Multiple sequence alignment - TraesCS6A01G164300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G164300 chr6A 100.000 2835 0 0 1 2835 162276153 162273319 0 5236
1 TraesCS6A01G164300 chr6A 94.087 1708 83 5 703 2398 613366160 613367861 0 2579
2 TraesCS6A01G164300 chr6A 91.340 1224 86 5 711 1920 395871089 395869872 0 1655
3 TraesCS6A01G164300 chr6A 94.792 768 30 4 3 770 613365523 613366280 0 1188
4 TraesCS6A01G164300 chr6A 93.135 772 39 6 3 773 395871731 395870973 0 1120
5 TraesCS6A01G164300 chr6A 97.465 434 11 0 2402 2835 387755429 387754996 0 741
6 TraesCS6A01G164300 chr6A 97.011 435 12 1 2402 2835 529804949 529805383 0 730
7 TraesCS6A01G164300 chr6D 94.230 2409 89 8 3 2398 15118238 15120609 0 3633
8 TraesCS6A01G164300 chr2B 95.449 1714 60 5 703 2398 77333465 77335178 0 2717
9 TraesCS6A01G164300 chr2B 96.480 767 22 2 3 767 77332828 77333591 0 1262
10 TraesCS6A01G164300 chr4D 94.415 1683 71 6 734 2398 386931966 386933643 0 2566
11 TraesCS6A01G164300 chr4D 96.467 736 25 1 3 738 386931329 386932063 0 1214
12 TraesCS6A01G164300 chr7B 93.144 1721 97 6 703 2411 228682868 228681157 0 2505
13 TraesCS6A01G164300 chr7B 92.717 1222 77 4 703 1914 499717172 499715953 0 1753
14 TraesCS6A01G164300 chr3A 95.070 1562 63 4 849 2398 55445528 55447087 0 2446
15 TraesCS6A01G164300 chr3D 94.863 1538 62 4 3 1530 61930579 61932109 0 2386
16 TraesCS6A01G164300 chr3B 92.465 1274 71 10 1139 2398 188482130 188483392 0 1797
17 TraesCS6A01G164300 chr3B 96.180 1047 38 1 1354 2398 766099506 766100552 0 1711
18 TraesCS6A01G164300 chr3B 92.293 1025 60 7 1139 2149 188462172 188463191 0 1437
19 TraesCS6A01G164300 chr1A 94.726 986 36 4 703 1675 565154689 565155671 0 1519
20 TraesCS6A01G164300 chr1A 95.232 797 36 1 1604 2398 8732460 8733256 0 1260
21 TraesCS6A01G164300 chr1A 95.046 767 28 3 3 767 565154051 565154809 0 1197
22 TraesCS6A01G164300 chr1A 97.011 435 12 1 2402 2835 459122666 459123100 0 730
23 TraesCS6A01G164300 chr1A 97.011 435 10 3 2402 2835 110014946 110014514 0 728
24 TraesCS6A01G164300 chr1A 97.005 434 10 3 2401 2832 149768865 149769297 0 726
25 TraesCS6A01G164300 chr5A 92.527 1017 56 5 649 1655 225612041 225613047 0 1439
26 TraesCS6A01G164300 chr5A 93.455 825 42 6 3 826 225611340 225612153 0 1214
27 TraesCS6A01G164300 chr5A 97.018 436 10 3 2402 2835 520402628 520402194 0 730
28 TraesCS6A01G164300 chr6B 93.653 772 35 6 3 773 171789791 171789033 0 1142
29 TraesCS6A01G164300 chr4A 97.235 434 11 1 2402 2835 540874267 540873835 0 734
30 TraesCS6A01G164300 chr4A 97.005 434 11 2 2402 2835 536060249 536059818 0 728
31 TraesCS6A01G164300 chr7A 97.011 435 11 2 2402 2835 608633034 608632601 0 730


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G164300 chr6A 162273319 162276153 2834 True 5236.0 5236 100.0000 1 2835 1 chr6A.!!$R1 2834
1 TraesCS6A01G164300 chr6A 613365523 613367861 2338 False 1883.5 2579 94.4395 3 2398 2 chr6A.!!$F2 2395
2 TraesCS6A01G164300 chr6A 395869872 395871731 1859 True 1387.5 1655 92.2375 3 1920 2 chr6A.!!$R3 1917
3 TraesCS6A01G164300 chr6D 15118238 15120609 2371 False 3633.0 3633 94.2300 3 2398 1 chr6D.!!$F1 2395
4 TraesCS6A01G164300 chr2B 77332828 77335178 2350 False 1989.5 2717 95.9645 3 2398 2 chr2B.!!$F1 2395
5 TraesCS6A01G164300 chr4D 386931329 386933643 2314 False 1890.0 2566 95.4410 3 2398 2 chr4D.!!$F1 2395
6 TraesCS6A01G164300 chr7B 228681157 228682868 1711 True 2505.0 2505 93.1440 703 2411 1 chr7B.!!$R1 1708
7 TraesCS6A01G164300 chr7B 499715953 499717172 1219 True 1753.0 1753 92.7170 703 1914 1 chr7B.!!$R2 1211
8 TraesCS6A01G164300 chr3A 55445528 55447087 1559 False 2446.0 2446 95.0700 849 2398 1 chr3A.!!$F1 1549
9 TraesCS6A01G164300 chr3D 61930579 61932109 1530 False 2386.0 2386 94.8630 3 1530 1 chr3D.!!$F1 1527
10 TraesCS6A01G164300 chr3B 188482130 188483392 1262 False 1797.0 1797 92.4650 1139 2398 1 chr3B.!!$F2 1259
11 TraesCS6A01G164300 chr3B 766099506 766100552 1046 False 1711.0 1711 96.1800 1354 2398 1 chr3B.!!$F3 1044
12 TraesCS6A01G164300 chr3B 188462172 188463191 1019 False 1437.0 1437 92.2930 1139 2149 1 chr3B.!!$F1 1010
13 TraesCS6A01G164300 chr1A 565154051 565155671 1620 False 1358.0 1519 94.8860 3 1675 2 chr1A.!!$F4 1672
