Multiple sequence alignment - TraesCS6A01G164400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G164400 chr6A 100.000 3104 0 0 1 3104 162311958 162308855 0.000000e+00 5733.0
1 TraesCS6A01G164400 chr6A 100.000 326 0 0 3456 3781 162308503 162308178 1.500000e-168 603.0
2 TraesCS6A01G164400 chr6A 82.953 569 83 11 1796 2357 521648999 521649560 5.640000e-138 501.0
3 TraesCS6A01G164400 chr6A 88.028 284 27 3 1354 1634 521648651 521648930 2.820000e-86 329.0
4 TraesCS6A01G164400 chr6A 87.815 238 20 6 2522 2750 521649653 521649890 1.730000e-68 270.0
5 TraesCS6A01G164400 chr6B 89.889 2245 129 38 673 2879 213466330 213468514 0.000000e+00 2798.0
6 TraesCS6A01G164400 chr6B 83.743 529 34 18 1 483 213465780 213466302 1.600000e-123 453.0
7 TraesCS6A01G164400 chr6B 86.972 284 30 4 1354 1634 567611408 567611687 2.840000e-81 313.0
8 TraesCS6A01G164400 chr6B 88.983 236 18 6 2522 2750 567612396 567612630 6.180000e-73 285.0
9 TraesCS6A01G164400 chr6B 90.698 86 5 2 2693 2778 234658902 234658984 1.110000e-20 111.0
10 TraesCS6A01G164400 chr6B 92.105 76 5 1 3030 3104 501131256 501131181 5.170000e-19 106.0
11 TraesCS6A01G164400 chr6B 94.030 67 4 0 1402 1468 695474265 695474331 6.680000e-18 102.0
12 TraesCS6A01G164400 chr6B 98.246 57 1 0 3456 3512 620822163 620822107 2.400000e-17 100.0
13 TraesCS6A01G164400 chr6B 98.182 55 1 0 3456 3510 501131094 501131040 3.110000e-16 97.1
14 TraesCS6A01G164400 chr6D 91.437 1343 55 28 1696 3031 121345862 121344573 0.000000e+00 1788.0
15 TraesCS6A01G164400 chr6D 89.013 1438 89 24 1352 2778 136389215 136390594 0.000000e+00 1716.0
16 TraesCS6A01G164400 chr6D 84.375 1024 93 35 679 1639 121346902 121345883 0.000000e+00 942.0
17 TraesCS6A01G164400 chr6D 87.867 511 32 16 1 486 121347438 121346933 1.180000e-159 573.0
18 TraesCS6A01G164400 chr6D 88.380 284 26 4 1354 1634 379339375 379339096 6.050000e-88 335.0
19 TraesCS6A01G164400 chr6D 87.288 236 22 5 2522 2750 379338365 379338131 2.900000e-66 263.0
20 TraesCS6A01G164400 chr6D 86.316 95 10 3 3512 3605 121344582 121344490 2.400000e-17 100.0
21 TraesCS6A01G164400 chr7A 77.917 240 41 8 1370 1603 173638868 173638635 5.090000e-29 139.0
22 TraesCS6A01G164400 chr7B 77.500 240 42 8 1370 1603 137027066 137026833 2.370000e-27 134.0
23 TraesCS6A01G164400 chr7B 98.246 57 1 0 3456 3512 22511887 22511831 2.400000e-17 100.0
24 TraesCS6A01G164400 chr7B 89.855 69 5 2 3456 3523 406759512 406759445 1.870000e-13 87.9
25 TraesCS6A01G164400 chr2B 93.243 74 4 1 3032 3104 40495734 40495807 1.440000e-19 108.0
26 TraesCS6A01G164400 chr2B 93.651 63 3 1 3456 3518 291370916 291370855 4.020000e-15 93.5
27 TraesCS6A01G164400 chrUn 98.246 57 1 0 3456 3512 37383976 37384032 2.400000e-17 100.0
28 TraesCS6A01G164400 chr5B 98.246 57 1 0 3456 3512 227016068 227016124 2.400000e-17 100.0
29 TraesCS6A01G164400 chr4B 98.246 57 1 0 3456 3512 100933475 100933419 2.400000e-17 100.0
30 TraesCS6A01G164400 chr4B 90.667 75 6 1 3031 3104 100933640 100933566 8.640000e-17 99.0
31 TraesCS6A01G164400 chr3B 98.246 57 1 0 3456 3512 483922230 483922174 2.400000e-17 100.0
32 TraesCS6A01G164400 chr1A 90.667 75 6 1 3031 3104 344117808 344117882 8.640000e-17 99.0
33 TraesCS6A01G164400 chr7D 74.884 215 43 10 2536 2748 170729904 170729699 1.870000e-13 87.9
34 TraesCS6A01G164400 chr3D 85.455 55 5 1 1441 1495 136564786 136564735 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G164400 chr6A 162308178 162311958 3780 True 3168.000000 5733 100.000000 1 3781 2 chr6A.!!$R1 3780
1 TraesCS6A01G164400 chr6A 521648651 521649890 1239 False 366.666667 501 86.265333 1354 2750 3 chr6A.!!$F1 1396
2 TraesCS6A01G164400 chr6B 213465780 213468514 2734 False 1625.500000 2798 86.816000 1 2879 2 chr6B.!!$F3 2878
3 TraesCS6A01G164400 chr6B 567611408 567612630 1222 False 299.000000 313 87.977500 1354 2750 2 chr6B.!!$F4 1396
4 TraesCS6A01G164400 chr6D 136389215 136390594 1379 False 1716.000000 1716 89.013000 1352 2778 1 chr6D.!!$F1 1426
5 TraesCS6A01G164400 chr6D 121344490 121347438 2948 True 850.750000 1788 87.498750 1 3605 4 chr6D.!!$R1 3604
6 TraesCS6A01G164400 chr6D 379338131 379339375 1244 True 299.000000 335 87.834000 1354 2750 2 chr6D.!!$R2 1396

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
524 580 0.099968 CTTGCATGCTCCCATTCGTG 59.900 55.0 20.33 0.00 0.00 4.35 F
589 645 0.108207 TTCGTTCCCACCCGCTTAAA 59.892 50.0 0.00 0.00 0.00 1.52 F
590 646 0.108207 TCGTTCCCACCCGCTTAAAA 59.892 50.0 0.00 0.00 0.00 1.52 F
2446 2665 0.249031 AGAAAGTTGGCTGCAAACGC 60.249 50.0 13.89 8.05 32.65 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2374 2593 0.032952 GTATGGGGCTGCATGCATTG 59.967 55.000 22.97 12.0 45.15 2.82 R
2420 2639 1.202452 GCAGCCAACTTTCTTGTTGCT 60.202 47.619 0.00 0.0 44.12 3.91 R
2586 2814 1.296392 CCTCCGTGATGTCCAGCAA 59.704 57.895 0.00 0.0 0.00 3.91 R
3751 3985 0.039437 CCGGCTACTACGTGGCTATG 60.039 60.000 0.00 0.0 39.93 2.23 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.950475 CCCCCTTCCTCTTAATTTCTCAAC 59.050 45.833 0.00 0.00 0.00 3.18
51 52 1.358787 TGGGAATGGGAGAAATGCAGT 59.641 47.619 0.00 0.00 0.00 4.40
56 57 2.380064 TGGGAGAAATGCAGTTGGTT 57.620 45.000 3.09 0.00 0.00 3.67
100 106 3.321497 CTTCCTCTTTTCTCTGTCACGG 58.679 50.000 0.00 0.00 0.00 4.94
118 124 3.564225 CACGGCTGTTTTTACTCCTTTCT 59.436 43.478 0.00 0.00 0.00 2.52
119 125 3.564225 ACGGCTGTTTTTACTCCTTTCTG 59.436 43.478 0.00 0.00 0.00 3.02
141 147 2.119457 CCTTGAAAAGTCAAAGCACGC 58.881 47.619 0.00 0.00 44.25 5.34
143 149 2.187351 TGAAAAGTCAAAGCACGCAC 57.813 45.000 0.00 0.00 0.00 5.34
162 168 0.811616 CCCTCGGAAGAATCAAGGCG 60.812 60.000 0.00 0.00 41.32 5.52
189 195 2.550180 GTGGTTGAAAAGTCAGAGCTCC 59.450 50.000 10.93 0.00 34.49 4.70
201 207 3.009143 GTCAGAGCTCCTTTTCCCCTTTA 59.991 47.826 10.93 0.00 0.00 1.85
202 208 3.852578 TCAGAGCTCCTTTTCCCCTTTAT 59.147 43.478 10.93 0.00 0.00 1.40
203 209 5.036916 TCAGAGCTCCTTTTCCCCTTTATA 58.963 41.667 10.93 0.00 0.00 0.98
215 221 4.787551 TCCCCTTTATACATGAACGCAAT 58.212 39.130 0.00 0.00 0.00 3.56
255 274 3.309954 GGTCGAGTGCACCTTTATCATTC 59.690 47.826 14.63 0.00 0.00 2.67
334 358 0.729116 TCCGTGGTAGATCGAACGTC 59.271 55.000 4.57 0.00 34.30 4.34
339 363 1.332686 TGGTAGATCGAACGTCGGATG 59.667 52.381 6.08 0.00 40.88 3.51
385 409 5.007682 TCCTAACCATAACCAAGCAGAAAC 58.992 41.667 0.00 0.00 0.00 2.78
388 412 2.158385 ACCATAACCAAGCAGAAACCCA 60.158 45.455 0.00 0.00 0.00 4.51
389 413 2.231235 CCATAACCAAGCAGAAACCCAC 59.769 50.000 0.00 0.00 0.00 4.61
390 414 1.600023 TAACCAAGCAGAAACCCACG 58.400 50.000 0.00 0.00 0.00 4.94
392 416 1.228124 CCAAGCAGAAACCCACGGA 60.228 57.895 0.00 0.00 0.00 4.69
420 470 1.063174 GCAAATCATCAGCTGACGTCC 59.937 52.381 20.97 0.00 36.48 4.79
483 539 5.818136 TGAAATGCTAGCAATACCAAGTC 57.182 39.130 23.54 7.22 0.00 3.01
486 542 2.632377 TGCTAGCAATACCAAGTCTGC 58.368 47.619 16.84 0.00 34.96 4.26
487 543 2.237143 TGCTAGCAATACCAAGTCTGCT 59.763 45.455 16.84 8.69 46.50 4.24
488 544 3.274288 GCTAGCAATACCAAGTCTGCTT 58.726 45.455 10.63 0.00 42.37 3.91
489 545 4.081142 TGCTAGCAATACCAAGTCTGCTTA 60.081 41.667 16.84 0.00 42.37 3.09
491 547 3.262420 AGCAATACCAAGTCTGCTTACG 58.738 45.455 0.00 0.00 42.37 3.18
492 548 3.056107 AGCAATACCAAGTCTGCTTACGA 60.056 43.478 0.00 0.00 42.37 3.43
494 550 4.025647 GCAATACCAAGTCTGCTTACGATC 60.026 45.833 0.00 0.00 32.87 3.69
495 551 2.674796 ACCAAGTCTGCTTACGATCC 57.325 50.000 0.00 0.00 32.87 3.36
497 553 3.362706 ACCAAGTCTGCTTACGATCCTA 58.637 45.455 0.00 0.00 32.87 2.94
498 554 3.381908 ACCAAGTCTGCTTACGATCCTAG 59.618 47.826 0.00 0.00 32.87 3.02
499 555 3.632604 CCAAGTCTGCTTACGATCCTAGA 59.367 47.826 0.00 0.00 32.87 2.43
500 556 4.498345 CCAAGTCTGCTTACGATCCTAGAC 60.498 50.000 0.00 0.00 35.88 2.59
501 557 2.873472 AGTCTGCTTACGATCCTAGACG 59.127 50.000 0.00 0.00 39.47 4.18
502 558 2.871022 GTCTGCTTACGATCCTAGACGA 59.129 50.000 9.96 0.00 0.00 4.20
503 559 3.059461 GTCTGCTTACGATCCTAGACGAG 60.059 52.174 9.96 1.51 0.00 4.18
504 560 3.132160 CTGCTTACGATCCTAGACGAGA 58.868 50.000 9.96 0.00 0.00 4.04
505 561 2.871022 TGCTTACGATCCTAGACGAGAC 59.129 50.000 9.96 0.00 0.00 3.36
506 562 3.132925 GCTTACGATCCTAGACGAGACT 58.867 50.000 9.96 0.00 0.00 3.24
