	1.075659	GAAGCAGTTTGCCCCCTCT	59.924	57.895	0.00	0.00	46.52	3.69
2552	2561	8.797438	TGTATGTACTGGAACAATGCAATAAAA	58.203	29.630	0.00	0.00	38.70	1.52
2588	2597	7.918536	TGGTTACTCGAGGTATCATATAGAC	57.081	40.000	18.41	0.18	0.00	2.59
2707	2719	2.424234	GGGGGATTGCAGGCAATAGTAA	60.424	50.000	18.59	0.00	45.50	2.24
2728	2740	1.541118	TCCCCTGGGCAGTCATTGA	60.541	57.895	7.39	0.00	34.68	2.57
2777	2789	0.396435	AGCACGATGGAGTTGGACAA	59.604	50.000	0.00	0.00	0.00	3.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
121	122	2.584608	GCTAGCGCCTTGGGAGAA	59.415	61.111	2.29	0.00	0.00	2.87
145	146	4.448720	TTCCCATGAGATGAGCATGATT	57.551	40.909	0.00	0.00	44.49	2.57
148	149	5.289595	CAAATTTCCCATGAGATGAGCATG	58.710	41.667	0.00	0.00	42.07	4.06
423	429	0.322648	GTACACGGGCCTGGTAACTT	59.677	55.000	18.00	0.00	37.61	2.66
424	430	1.547472	GGTACACGGGCCTGGTAACT	61.547	60.000	18.00	0.00	37.61	2.24
425	431	1.078918	GGTACACGGGCCTGGTAAC	60.079	63.158	18.00	13.91	0.00	2.50
543	551	6.037062	TCACATCAGTCGGTTATTTGCTATTG	59.963	38.462	0.00	0.00	0.00	1.90
573	581	1.416030	ACTTGAAAGGCGGCCAATTTT	59.584	42.857	23.09	13.14	0.00	1.82
800	808	3.311871	CAGAGTCAGCCATAGCAATGAAC	59.688	47.826	0.00	0.00	43.56	3.18
801	809	3.538591	CAGAGTCAGCCATAGCAATGAA	58.461	45.455	0.00	0.00	43.56	2.57
802	810	2.158856	CCAGAGTCAGCCATAGCAATGA	60.159	50.000	0.00	0.00	43.56	2.57
803	811	2.158856	TCCAGAGTCAGCCATAGCAATG	60.159	50.000	0.00	0.00	43.56	2.82
804	812	2.121948	TCCAGAGTCAGCCATAGCAAT	58.878	47.619	0.00	0.00	43.56	3.56
805	813	1.571955	TCCAGAGTCAGCCATAGCAA	58.428	50.000	0.00	0.00	43.56	3.91
806	814	1.415289	CATCCAGAGTCAGCCATAGCA	59.585	52.381	0.00	0.00	43.56	3.49
807	815	1.270732	CCATCCAGAGTCAGCCATAGC	60.271	57.143	0.00	0.00	40.32	2.97
808	816	1.270732	GCCATCCAGAGTCAGCCATAG	60.271	57.143	0.00	0.00	0.00	2.23
809	817	0.761187	GCCATCCAGAGTCAGCCATA	59.239	55.000	0.00	0.00	0.00	2.74
810	818	0.987081	AGCCATCCAGAGTCAGCCAT	60.987	55.000	0.00	0.00	0.00	4.40
811	819	0.325577	TAGCCATCCAGAGTCAGCCA	60.326	55.000	0.00	0.00	0.00	4.75
812	820	1.001860	GATAGCCATCCAGAGTCAGCC	59.998	57.143	0.00	0.00	0.00	4.85
813	821	1.969923	AGATAGCCATCCAGAGTCAGC	59.030	52.381	0.00	0.00	0.00	4.26
814	822	3.640498	TGAAGATAGCCATCCAGAGTCAG	59.360	47.826	0.00	0.00	0.00	3.51
815	823	3.646534	TGAAGATAGCCATCCAGAGTCA	58.353	45.455	0.00	0.00	0.00	3.41
816	824	4.888326	ATGAAGATAGCCATCCAGAGTC	57.112	45.455	0.00	0.00	0.00	3.36
817	825	4.411540	ACAATGAAGATAGCCATCCAGAGT	59.588	41.667	0.00	0.00	0.00	3.24
818	826	4.755629	CACAATGAAGATAGCCATCCAGAG	59.244	45.833	0.00	0.00	0.00	3.35
819	827	4.409901	TCACAATGAAGATAGCCATCCAGA	59.590	41.667	0.00	0.00	0.00	3.86
820	828	4.711399	TCACAATGAAGATAGCCATCCAG	58.289	43.478	0.00	0.00	0.00	3.86
821	829	4.776435	TCACAATGAAGATAGCCATCCA	57.224	40.909	0.00	0.00	0.00	3.41
822	830	4.699257	GGATCACAATGAAGATAGCCATCC	59.301	45.833	0.00	0.00	0.00	3.51
823	831	5.180868	GTGGATCACAATGAAGATAGCCATC	59.819	44.000	0.00	0.00	34.08	3.51
824	832	5.068636	GTGGATCACAATGAAGATAGCCAT	58.931	41.667	0.00	0.00	34.08	4.40
825	833	4.454678	GTGGATCACAATGAAGATAGCCA	58.545	43.478	0.00	0.00	34.08	4.75