14 TraesCS6A01G164300 chr1A 8732460 8733256 796 False 1260.0 1260 95.2320 1604 2398 1 chr1A.!!$F1 794
15 TraesCS6A01G164300 chr5A 225611340 225613047 1707 False 1326.5 1439 92.9910 3 1655 2 chr5A.!!$F1 1652
16 TraesCS6A01G164300 chr6B 171789033 171789791 758 True 1142.0 1142 93.6530 3 773 1 chr6B.!!$R1 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
654 659 0.106708 ATATGTAGCTGTGGCGGTGG 59.893 55.0 0.0 0.0 44.37 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2516 2772 1.348036 GAGGGTACAGAAGGTTGTGCT 59.652 52.381 0.0 0.0 34.58 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 129 1.186200 CTCCATTCAGGTCCACTCGA 58.814 55.000 0.00 0.00 39.02 4.04
272 277 1.017387 GGCTATCTTGCGTTCCCAAG 58.983 55.000 0.00 0.00 42.73 3.61
295 300 6.430007 AGCCTTCTTTGACATAAAGGATCAT 58.570 36.000 12.74 0.00 40.63 2.45
461 466 6.795144 TGGATGATTTGTTATTGCCTGAAT 57.205 33.333 0.00 0.00 0.00 2.57
498 503 0.659427 AATGCGCCAACTGATGATCG 59.341 50.000 4.18 0.00 0.00 3.69
561 566 1.600023 TGGTCCAACTTTAGGCAACG 58.400 50.000 0.00 0.00 46.39 4.10
577 582 4.767409 AGGCAACGACTAGCTGATGATATA 59.233 41.667 0.00 0.00 46.39 0.86
647 652 7.122501 AGGATGAGAGTATGATATGTAGCTGTG 59.877 40.741 0.00 0.00 0.00 3.66
648 653 6.581171 TGAGAGTATGATATGTAGCTGTGG 57.419 41.667 0.00 0.00 0.00 4.17
649 654 5.047731 TGAGAGTATGATATGTAGCTGTGGC 60.048 44.000 0.00 0.00 39.06 5.01
650 655 4.082517 AGAGTATGATATGTAGCTGTGGCG 60.083 45.833 0.00 0.00 44.37 5.69
651 656 2.462456 ATGATATGTAGCTGTGGCGG 57.538 50.000 0.00 0.00 44.37 6.13
652 657 1.119684 TGATATGTAGCTGTGGCGGT 58.880 50.000 0.00 0.00 44.37 5.68
653 658 1.202521 TGATATGTAGCTGTGGCGGTG 60.203 52.381 0.00 0.00 44.37 4.94
654 659 0.106708 ATATGTAGCTGTGGCGGTGG 59.893 55.000 0.00 0.00 44.37 4.61
655 660 1.261938 TATGTAGCTGTGGCGGTGGT 61.262 55.000 0.00 0.00 44.37 4.16
656 661 2.434359 GTAGCTGTGGCGGTGGTC 60.434 66.667 0.00 0.00 44.37 4.02
657 662 2.603473 TAGCTGTGGCGGTGGTCT 60.603 61.111 0.00 0.00 44.37 3.85
658 663 2.214216 TAGCTGTGGCGGTGGTCTT 61.214 57.895 0.00 0.00 44.37 3.01
659 664 2.167398 TAGCTGTGGCGGTGGTCTTC 62.167 60.000 0.00 0.00 44.37 2.87
660 665 2.743718 CTGTGGCGGTGGTCTTCT 59.256 61.111 0.00 0.00 0.00 2.85
661 666 1.071471 CTGTGGCGGTGGTCTTCTT 59.929 57.895 0.00 0.00 0.00 2.52
662 667 0.535102 CTGTGGCGGTGGTCTTCTTT 60.535 55.000 0.00 0.00 0.00 2.52
663 668 0.106918 TGTGGCGGTGGTCTTCTTTT 60.107 50.000 0.00 0.00 0.00 2.27
664 669 0.310854 GTGGCGGTGGTCTTCTTTTG 59.689 55.000 0.00 0.00 0.00 2.44
665 670 0.106918 TGGCGGTGGTCTTCTTTTGT 60.107 50.000 0.00 0.00 0.00 2.83
666 671 1.141254 TGGCGGTGGTCTTCTTTTGTA 59.859 47.619 0.00 0.00 0.00 2.41
667 672 2.224670 TGGCGGTGGTCTTCTTTTGTAT 60.225 45.455 0.00 0.00 0.00 2.29
668 673 3.008157 TGGCGGTGGTCTTCTTTTGTATA 59.992 43.478 0.00 0.00 0.00 1.47
669 674 3.621715 GGCGGTGGTCTTCTTTTGTATAG 59.378 47.826 0.00 0.00 0.00 1.31
670 675 3.063588 GCGGTGGTCTTCTTTTGTATAGC 59.936 47.826 0.00 0.00 0.00 2.97
671 676 4.504858 CGGTGGTCTTCTTTTGTATAGCT 58.495 43.478 0.00 0.00 0.00 3.32
1003 1242 2.850695 AGTAGGTACAAGGAGGAGGG 57.149 55.000 0.00 0.00 0.00 4.30
1158 1397 5.050091 GGACAAGTGCAATAAGGATATCACG 60.050 44.000 4.83 0.00 0.00 4.35
1244 1483 3.478857 TTCTCAAAGTGGTTTCGGCTA 57.521 42.857 0.00 0.00 0.00 3.93
1257 1496 0.539986 TCGGCTAGGATTGGACCAAC 59.460 55.000 9.67 3.70 0.00 3.77
1264 1503 4.141482 GCTAGGATTGGACCAACAATAGGA 60.141 45.833 9.67 0.00 40.92 2.94
1447 1700 5.892348 ACCAAAGTAATCAAGAACTGGGAT 58.108 37.500 0.00 0.00 0.00 3.85
1510 1763 0.671781 GTGCGAAGACAGGTGCTGAT 60.672 55.000 0.00 0.00 35.18 2.90
1518 1771 2.238144 AGACAGGTGCTGATATTGCTGT 59.762 45.455 0.00 0.00 35.18 4.40
1559 1812 6.043243 ACCAATTGAAGTCTCTCCAGAAGTAA 59.957 38.462 7.12 0.00 0.00 2.24
1636 1889 5.248380 AGAGGGACTTAGTTGATGCTTTT 57.752 39.130 0.00 0.00 41.55 2.27
1856 2110 6.048509 TGAAGATCGATGCTTTTATGTGCTA 58.951 36.000 0.54 0.00 0.00 3.49
1944 2198 9.865321 GTTGAACTTGGAACTATGTATGTACTA 57.135 33.333 0.00 0.00 0.00 1.82
2037 2291 8.093307 AGACCATATTTGAGACTACATGCTATG 58.907 37.037 0.00 0.00 0.00 2.23
2123 2377 3.940209 TGTGTTTCCTGATGCATTTCC 57.060 42.857 0.00 0.00 0.00 3.13