507 563 3.560896 GCTTACGATCCTAGACGAGACTT 59.439 47.826 9.96 0.00 0.00 3.01
508 564 4.553156 GCTTACGATCCTAGACGAGACTTG 60.553 50.000 9.96 0.00 0.00 3.16
509 565 1.671845 ACGATCCTAGACGAGACTTGC 59.328 52.381 9.96 0.00 0.00 4.01
510 566 1.671328 CGATCCTAGACGAGACTTGCA 59.329 52.381 0.00 0.00 0.00 4.08
511 567 2.292016 CGATCCTAGACGAGACTTGCAT 59.708 50.000 0.00 0.00 0.00 3.96
512 568 3.637432 GATCCTAGACGAGACTTGCATG 58.363 50.000 0.00 0.00 0.00 4.06
513 569 1.135139 TCCTAGACGAGACTTGCATGC 59.865 52.381 11.82 11.82 0.00 4.06
514 570 1.135915 CCTAGACGAGACTTGCATGCT 59.864 52.381 20.33 0.00 0.00 3.79
515 571 2.458951 CTAGACGAGACTTGCATGCTC 58.541 52.381 20.33 8.36 0.00 4.26
516 572 0.108424 AGACGAGACTTGCATGCTCC 60.108 55.000 20.33 5.23 0.00 4.70
517 573 1.078848 ACGAGACTTGCATGCTCCC 60.079 57.895 20.33 5.58 0.00 4.30
518 574 1.078918 CGAGACTTGCATGCTCCCA 60.079 57.895 20.33 0.00 0.00 4.37
519 575 0.463295 CGAGACTTGCATGCTCCCAT 60.463 55.000 20.33 1.85 0.00 4.00
520 576 1.760192 GAGACTTGCATGCTCCCATT 58.240 50.000 20.33 0.00 0.00 3.16
521 577 1.674962 GAGACTTGCATGCTCCCATTC 59.325 52.381 20.33 6.71 0.00 2.67
522 578 0.379669 GACTTGCATGCTCCCATTCG 59.620 55.000 20.33 0.88 0.00 3.34
523 579 0.322816 ACTTGCATGCTCCCATTCGT 60.323 50.000 20.33 1.49 0.00 3.85
524 580 0.099968 CTTGCATGCTCCCATTCGTG 59.900 55.000 20.33 0.00 0.00 4.35
525 581 1.936436 TTGCATGCTCCCATTCGTGC 61.936 55.000 20.33 0.00 43.48 5.34
526 582 2.117156 GCATGCTCCCATTCGTGCT 61.117 57.895 11.37 0.00 40.87 4.40
527 583 2.020131 CATGCTCCCATTCGTGCTC 58.980 57.895 0.00 0.00 0.00 4.26
528 584 1.153086 ATGCTCCCATTCGTGCTCC 60.153 57.895 0.00 0.00 0.00 4.70
529 585 1.630126 ATGCTCCCATTCGTGCTCCT 61.630 55.000 0.00 0.00 0.00 3.69
530 586 0.975556 TGCTCCCATTCGTGCTCCTA 60.976 55.000 0.00 0.00 0.00 2.94
531 587 0.530870 GCTCCCATTCGTGCTCCTAC 60.531 60.000 0.00 0.00 0.00 3.18
532 588 0.824109 CTCCCATTCGTGCTCCTACA 59.176 55.000 0.00 0.00 0.00 2.74
533 589 1.414181 CTCCCATTCGTGCTCCTACAT 59.586 52.381 0.00 0.00 0.00 2.29
534 590 2.628178 CTCCCATTCGTGCTCCTACATA 59.372 50.000 0.00 0.00 0.00 2.29
535 591 2.364324 TCCCATTCGTGCTCCTACATAC 59.636 50.000 0.00 0.00 0.00 2.39
536 592 2.365617 CCCATTCGTGCTCCTACATACT 59.634 50.000 0.00 0.00 0.00 2.12
537 593 3.181465 CCCATTCGTGCTCCTACATACTT 60.181 47.826 0.00 0.00 0.00 2.24
538 594 3.804325 CCATTCGTGCTCCTACATACTTG 59.196 47.826 0.00 0.00 0.00 3.16
539 595 4.441495 CCATTCGTGCTCCTACATACTTGA 60.441 45.833 0.00 0.00 0.00 3.02
540 596 3.777465 TCGTGCTCCTACATACTTGAC 57.223 47.619 0.00 0.00 0.00 3.18
541 597 3.353557 TCGTGCTCCTACATACTTGACT 58.646 45.455 0.00 0.00 0.00 3.41
542 598 3.762288 TCGTGCTCCTACATACTTGACTT 59.238 43.478 0.00 0.00 0.00 3.01
543 599 3.859961 CGTGCTCCTACATACTTGACTTG 59.140 47.826 0.00 0.00 0.00 3.16
544 600 4.380550 CGTGCTCCTACATACTTGACTTGA 60.381 45.833 0.00 0.00 0.00 3.02
545 601 5.665459 GTGCTCCTACATACTTGACTTGAT 58.335 41.667 0.00 0.00 0.00 2.57
546 602 6.109359 GTGCTCCTACATACTTGACTTGATT 58.891 40.000 0.00 0.00 0.00 2.57
547 603 6.595716 GTGCTCCTACATACTTGACTTGATTT 59.404 38.462 0.00 0.00 0.00 2.17
548 604 6.595326 TGCTCCTACATACTTGACTTGATTTG 59.405 38.462 0.00 0.00 0.00 2.32
549 605 6.818644 GCTCCTACATACTTGACTTGATTTGA 59.181 38.462 0.00 0.00 0.00 2.69
550 606 7.497249 GCTCCTACATACTTGACTTGATTTGAT 59.503 37.037 0.00 0.00 0.00 2.57
551 607 9.388506 CTCCTACATACTTGACTTGATTTGATT 57.611 33.333 0.00 0.00 0.00 2.57
552 608 9.166173 TCCTACATACTTGACTTGATTTGATTG 57.834 33.333 0.00 0.00 0.00 2.67
553 609 8.950210 CCTACATACTTGACTTGATTTGATTGT 58.050 33.333 0.00 0.00 0.00 2.71
560 616 9.301153 ACTTGACTTGATTTGATTGTAACAAAC 57.699 29.630 0.00 0.00 39.48 2.93
561 617 9.299963 CTTGACTTGATTTGATTGTAACAAACA 57.700 29.630 0.00 0.00 39.48 2.83
575 631 8.983307 TTGTAACAAACAAAATAAGGTTCGTT 57.017 26.923 0.00 0.00 45.11 3.85
576 632 8.617761 TGTAACAAACAAAATAAGGTTCGTTC 57.382 30.769 0.00 0.00 34.29 3.95
577 633 7.701501 TGTAACAAACAAAATAAGGTTCGTTCC 59.298 33.333 0.00 0.00 34.29 3.62
578 634 5.593968 ACAAACAAAATAAGGTTCGTTCCC 58.406 37.500 0.00 0.00 0.00 3.97
579 635 5.127356 ACAAACAAAATAAGGTTCGTTCCCA 59.873 36.000 0.00 0.00 0.00 4.37
580 636 4.841443 ACAAAATAAGGTTCGTTCCCAC 57.159 40.909 0.00 0.00 0.00 4.61
581 637 3.570975 ACAAAATAAGGTTCGTTCCCACC 59.429 43.478 0.00 0.00 0.00 4.61
582 638 2.502142 AATAAGGTTCGTTCCCACCC 57.498 50.000 0.00 0.00 32.92 4.61
583 639 0.251073 ATAAGGTTCGTTCCCACCCG 59.749 55.000 0.00 0.00 32.92 5.28
584 640 2.453379 TAAGGTTCGTTCCCACCCGC 62.453 60.000 0.00 0.00 32.92 6.13
585 641 4.324991 GGTTCGTTCCCACCCGCT 62.325 66.667 0.00 0.00 0.00 5.52
586 642 2.281276 GTTCGTTCCCACCCGCTT 60.281 61.111 0.00 0.00 0.00 4.68
587 643 1.004679 GTTCGTTCCCACCCGCTTA 60.005 57.895 0.00 0.00 0.00 3.09
588 644 0.603439 GTTCGTTCCCACCCGCTTAA 60.603 55.000 0.00 0.00 0.00 1.85
589 645 0.108207 TTCGTTCCCACCCGCTTAAA 59.892 50.000 0.00 0.00 0.00 1.52
590 646 0.108207 TCGTTCCCACCCGCTTAAAA 59.892 50.000 0.00 0.00 0.00 1.52
591 647 1.170442 CGTTCCCACCCGCTTAAAAT 58.830 50.000 0.00 0.00 0.00 1.82
592 648 1.131693 CGTTCCCACCCGCTTAAAATC 59.868 52.381 0.00 0.00 0.00 2.17
593 649 2.164338 GTTCCCACCCGCTTAAAATCA 58.836 47.619 0.00 0.00 0.00 2.57
594 650 2.122783 TCCCACCCGCTTAAAATCAG 57.877 50.000 0.00 0.00 0.00 2.90
595 651 0.455815 CCCACCCGCTTAAAATCAGC 59.544 55.000 0.00 0.00 0.00 4.26
603 659 2.906354 GCTTAAAATCAGCGGGAGAGA 58.094 47.619 0.00 0.00 0.00 3.10
604 660 3.471680 GCTTAAAATCAGCGGGAGAGAT 58.528 45.455 0.00 0.00 0.00 2.75
605 661 3.249559 GCTTAAAATCAGCGGGAGAGATG 59.750 47.826 0.00 0.00 0.00 2.90
606 662 4.697514 CTTAAAATCAGCGGGAGAGATGA 58.302 43.478 0.00 0.00 0.00 2.92
607 663 3.853355 AAAATCAGCGGGAGAGATGAT 57.147 42.857 0.00 0.00 33.91 2.45
608 664 3.853355 AAATCAGCGGGAGAGATGATT 57.147 42.857 4.85 4.85 42.61 2.57
609 665 4.963318 AAATCAGCGGGAGAGATGATTA 57.037 40.909 10.25 0.00 40.54 1.75
610 666 3.951775 ATCAGCGGGAGAGATGATTAC 57.048 47.619 0.00 0.00 0.00 1.89
611 667 2.666317 TCAGCGGGAGAGATGATTACA 58.334 47.619 0.00 0.00 0.00 2.41
612 668 3.234353 TCAGCGGGAGAGATGATTACAT 58.766 45.455 0.00 0.00 39.67 2.29
613 669 3.643320 TCAGCGGGAGAGATGATTACATT 59.357 43.478 0.00 0.00 36.82 2.71
614 670 4.832823 TCAGCGGGAGAGATGATTACATTA 59.167 41.667 0.00 0.00 36.82 1.90
615 671 5.481824 TCAGCGGGAGAGATGATTACATTAT 59.518 40.000 0.00 0.00 36.82 1.28
616 672 6.663523 TCAGCGGGAGAGATGATTACATTATA 59.336 38.462 0.00 0.00 36.82 0.98
617 673 7.178451 TCAGCGGGAGAGATGATTACATTATAA 59.822 37.037 0.00 0.00 36.82 0.98
618 674 7.819415 CAGCGGGAGAGATGATTACATTATAAA 59.181 37.037 0.00 0.00 36.82 1.40
619 675 8.037758 AGCGGGAGAGATGATTACATTATAAAG 58.962 37.037 0.00 0.00 36.82 1.85
620 676 8.035394 GCGGGAGAGATGATTACATTATAAAGA 58.965 37.037 0.00 0.00 36.82 2.52
621 677 9.929180 CGGGAGAGATGATTACATTATAAAGAA 57.071 33.333 0.00 0.00 36.82 2.52
648 704 2.452600 AAAAAGACAGGTGGGAGCAA 57.547 45.000 0.00 0.00 0.00 3.91
649 705 1.986882 AAAAGACAGGTGGGAGCAAG 58.013 50.000 0.00 0.00 0.00 4.01
650 706 0.538287 AAAGACAGGTGGGAGCAAGC 60.538 55.000 0.00 0.00 0.00 4.01
651 707 2.360475 GACAGGTGGGAGCAAGCC 60.360 66.667 0.00 0.00 0.00 4.35
652 708 4.335647 ACAGGTGGGAGCAAGCCG 62.336 66.667 0.00 0.00 0.00 5.52
655 711 4.115199 GGTGGGAGCAAGCCGGAT 62.115 66.667 5.05 0.00 0.00 4.18
656 712 2.514824 GTGGGAGCAAGCCGGATC 60.515 66.667 5.05 0.00 0.00 3.36
672 728 1.823797 GATCCGGCGATCCTACTAGT 58.176 55.000 9.30 0.00 39.29 2.57
673 729 2.983229 GATCCGGCGATCCTACTAGTA 58.017 52.381 9.30 1.89 39.29 1.82
674 730 2.469274 TCCGGCGATCCTACTAGTAG 57.531 55.000 21.11 21.11 0.00 2.57
675 731 1.696336 TCCGGCGATCCTACTAGTAGT 59.304 52.381 24.84 8.14 0.00 2.73
676 732 2.075338 CCGGCGATCCTACTAGTAGTC 58.925 57.143 24.84 16.85 0.00 2.59
677 733 2.289569 CCGGCGATCCTACTAGTAGTCT 60.290 54.545 24.84 13.64 0.00 3.24
688 744 6.658391 TCCTACTAGTAGTCTGTTTCAGAACC 59.342 42.308 24.84 0.00 42.46 3.62
706 762 1.210931 CTGCAGATTTGTGTGGCCG 59.789 57.895 8.42 0.00 0.00 6.13
720 776 0.960364 TGGCCGCCTGAATTTGACTC 60.960 55.000 11.61 0.00 0.00 3.36
724 780 0.371645 CGCCTGAATTTGACTCGCTC 59.628 55.000 0.00 0.00 0.00 5.03