826	834	3.496130	CGTGGATCACAATGAAGATAGCC	59.504	47.826	0.00	0.00	33.40	3.93
827	835	3.059325	GCGTGGATCACAATGAAGATAGC	60.059	47.826	0.00	0.00	33.40	2.97
828	836	3.496130	GGCGTGGATCACAATGAAGATAG	59.504	47.826	0.00	0.00	33.40	2.08
829	837	3.466836	GGCGTGGATCACAATGAAGATA	58.533	45.455	0.00	0.00	33.40	1.98
830	838	2.292267	GGCGTGGATCACAATGAAGAT	58.708	47.619	0.00	0.00	33.40	2.40
831	839	1.737838	GGCGTGGATCACAATGAAGA	58.262	50.000	0.00	0.00	33.40	2.87
832	840	0.374758	CGGCGTGGATCACAATGAAG	59.625	55.000	0.00	0.00	33.40	3.02
833	841	0.321210	ACGGCGTGGATCACAATGAA	60.321	50.000	13.76	0.00	33.40	2.57
834	842	0.533032	TACGGCGTGGATCACAATGA	59.467	50.000	24.86	0.00	33.40	2.57
835	843	0.650512	GTACGGCGTGGATCACAATG	59.349	55.000	24.86	0.00	33.40	2.82
836	844	0.461339	GGTACGGCGTGGATCACAAT	60.461	55.000	24.86	0.00	33.40	2.71
837	845	1.079681	GGTACGGCGTGGATCACAA	60.080	57.895	24.86	0.00	33.40	3.33
838	846	1.940883	GAGGTACGGCGTGGATCACA	61.941	60.000	24.86	0.00	33.40	3.58
839	847	1.226888	GAGGTACGGCGTGGATCAC	60.227	63.158	24.86	12.36	0.00	3.06
840	848	2.420568	GGAGGTACGGCGTGGATCA	61.421	63.158	24.86	0.00	0.00	2.92
841	849	2.416260	GGAGGTACGGCGTGGATC	59.584	66.667	24.86	16.33	0.00	3.36
842	850	3.152400	GGGAGGTACGGCGTGGAT	61.152	66.667	24.86	7.68	0.00	3.41
985	993	1.370437	CCATCGCCTCCAGATCCTG	59.630	63.158	0.00	0.00	0.00	3.86
1027	1035	1.199615	CTCTCCTTGTCCCTCTTCCC	58.800	60.000	0.00	0.00	0.00	3.97
1049	1058	1.626356	CCGGGCCAAGAGATCTTCCA	61.626	60.000	4.39	0.00	33.11	3.53
1158	1167	8.391075	TGAAAGTTTTAAGAGTATGAACCCTG	57.609	34.615	0.00	0.00	0.00	4.45
1273	1282	4.808558	TCTGCTAAACATCCAAATTGTGC	58.191	39.130	0.00	0.00	0.00	4.57
1315	1324	1.078656	TCTAAAAAGCCATGGCCCCTT	59.921	47.619	33.14	23.48	43.17	3.95
1545	1554	3.062369	CGTTGGCGTCAATACCGATTTTA	59.938	43.478	5.40	0.00	35.10	1.52
1552	1561	2.789249	GGCGTTGGCGTCAATACC	59.211	61.111	5.40	7.02	43.09	2.73
1650	1659	1.149101	ACTCCCCACAGTGGAAACAT	58.851	50.000	22.37	0.00	46.14	2.71
1810	1819	3.509290	TCCTCTCGGACCTCCTGT	58.491	61.111	0.00	0.00	33.30	4.00
1842	1851	5.487845	ACTCTGGTTAGGGTTATAAGTGCTT	59.512	40.000	0.00	0.00	32.26	3.91
1868	1877	1.021968	GTTCTGGGTGTTGAAACGCT	58.978	50.000	6.69	0.00	39.31	5.07
1879	1888	0.634465	ACAGGGTTTTGGTTCTGGGT	59.366	50.000	0.00	0.00	0.00	4.51
2038	2047	2.201921	TCTTGTGAGGACGAGCTAGT	57.798	50.000	0.00	0.00	33.94	2.57
2190	2199	1.225373	TAGCTCCATCCCCTTGCATT	58.775	50.000	0.00	0.00	0.00	3.56
2277	2286	3.327754	CCCGCCGATAACGCTTCG	61.328	66.667	0.00	0.00	38.29	3.79
2392	2401	1.228552	GAGGGGGCAAACTGCTTCA	60.229	57.895	0.00	0.00	44.28	3.02
2411	2420	9.448438	ACTTGAGTTTCAACTATGCATATTACA	57.552	29.630	6.92	0.00	39.88	2.41
2552	2561	6.154706	ACCTCGAGTAACCAATAATCTCAACT	59.845	38.462	12.31	0.00	0.00	3.16
2588	2597	5.532557	TCTACCATGTCATCTATCAAAGCG	58.467	41.667	0.00	0.00	0.00	4.68
2707	2719	3.586225	ATGACTGCCCAGGGGAGGT	62.586	63.158	29.72	15.89	45.71	3.85
2728	2740	4.876107	CGTGTAGCACCTCATTAAAATCCT	59.124	41.667	0.00	0.00	0.00	3.24
2777	2789	0.881118	CCATTTGTGCTTGGCTACGT	59.119	50.000	0.00	0.00	0.00	3.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.