2201 2457 8.362464 TGAGTGATGTAGAACAAGGTATAACT 57.638 34.615 0.00 0.00 0.00 2.24
2291 2547 1.876497 TTCAAGGGCCAATTCGCTGC 61.876 55.000 6.18 0.00 0.00 5.25
2353 2609 6.723052 AGTTTCCTCACTGATTTGGAATTCAT 59.277 34.615 7.93 0.00 38.24 2.57
2400 2656 3.040147 GGAGACATCCAAACGAAGTGA 57.960 47.619 0.00 0.00 43.59 3.41
2403 2659 4.806247 GGAGACATCCAAACGAAGTGATAG 59.194 45.833 0.00 0.00 43.59 2.08
2408 2664 6.460781 ACATCCAAACGAAGTGATAGTGTTA 58.539 36.000 0.00 0.00 45.00 2.41
2411 2667 7.591006 TCCAAACGAAGTGATAGTGTTATTC 57.409 36.000 0.00 0.00 45.00 1.75
2412 2668 6.309494 TCCAAACGAAGTGATAGTGTTATTCG 59.691 38.462 3.82 3.82 45.00 3.34
2413 2669 6.309494 CCAAACGAAGTGATAGTGTTATTCGA 59.691 38.462 11.56 0.00 45.00 3.71
2414 2670 7.148705 CCAAACGAAGTGATAGTGTTATTCGAA 60.149 37.037 11.56 0.00 45.00 3.71
2415 2671 7.878477 AACGAAGTGATAGTGTTATTCGAAA 57.122 32.000 0.00 0.00 45.00 3.46
2416 2672 8.475331 AACGAAGTGATAGTGTTATTCGAAAT 57.525 30.769 0.00 0.00 45.00 2.17
2417 2673 8.475331 ACGAAGTGATAGTGTTATTCGAAATT 57.525 30.769 0.00 0.00 42.51 1.82
2418 2674 8.932791 ACGAAGTGATAGTGTTATTCGAAATTT 58.067 29.630 0.00 0.00 42.51 1.82
2419 2675 9.409949 CGAAGTGATAGTGTTATTCGAAATTTC 57.590 33.333 8.20 8.20 41.37 2.17
2422 2678 9.877178 AGTGATAGTGTTATTCGAAATTTCTCT 57.123 29.630 15.92 3.42 0.00 3.10
2423 2679 9.907576 GTGATAGTGTTATTCGAAATTTCTCTG 57.092 33.333 15.92 1.21 0.00 3.35
2424 2680 9.098355 TGATAGTGTTATTCGAAATTTCTCTGG 57.902 33.333 15.92 0.86 0.00 3.86
2425 2681 9.099454 GATAGTGTTATTCGAAATTTCTCTGGT 57.901 33.333 15.92 1.12 0.00 4.00
2426 2682 7.745620 AGTGTTATTCGAAATTTCTCTGGTT 57.254 32.000 15.92 0.00 0.00 3.67
2427 2683 8.166422 AGTGTTATTCGAAATTTCTCTGGTTT 57.834 30.769 15.92 0.00 0.00 3.27
2428 2684 8.290325 AGTGTTATTCGAAATTTCTCTGGTTTC 58.710 33.333 15.92 2.29 0.00 2.78
2429 2685 8.073768 GTGTTATTCGAAATTTCTCTGGTTTCA 58.926 33.333 15.92 3.86 32.75 2.69
2430 2686 8.792633 TGTTATTCGAAATTTCTCTGGTTTCAT 58.207 29.630 15.92 0.00 32.75 2.57
2431 2687 9.065871 GTTATTCGAAATTTCTCTGGTTTCATG 57.934 33.333 15.92 0.00 32.75 3.07
2432 2688 6.633500 TTCGAAATTTCTCTGGTTTCATGT 57.367 33.333 15.92 0.00 32.75 3.21
2433 2689 6.633500 TCGAAATTTCTCTGGTTTCATGTT 57.367 33.333 15.92 0.00 32.75 2.71
2434 2690 7.737972 TCGAAATTTCTCTGGTTTCATGTTA 57.262 32.000 15.92 0.00 32.75 2.41
2435 2691 8.160521 TCGAAATTTCTCTGGTTTCATGTTAA 57.839 30.769 15.92 0.00 32.75 2.01
2436 2692 8.792633 TCGAAATTTCTCTGGTTTCATGTTAAT 58.207 29.630 15.92 0.00 32.75 1.40
2437 2693 9.065871 CGAAATTTCTCTGGTTTCATGTTAATC 57.934 33.333 15.92 0.00 32.75 1.75
2438 2694 8.970691 AAATTTCTCTGGTTTCATGTTAATCG 57.029 30.769 0.00 0.00 0.00 3.34
2439 2695 6.494893 TTTCTCTGGTTTCATGTTAATCGG 57.505 37.500 0.00 0.00 0.00 4.18
2440 2696 5.414789 TCTCTGGTTTCATGTTAATCGGA 57.585 39.130 0.00 0.00 0.00 4.55
2441 2697 5.800296 TCTCTGGTTTCATGTTAATCGGAA 58.200 37.500 0.00 0.00 0.00 4.30
2442 2698 6.414732 TCTCTGGTTTCATGTTAATCGGAAT 58.585 36.000 0.00 0.00 0.00 3.01
2443 2699 6.316140 TCTCTGGTTTCATGTTAATCGGAATG 59.684 38.462 0.00 0.00 0.00 2.67
2444 2700 6.176896 TCTGGTTTCATGTTAATCGGAATGA 58.823 36.000 0.00 0.00 0.00 2.57
2445 2701 6.316140 TCTGGTTTCATGTTAATCGGAATGAG 59.684 38.462 0.00 0.00 31.11 2.90
2446 2702 5.943416 TGGTTTCATGTTAATCGGAATGAGT 59.057 36.000 0.00 0.00 31.11 3.41
2447 2703 6.432783 TGGTTTCATGTTAATCGGAATGAGTT 59.567 34.615 0.00 0.00 31.11 3.01
2448 2704 7.040062 TGGTTTCATGTTAATCGGAATGAGTTT 60.040 33.333 0.00 0.00 31.11 2.66
2449 2705 7.273381 GGTTTCATGTTAATCGGAATGAGTTTG 59.727 37.037 0.00 0.00 31.11 2.93
2450 2706 7.447374 TTCATGTTAATCGGAATGAGTTTGT 57.553 32.000 0.00 0.00 31.11 2.83
2451 2707 7.447374 TCATGTTAATCGGAATGAGTTTGTT 57.553 32.000 0.00 0.00 0.00 2.83
2452 2708 8.554835 TCATGTTAATCGGAATGAGTTTGTTA 57.445 30.769 0.00 0.00 0.00 2.41
2453 2709 9.004717 TCATGTTAATCGGAATGAGTTTGTTAA 57.995 29.630 0.00 0.00 0.00 2.01
2454 2710 9.061610 CATGTTAATCGGAATGAGTTTGTTAAC 57.938 33.333 0.00 0.00 33.62 2.01
2455 2711 8.155821 TGTTAATCGGAATGAGTTTGTTAACA 57.844 30.769 3.59 3.59 38.02 2.41
2456 2712 8.622157 TGTTAATCGGAATGAGTTTGTTAACAA 58.378 29.630 17.01 17.01 37.65 2.83
2457 2713 9.113876 GTTAATCGGAATGAGTTTGTTAACAAG 57.886 33.333 19.72 6.62 37.15 3.16