855 912 2.121786 CAAATGCATGCAATCTACCGC 58.878 47.619 26.68 0.00 0.00 5.68
914 981 3.479269 CGCCGCCAAGAGAACGAC 61.479 66.667 0.00 0.00 0.00 4.34
947 1032 2.809601 CGCTGCGTACGCCTTCTT 60.810 61.111 35.11 0.00 41.09 2.52
949 1034 1.446272 GCTGCGTACGCCTTCTTCT 60.446 57.895 35.11 0.00 41.09 2.85
950 1035 1.014564 GCTGCGTACGCCTTCTTCTT 61.015 55.000 35.11 0.00 41.09 2.52
951 1036 0.992802 CTGCGTACGCCTTCTTCTTC 59.007 55.000 35.11 6.52 41.09 2.87
952 1037 0.601558 TGCGTACGCCTTCTTCTTCT 59.398 50.000 35.11 0.00 41.09 2.85
953 1038 1.000506 TGCGTACGCCTTCTTCTTCTT 59.999 47.619 35.11 0.00 41.09 2.52
954 1039 1.654602 GCGTACGCCTTCTTCTTCTTC 59.345 52.381 29.51 0.00 34.56 2.87
955 1040 2.671632 GCGTACGCCTTCTTCTTCTTCT 60.672 50.000 29.51 0.00 34.56 2.85
956 1041 3.576648 CGTACGCCTTCTTCTTCTTCTT 58.423 45.455 0.52 0.00 0.00 2.52
957 1042 3.608939 CGTACGCCTTCTTCTTCTTCTTC 59.391 47.826 0.52 0.00 0.00 2.87
958 1043 4.616373 CGTACGCCTTCTTCTTCTTCTTCT 60.616 45.833 0.52 0.00 0.00 2.85
959 1044 4.344359 ACGCCTTCTTCTTCTTCTTCTT 57.656 40.909 0.00 0.00 0.00 2.52
960 1045 4.311606 ACGCCTTCTTCTTCTTCTTCTTC 58.688 43.478 0.00 0.00 0.00 2.87
961 1046 4.039852 ACGCCTTCTTCTTCTTCTTCTTCT 59.960 41.667 0.00 0.00 0.00 2.85
962 1047 4.994217 CGCCTTCTTCTTCTTCTTCTTCTT 59.006 41.667 0.00 0.00 0.00 2.52
963 1048 5.120053 CGCCTTCTTCTTCTTCTTCTTCTTC 59.880 44.000 0.00 0.00 0.00 2.87
964 1049 6.230472 GCCTTCTTCTTCTTCTTCTTCTTCT 58.770 40.000 0.00 0.00 0.00 2.85
965 1050 6.710295 GCCTTCTTCTTCTTCTTCTTCTTCTT 59.290 38.462 0.00 0.00 0.00 2.52
966 1051 7.095229 GCCTTCTTCTTCTTCTTCTTCTTCTTC 60.095 40.741 0.00 0.00 0.00 2.87
1005 1090 3.006859 TCTTCTTCTTCTTCCACATGCGA 59.993 43.478 0.00 0.00 0.00 5.10
1033 1155 1.067495 CGTCACCTTCCTCAACTCCTC 60.067 57.143 0.00 0.00 0.00 3.71
1184 1306 1.333791 CGACTTCAACTTGGCCGAAAC 60.334 52.381 0.00 0.00 0.00 2.78
1191 1316 1.601166 ACTTGGCCGAAACTTACCAC 58.399 50.000 0.00 0.00 0.00 4.16
1192 1317 1.134037 ACTTGGCCGAAACTTACCACA 60.134 47.619 0.00 0.00 0.00 4.17
1224 1349 1.493861 CCTCCTCTTCATCCTCTGCA 58.506 55.000 0.00 0.00 0.00 4.41
1227 1352 2.967201 CTCCTCTTCATCCTCTGCATCT 59.033 50.000 0.00 0.00 0.00 2.90
1230 1355 2.967201 CTCTTCATCCTCTGCATCTCCT 59.033 50.000 0.00 0.00 0.00 3.69
1231 1356 2.699321 TCTTCATCCTCTGCATCTCCTG 59.301 50.000 0.00 0.00 0.00 3.86
1232 1357 1.421480 TCATCCTCTGCATCTCCTGG 58.579 55.000 0.00 0.00 0.00 4.45
1254 1382 4.436998 GCCACCACCTCCTCGTCG 62.437 72.222 0.00 0.00 0.00 5.12
1278 1418 2.198287 GGCTCCGGCTACCGTATCA 61.198 63.158 0.00 0.00 46.80 2.15
1284 1424 0.589708 CGGCTACCGTATCATCGTCA 59.410 55.000 0.00 0.00 42.73 4.35
1285 1425 1.002142 CGGCTACCGTATCATCGTCAA 60.002 52.381 0.00 0.00 42.73 3.18
1287 1427 2.034305 GGCTACCGTATCATCGTCAACT 59.966 50.000 0.00 0.00 0.00 3.16
1290 1430 2.793933 ACCGTATCATCGTCAACTTCG 58.206 47.619 0.00 0.00 0.00 3.79
1311 1451 2.182030 GCCAACTCCTCCTCGTCG 59.818 66.667 0.00 0.00 0.00 5.12
1314 1454 1.241990 CCAACTCCTCCTCGTCGTCA 61.242 60.000 0.00 0.00 0.00 4.35
1315 1455 0.811915 CAACTCCTCCTCGTCGTCAT 59.188 55.000 0.00 0.00 0.00 3.06
1320 1460 1.090625 CCTCCTCGTCGTCATCGTCT 61.091 60.000 0.00 0.00 38.33 4.18
1321 1461 1.568606 CTCCTCGTCGTCATCGTCTA 58.431 55.000 0.00 0.00 38.33 2.59
1322 1462 1.258458 CTCCTCGTCGTCATCGTCTAC 59.742 57.143 0.00 0.00 38.33 2.59
1327 1479 0.314898 GTCGTCATCGTCTACGTCGG 60.315 60.000 0.00 0.00 39.99 4.79
1530 1694 3.155167 GACCTCCCCCGCTTCGAT 61.155 66.667 0.00 0.00 0.00 3.59
1569 1733 0.466922 CCATGAGGGGCAAGTCCATC 60.467 60.000 0.00 0.00 38.04 3.51
1611 1775 1.476833 GCCAGGAACCACTTCAAGTCA 60.477 52.381 0.00 0.00 0.00 3.41
1656 1829 1.153842 TGCGTACACGGCAGATCTG 60.154 57.895 18.84 18.84 40.23 2.90
1668 1841 2.756840 CAGATCTGCTCAGTTGGACA 57.243 50.000 10.38 0.00 0.00 4.02
1682 1869 1.786937 TGGACAAACAACCCATTGCT 58.213 45.000 0.00 0.00 39.66 3.91
1758 1949 1.139095 GCCGGTCGTCCACTTCTAG 59.861 63.158 1.90 0.00 0.00 2.43
1916 2109 2.989253 TCGCTCTTCTGGTCGCCA 60.989 61.111 0.00 0.00 0.00 5.69
1928 2121 0.608035 GGTCGCCATTCCTGGTCAAA 60.608 55.000 0.00 0.00 45.10 2.69
1942 2135 1.528129 GTCAAAGCCAACCTCTCCAG 58.472 55.000 0.00 0.00 0.00 3.86
2367 2586 2.742372 CGCAGGTGGGAAACGGAG 60.742 66.667 0.00 0.00 0.00 4.63
2371 2590 1.460689 AGGTGGGAAACGGAGACCA 60.461 57.895 0.00 0.00 0.00 4.02
2372 2591 0.840722 AGGTGGGAAACGGAGACCAT 60.841 55.000 0.00 0.00 35.13 3.55
2374 2593 1.002624 TGGGAAACGGAGACCATGC 60.003 57.895 0.00 0.00 0.00 4.06
2375 2594 1.002624 GGGAAACGGAGACCATGCA 60.003 57.895 0.00 0.00 0.00 3.96
2420 2639 0.805614 CCTCTCTCTTTCTCGACGCA 59.194 55.000 0.00 0.00 0.00 5.24
2432 2651 0.581529 TCGACGCAGCAACAAGAAAG 59.418 50.000 0.00 0.00 0.00 2.62
2437 2656 1.211743 GCAGCAACAAGAAAGTTGGC 58.788 50.000 8.66 1.56 46.81 4.52
2444 2663 2.892374 ACAAGAAAGTTGGCTGCAAAC 58.108 42.857 11.99 11.99 0.00 2.93
2445 2664 1.854126 CAAGAAAGTTGGCTGCAAACG 59.146 47.619 13.89 0.00 32.65 3.60
2446 2665 0.249031 AGAAAGTTGGCTGCAAACGC 60.249 50.000 13.89 8.05 32.65 4.84
2447 2666 1.539776 GAAAGTTGGCTGCAAACGCG 61.540 55.000 13.89 3.53 32.65 6.01
2765 2993 4.100084 CTGGCGGCTCATCCACCA 62.100 66.667 11.43 0.00 44.55 4.17
2767 2995 4.408821 GGCGGCTCATCCACCACA 62.409 66.667 0.00 0.00 37.01 4.17
2768 2996 2.821366 GCGGCTCATCCACCACAG 60.821 66.667 0.00 0.00 34.01 3.66
2769 2997 2.821366 CGGCTCATCCACCACAGC 60.821 66.667 0.00 0.00 34.01 4.40
2770 2998 2.821366 GGCTCATCCACCACAGCG 60.821 66.667 0.00 0.00 32.26 5.18
2771 2999 2.046892 GCTCATCCACCACAGCGT 60.047 61.111 0.00 0.00 0.00 5.07
2772 3000 2.393768 GCTCATCCACCACAGCGTG 61.394 63.158 2.27 2.27 0.00 5.34
2773 3001 2.358615 TCATCCACCACAGCGTGC 60.359 61.111 3.56 0.00 32.10 5.34
2774 3002 2.359107 CATCCACCACAGCGTGCT 60.359 61.111 3.56 0.00 32.10 4.40
2776 3004 2.882677 ATCCACCACAGCGTGCTGA 61.883 57.895 27.26 5.01 46.30 4.26
2795 3023 4.798924 GCTGACTGACATTGAGTGAGTTCT 60.799 45.833 0.00 0.00 45.08 3.01
2796 3024 5.282055 TGACTGACATTGAGTGAGTTCTT 57.718 39.130 0.00 0.00 45.08 2.52
2797 3025 5.292765 TGACTGACATTGAGTGAGTTCTTC 58.707 41.667 0.00 0.00 45.08 2.87
2801 3029 4.202295 TGACATTGAGTGAGTTCTTCTGCT 60.202 41.667 0.00 0.00 0.00 4.24
2838 3067 6.623767 GCCAGACTTGTGTAAATTGATCTTCC 60.624 42.308 0.00 0.00 0.00 3.46
2857 3091 4.527509 TCCTTTTTGCCGCATTAATTCA 57.472 36.364 0.00 0.00 0.00 2.57
2869 3103 5.026462 CGCATTAATTCAGAGCAAAGTGAG 58.974 41.667 0.00 0.00 0.00 3.51
2882 3116 4.134623 GTGAGTTCACGGTTGCCA 57.865 55.556 0.00 0.00 37.10 4.92
2883 3117 2.399856 GTGAGTTCACGGTTGCCAA 58.600 52.632 0.00 0.00 37.10 4.52
2884 3118 0.951558 GTGAGTTCACGGTTGCCAAT 59.048 50.000 0.00 0.00 37.10 3.16
2885 3119 1.069227 GTGAGTTCACGGTTGCCAATC 60.069 52.381 0.00 0.00 37.10 2.67
2886 3120 1.234821 GAGTTCACGGTTGCCAATCA 58.765 50.000 0.00 0.00 0.00 2.57
2887 3121 1.812571 GAGTTCACGGTTGCCAATCAT 59.187 47.619 0.00 0.00 0.00 2.45
2888 3122 3.006940 GAGTTCACGGTTGCCAATCATA 58.993 45.455 0.00 0.00 0.00 2.15
2889 3123 3.620488 AGTTCACGGTTGCCAATCATAT 58.380 40.909 0.00 0.00 0.00 1.78
2890 3124 4.016444 AGTTCACGGTTGCCAATCATATT 58.984 39.130 0.00 0.00 0.00 1.28
2891 3125 4.096382 AGTTCACGGTTGCCAATCATATTC 59.904 41.667 0.00 0.00 0.00 1.75
2892 3126 3.615155 TCACGGTTGCCAATCATATTCA 58.385 40.909 0.00 0.00 0.00 2.57
2893 3127 4.206375 TCACGGTTGCCAATCATATTCAT 58.794 39.130 0.00 0.00 0.00 2.57
2894 3128 5.372373 TCACGGTTGCCAATCATATTCATA 58.628 37.500 0.00 0.00 0.00 2.15
2895 3129 5.238432 TCACGGTTGCCAATCATATTCATAC 59.762 40.000 0.00 0.00 0.00 2.39
2896 3130 4.518970 ACGGTTGCCAATCATATTCATACC 59.481 41.667 0.00 0.00 0.00 2.73
2897 3131 4.518590 CGGTTGCCAATCATATTCATACCA 59.481 41.667 0.00 0.00 0.00 3.25
2898 3132 5.183713 CGGTTGCCAATCATATTCATACCAT 59.816 40.000 0.00 0.00 0.00 3.55
2899 3133 6.392354 GGTTGCCAATCATATTCATACCATG 58.608 40.000 0.00 0.00 0.00 3.66
2900 3134 6.392354 GTTGCCAATCATATTCATACCATGG 58.608 40.000 11.19 11.19 0.00 3.66
2901 3135 5.002464 GCCAATCATATTCATACCATGGC 57.998 43.478 13.04 0.00 43.31 4.40
2902 3136 4.142093 GCCAATCATATTCATACCATGGCC 60.142 45.833 13.04 0.00 43.79 5.36
2903 3137 5.266788 CCAATCATATTCATACCATGGCCT 58.733 41.667 13.04 0.00 0.00 5.19
2904 3138 5.126545 CCAATCATATTCATACCATGGCCTG 59.873 44.000 13.04 9.84 0.00 4.85