2458 2714 7.504924 AATCGGAATGAGTTTGTTAACAAGA 57.495 32.000 19.72 11.37 37.15 3.02
2459 2715 6.295039 TCGGAATGAGTTTGTTAACAAGAC 57.705 37.500 19.72 18.81 37.15 3.01
2460 2716 6.053005 TCGGAATGAGTTTGTTAACAAGACT 58.947 36.000 23.94 23.94 37.15 3.24
2461 2717 6.540914 TCGGAATGAGTTTGTTAACAAGACTT 59.459 34.615 24.25 15.51 37.15 3.01
2462 2718 6.632834 CGGAATGAGTTTGTTAACAAGACTTG 59.367 38.462 24.25 13.77 37.15 3.16
2463 2719 7.466725 CGGAATGAGTTTGTTAACAAGACTTGA 60.467 37.037 21.95 18.27 37.15 3.02
2464 2720 8.352942 GGAATGAGTTTGTTAACAAGACTTGAT 58.647 33.333 21.95 12.58 37.15 2.57
2465 2721 9.387123 GAATGAGTTTGTTAACAAGACTTGATC 57.613 33.333 21.95 19.79 37.15 2.92
2466 2722 7.857734 TGAGTTTGTTAACAAGACTTGATCA 57.142 32.000 21.95 18.48 37.15 2.92
2467 2723 8.275015 TGAGTTTGTTAACAAGACTTGATCAA 57.725 30.769 21.95 8.12 37.15 2.57
2468 2724 8.181573 TGAGTTTGTTAACAAGACTTGATCAAC 58.818 33.333 21.95 18.85 37.15 3.18
2469 2725 7.480810 AGTTTGTTAACAAGACTTGATCAACC 58.519 34.615 21.95 12.03 37.15 3.77
2470 2726 7.339466 AGTTTGTTAACAAGACTTGATCAACCT 59.661 33.333 21.95 13.69 37.15 3.50
2471 2727 7.639113 TTGTTAACAAGACTTGATCAACCTT 57.361 32.000 21.95 8.14 0.00 3.50
2472 2728 7.026631 TGTTAACAAGACTTGATCAACCTTG 57.973 36.000 27.60 27.60 39.84 3.61
2473 2729 6.601613 TGTTAACAAGACTTGATCAACCTTGT 59.398 34.615 28.46 28.46 46.31 3.16
2476 2732 6.867662 ACAAGACTTGATCAACCTTGTTAG 57.132 37.500 28.46 12.99 43.14 2.34
2477 2733 6.357367 ACAAGACTTGATCAACCTTGTTAGT 58.643 36.000 28.46 15.46 43.14 2.24
2478 2734 6.260936 ACAAGACTTGATCAACCTTGTTAGTG 59.739 38.462 28.46 16.73 43.14 2.74
2479 2735 5.308825 AGACTTGATCAACCTTGTTAGTGG 58.691 41.667 3.38 0.00 0.00 4.00
2480 2736 5.071788 AGACTTGATCAACCTTGTTAGTGGA 59.928 40.000 3.38 0.00 0.00 4.02
2481 2737 5.880901 ACTTGATCAACCTTGTTAGTGGAT 58.119 37.500 3.38 0.00 0.00 3.41
2482 2738 6.306987 ACTTGATCAACCTTGTTAGTGGATT 58.693 36.000 3.38 0.00 0.00 3.01
2483 2739 6.431234 ACTTGATCAACCTTGTTAGTGGATTC 59.569 38.462 3.38 0.00 0.00 2.52
2484 2740 5.253330 TGATCAACCTTGTTAGTGGATTCC 58.747 41.667 0.00 0.00 0.00 3.01
2485 2741 4.993705 TCAACCTTGTTAGTGGATTCCT 57.006 40.909 3.95 0.00 0.00 3.36
2486 2742 5.319043 TCAACCTTGTTAGTGGATTCCTT 57.681 39.130 3.95 0.00 0.00 3.36
2487 2743 5.701224 TCAACCTTGTTAGTGGATTCCTTT 58.299 37.500 3.95 0.00 0.00 3.11
2488 2744 6.133356 TCAACCTTGTTAGTGGATTCCTTTT 58.867 36.000 3.95 0.00 0.00 2.27
2489 2745 6.040391 TCAACCTTGTTAGTGGATTCCTTTTG 59.960 38.462 3.95 0.00 0.00 2.44
2490 2746 5.701224 ACCTTGTTAGTGGATTCCTTTTGA 58.299 37.500 3.95 0.00 0.00 2.69
2491 2747 6.314917 ACCTTGTTAGTGGATTCCTTTTGAT 58.685 36.000 3.95 0.00 0.00 2.57
2492 2748 6.209391 ACCTTGTTAGTGGATTCCTTTTGATG 59.791 38.462 3.95 0.00 0.00 3.07
2493 2749 6.434028 CCTTGTTAGTGGATTCCTTTTGATGA 59.566 38.462 3.95 0.00 0.00 2.92
2494 2750 7.362401 CCTTGTTAGTGGATTCCTTTTGATGAG 60.362 40.741 3.95 0.00 0.00 2.90
2495 2751 5.415701 TGTTAGTGGATTCCTTTTGATGAGC 59.584 40.000 3.95 0.00 0.00 4.26
2496 2752 4.038271 AGTGGATTCCTTTTGATGAGCA 57.962 40.909 3.95 0.00 0.00 4.26
2497 2753 4.607239 AGTGGATTCCTTTTGATGAGCAT 58.393 39.130 3.95 0.00 0.00 3.79
2498 2754 4.401519 AGTGGATTCCTTTTGATGAGCATG 59.598 41.667 3.95 0.00 0.00 4.06
2499 2755 4.400251 GTGGATTCCTTTTGATGAGCATGA 59.600 41.667 3.95 0.00 0.00 3.07
2500 2756 4.643334 TGGATTCCTTTTGATGAGCATGAG 59.357 41.667 3.95 0.00 0.00 2.90
2501 2757 4.885907 GGATTCCTTTTGATGAGCATGAGA 59.114 41.667 0.00 0.00 0.00 3.27
2502 2758 5.535406 GGATTCCTTTTGATGAGCATGAGAT 59.465 40.000 0.00 0.00 0.00 2.75
2503 2759 5.830000 TTCCTTTTGATGAGCATGAGATG 57.170 39.130 0.00 0.00 0.00 2.90
2504 2760 4.204799 TCCTTTTGATGAGCATGAGATGG 58.795 43.478 0.00 0.00 0.00 3.51
2505 2761 4.080186 TCCTTTTGATGAGCATGAGATGGA 60.080 41.667 0.00 0.00 0.00 3.41
2506 2762 4.827835 CCTTTTGATGAGCATGAGATGGAT 59.172 41.667 0.00 0.00 0.00 3.41
2507 2763 5.278512 CCTTTTGATGAGCATGAGATGGATG 60.279 44.000 0.00 0.00 0.00 3.51
2508 2764 4.699925 TTGATGAGCATGAGATGGATGA 57.300 40.909 0.00 0.00 0.00 2.92
2509 2765 4.699925 TGATGAGCATGAGATGGATGAA 57.300 40.909 0.00 0.00 0.00 2.57
2510 2766 5.043737 TGATGAGCATGAGATGGATGAAA 57.956 39.130 0.00 0.00 0.00 2.69
2511 2767 4.820173 TGATGAGCATGAGATGGATGAAAC 59.180 41.667 0.00 0.00 0.00 2.78