2905 3139 4.999469 TCATATTCATACCATGGCCTGT 57.001 40.909 13.04 0.75 0.00 4.00
2915 3149 1.002868 ATGGCCTGTCTGTCTGTGC 60.003 57.895 3.32 0.00 0.00 4.57
2923 3157 1.300156 TCTGTCTGTGCGTGTCTGC 60.300 57.895 0.00 0.00 0.00 4.26
2943 3177 3.181449 TGCAGCAGTAGGGTTTCTGTAAA 60.181 43.478 0.00 0.00 34.57 2.01
2945 3179 4.277423 GCAGCAGTAGGGTTTCTGTAAAAA 59.723 41.667 0.00 0.00 34.57 1.94
2970 3204 3.715628 ACTGAGAAAAATGGTGTGCAC 57.284 42.857 10.75 10.75 0.00 4.57
2989 3223 2.813042 GCACGCTCTGAGCTCCAC 60.813 66.667 25.59 10.03 39.60 4.02
2994 3228 2.183811 CTCTGAGCTCCACCGCTG 59.816 66.667 12.15 0.00 41.08 5.18
3003 3237 0.962356 CTCCACCGCTGAAAGGCAAT 60.962 55.000 0.00 0.00 0.00 3.56
3004 3238 1.213537 CCACCGCTGAAAGGCAATG 59.786 57.895 0.00 0.00 0.00 2.82
3018 3252 0.733909 GCAATGCGCAAACTCTTCCC 60.734 55.000 17.11 0.00 41.79 3.97
3031 3265 1.215647 CTTCCCTTCCACGTCTCCG 59.784 63.158 0.00 0.00 40.83 4.63
3032 3266 2.227089 CTTCCCTTCCACGTCTCCGG 62.227 65.000 0.00 0.00 38.78 5.14
3033 3267 2.678934 CCCTTCCACGTCTCCGGA 60.679 66.667 2.93 2.93 38.78 5.14
3034 3268 2.280552 CCCTTCCACGTCTCCGGAA 61.281 63.158 5.23 5.12 38.99 4.30
3035 3269 1.669440 CCTTCCACGTCTCCGGAAA 59.331 57.895 5.23 0.00 40.71 3.13
3036 3270 0.034337 CCTTCCACGTCTCCGGAAAA 59.966 55.000 5.23 0.00 40.71 2.29
3037 3271 1.541670 CCTTCCACGTCTCCGGAAAAA 60.542 52.381 5.23 0.00 40.71 1.94
3068 3302 5.730296 AGACCAGGTCTCATATAAATCGG 57.270 43.478 17.31 0.00 38.71 4.18
3069 3303 4.528596 AGACCAGGTCTCATATAAATCGGG 59.471 45.833 17.31 0.00 38.71 5.14
3070 3304 4.232091 ACCAGGTCTCATATAAATCGGGT 58.768 43.478 0.00 0.00 0.00 5.28
3071 3305 4.040461 ACCAGGTCTCATATAAATCGGGTG 59.960 45.833 0.00 0.00 0.00 4.61
3072 3306 4.283467 CCAGGTCTCATATAAATCGGGTGA 59.717 45.833 0.00 0.00 0.00 4.02
3073 3307 5.473931 CAGGTCTCATATAAATCGGGTGAG 58.526 45.833 0.00 0.00 38.07 3.51
3074 3308 5.243954 CAGGTCTCATATAAATCGGGTGAGA 59.756 44.000 0.00 0.00 41.99 3.27
3076 3310 5.723672 TCTCATATAAATCGGGTGAGACC 57.276 43.478 0.00 0.00 40.06 3.85
3096 3330 2.680312 CATCCTGATGGAAGTCACGT 57.320 50.000 0.00 0.00 46.80 4.49
3097 3331 2.274437 CATCCTGATGGAAGTCACGTG 58.726 52.381 9.94 9.94 46.80 4.49
3098 3332 0.608130 TCCTGATGGAAGTCACGTGG 59.392 55.000 17.00 0.00 39.87 4.94
3099 3333 1.021390 CCTGATGGAAGTCACGTGGC 61.021 60.000 13.44 13.44 34.57 5.01
3100 3334 0.320683 CTGATGGAAGTCACGTGGCA 60.321 55.000 24.06 0.72 0.00 4.92
3101 3335 0.324614 TGATGGAAGTCACGTGGCAT 59.675 50.000 24.06 11.10 0.00 4.40
3102 3336 1.271325 TGATGGAAGTCACGTGGCATT 60.271 47.619 24.06 13.44 0.00 3.56
3103 3337 1.398390 GATGGAAGTCACGTGGCATTC 59.602 52.381 24.06 20.46 0.00 2.67
3487 3721 5.723672 GGTCTCACCCGAATTATATGAGA 57.276 43.478 6.95 6.95 42.63 3.27
3489 3723 5.723672 TCTCACCCGAATTATATGAGACC 57.276 43.478 6.95 0.00 40.59 3.85
3490 3724 5.394738 TCTCACCCGAATTATATGAGACCT 58.605 41.667 6.95 0.00 40.59 3.85
3491 3725 6.549242 TCTCACCCGAATTATATGAGACCTA 58.451 40.000 6.95 0.00 40.59 3.08
3492 3726 6.659668 TCTCACCCGAATTATATGAGACCTAG 59.340 42.308 6.95 0.00 40.59 3.02
3493 3727 6.312529 TCACCCGAATTATATGAGACCTAGT 58.687 40.000 0.00 0.00 0.00 2.57
3494 3728 6.433404 TCACCCGAATTATATGAGACCTAGTC 59.567 42.308 0.00 0.00 0.00 2.59
3495 3729 6.434652 CACCCGAATTATATGAGACCTAGTCT 59.565 42.308 0.00 0.00 46.42 3.24
3512 3746 9.713713 GACCTAGTCTCATAGAATTATTTTCCC 57.286 37.037 0.00 0.00 0.00 3.97
3513 3747 9.225682 ACCTAGTCTCATAGAATTATTTTCCCA 57.774 33.333 0.00 0.00 0.00 4.37
3514 3748 9.495572 CCTAGTCTCATAGAATTATTTTCCCAC 57.504 37.037 0.00 0.00 0.00 4.61
3515 3749 9.197694 CTAGTCTCATAGAATTATTTTCCCACG 57.802 37.037 0.00 0.00 0.00 4.94
3516 3750 7.565680 AGTCTCATAGAATTATTTTCCCACGT 58.434 34.615 0.00 0.00 0.00 4.49
3517 3751 7.711339 AGTCTCATAGAATTATTTTCCCACGTC 59.289 37.037 0.00 0.00 0.00 4.34
3518 3752 7.711339 GTCTCATAGAATTATTTTCCCACGTCT 59.289 37.037 0.00 0.00 0.00 4.18
3519 3753 7.926555 TCTCATAGAATTATTTTCCCACGTCTC 59.073 37.037 0.00 0.00 0.00 3.36
3520 3754 6.990349 TCATAGAATTATTTTCCCACGTCTCC 59.010 38.462 0.00 0.00 0.00 3.71
3564 3798 3.057736 GTGCTGACAATTCTGAATGCTGT 60.058 43.478 3.22 5.57 0.00 4.40
3565 3799 3.189910 TGCTGACAATTCTGAATGCTGTC 59.810 43.478 20.56 20.56 37.50 3.51
3566 3800 3.439476 GCTGACAATTCTGAATGCTGTCT 59.561 43.478 24.57 1.67 37.79 3.41
3567 3801 4.437121 GCTGACAATTCTGAATGCTGTCTC 60.437 45.833 24.57 16.93 37.79 3.36
3568 3802 4.005650 TGACAATTCTGAATGCTGTCTCC 58.994 43.478 24.57 9.54 37.79 3.71
3569 3803 3.350833 ACAATTCTGAATGCTGTCTCCC 58.649 45.455 3.22 0.00 0.00 4.30
3570 3804 3.245016 ACAATTCTGAATGCTGTCTCCCA 60.245 43.478 3.22 0.00 0.00 4.37
3571 3805 2.775911 TTCTGAATGCTGTCTCCCAG 57.224 50.000 0.00 0.00 44.53 4.45
3572 3806 1.942776 TCTGAATGCTGTCTCCCAGA 58.057 50.000 0.00 0.00 44.49 3.86
3573 3807 2.259917 TCTGAATGCTGTCTCCCAGAA 58.740 47.619 0.00 0.00 44.49 3.02
3574 3808 2.639347 TCTGAATGCTGTCTCCCAGAAA 59.361 45.455 0.00 0.00 44.49 2.52
3589 3823 9.303116 GTCTCCCAGAAAGATTCAGATATACTA 57.697 37.037 0.00 0.00 0.00 1.82
3595 3829 9.535170 CAGAAAGATTCAGATATACTACCCCTA 57.465 37.037 0.00 0.00 0.00 3.53
3602 3836 7.298678 TCAGATATACTACCCCTATGTCCAT 57.701 40.000 0.00 0.00 0.00 3.41
3604 3838 8.852894 TCAGATATACTACCCCTATGTCCATTA 58.147 37.037 0.00 0.00 0.00 1.90
3608 3842 9.799223 ATATACTACCCCTATGTCCATTAATGT 57.201 33.333 14.25 0.00 0.00 2.71
3610 3844 7.941053 ACTACCCCTATGTCCATTAATGTAA 57.059 36.000 14.25 0.00 0.00 2.41
3611 3845 7.974504 ACTACCCCTATGTCCATTAATGTAAG 58.025 38.462 14.25 0.00 0.00 2.34
3612 3846 7.792736 ACTACCCCTATGTCCATTAATGTAAGA 59.207 37.037 14.25 2.03 0.00 2.10
3613 3847 7.648177 ACCCCTATGTCCATTAATGTAAGAT 57.352 36.000 14.25 8.40 0.00 2.40
3614 3848 8.057246 ACCCCTATGTCCATTAATGTAAGATT 57.943 34.615 14.25 0.81 0.00 2.40
3615 3849 8.511126 ACCCCTATGTCCATTAATGTAAGATTT 58.489 33.333 14.25 0.51 0.00 2.17
3616 3850 9.367160 CCCCTATGTCCATTAATGTAAGATTTT 57.633 33.333 14.25 0.00 0.00 1.82
3664 3898 9.209297 CAAAATTTCTTACCTTTTCTTTTTGCG 57.791 29.630 0.00 0.00 0.00 4.85
3665 3899 8.710835 AAATTTCTTACCTTTTCTTTTTGCGA 57.289 26.923 0.00 0.00 0.00 5.10
3666 3900 7.930513 ATTTCTTACCTTTTCTTTTTGCGAG 57.069 32.000 0.00 0.00 0.00 5.03
3667 3901 6.445357 TTCTTACCTTTTCTTTTTGCGAGT 57.555 33.333 0.00 0.00 0.00 4.18
3668 3902 5.816919 TCTTACCTTTTCTTTTTGCGAGTG 58.183 37.500 0.00 0.00 0.00 3.51
3669 3903 5.587043 TCTTACCTTTTCTTTTTGCGAGTGA 59.413 36.000 0.00 0.00 0.00 3.41
3670 3904 4.292977 ACCTTTTCTTTTTGCGAGTGAG 57.707 40.909 0.00 0.00 0.00 3.51
3671 3905 3.694566 ACCTTTTCTTTTTGCGAGTGAGT 59.305 39.130 0.00 0.00 0.00 3.41
3672 3906 4.201920 ACCTTTTCTTTTTGCGAGTGAGTC 60.202 41.667 0.00 0.00 0.00 3.36
3673 3907 4.201910 CCTTTTCTTTTTGCGAGTGAGTCA 60.202 41.667 0.00 0.00 0.00 3.41
3674 3908 4.955925 TTTCTTTTTGCGAGTGAGTCAA 57.044 36.364 0.00 0.00 0.00 3.18
3675 3909 4.955925 TTCTTTTTGCGAGTGAGTCAAA 57.044 36.364 0.00 0.00 0.00 2.69
3676 3910 4.955925 TCTTTTTGCGAGTGAGTCAAAA 57.044 36.364 0.00 0.00 37.75 2.44
3677 3911 5.499139 TCTTTTTGCGAGTGAGTCAAAAT 57.501 34.783 0.00 0.00 38.82 1.82
3678 3912 5.273170 TCTTTTTGCGAGTGAGTCAAAATG 58.727 37.500 0.00 0.00 38.82 2.32
3679 3913 4.630894 TTTTGCGAGTGAGTCAAAATGT 57.369 36.364 0.00 0.00 35.53 2.71
3680 3914 3.878086 TTGCGAGTGAGTCAAAATGTC 57.122 42.857 0.00 0.00 0.00 3.06
3681 3915 3.111853 TGCGAGTGAGTCAAAATGTCT 57.888 42.857 0.00 0.00 0.00 3.41
3682 3916 3.466836 TGCGAGTGAGTCAAAATGTCTT 58.533 40.909 0.00 0.00 0.00 3.01
3683 3917 4.627058 TGCGAGTGAGTCAAAATGTCTTA 58.373 39.130 0.00 0.00 0.00 2.10
3684 3918 4.447724 TGCGAGTGAGTCAAAATGTCTTAC 59.552 41.667 0.00 0.00 0.00 2.34
3685 3919 4.447724 GCGAGTGAGTCAAAATGTCTTACA 59.552 41.667 0.00 0.00 27.84 2.41
3686 3920 5.120830 GCGAGTGAGTCAAAATGTCTTACAT 59.879 40.000 0.00 0.00 41.31 2.29
3698 3932 6.767524 AATGTCTTACATTATCCCGCAAAA 57.232 33.333 3.51 0.00 46.11 2.44
3699 3933 6.767524 ATGTCTTACATTATCCCGCAAAAA 57.232 33.333 0.00 0.00 34.67 1.94
3726 3960 6.921486 TGTCTTACATTAGTGAAGGTACCA 57.079 37.500 15.94 0.00 31.82 3.25
3727 3961 6.931838 TGTCTTACATTAGTGAAGGTACCAG 58.068 40.000 15.94 0.00 31.82 4.00
3728 3962 6.495872 TGTCTTACATTAGTGAAGGTACCAGT 59.504 38.462 15.94 0.26 31.82 4.00
3729 3963 7.670979 TGTCTTACATTAGTGAAGGTACCAGTA 59.329 37.037 15.94 0.00 31.82 2.74
3730 3964 7.972832 GTCTTACATTAGTGAAGGTACCAGTAC 59.027 40.741 15.94 9.38 31.82 2.73
3731 3965 7.892241 TCTTACATTAGTGAAGGTACCAGTACT 59.108 37.037 15.94 16.02 31.82 2.73
3732 3966 6.930068 ACATTAGTGAAGGTACCAGTACTT 57.070 37.500 15.94 0.00 36.36 2.24
3733 3967 6.698380 ACATTAGTGAAGGTACCAGTACTTG 58.302 40.000 15.94 12.23 36.36 3.16
3734 3968 7.093640 TACATTAGTGAAGGTACCAGTACTTGG 60.094 40.741 15.94 9.12 40.58 3.61
3742 3976 3.315765 CCAGTACTTGGCAAACGGA 57.684 52.632 0.00 0.00 40.87 4.69
3743 3977 1.600023 CCAGTACTTGGCAAACGGAA 58.400 50.000 0.00 0.00 40.87 4.30
3744 3978 1.535462 CCAGTACTTGGCAAACGGAAG 59.465 52.381 0.00 0.00 40.87 3.46
3745 3979 1.069227 CAGTACTTGGCAAACGGAAGC 60.069 52.381 0.00 0.00 0.00 3.86
3746 3980 0.948678 GTACTTGGCAAACGGAAGCA 59.051 50.000 0.00 0.00 0.00 3.91
3747 3981 1.069227 GTACTTGGCAAACGGAAGCAG 60.069 52.381 0.00 0.00 0.00 4.24
3748 3982 1.372128 CTTGGCAAACGGAAGCAGC 60.372 57.895 0.00 0.00 0.00 5.25
3749 3983 3.192954 TTGGCAAACGGAAGCAGCG 62.193 57.895 0.00 0.00 0.00 5.18
3750 3984 4.404654 GGCAAACGGAAGCAGCGG 62.405 66.667 0.00 0.00 0.00 5.52
3752 3986 3.659092 CAAACGGAAGCAGCGGCA 61.659 61.111 12.44 0.00 44.61 5.69
3753 3987 2.672996 AAACGGAAGCAGCGGCAT 60.673 55.556 12.44 0.00 44.61 4.40
3754 3988 1.376683 AAACGGAAGCAGCGGCATA 60.377 52.632 12.44 0.00 44.61 3.14
3755 3989 1.369091 AAACGGAAGCAGCGGCATAG 61.369 55.000 12.44 1.83 44.61 2.23
3756 3990 3.643978 CGGAAGCAGCGGCATAGC 61.644 66.667 12.44 3.13 44.61 2.97
3757 3991 3.282920 GGAAGCAGCGGCATAGCC 61.283 66.667 12.44 2.55 46.75 3.93
3773 4007 4.217159 CCACGTAGTAGCCGGGGC 62.217 72.222 2.18 0.18 42.77 5.80
3774 4008 4.564116 CACGTAGTAGCCGGGGCG 62.564 72.222 2.18 0.00 41.61 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.378514 CTCCCATTCCCAACCGTGG 60.379 63.158 0.00 0.00 45.53 4.94
56 57 1.076549 GCATCCCAGGTTCCCAACA 59.923 57.895 0.00 0.00 0.00 3.33
79 85 3.321497 CCGTGACAGAGAAAAGAGGAAG 58.679 50.000 0.00 0.00 0.00 3.46
81 87 1.000955 GCCGTGACAGAGAAAAGAGGA 59.999 52.381 0.00 0.00 0.00 3.71
83 89 2.064762 CAGCCGTGACAGAGAAAAGAG 58.935 52.381 0.00 0.00 0.00 2.85
84 90 1.412710 ACAGCCGTGACAGAGAAAAGA 59.587 47.619 0.00 0.00 0.00 2.52
85 91 1.871080 ACAGCCGTGACAGAGAAAAG 58.129 50.000 0.00 0.00 0.00 2.27
86 92 2.325583 AACAGCCGTGACAGAGAAAA 57.674 45.000 0.00 0.00 0.00 2.29
93 99 2.158871 AGGAGTAAAAACAGCCGTGACA 60.159 45.455 0.00 0.00 0.00 3.58
100 106 4.822350 AGGACAGAAAGGAGTAAAAACAGC 59.178 41.667 0.00 0.00 0.00 4.40
118 124 3.181501 CGTGCTTTGACTTTTCAAGGACA 60.182 43.478 1.04 0.00 42.79 4.02
119 125 3.363178 CGTGCTTTGACTTTTCAAGGAC 58.637 45.455 1.04 0.00 42.79 3.85
141 147 2.014068 GCCTTGATTCTTCCGAGGGTG 61.014 57.143 0.00 0.00 0.00 4.61
143 149 0.811616 CGCCTTGATTCTTCCGAGGG 60.812 60.000 0.00 0.00 0.00 4.30
162 168 2.210116 TGACTTTTCAACCACGAGAGC 58.790 47.619 0.00 0.00 0.00 4.09
189 195 5.124776 TGCGTTCATGTATAAAGGGGAAAAG 59.875 40.000 0.00 0.00 0.00 2.27
255 274 3.202906 TCTCAACCAGAAAAACTGTCCG 58.797 45.455 0.00 0.00 44.40 4.79
282 301 8.417273 TCTATATACAGGCACATGCTAAACTA 57.583 34.615 3.48 0.00 41.70 2.24
385 409 1.733402 TTTGCTGCAGTTTCCGTGGG 61.733 55.000 16.64 0.00 0.00 4.61
388 412 1.317613 TGATTTGCTGCAGTTTCCGT 58.682 45.000 16.64 0.00 0.00 4.69
389 413 2.095110 TGATGATTTGCTGCAGTTTCCG 60.095 45.455 16.64 0.00 0.00 4.30
390 414 3.508762 CTGATGATTTGCTGCAGTTTCC 58.491 45.455 16.64 0.00 0.00 3.13
392 416 2.561419 AGCTGATGATTTGCTGCAGTTT 59.439 40.909 16.64 0.00 35.54 2.66
483 539 3.059461 GTCTCGTCTAGGATCGTAAGCAG 60.059 52.174 0.00 0.00 37.18 4.24
486 542 4.553156 GCAAGTCTCGTCTAGGATCGTAAG 60.553 50.000 0.00 0.00 0.00 2.34
487 543 3.311871 GCAAGTCTCGTCTAGGATCGTAA 59.688 47.826 0.00 0.00 0.00 3.18
488 544 2.871022 GCAAGTCTCGTCTAGGATCGTA 59.129 50.000 0.00 0.00 0.00 3.43
489 545 1.671845 GCAAGTCTCGTCTAGGATCGT 59.328 52.381 0.00 0.00 0.00 3.73
491 547 3.637432 CATGCAAGTCTCGTCTAGGATC 58.363 50.000 0.00 0.00 0.00 3.36
492 548 2.223923 GCATGCAAGTCTCGTCTAGGAT 60.224 50.000 14.21 0.00 0.00 3.24
494 550 1.135915 AGCATGCAAGTCTCGTCTAGG 59.864 52.381 21.98 0.00 0.00 3.02
495 551 2.458951 GAGCATGCAAGTCTCGTCTAG 58.541 52.381 21.98 0.00 0.00 2.43
497 553 0.108424 GGAGCATGCAAGTCTCGTCT 60.108 55.000 21.98 0.00 0.00 4.18
498 554 1.086634 GGGAGCATGCAAGTCTCGTC 61.087 60.000 21.98 5.57 0.00 4.20
499 555 1.078848 GGGAGCATGCAAGTCTCGT 60.079 57.895 21.98 0.00 0.00 4.18
500 556 0.463295 ATGGGAGCATGCAAGTCTCG 60.463 55.000 21.98 0.00 0.00 4.04
501 557 1.674962 GAATGGGAGCATGCAAGTCTC 59.325 52.381 21.98 9.55 0.00 3.36
502 558 1.760192 GAATGGGAGCATGCAAGTCT 58.240 50.000 21.98 0.00 0.00 3.24
503 559 0.379669 CGAATGGGAGCATGCAAGTC 59.620 55.000 21.98 8.78 0.00 3.01
504 560 0.322816 ACGAATGGGAGCATGCAAGT 60.323 50.000 21.98 0.00 0.00 3.16
505 561 0.099968 CACGAATGGGAGCATGCAAG 59.900 55.000 21.98 4.00 0.00 4.01
506 562 1.936436 GCACGAATGGGAGCATGCAA 61.936 55.000 21.98 2.37 33.27 4.08
507 563 2.409055 GCACGAATGGGAGCATGCA 61.409 57.895 21.98 0.00 33.27 3.96
508 564 2.056481 GAGCACGAATGGGAGCATGC 62.056 60.000 10.51 10.51 0.00 4.06
509 565 1.442526 GGAGCACGAATGGGAGCATG 61.443 60.000 0.00 0.00 0.00 4.06
510 566 1.153086 GGAGCACGAATGGGAGCAT 60.153 57.895 0.00 0.00 0.00 3.79
511 567 0.975556 TAGGAGCACGAATGGGAGCA 60.976 55.000 0.00 0.00 0.00 4.26
512 568 0.530870 GTAGGAGCACGAATGGGAGC 60.531 60.000 0.00 0.00 0.00 4.70
513 569 0.824109 TGTAGGAGCACGAATGGGAG 59.176 55.000 0.00 0.00 0.00 4.30
514 570 1.496060 ATGTAGGAGCACGAATGGGA 58.504 50.000 0.00 0.00 0.00 4.37
515 571 2.365617 AGTATGTAGGAGCACGAATGGG 59.634 50.000 0.00 0.00 0.00 4.00
516 572 3.735237 AGTATGTAGGAGCACGAATGG 57.265 47.619 0.00 0.00 0.00 3.16
517 573 4.504461 GTCAAGTATGTAGGAGCACGAATG 59.496 45.833 0.00 0.00 0.00 2.67
518 574 4.402793 AGTCAAGTATGTAGGAGCACGAAT 59.597 41.667 0.00 0.00 0.00 3.34
519 575 3.762288 AGTCAAGTATGTAGGAGCACGAA 59.238 43.478 0.00 0.00 0.00 3.85
520 576 3.353557 AGTCAAGTATGTAGGAGCACGA 58.646 45.455 0.00 0.00 0.00 4.35
521 577 3.784701 AGTCAAGTATGTAGGAGCACG 57.215 47.619 0.00 0.00 0.00 5.34
522 578 5.073311 TCAAGTCAAGTATGTAGGAGCAC 57.927 43.478 0.00 0.00 0.00 4.40
523 579 5.939764 ATCAAGTCAAGTATGTAGGAGCA 57.060 39.130 0.00 0.00 0.00 4.26
524 580 6.818644 TCAAATCAAGTCAAGTATGTAGGAGC 59.181 38.462 0.00 0.00 0.00 4.70
525 581 8.954950 ATCAAATCAAGTCAAGTATGTAGGAG 57.045 34.615 0.00 0.00 0.00 3.69
526 582 9.166173 CAATCAAATCAAGTCAAGTATGTAGGA 57.834 33.333 0.00 0.00 0.00 2.94
527 583 8.950210 ACAATCAAATCAAGTCAAGTATGTAGG 58.050 33.333 0.00 0.00 0.00 3.18
534 590 9.301153 GTTTGTTACAATCAAATCAAGTCAAGT 57.699 29.630 0.00 0.00 37.18 3.16
535 591 9.299963 TGTTTGTTACAATCAAATCAAGTCAAG 57.700 29.630 6.40 0.00 37.18 3.02
536 592 9.645059 TTGTTTGTTACAATCAAATCAAGTCAA 57.355 25.926 16.30 0.00 41.73 3.18
537 593 9.645059 TTTGTTTGTTACAATCAAATCAAGTCA 57.355 25.926 22.62 6.08 45.72 3.41
547 603 9.239002 CGAACCTTATTTTGTTTGTTACAATCA 57.761 29.630 4.90 4.90 45.72 2.57
548 604 9.240159 ACGAACCTTATTTTGTTTGTTACAATC 57.760 29.630 0.00 0.00 45.72 2.67
549 605 9.589111 AACGAACCTTATTTTGTTTGTTACAAT 57.411 25.926 0.00 0.00 45.72 2.71
550 606 8.983307 AACGAACCTTATTTTGTTTGTTACAA 57.017 26.923 6.28 0.00 43.72 2.41
551 607 7.701501 GGAACGAACCTTATTTTGTTTGTTACA 59.298 33.333 11.18 0.00 44.88 2.41
552 608 7.167968 GGGAACGAACCTTATTTTGTTTGTTAC 59.832 37.037 8.55 8.55 44.88 2.50
553 609 7.147949 TGGGAACGAACCTTATTTTGTTTGTTA 60.148 33.333 7.72 0.00 44.88 2.41
554 610 6.044046 GGGAACGAACCTTATTTTGTTTGTT 58.956 36.000 7.52 7.52 46.57 2.83
555 611 5.127356 TGGGAACGAACCTTATTTTGTTTGT 59.873 36.000 0.00 0.00 40.06 2.83
556 612 5.460748 GTGGGAACGAACCTTATTTTGTTTG 59.539 40.000 0.00 0.00 33.89 2.93
557 613 5.452216 GGTGGGAACGAACCTTATTTTGTTT 60.452 40.000 0.00 0.00 33.89 2.83
558 614 4.038282 GGTGGGAACGAACCTTATTTTGTT 59.962 41.667 0.00 0.00 36.04 2.83
559 615 3.570975 GGTGGGAACGAACCTTATTTTGT 59.429 43.478 0.00 0.00 33.58 2.83
560 616 3.057104 GGGTGGGAACGAACCTTATTTTG 60.057 47.826 0.00 0.00 36.21 2.44