2512 2768 4.498894 TGAGCATGAGATGGATGAAACT 57.501 40.909 0.00 0.00 0.00 2.66
2513 2769 5.619132 TGAGCATGAGATGGATGAAACTA 57.381 39.130 0.00 0.00 0.00 2.24
2514 2770 5.608449 TGAGCATGAGATGGATGAAACTAG 58.392 41.667 0.00 0.00 0.00 2.57
2515 2771 5.364735 TGAGCATGAGATGGATGAAACTAGA 59.635 40.000 0.00 0.00 0.00 2.43
2516 2772 6.126968 TGAGCATGAGATGGATGAAACTAGAA 60.127 38.462 0.00 0.00 0.00 2.10
2517 2773 6.289834 AGCATGAGATGGATGAAACTAGAAG 58.710 40.000 0.00 0.00 0.00 2.85
2518 2774 5.049543 GCATGAGATGGATGAAACTAGAAGC 60.050 44.000 0.00 0.00 0.00 3.86
2519 2775 5.682234 TGAGATGGATGAAACTAGAAGCA 57.318 39.130 0.00 0.00 0.00 3.91
2520 2776 5.423015 TGAGATGGATGAAACTAGAAGCAC 58.577 41.667 0.00 0.00 0.00 4.40
2521 2777 5.046376 TGAGATGGATGAAACTAGAAGCACA 60.046 40.000 0.00 0.00 0.00 4.57
2522 2778 5.809001 AGATGGATGAAACTAGAAGCACAA 58.191 37.500 0.00 0.00 0.00 3.33
2523 2779 5.645497 AGATGGATGAAACTAGAAGCACAAC 59.355 40.000 0.00 0.00 0.00 3.32
2524 2780 4.072131 TGGATGAAACTAGAAGCACAACC 58.928 43.478 0.00 0.00 0.00 3.77
2525 2781 4.202461 TGGATGAAACTAGAAGCACAACCT 60.202 41.667 0.00 0.00 0.00 3.50
2526 2782 4.762251 GGATGAAACTAGAAGCACAACCTT 59.238 41.667 0.00 0.00 0.00 3.50
2527 2783 5.106515 GGATGAAACTAGAAGCACAACCTTC 60.107 44.000 0.00 0.00 41.15 3.46
2534 2790 2.152016 GAAGCACAACCTTCTGTACCC 58.848 52.381 0.00 0.00 38.50 3.69
2535 2791 1.435256 AGCACAACCTTCTGTACCCT 58.565 50.000 0.00 0.00 0.00 4.34
2536 2792 1.348036 AGCACAACCTTCTGTACCCTC 59.652 52.381 0.00 0.00 0.00 4.30
2537 2793 1.348036 GCACAACCTTCTGTACCCTCT 59.652 52.381 0.00 0.00 0.00 3.69
2538 2794 2.613223 GCACAACCTTCTGTACCCTCTC 60.613 54.545 0.00 0.00 0.00 3.20
2539 2795 2.900546 CACAACCTTCTGTACCCTCTCT 59.099 50.000 0.00 0.00 0.00 3.10
2540 2796 4.087182 CACAACCTTCTGTACCCTCTCTA 58.913 47.826 0.00 0.00 0.00 2.43
2541 2797 4.712337 CACAACCTTCTGTACCCTCTCTAT 59.288 45.833 0.00 0.00 0.00 1.98
2542 2798 5.892119 CACAACCTTCTGTACCCTCTCTATA 59.108 44.000 0.00 0.00 0.00 1.31
2543 2799 5.892686 ACAACCTTCTGTACCCTCTCTATAC 59.107 44.000 0.00 0.00 0.00 1.47
2544 2800 5.998128 ACCTTCTGTACCCTCTCTATACT 57.002 43.478 0.00 0.00 0.00 2.12
2545 2801 6.344232 ACCTTCTGTACCCTCTCTATACTT 57.656 41.667 0.00 0.00 0.00 2.24
2546 2802 6.743788 ACCTTCTGTACCCTCTCTATACTTT 58.256 40.000 0.00 0.00 0.00 2.66
2547 2803 6.834969 ACCTTCTGTACCCTCTCTATACTTTC 59.165 42.308 0.00 0.00 0.00 2.62
2548 2804 7.064229 CCTTCTGTACCCTCTCTATACTTTCT 58.936 42.308 0.00 0.00 0.00 2.52
2549 2805 7.013846 CCTTCTGTACCCTCTCTATACTTTCTG 59.986 44.444 0.00 0.00 0.00 3.02
2550 2806 6.971340 TCTGTACCCTCTCTATACTTTCTGT 58.029 40.000 0.00 0.00 0.00 3.41
2551 2807 7.411808 TCTGTACCCTCTCTATACTTTCTGTT 58.588 38.462 0.00 0.00 0.00 3.16
2552 2808 8.554870 TCTGTACCCTCTCTATACTTTCTGTTA 58.445 37.037 0.00 0.00 0.00 2.41
2553 2809 9.357161 CTGTACCCTCTCTATACTTTCTGTTAT 57.643 37.037 0.00 0.00 0.00 1.89
2554 2810 9.710818 TGTACCCTCTCTATACTTTCTGTTATT 57.289 33.333 0.00 0.00 0.00 1.40
2609 2865 9.591792 TTTCTGTCTGTTATCTGATTATCTGTG 57.408 33.333 0.00 0.00 0.00 3.66
2610 2866 7.205992 TCTGTCTGTTATCTGATTATCTGTGC 58.794 38.462 0.00 0.00 0.00 4.57
2611 2867 6.877236 TGTCTGTTATCTGATTATCTGTGCA 58.123 36.000 0.00 0.00 0.00 4.57
2612 2868 7.330262 TGTCTGTTATCTGATTATCTGTGCAA 58.670 34.615 0.00 0.00 0.00 4.08
2613 2869 7.989170 TGTCTGTTATCTGATTATCTGTGCAAT 59.011 33.333 0.00 0.00 0.00 3.56
2614 2870 9.481340 GTCTGTTATCTGATTATCTGTGCAATA 57.519 33.333 0.00 0.00 0.00 1.90
2628 2884 8.902540 ATCTGTGCAATATAAAAATACCTCGA 57.097 30.769 0.00 0.00 0.00 4.04
2629 2885 8.725405 TCTGTGCAATATAAAAATACCTCGAA 57.275 30.769 0.00 0.00 0.00 3.71
2630 2886 9.168451 TCTGTGCAATATAAAAATACCTCGAAA 57.832 29.630 0.00 0.00 0.00 3.46
2631 2887 9.781834 CTGTGCAATATAAAAATACCTCGAAAA 57.218 29.630 0.00 0.00 0.00 2.29
2644 2900 8.857694 AATACCTCGAAAATAAAAGTTCTCCA 57.142 30.769 0.00 0.00 0.00 3.86
2645 2901 8.857694 ATACCTCGAAAATAAAAGTTCTCCAA 57.142 30.769 0.00 0.00 0.00 3.53
2646 2902 7.576861 ACCTCGAAAATAAAAGTTCTCCAAA 57.423 32.000 0.00 0.00 0.00 3.28
2647 2903 8.178313 ACCTCGAAAATAAAAGTTCTCCAAAT 57.822 30.769 0.00 0.00 0.00 2.32
2648 2904 8.082242 ACCTCGAAAATAAAAGTTCTCCAAATG 58.918 33.333 0.00 0.00 0.00 2.32