561 617 3.159472 GGGTGGGAACGAACCTTATTTT 58.841 45.455 0.00 0.00 36.21 1.82
562 618 2.799017 GGGTGGGAACGAACCTTATTT 58.201 47.619 0.00 0.00 36.21 1.40
563 619 1.339342 CGGGTGGGAACGAACCTTATT 60.339 52.381 0.00 0.00 36.21 1.40
564 620 0.251073 CGGGTGGGAACGAACCTTAT 59.749 55.000 0.00 0.00 36.21 1.73
565 621 1.672898 CGGGTGGGAACGAACCTTA 59.327 57.895 0.00 0.00 36.21 2.69
566 622 2.428622 CGGGTGGGAACGAACCTT 59.571 61.111 0.00 0.00 36.21 3.50
567 623 4.324991 GCGGGTGGGAACGAACCT 62.325 66.667 0.00 0.00 36.21 3.50
568 624 2.453379 TAAGCGGGTGGGAACGAACC 62.453 60.000 0.00 0.00 35.33 3.62
569 625 0.603439 TTAAGCGGGTGGGAACGAAC 60.603 55.000 0.00 0.00 0.00 3.95
570 626 0.108207 TTTAAGCGGGTGGGAACGAA 59.892 50.000 0.00 0.00 0.00 3.85
571 627 0.108207 TTTTAAGCGGGTGGGAACGA 59.892 50.000 0.00 0.00 0.00 3.85
572 628 1.131693 GATTTTAAGCGGGTGGGAACG 59.868 52.381 0.00 0.00 0.00 3.95
573 629 2.163613 CTGATTTTAAGCGGGTGGGAAC 59.836 50.000 0.00 0.00 0.00 3.62
574 630 2.442413 CTGATTTTAAGCGGGTGGGAA 58.558 47.619 0.00 0.00 0.00 3.97
575 631 1.953311 GCTGATTTTAAGCGGGTGGGA 60.953 52.381 0.00 0.00 0.00 4.37
576 632 0.455815 GCTGATTTTAAGCGGGTGGG 59.544 55.000 0.00 0.00 0.00 4.61
583 639 2.906354 TCTCTCCCGCTGATTTTAAGC 58.094 47.619 0.00 0.00 37.31 3.09
584 640 4.697514 TCATCTCTCCCGCTGATTTTAAG 58.302 43.478 0.00 0.00 0.00 1.85
585 641 4.753516 TCATCTCTCCCGCTGATTTTAA 57.246 40.909 0.00 0.00 0.00 1.52
586 642 4.963318 ATCATCTCTCCCGCTGATTTTA 57.037 40.909 0.00 0.00 0.00 1.52
587 643 3.853355 ATCATCTCTCCCGCTGATTTT 57.147 42.857 0.00 0.00 0.00 1.82
588 644 3.853355 AATCATCTCTCCCGCTGATTT 57.147 42.857 0.00 0.00 35.38 2.17
589 645 3.643320 TGTAATCATCTCTCCCGCTGATT 59.357 43.478 0.00 0.00 40.44 2.57
590 646 3.234353 TGTAATCATCTCTCCCGCTGAT 58.766 45.455 0.00 0.00 0.00 2.90
591 647 2.666317 TGTAATCATCTCTCCCGCTGA 58.334 47.619 0.00 0.00 0.00 4.26
592 648 3.674528 ATGTAATCATCTCTCCCGCTG 57.325 47.619 0.00 0.00 0.00 5.18
593 649 7.482169 TTATAATGTAATCATCTCTCCCGCT 57.518 36.000 0.00 0.00 32.56 5.52
594 650 8.035394 TCTTTATAATGTAATCATCTCTCCCGC 58.965 37.037 0.00 0.00 32.56 6.13
595 651 9.929180 TTCTTTATAATGTAATCATCTCTCCCG 57.071 33.333 0.00 0.00 32.56 5.14
629 685 2.310538 CTTGCTCCCACCTGTCTTTTT 58.689 47.619 0.00 0.00 0.00 1.94
630 686 1.986882 CTTGCTCCCACCTGTCTTTT 58.013 50.000 0.00 0.00 0.00 2.27
631 687 0.538287 GCTTGCTCCCACCTGTCTTT 60.538 55.000 0.00 0.00 0.00 2.52
632 688 1.073897 GCTTGCTCCCACCTGTCTT 59.926 57.895 0.00 0.00 0.00 3.01
633 689 2.753029 GCTTGCTCCCACCTGTCT 59.247 61.111 0.00 0.00 0.00 3.41
634 690 2.360475 GGCTTGCTCCCACCTGTC 60.360 66.667 0.00 0.00 0.00 3.51
635 691 4.335647 CGGCTTGCTCCCACCTGT 62.336 66.667 0.00 0.00 0.00 4.00
638 694 4.115199 ATCCGGCTTGCTCCCACC 62.115 66.667 0.00 0.00 0.00 4.61
639 695 2.514824 GATCCGGCTTGCTCCCAC 60.515 66.667 0.00 0.00 0.00 4.61
640 696 3.797353 GGATCCGGCTTGCTCCCA 61.797 66.667 0.00 0.00 0.00 4.37
641 697 4.918201 CGGATCCGGCTTGCTCCC 62.918 72.222 26.95 0.00 35.56 4.30
653 709 1.823797 ACTAGTAGGATCGCCGGATC 58.176 55.000 5.05 0.00 46.85 3.36
654 710 2.305343 ACTACTAGTAGGATCGCCGGAT 59.695 50.000 29.05 5.80 39.96 4.18
655 711 1.696336 ACTACTAGTAGGATCGCCGGA 59.304 52.381 29.05 0.00 39.96 5.14
656 712 2.075338 GACTACTAGTAGGATCGCCGG 58.925 57.143 29.05 0.00 39.96 6.13
670 726 3.388024 TGCAGGTTCTGAAACAGACTACT 59.612 43.478 8.34 0.00 40.46 2.57
672 728 3.641436 TCTGCAGGTTCTGAAACAGACTA 59.359 43.478 15.13 0.00 40.46 2.59
673 729 2.435805 TCTGCAGGTTCTGAAACAGACT 59.564 45.455 15.13 0.00 40.46 3.24
674 730 2.838736 TCTGCAGGTTCTGAAACAGAC 58.161 47.619 15.13 0.00 40.46 3.51
675 731 3.777106 ATCTGCAGGTTCTGAAACAGA 57.223 42.857 15.13 11.17 38.87 3.41
676 732 4.037208 ACAAATCTGCAGGTTCTGAAACAG 59.963 41.667 13.77 0.27 37.10 3.16
677 733 3.953612 ACAAATCTGCAGGTTCTGAAACA 59.046 39.130 13.77 0.00 37.10 2.83
688 744 1.210931 CGGCCACACAAATCTGCAG 59.789 57.895 7.63 7.63 0.00 4.41
706 762 0.371645 CGAGCGAGTCAAATTCAGGC 59.628 55.000 0.00 0.00 0.00 4.85
734 790 1.271325 TGGTTGTGGCATTCTGACGAT 60.271 47.619 0.00 0.00 0.00 3.73
855 912 1.226603 CTCCTTTAGCGACGGACCG 60.227 63.158 13.61 13.61 0.00 4.79
866 923 3.143728 GGTCAAAGCCGTTTCTCCTTTA 58.856 45.455 0.00 0.00 0.00 1.85
938 1023 4.039852 AGAAGAAGAAGAAGAAGAAGGCGT 59.960 41.667 0.00 0.00 0.00 5.68
942 1027 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
943 1028 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
944 1029 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
945 1030 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
946 1031 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
947 1032 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
949 1034 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
950 1035 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
951 1036 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
952 1037 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
953 1038 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
954 1039 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
955 1040 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
956 1041 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
957 1042 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
958 1043 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
959 1044 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
960 1045 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
961 1046 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
962 1047 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
963 1048 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
964 1049 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
965 1050 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
966 1051 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1005 1090 2.584391 GGAAGGTGACGGGCAGAGT 61.584 63.158 0.00 0.00 0.00 3.24
1033 1155 2.075489 GGCGTACGCGATCGAGATG 61.075 63.158 31.78 14.34 43.06 2.90
1065 1187 0.322816 TGCTCTTGTGGGGCTTCATC 60.323 55.000 0.00 0.00 0.00 2.92
1176 1298 1.310904 TGTTGTGGTAAGTTTCGGCC 58.689 50.000 0.00 0.00 0.00 6.13
1184 1306 0.372334 GCGGCGTATGTTGTGGTAAG 59.628 55.000 9.37 0.00 0.00 2.34
1191 1316 3.925238 GAGGCGCGGCGTATGTTG 61.925 66.667 27.74 0.00 0.00 3.33
1269 1397 3.789791 GCGAAGTTGACGATGATACGGTA 60.790 47.826 0.00 0.00 37.61 4.02
1272 1400 1.517276 GGCGAAGTTGACGATGATACG 59.483 52.381 0.00 0.00 39.31 3.06
1274 1402 1.535226 CCGGCGAAGTTGACGATGATA 60.535 52.381 9.30 0.00 0.00 2.15
1278 1418 2.813908 GCCGGCGAAGTTGACGAT 60.814 61.111 12.58 0.00 0.00 3.73
1284 1424 2.668550 GAGTTGGCCGGCGAAGTT 60.669 61.111 29.11 18.60 0.00 2.66
1285 1425 4.699522 GGAGTTGGCCGGCGAAGT 62.700 66.667 28.94 28.94 0.00 3.01
1287 1427 4.388499 GAGGAGTTGGCCGGCGAA 62.388 66.667 20.90 20.90 0.00 4.70
1290 1430 4.475135 GAGGAGGAGTTGGCCGGC 62.475 72.222 21.18 21.18 0.00 6.13
1569 1733 4.493747 GAGTCCCCGACGAAGGCG 62.494 72.222 0.00 0.00 44.79 5.52
1611 1775 1.217511 CGACAGGATGCAGAGCAGT 59.782 57.895 0.00 0.00 43.65 4.40
1639 1803 3.693245 CAGATCTGCCGTGTACGC 58.307 61.111 10.38 0.00 38.18 4.42
1651 1824 3.141398 TGTTTGTCCAACTGAGCAGATC 58.859 45.455 4.21 0.00 36.21 2.75
1656 1829 1.067060 GGGTTGTTTGTCCAACTGAGC 59.933 52.381 4.29 0.00 43.36 4.26
1657 1830 2.374184 TGGGTTGTTTGTCCAACTGAG 58.626 47.619 4.29 0.00 43.36 3.35
1660 1833 2.158971 GCAATGGGTTGTTTGTCCAACT 60.159 45.455 4.29 0.00 43.36 3.16
1661 1834 2.158971 AGCAATGGGTTGTTTGTCCAAC 60.159 45.455 0.00 0.00 43.15 3.77
1662 1835 2.102252 GAGCAATGGGTTGTTTGTCCAA 59.898 45.455 0.00 0.00 37.65 3.53
1664 1837 1.963515 AGAGCAATGGGTTGTTTGTCC 59.036 47.619 0.00 0.00 37.65 4.02
1666 1839 2.102925 CCAAGAGCAATGGGTTGTTTGT 59.897 45.455 0.00 0.00 37.65 2.83
1667 1840 2.758009 CCAAGAGCAATGGGTTGTTTG 58.242 47.619 0.00 0.00 37.65 2.93
1668 1841 1.070601 GCCAAGAGCAATGGGTTGTTT 59.929 47.619 4.84 0.00 42.97 2.83
1682 1869 2.337361 TCGACTCGAGTTGCCAAGA 58.663 52.632 25.44 12.72 0.00 3.02
1701 1888 1.583054 GACATGCTATTCCCGTGACC 58.417 55.000 0.00 0.00 0.00 4.02
1703 1890 0.468226 GGGACATGCTATTCCCGTGA 59.532 55.000 3.49 0.00 42.35 4.35
1722 1912 3.104766 GTGCCATGCATGAGTCGG 58.895 61.111 28.31 11.98 41.91 4.79
1744 1935 1.516603 GCGGCTAGAAGTGGACGAC 60.517 63.158 0.00 0.00 0.00 4.34
1779 1972 0.593518 TGCAACATGTTCAAACGCCG 60.594 50.000 8.48 0.00 0.00 6.46
1862 2055 1.139095 GCCGTAGTGGAAGTCTCGG 59.861 63.158 0.00 0.00 42.00 4.63
1916 2109 1.147817 AGGTTGGCTTTGACCAGGAAT 59.852 47.619 0.00 0.00 41.82 3.01
1928 2121 4.400961 GCGCTGGAGAGGTTGGCT 62.401 66.667 0.00 0.00 0.00 4.75
2327 2532 4.351938 CGGAACTCGGCCACGACA 62.352 66.667 2.24 0.00 45.59 4.35
2374 2593 0.032952 GTATGGGGCTGCATGCATTG 59.967 55.000 22.97 12.00 45.15 2.82
2375 2594 1.457823 CGTATGGGGCTGCATGCATT 61.458 55.000 22.97 4.85 45.15 3.56
2420 2639 1.202452 GCAGCCAACTTTCTTGTTGCT 60.202 47.619 0.00 0.00 44.12 3.91
2487 2706 3.754965 CCCAAAGACAAACCATCAGAGA 58.245 45.455 0.00 0.00 0.00 3.10
2488 2707 2.229784 GCCCAAAGACAAACCATCAGAG 59.770 50.000 0.00 0.00 0.00 3.35
2586 2814 1.296392 CCTCCGTGATGTCCAGCAA 59.704 57.895 0.00 0.00 0.00 3.91
2712 2940 2.583593 GCTCCACAGGTCGATCGC 60.584 66.667 11.09 5.58 0.00 4.58
2764 2992 0.947660 ATGTCAGTCAGCACGCTGTG 60.948 55.000 18.05 10.59 43.96 3.66
2765 2993 0.250038 AATGTCAGTCAGCACGCTGT 60.250 50.000 18.05 0.00 43.96 4.40
2767 2995 0.033920 TCAATGTCAGTCAGCACGCT 59.966 50.000 0.00 0.00 0.00 5.07
2768 2996 0.441533 CTCAATGTCAGTCAGCACGC 59.558 55.000 0.00 0.00 0.00 5.34
2769 2997 1.458445 CACTCAATGTCAGTCAGCACG 59.542 52.381 0.00 0.00 0.00 5.34
2770 2998 2.735663 CTCACTCAATGTCAGTCAGCAC 59.264 50.000 0.00 0.00 0.00 4.40
2771 2999 2.366590 ACTCACTCAATGTCAGTCAGCA 59.633 45.455 0.00 0.00 0.00 4.41
2772 3000 3.037431 ACTCACTCAATGTCAGTCAGC 57.963 47.619 0.00 0.00 0.00 4.26
2773 3001 4.880759 AGAACTCACTCAATGTCAGTCAG 58.119 43.478 0.00 0.00 0.00 3.51
2774 3002 4.944619 AGAACTCACTCAATGTCAGTCA 57.055 40.909 0.00 0.00 0.00 3.41
2775 3003 5.404968 CAGAAGAACTCACTCAATGTCAGTC 59.595 44.000 0.00 0.00 0.00 3.51
2776 3004 5.295950 CAGAAGAACTCACTCAATGTCAGT 58.704 41.667 0.00 0.00 0.00 3.41
2797 3025 7.117199 AAGTCTGGCTTTGATGCATTAGCAG 62.117 44.000 22.64 18.38 44.47 4.24
2801 3029 4.081406 ACAAGTCTGGCTTTGATGCATTA 58.919 39.130 0.00 0.00 34.69 1.90
2810 3038 6.491403 AGATCAATTTACACAAGTCTGGCTTT 59.509 34.615 0.00 0.00 34.69 3.51
2838 3067 4.032104 GCTCTGAATTAATGCGGCAAAAAG 59.968 41.667 6.82 0.00 0.00 2.27
2857 3091 1.139058 ACCGTGAACTCACTTTGCTCT 59.861 47.619 8.16 0.00 44.34 4.09
2869 3103 4.142491 TGAATATGATTGGCAACCGTGAAC 60.142 41.667 0.00 0.00 0.00 3.18
2879 3113 4.142093 GGCCATGGTATGAATATGATTGGC 60.142 45.833 14.67 0.00 44.89 4.52
2880 3114 5.126545 CAGGCCATGGTATGAATATGATTGG 59.873 44.000 14.67 0.00 0.00 3.16
2881 3115 5.713389 ACAGGCCATGGTATGAATATGATTG 59.287 40.000 20.96 0.00 0.00 2.67
2882 3116 5.895807 ACAGGCCATGGTATGAATATGATT 58.104 37.500 20.96 0.00 0.00 2.57
2883 3117 5.252397 AGACAGGCCATGGTATGAATATGAT 59.748 40.000 20.96 1.34 0.00 2.45
2884 3118 4.598807 AGACAGGCCATGGTATGAATATGA 59.401 41.667 20.96 0.00 0.00 2.15
2885 3119 4.698780 CAGACAGGCCATGGTATGAATATG 59.301 45.833 20.96 11.44 0.00 1.78
2886 3120 4.352001 ACAGACAGGCCATGGTATGAATAT 59.648 41.667 20.96 2.89 31.11 1.28
2887 3121 3.716353 ACAGACAGGCCATGGTATGAATA 59.284 43.478 20.96 0.00 31.11 1.75
2888 3122 2.511218 ACAGACAGGCCATGGTATGAAT 59.489 45.455 20.96 8.94 31.11 2.57
2889 3123 1.915489 ACAGACAGGCCATGGTATGAA 59.085 47.619 20.96 0.00 31.11 2.57
2890 3124 1.486310 GACAGACAGGCCATGGTATGA 59.514 52.381 20.96 0.00 31.11 2.15
2891 3125 1.487976 AGACAGACAGGCCATGGTATG 59.512 52.381 14.67 14.63 32.75 2.39
2892 3126 1.487976 CAGACAGACAGGCCATGGTAT 59.512 52.381 14.67 0.00 0.00 2.73
2893 3127 0.904649 CAGACAGACAGGCCATGGTA 59.095 55.000 14.67 0.00 0.00 3.25
2894 3128 1.130054 ACAGACAGACAGGCCATGGT 61.130 55.000 14.67 0.00 0.00 3.55
2895 3129 0.675837 CACAGACAGACAGGCCATGG 60.676 60.000 7.63 7.63 0.00 3.66
2896 3130 1.303799 GCACAGACAGACAGGCCATG 61.304 60.000 5.01 2.64 0.00 3.66
2897 3131 1.002868 GCACAGACAGACAGGCCAT 60.003 57.895 5.01 0.00 0.00 4.40
2898 3132 2.427320 GCACAGACAGACAGGCCA 59.573 61.111 5.01 0.00 0.00 5.36
2899 3133 2.740055 CGCACAGACAGACAGGCC 60.740 66.667 0.00 0.00 0.00 5.19
2900 3134 2.029666 ACGCACAGACAGACAGGC 59.970 61.111 0.00 0.00 0.00 4.85
2901 3135 0.941463 GACACGCACAGACAGACAGG 60.941 60.000 0.00 0.00 0.00 4.00
2902 3136 0.031314 AGACACGCACAGACAGACAG 59.969 55.000 0.00 0.00 0.00 3.51
2903 3137 0.249031 CAGACACGCACAGACAGACA 60.249 55.000 0.00 0.00 0.00 3.41
2904 3138 1.552348 GCAGACACGCACAGACAGAC 61.552 60.000 0.00 0.00 0.00 3.51
2905 3139 1.300156 GCAGACACGCACAGACAGA 60.300 57.895 0.00 0.00 0.00 3.41
2915 3149 1.446792 CCCTACTGCTGCAGACACG 60.447 63.158 34.28 17.62 35.18 4.49
2946 3180 5.351189 GTGCACACCATTTTTCTCAGTTTTT 59.649 36.000 13.17 0.00 0.00 1.94
2947 3181 4.869861 GTGCACACCATTTTTCTCAGTTTT 59.130 37.500 13.17 0.00 0.00 2.43
2989 3223 2.202518 CGCATTGCCTTTCAGCGG 60.203 61.111 2.41 0.00 44.20 5.52
2992 3226 0.785979 GTTTGCGCATTGCCTTTCAG 59.214 50.000 12.75 0.00 45.60 3.02
2994 3228 1.063031 GAGTTTGCGCATTGCCTTTC 58.937 50.000 12.75 0.00 45.60 2.62
3003 3237 0.889186 GGAAGGGAAGAGTTTGCGCA 60.889 55.000 5.66 5.66 0.00 6.09
3004 3238 0.889186 TGGAAGGGAAGAGTTTGCGC 60.889 55.000 0.00 0.00 0.00 6.09
3046 3280 4.528596 CCCGATTTATATGAGACCTGGTCT 59.471 45.833 28.70 28.70 46.42 3.85
3047 3281 4.283722 ACCCGATTTATATGAGACCTGGTC 59.716 45.833 19.20 19.20 0.00 4.02
3048 3282 4.040461 CACCCGATTTATATGAGACCTGGT 59.960 45.833 0.00 0.00 0.00 4.00
3049 3283 4.283467 TCACCCGATTTATATGAGACCTGG 59.717 45.833 0.00 0.00 0.00 4.45
3050 3284 5.243954 TCTCACCCGATTTATATGAGACCTG 59.756 44.000 0.00 0.00 40.59 4.00
3051 3285 5.394738 TCTCACCCGATTTATATGAGACCT 58.605 41.667 0.00 0.00 40.59 3.85
3052 3286 5.723672 TCTCACCCGATTTATATGAGACC 57.276 43.478 0.00 0.00 40.59 3.85
3054 3288 5.723672 GGTCTCACCCGATTTATATGAGA 57.276 43.478 0.00 0.00 42.63 3.27
3077 3311 2.274437 CACGTGACTTCCATCAGGATG 58.726 52.381 10.90 2.24 45.26 3.51
3078 3312 1.208052 CCACGTGACTTCCATCAGGAT 59.792 52.381 19.30 0.00 45.26 3.24
3079 3313 0.608130 CCACGTGACTTCCATCAGGA 59.392 55.000 19.30 0.00 43.93 3.86
3080 3314 1.021390 GCCACGTGACTTCCATCAGG 61.021 60.000 19.30 0.00 39.76 3.86
3081 3315 0.320683 TGCCACGTGACTTCCATCAG 60.321 55.000 19.30 0.00 0.00 2.90
3082 3316 0.324614 ATGCCACGTGACTTCCATCA 59.675 50.000 19.30 2.00 0.00 3.07
3083 3317 1.398390 GAATGCCACGTGACTTCCATC 59.602 52.381 19.30 2.14 0.00 3.51
3084 3318 1.453155 GAATGCCACGTGACTTCCAT 58.547 50.000 19.30 8.29 0.00 3.41
3085 3319 2.927004 GAATGCCACGTGACTTCCA 58.073 52.632 19.30 6.22 0.00 3.53
3465 3699 5.723672 TCTCATATAATTCGGGTGAGACC 57.276 43.478 8.03 0.00 40.06 3.85
3467 3701 5.394738 AGGTCTCATATAATTCGGGTGAGA 58.605 41.667 8.03 8.03 41.99 3.27
3468 3702 5.730296 AGGTCTCATATAATTCGGGTGAG 57.270 43.478 0.00 0.00 38.07 3.51
3469 3703 6.312529 ACTAGGTCTCATATAATTCGGGTGA 58.687 40.000 0.00 0.00 0.00 4.02
3470 3704 6.434652 AGACTAGGTCTCATATAATTCGGGTG 59.565 42.308 0.00 0.00 38.71 4.61
3471 3705 6.553857 AGACTAGGTCTCATATAATTCGGGT 58.446 40.000 0.00 0.00 38.71 5.28
3486 3720 9.713713 GGGAAAATAATTCTATGAGACTAGGTC 57.286 37.037 0.00 0.00 0.00 3.85
3487 3721 9.225682 TGGGAAAATAATTCTATGAGACTAGGT 57.774 33.333 0.00 0.00 0.00 3.08
3488 3722 9.495572 GTGGGAAAATAATTCTATGAGACTAGG 57.504 37.037 0.00 0.00 0.00 3.02
3489 3723 9.197694 CGTGGGAAAATAATTCTATGAGACTAG 57.802 37.037 0.00 0.00 0.00 2.57
3490 3724 8.701895 ACGTGGGAAAATAATTCTATGAGACTA 58.298 33.333 0.00 0.00 0.00 2.59
3491 3725 7.565680 ACGTGGGAAAATAATTCTATGAGACT 58.434 34.615 0.00 0.00 0.00 3.24
3492 3726 7.711339 AGACGTGGGAAAATAATTCTATGAGAC 59.289 37.037 0.00 0.00 0.00 3.36
3493 3727 7.792032 AGACGTGGGAAAATAATTCTATGAGA 58.208 34.615 0.00 0.00 0.00 3.27
3494 3728 7.171678 GGAGACGTGGGAAAATAATTCTATGAG 59.828 40.741 0.00 0.00 0.00 2.90
3495 3729 6.990349 GGAGACGTGGGAAAATAATTCTATGA 59.010 38.462 0.00 0.00 0.00 2.15
3496 3730 6.992715 AGGAGACGTGGGAAAATAATTCTATG 59.007 38.462 0.00 0.00 0.00 2.23
3497 3731 7.138054 AGGAGACGTGGGAAAATAATTCTAT 57.862 36.000 0.00 0.00 0.00 1.98
3498 3732 6.555463 AGGAGACGTGGGAAAATAATTCTA 57.445 37.500 0.00 0.00 0.00 2.10
3499 3733 5.437191 AGGAGACGTGGGAAAATAATTCT 57.563 39.130 0.00 0.00 0.00 2.40