2649 2905 7.062255 CCTCGAAAATAAAAGTTCTCCAAATGC 59.938 37.037 0.00 0.00 0.00 3.56
2650 2906 6.866248 TCGAAAATAAAAGTTCTCCAAATGCC 59.134 34.615 0.00 0.00 0.00 4.40
2651 2907 6.090763 CGAAAATAAAAGTTCTCCAAATGCCC 59.909 38.462 0.00 0.00 0.00 5.36
2652 2908 6.686484 AAATAAAAGTTCTCCAAATGCCCT 57.314 33.333 0.00 0.00 0.00 5.19
2653 2909 5.665916 ATAAAAGTTCTCCAAATGCCCTG 57.334 39.130 0.00 0.00 0.00 4.45
2654 2910 2.978156 AAGTTCTCCAAATGCCCTGA 57.022 45.000 0.00 0.00 0.00 3.86
2655 2911 2.978156 AGTTCTCCAAATGCCCTGAA 57.022 45.000 0.00 0.00 0.00 3.02
2656 2912 3.243359 AGTTCTCCAAATGCCCTGAAA 57.757 42.857 0.00 0.00 0.00 2.69
2657 2913 3.575805 AGTTCTCCAAATGCCCTGAAAA 58.424 40.909 0.00 0.00 0.00 2.29
2658 2914 4.162651 AGTTCTCCAAATGCCCTGAAAAT 58.837 39.130 0.00 0.00 0.00 1.82
2659 2915 4.594491 AGTTCTCCAAATGCCCTGAAAATT 59.406 37.500 0.00 0.00 0.00 1.82
2660 2916 5.779771 AGTTCTCCAAATGCCCTGAAAATTA 59.220 36.000 0.00 0.00 0.00 1.40
2661 2917 6.269769 AGTTCTCCAAATGCCCTGAAAATTAA 59.730 34.615 0.00 0.00 0.00 1.40
2662 2918 6.678568 TCTCCAAATGCCCTGAAAATTAAA 57.321 33.333 0.00 0.00 0.00 1.52
2663 2919 7.256494 TCTCCAAATGCCCTGAAAATTAAAT 57.744 32.000 0.00 0.00 0.00 1.40
2664 2920 8.372877 TCTCCAAATGCCCTGAAAATTAAATA 57.627 30.769 0.00 0.00 0.00 1.40
2665 2921 8.991275 TCTCCAAATGCCCTGAAAATTAAATAT 58.009 29.630 0.00 0.00 0.00 1.28
2666 2922 8.961294 TCCAAATGCCCTGAAAATTAAATATG 57.039 30.769 0.00 0.00 0.00 1.78
2667 2923 8.766476 TCCAAATGCCCTGAAAATTAAATATGA 58.234 29.630 0.00 0.00 0.00 2.15
2668 2924 9.563748 CCAAATGCCCTGAAAATTAAATATGAT 57.436 29.630 0.00 0.00 0.00 2.45
2714 2970 2.374184 TGGAACAAAGAACACACCAGG 58.626 47.619 0.00 0.00 31.92 4.45
2715 2971 1.681264 GGAACAAAGAACACACCAGGG 59.319 52.381 0.00 0.00 0.00 4.45
2716 2972 1.681264 GAACAAAGAACACACCAGGGG 59.319 52.381 0.00 0.00 0.00 4.79
2717 2973 0.106217 ACAAAGAACACACCAGGGGG 60.106 55.000 0.00 0.00 41.29 5.40
2718 2974 1.152546 AAAGAACACACCAGGGGGC 60.153 57.895 0.00 0.00 37.90 5.80
2719 2975 2.656698 AAAGAACACACCAGGGGGCC 62.657 60.000 0.00 0.00 37.90 5.80
2720 2976 3.897122 GAACACACCAGGGGGCCA 61.897 66.667 4.39 0.00 37.90 5.36
2721 2977 3.434179 AACACACCAGGGGGCCAA 61.434 61.111 4.39 0.00 37.90 4.52
2722 2978 3.749284 AACACACCAGGGGGCCAAC 62.749 63.158 4.39 0.00 37.90 3.77
2723 2979 4.994756 CACACCAGGGGGCCAACC 62.995 72.222 4.39 6.29 37.90 3.77
2725 2981 4.994756 CACCAGGGGGCCAACCAC 62.995 72.222 17.07 0.00 45.96 4.16
2732 2988 4.932105 GGGCCAACCACCTTGCCA 62.932 66.667 4.39 0.00 39.85 4.92
2733 2989 3.615709 GGCCAACCACCTTGCCAC 61.616 66.667 0.00 0.00 35.26 5.01
2734 2990 3.977244 GCCAACCACCTTGCCACG 61.977 66.667 0.00 0.00 0.00 4.94
2735 2991 2.203280 CCAACCACCTTGCCACGA 60.203 61.111 0.00 0.00 0.00 4.35
2736 2992 2.260869 CCAACCACCTTGCCACGAG 61.261 63.158 0.00 0.00 0.00 4.18
2737 2993 2.113139 AACCACCTTGCCACGAGG 59.887 61.111 0.00 0.00 40.24 4.63
2738 2994 3.491598 AACCACCTTGCCACGAGGG 62.492 63.158 0.00 0.00 38.65 4.30
2739 2995 3.953775 CCACCTTGCCACGAGGGT 61.954 66.667 0.00 0.00 38.65 4.34
2740 2996 2.669569 CACCTTGCCACGAGGGTG 60.670 66.667 0.00 0.00 43.99 4.61
2793 3049 4.802051 CCTCGTGGGCCCATGGTG 62.802 72.222 38.09 29.66 33.99 4.17
2794 3050 4.802051 CTCGTGGGCCCATGGTGG 62.802 72.222 38.09 25.40 37.25 4.61
2802 3058 3.813724 CCCATGGTGGCCCTCCTC 61.814 72.222 11.73 0.00 35.79 3.71
2803 3059 3.813724 CCATGGTGGCCCTCCTCC 61.814 72.222 2.57 3.87 44.43 4.30
2810 3066 3.435682 TGGCCCTCCTCCACTTATT 57.564 52.632 0.00 0.00 0.00 1.40
2811 3067 1.213296 TGGCCCTCCTCCACTTATTC 58.787 55.000 0.00 0.00 0.00 1.75
2812 3068 1.213296 GGCCCTCCTCCACTTATTCA 58.787 55.000 0.00 0.00 0.00 2.57
2813 3069 1.777272 GGCCCTCCTCCACTTATTCAT 59.223 52.381 0.00 0.00 0.00 2.57
2814 3070 2.487986 GGCCCTCCTCCACTTATTCATG 60.488 54.545 0.00 0.00 0.00 3.07
2815 3071 2.856222 CCCTCCTCCACTTATTCATGC 58.144 52.381 0.00 0.00 0.00 4.06
2816 3072 2.173356 CCCTCCTCCACTTATTCATGCA 59.827 50.000 0.00 0.00 0.00 3.96
2817 3073 3.209410 CCTCCTCCACTTATTCATGCAC 58.791 50.000 0.00 0.00 0.00 4.57
2818 3074 3.209410 CTCCTCCACTTATTCATGCACC 58.791 50.000 0.00 0.00 0.00 5.01
2819 3075 2.092429 TCCTCCACTTATTCATGCACCC 60.092 50.000 0.00 0.00 0.00 4.61
2820 3076 2.357050 CCTCCACTTATTCATGCACCCA 60.357 50.000 0.00 0.00 0.00 4.51
2821 3077 3.559069 CTCCACTTATTCATGCACCCAT 58.441 45.455 0.00 0.00 0.00 4.00
2822 3078 3.554934 TCCACTTATTCATGCACCCATC 58.445 45.455 0.00 0.00 0.00 3.51
2823 3079 3.202818 TCCACTTATTCATGCACCCATCT 59.797 43.478 0.00 0.00 0.00 2.90
2824 3080 3.956199 CCACTTATTCATGCACCCATCTT 59.044 43.478 0.00 0.00 0.00 2.40
2825 3081 4.037208 CCACTTATTCATGCACCCATCTTC 59.963 45.833 0.00 0.00 0.00 2.87
2826 3082 4.885907 CACTTATTCATGCACCCATCTTCT 59.114 41.667 0.00 0.00 0.00 2.85
2827 3083 5.359009 CACTTATTCATGCACCCATCTTCTT 59.641 40.000 0.00 0.00 0.00 2.52
2828 3084 5.591877 ACTTATTCATGCACCCATCTTCTTC 59.408 40.000 0.00 0.00 0.00 2.87
2829 3085 3.726557 TTCATGCACCCATCTTCTTCT 57.273 42.857 0.00 0.00 0.00 2.85
2830 3086 3.726557 TCATGCACCCATCTTCTTCTT 57.273 42.857 0.00 0.00 0.00 2.52
2831 3087 3.614092 TCATGCACCCATCTTCTTCTTC 58.386 45.455 0.00 0.00 0.00 2.87
2832 3088 3.265221 TCATGCACCCATCTTCTTCTTCT 59.735 43.478 0.00 0.00 0.00 2.85
2833 3089 3.795688 TGCACCCATCTTCTTCTTCTT 57.204 42.857 0.00 0.00 0.00 2.52
2834 3090 3.679389 TGCACCCATCTTCTTCTTCTTC 58.321 45.455 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
98 101 4.228210 TGGACCTGAATGGAGCTAGAAATT 59.772 41.667 0.00 0.00 39.71 1.82
126 129 6.309357 TGCAGCCCATTCTTTTAGATGATAT 58.691 36.000 0.00 0.00 0.00 1.63
247 252 2.427095 GGAACGCAAGATAGCCCATTTT 59.573 45.455 0.00 0.00 43.62 1.82
272 277 6.096001 ACATGATCCTTTATGTCAAAGAAGGC 59.904 38.462 0.00 0.00 38.78 4.35
461 466 5.733091 GCGCATTTGCTAATTCACTATCCAA 60.733 40.000 0.30 0.00 39.32 3.53
561 566 8.034215 ACTCAGCAAATATATCATCAGCTAGTC 58.966 37.037 0.00 0.00 0.00 2.59
593 598 2.373169 TCTCTTGTTCTCCTTGCACCAT 59.627 45.455 0.00 0.00 0.00 3.55
597 602 2.639347 TCCATCTCTTGTTCTCCTTGCA 59.361 45.455 0.00 0.00 0.00 4.08
647 652 1.886886 TACAAAAGAAGACCACCGCC 58.113 50.000 0.00 0.00 0.00 6.13
648 653 3.063588 GCTATACAAAAGAAGACCACCGC 59.936 47.826 0.00 0.00 0.00 5.68
649 654 4.504858 AGCTATACAAAAGAAGACCACCG 58.495 43.478 0.00 0.00 0.00 4.94
650 655 5.524281 GCTAGCTATACAAAAGAAGACCACC 59.476 44.000 7.70 0.00 0.00 4.61
651 656 6.256757 CAGCTAGCTATACAAAAGAAGACCAC 59.743 42.308 18.86 0.00 0.00 4.16
652 657 6.341316 CAGCTAGCTATACAAAAGAAGACCA 58.659 40.000 18.86 0.00 0.00 4.02
653 658 5.235401 GCAGCTAGCTATACAAAAGAAGACC 59.765 44.000 18.86 0.00 41.15 3.85
654 659 5.051374 CGCAGCTAGCTATACAAAAGAAGAC 60.051 44.000 18.86 0.00 42.61 3.01
655 660 5.043903 CGCAGCTAGCTATACAAAAGAAGA 58.956 41.667 18.86 0.00 42.61 2.87
656 661 4.210120 CCGCAGCTAGCTATACAAAAGAAG 59.790 45.833 18.86 1.09 42.61 2.85
657 662 4.119862 CCGCAGCTAGCTATACAAAAGAA 58.880 43.478 18.86 0.00 42.61 2.52
658 663 3.717707 CCGCAGCTAGCTATACAAAAGA 58.282 45.455 18.86 0.00 42.61 2.52
659 664 2.221981 GCCGCAGCTAGCTATACAAAAG 59.778 50.000 18.86 3.27 42.61 2.27
660 665 2.210116 GCCGCAGCTAGCTATACAAAA 58.790 47.619 18.86 0.00 42.61 2.44
661 666 1.138069 TGCCGCAGCTAGCTATACAAA 59.862 47.619 18.86 0.00 42.61 2.83
662 667 0.750249 TGCCGCAGCTAGCTATACAA 59.250 50.000 18.86 0.30 42.61 2.41
663 668 0.315251 CTGCCGCAGCTAGCTATACA 59.685 55.000 18.86 12.29 42.61 2.29
664 669 0.315568 ACTGCCGCAGCTAGCTATAC 59.684 55.000 18.86 9.19 42.61 1.47
665 670 0.315251 CACTGCCGCAGCTAGCTATA 59.685 55.000 18.86 1.26 42.61 1.31
666 671 1.068753 CACTGCCGCAGCTAGCTAT 59.931 57.895 18.86 0.00 42.61 2.97
667 672 2.496341 CACTGCCGCAGCTAGCTA 59.504 61.111 18.86 0.00 42.61 3.32
668 673 4.463879 CCACTGCCGCAGCTAGCT 62.464 66.667 20.56 12.68 42.61 3.32
669 674 4.767255 ACCACTGCCGCAGCTAGC 62.767 66.667 20.56 6.62 40.80 3.42
670 675 2.510238 GACCACTGCCGCAGCTAG 60.510 66.667 20.56 11.36 40.80 3.42
671 676 2.507110 GAAGACCACTGCCGCAGCTA 62.507 60.000 20.56 0.00 40.80 3.32
681 686 7.483580 ACTAGCTATACAAAAGAAGACCACT 57.516 36.000 0.00 0.00 0.00 4.00
745 809 7.819900 CACAACTAGCTATACAAAAGAAGACCT 59.180 37.037 0.00 0.00 0.00 3.85
1003 1242 4.392047 TCATCATCCCATGTGCAGTAATC 58.608 43.478 0.00 0.00 0.00 1.75
1158 1397 7.509546 TCATCCTTCCACTTATGTTATCCTTC 58.490 38.462 0.00 0.00 0.00 3.46
1244 1483 6.332635 TGATATCCTATTGTTGGTCCAATCCT 59.667 38.462 7.77 0.00 36.48 3.24