3500 3734 6.238402 GCTTAGGAGACGTGGGAAAATAATTC 60.238 42.308 0.00 0.00 0.00 2.17
3501 3735 5.589050 GCTTAGGAGACGTGGGAAAATAATT 59.411 40.000 0.00 0.00 0.00 1.40
3502 3736 5.123936 GCTTAGGAGACGTGGGAAAATAAT 58.876 41.667 0.00 0.00 0.00 1.28
3503 3737 4.020039 TGCTTAGGAGACGTGGGAAAATAA 60.020 41.667 0.00 0.00 0.00 1.40
3504 3738 3.516300 TGCTTAGGAGACGTGGGAAAATA 59.484 43.478 0.00 0.00 0.00 1.40
3505 3739 2.304761 TGCTTAGGAGACGTGGGAAAAT 59.695 45.455 0.00 0.00 0.00 1.82
3506 3740 1.695242 TGCTTAGGAGACGTGGGAAAA 59.305 47.619 0.00 0.00 0.00 2.29
3507 3741 1.344065 TGCTTAGGAGACGTGGGAAA 58.656 50.000 0.00 0.00 0.00 3.13
3508 3742 1.344065 TTGCTTAGGAGACGTGGGAA 58.656 50.000 0.00 0.00 0.00 3.97
3509 3743 1.275291 CTTTGCTTAGGAGACGTGGGA 59.725 52.381 0.00 0.00 0.00 4.37
3510 3744 1.275291 TCTTTGCTTAGGAGACGTGGG 59.725 52.381 0.00 0.00 0.00 4.61
3511 3745 2.288825 TGTCTTTGCTTAGGAGACGTGG 60.289 50.000 0.00 0.00 42.02 4.94
3512 3746 3.026630 TGTCTTTGCTTAGGAGACGTG 57.973 47.619 0.00 0.00 42.02 4.49
3513 3747 3.181469 TGTTGTCTTTGCTTAGGAGACGT 60.181 43.478 0.00 0.00 42.02 4.34
3514 3748 3.390135 TGTTGTCTTTGCTTAGGAGACG 58.610 45.455 0.00 0.00 42.02 4.18
3515 3749 4.757149 ACATGTTGTCTTTGCTTAGGAGAC 59.243 41.667 0.00 0.00 40.09 3.36
3516 3750 4.973168 ACATGTTGTCTTTGCTTAGGAGA 58.027 39.130 0.00 0.00 0.00 3.71
3517 3751 5.288543 GACATGTTGTCTTTGCTTAGGAG 57.711 43.478 0.00 0.00 43.73 3.69
3564 3798 9.303116 GTAGTATATCTGAATCTTTCTGGGAGA 57.697 37.037 0.00 0.00 0.00 3.71
3565 3799 8.527810 GGTAGTATATCTGAATCTTTCTGGGAG 58.472 40.741 0.00 0.00 0.00 4.30
3566 3800 7.455008 GGGTAGTATATCTGAATCTTTCTGGGA 59.545 40.741 0.00 0.00 0.00 4.37
3567 3801 7.310734 GGGGTAGTATATCTGAATCTTTCTGGG 60.311 44.444 0.00 0.00 0.00 4.45
3568 3802 7.456269 AGGGGTAGTATATCTGAATCTTTCTGG 59.544 40.741 0.00 0.00 0.00 3.86
3569 3803 8.429237 AGGGGTAGTATATCTGAATCTTTCTG 57.571 38.462 0.00 0.00 0.00 3.02
3572 3806 9.845214 ACATAGGGGTAGTATATCTGAATCTTT 57.155 33.333 0.00 0.00 0.00 2.52
3573 3807 9.482175 GACATAGGGGTAGTATATCTGAATCTT 57.518 37.037 0.00 0.00 0.00 2.40
3574 3808 8.062536 GGACATAGGGGTAGTATATCTGAATCT 58.937 40.741 0.00 0.00 0.00 2.40
3589 3823 7.648177 ATCTTACATTAATGGACATAGGGGT 57.352 36.000 19.37 0.00 0.00 4.95
3638 3872 9.209297 CGCAAAAAGAAAAGGTAAGAAATTTTG 57.791 29.630 0.00 0.00 37.94 2.44
3639 3873 9.157104 TCGCAAAAAGAAAAGGTAAGAAATTTT 57.843 25.926 0.00 0.00 0.00 1.82
3640 3874 8.710835 TCGCAAAAAGAAAAGGTAAGAAATTT 57.289 26.923 0.00 0.00 0.00 1.82
3641 3875 7.979537 ACTCGCAAAAAGAAAAGGTAAGAAATT 59.020 29.630 0.00 0.00 0.00 1.82
3642 3876 7.435192 CACTCGCAAAAAGAAAAGGTAAGAAAT 59.565 33.333 0.00 0.00 0.00 2.17
3643 3877 6.750039 CACTCGCAAAAAGAAAAGGTAAGAAA 59.250 34.615 0.00 0.00 0.00 2.52
3644 3878 6.094325 TCACTCGCAAAAAGAAAAGGTAAGAA 59.906 34.615 0.00 0.00 0.00 2.52
3645 3879 5.587043 TCACTCGCAAAAAGAAAAGGTAAGA 59.413 36.000 0.00 0.00 0.00 2.10
3646 3880 5.816919 TCACTCGCAAAAAGAAAAGGTAAG 58.183 37.500 0.00 0.00 0.00 2.34
3647 3881 5.355910 ACTCACTCGCAAAAAGAAAAGGTAA 59.644 36.000 0.00 0.00 0.00 2.85
3648 3882 4.879545 ACTCACTCGCAAAAAGAAAAGGTA 59.120 37.500 0.00 0.00 0.00 3.08
3649 3883 3.694566 ACTCACTCGCAAAAAGAAAAGGT 59.305 39.130 0.00 0.00 0.00 3.50
3650 3884 4.201910 TGACTCACTCGCAAAAAGAAAAGG 60.202 41.667 0.00 0.00 0.00 3.11
3651 3885 4.908736 TGACTCACTCGCAAAAAGAAAAG 58.091 39.130 0.00 0.00 0.00 2.27
3652 3886 4.955925 TGACTCACTCGCAAAAAGAAAA 57.044 36.364 0.00 0.00 0.00 2.29
3653 3887 4.955925 TTGACTCACTCGCAAAAAGAAA 57.044 36.364 0.00 0.00 0.00 2.52
3654 3888 4.955925 TTTGACTCACTCGCAAAAAGAA 57.044 36.364 0.00 0.00 0.00 2.52
3655 3889 4.955925 TTTTGACTCACTCGCAAAAAGA 57.044 36.364 0.00 0.00 38.22 2.52
3656 3890 5.036737 ACATTTTGACTCACTCGCAAAAAG 58.963 37.500 0.00 0.00 42.56 2.27
3657 3891 4.992688 ACATTTTGACTCACTCGCAAAAA 58.007 34.783 0.00 0.00 42.56 1.94
3658 3892 4.335315 AGACATTTTGACTCACTCGCAAAA 59.665 37.500 0.00 0.00 43.18 2.44
3659 3893 3.876914 AGACATTTTGACTCACTCGCAAA 59.123 39.130 0.00 0.00 0.00 3.68
3660 3894 3.466836 AGACATTTTGACTCACTCGCAA 58.533 40.909 0.00 0.00 0.00 4.85
3661 3895 3.111853 AGACATTTTGACTCACTCGCA 57.888 42.857 0.00 0.00 0.00 5.10
3662 3896 4.447724 TGTAAGACATTTTGACTCACTCGC 59.552 41.667 0.00 0.00 0.00 5.03
3663 3897 6.712241 ATGTAAGACATTTTGACTCACTCG 57.288 37.500 0.00 0.00 34.67 4.18
3665 3899 9.167311 GGATAATGTAAGACATTTTGACTCACT 57.833 33.333 9.92 0.00 45.80 3.41
3666 3900 8.398665 GGGATAATGTAAGACATTTTGACTCAC 58.601 37.037 9.92 0.00 45.80 3.51
3667 3901 7.279981 CGGGATAATGTAAGACATTTTGACTCA 59.720 37.037 9.92 0.00 45.80 3.41
3668 3902 7.630924 CGGGATAATGTAAGACATTTTGACTC 58.369 38.462 9.92 1.74 45.80 3.36
3669 3903 6.038271 GCGGGATAATGTAAGACATTTTGACT 59.962 38.462 9.92 0.00 45.80 3.41
3670 3904 6.183360 TGCGGGATAATGTAAGACATTTTGAC 60.183 38.462 9.92 0.41 45.80 3.18
3671 3905 5.883115 TGCGGGATAATGTAAGACATTTTGA 59.117 36.000 9.92 0.00 45.80 2.69
3672 3906 6.130298 TGCGGGATAATGTAAGACATTTTG 57.870 37.500 9.92 0.00 45.80 2.44
3673 3907 6.767524 TTGCGGGATAATGTAAGACATTTT 57.232 33.333 9.92 2.90 45.80 1.82
3674 3908 6.767524 TTTGCGGGATAATGTAAGACATTT 57.232 33.333 9.92 0.00 45.80 2.32
3676 3910 6.767524 TTTTTGCGGGATAATGTAAGACAT 57.232 33.333 0.00 0.00 41.31 3.06
3699 3933 9.227777 GGTACCTTCACTAATGTAAGACATTTT 57.772 33.333 4.06 0.00 45.80 1.82
3700 3934 8.380099 TGGTACCTTCACTAATGTAAGACATTT 58.620 33.333 14.36 0.00 45.80 2.32
3702 3936 7.180408 ACTGGTACCTTCACTAATGTAAGACAT 59.820 37.037 14.36 0.00 41.31 3.06
3703 3937 6.495872 ACTGGTACCTTCACTAATGTAAGACA 59.504 38.462 14.36 0.00 0.00 3.41
3704 3938 6.932947 ACTGGTACCTTCACTAATGTAAGAC 58.067 40.000 14.36 0.00 0.00 3.01
3705 3939 7.892241 AGTACTGGTACCTTCACTAATGTAAGA 59.108 37.037 14.36 0.00 36.75 2.10
3706 3940 8.064336 AGTACTGGTACCTTCACTAATGTAAG 57.936 38.462 14.36 0.00 36.75 2.34
3707 3941 8.308931 CAAGTACTGGTACCTTCACTAATGTAA 58.691 37.037 14.36 0.00 36.75 2.41
3708 3942 7.093640 CCAAGTACTGGTACCTTCACTAATGTA 60.094 40.741 14.36 0.39 40.78 2.29
3709 3943 6.295688 CCAAGTACTGGTACCTTCACTAATGT 60.296 42.308 14.36 1.25 40.78 2.71
3710 3944 6.106673 CCAAGTACTGGTACCTTCACTAATG 58.893 44.000 14.36 8.73 40.78 1.90
3711 3945 6.295719 CCAAGTACTGGTACCTTCACTAAT 57.704 41.667 14.36 0.00 40.78 1.73
3712 3946 5.733620 CCAAGTACTGGTACCTTCACTAA 57.266 43.478 14.36 0.00 40.78 2.24
3725 3959 1.069227 GCTTCCGTTTGCCAAGTACTG 60.069 52.381 0.00 0.00 0.00 2.74
3726 3960 1.235724 GCTTCCGTTTGCCAAGTACT 58.764 50.000 0.00 0.00 0.00 2.73
3727 3961 0.948678 TGCTTCCGTTTGCCAAGTAC 59.051 50.000 0.00 0.00 0.00 2.73
3728 3962 1.234821 CTGCTTCCGTTTGCCAAGTA 58.765 50.000 0.00 0.00 0.00 2.24
3729 3963 2.032981 CTGCTTCCGTTTGCCAAGT 58.967 52.632 0.00 0.00 0.00 3.16
3730 3964 1.372128 GCTGCTTCCGTTTGCCAAG 60.372 57.895 0.00 0.00 0.00 3.61
3731 3965 2.727544 GCTGCTTCCGTTTGCCAA 59.272 55.556 0.00 0.00 0.00 4.52
3732 3966 3.659092 CGCTGCTTCCGTTTGCCA 61.659 61.111 0.00 0.00 0.00 4.92
3733 3967 4.404654 CCGCTGCTTCCGTTTGCC 62.405 66.667 0.00 0.00 0.00 4.52
3735 3969 1.643868 TATGCCGCTGCTTCCGTTTG 61.644 55.000 0.70 0.00 38.71 2.93
3736 3970 1.369091 CTATGCCGCTGCTTCCGTTT 61.369 55.000 0.70 0.00 38.71 3.60
3737 3971 1.815421 CTATGCCGCTGCTTCCGTT 60.815 57.895 0.70 0.00 38.71 4.44
3738 3972 2.202932 CTATGCCGCTGCTTCCGT 60.203 61.111 0.70 0.00 38.71 4.69
3739 3973 3.643978 GCTATGCCGCTGCTTCCG 61.644 66.667 0.70 0.00 38.71 4.30
3740 3974 3.282920 GGCTATGCCGCTGCTTCC 61.283 66.667 0.70 0.00 39.62 3.46
3750 3984 0.663568 CGGCTACTACGTGGCTATGC 60.664 60.000 0.00 0.00 39.93 3.14
3751 3985 0.039437 CCGGCTACTACGTGGCTATG 60.039 60.000 0.00 0.00 39.93 2.23
3752 3986 1.177256 CCCGGCTACTACGTGGCTAT 61.177 60.000 0.00 0.00 39.93 2.97
3753 3987 1.825191 CCCGGCTACTACGTGGCTA 60.825 63.158 0.00 0.00 39.93 3.93
3754 3988 3.145551 CCCGGCTACTACGTGGCT 61.146 66.667 0.00 0.00 39.93 4.75
3755 3989 4.217159 CCCCGGCTACTACGTGGC 62.217 72.222 0.00 0.00 39.31 5.01
3756 3990 4.217159 GCCCCGGCTACTACGTGG 62.217 72.222 0.00 0.00 38.26 4.94
3757 3991 4.564116 CGCCCCGGCTACTACGTG 62.564 72.222 0.00 0.00 39.32 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.