1264 1503 9.239551 CCAAACATCATCACTATCCATTGATAT 57.760 33.333 0.00 0.00 33.08 1.63
1518 1771 6.957631 TCAATTGGTTCTTCTAATGGCTCTA 58.042 36.000 5.42 0.00 0.00 2.43
1636 1889 2.642311 TGGAATGGGCTCAGTTGTCTTA 59.358 45.455 0.00 0.00 0.00 2.10
1741 1995 3.665745 TTGAGTACCAACTTCCCGTAC 57.334 47.619 0.00 0.00 35.56 3.67
1944 2198 3.057315 GCTTGACATAAACAGTGCATGGT 60.057 43.478 0.00 0.00 0.00 3.55
2201 2457 6.125719 TGGAATTGCATAGCTACATTACCAA 58.874 36.000 0.00 0.00 0.00 3.67
2251 2507 8.529424 TTGAAATGCCTCTGAGATTTCAATAT 57.471 30.769 26.80 2.51 44.92 1.28
2353 2609 2.092968 AGAGCTCCGTATTGAATTGGCA 60.093 45.455 10.93 0.00 0.00 4.92
2398 2654 9.098355 CCAGAGAAATTTCGAATAACACTATCA 57.902 33.333 12.42 0.00 0.00 2.15
2400 2656 9.449719 AACCAGAGAAATTTCGAATAACACTAT 57.550 29.630 12.42 0.00 0.00 2.12
2403 2659 8.073768 TGAAACCAGAGAAATTTCGAATAACAC 58.926 33.333 12.42 4.48 35.51 3.32
2408 2664 7.219484 ACATGAAACCAGAGAAATTTCGAAT 57.781 32.000 12.42 0.15 35.51 3.34
2411 2667 8.970691 ATTAACATGAAACCAGAGAAATTTCG 57.029 30.769 12.42 1.19 35.51 3.46
2412 2668 9.065871 CGATTAACATGAAACCAGAGAAATTTC 57.934 33.333 10.33 10.33 33.75 2.17
2413 2669 8.028938 CCGATTAACATGAAACCAGAGAAATTT 58.971 33.333 0.00 0.00 0.00 1.82
2414 2670 7.393234 TCCGATTAACATGAAACCAGAGAAATT 59.607 33.333 0.00 0.00 0.00 1.82
2415 2671 6.884295 TCCGATTAACATGAAACCAGAGAAAT 59.116 34.615 0.00 0.00 0.00 2.17
2416 2672 6.234920 TCCGATTAACATGAAACCAGAGAAA 58.765 36.000 0.00 0.00 0.00 2.52
2417 2673 5.800296 TCCGATTAACATGAAACCAGAGAA 58.200 37.500 0.00 0.00 0.00 2.87
2418 2674 5.414789 TCCGATTAACATGAAACCAGAGA 57.585 39.130 0.00 0.00 0.00 3.10
2419 2675 6.316140 TCATTCCGATTAACATGAAACCAGAG 59.684 38.462 0.00 0.00 0.00 3.35
2420 2676 6.176896 TCATTCCGATTAACATGAAACCAGA 58.823 36.000 0.00 0.00 0.00 3.86
2421 2677 6.094048 ACTCATTCCGATTAACATGAAACCAG 59.906 38.462 0.00 0.00 0.00 4.00
2422 2678 5.943416 ACTCATTCCGATTAACATGAAACCA 59.057 36.000 0.00 0.00 0.00 3.67
2423 2679 6.436843 ACTCATTCCGATTAACATGAAACC 57.563 37.500 0.00 0.00 0.00 3.27
2424 2680 7.807907 ACAAACTCATTCCGATTAACATGAAAC 59.192 33.333 0.00 0.00 0.00 2.78
2425 2681 7.881142 ACAAACTCATTCCGATTAACATGAAA 58.119 30.769 0.00 0.00 0.00 2.69
2426 2682 7.447374 ACAAACTCATTCCGATTAACATGAA 57.553 32.000 0.00 0.00 0.00 2.57
2427 2683 7.447374 AACAAACTCATTCCGATTAACATGA 57.553 32.000 0.00 0.00 0.00 3.07
2428 2684 9.061610 GTTAACAAACTCATTCCGATTAACATG 57.938 33.333 0.00 0.00 33.51 3.21
2429 2685 8.788806 TGTTAACAAACTCATTCCGATTAACAT 58.211 29.630 5.64 0.00 36.73 2.71
2430 2686 8.155821 TGTTAACAAACTCATTCCGATTAACA 57.844 30.769 5.64 0.00 38.36 2.41
2431 2687 9.113876 CTTGTTAACAAACTCATTCCGATTAAC 57.886 33.333 20.89 0.00 35.15 2.01
2432 2688 9.058174 TCTTGTTAACAAACTCATTCCGATTAA 57.942 29.630 20.89 0.00 35.15 1.40
2433 2689 8.500773 GTCTTGTTAACAAACTCATTCCGATTA 58.499 33.333 20.89 0.00 35.15 1.75
2434 2690 7.228706 AGTCTTGTTAACAAACTCATTCCGATT 59.771 33.333 20.89 6.57 35.15 3.34
2435 2691 6.710744 AGTCTTGTTAACAAACTCATTCCGAT 59.289 34.615 20.89 2.74 35.15 4.18
2436 2692 6.053005 AGTCTTGTTAACAAACTCATTCCGA 58.947 36.000 20.89 9.28 35.15 4.55
2437 2693 6.300354 AGTCTTGTTAACAAACTCATTCCG 57.700 37.500 20.89 7.20 35.15 4.30
2438 2694 7.703328 TCAAGTCTTGTTAACAAACTCATTCC 58.297 34.615 23.92 9.31 35.15 3.01
2439 2695 9.387123 GATCAAGTCTTGTTAACAAACTCATTC 57.613 33.333 23.92 18.75 35.15 2.67
2440 2696 8.902806 TGATCAAGTCTTGTTAACAAACTCATT 58.097 29.630 23.92 16.25 35.15 2.57
2441 2697 8.450578 TGATCAAGTCTTGTTAACAAACTCAT 57.549 30.769 23.92 20.18 35.15 2.90
2442 2698 7.857734 TGATCAAGTCTTGTTAACAAACTCA 57.142 32.000 23.92 18.29 35.15 3.41
2443 2699 7.644157 GGTTGATCAAGTCTTGTTAACAAACTC 59.356 37.037 23.92 16.71 35.15 3.01
2444 2700 7.339466 AGGTTGATCAAGTCTTGTTAACAAACT 59.661 33.333 20.89 20.82 35.15 2.66
2445 2701 7.480810 AGGTTGATCAAGTCTTGTTAACAAAC 58.519 34.615 20.89 19.29 35.15 2.93
2446 2702 7.639113 AGGTTGATCAAGTCTTGTTAACAAA 57.361 32.000 20.89 10.09 35.15 2.83
2447 2703 7.122055 ACAAGGTTGATCAAGTCTTGTTAACAA 59.878 33.333 31.18 19.53 40.14 2.83
2448 2704 6.601613 ACAAGGTTGATCAAGTCTTGTTAACA 59.398 34.615 31.18 3.59 40.14 2.41
2449 2705 7.027778 ACAAGGTTGATCAAGTCTTGTTAAC 57.972 36.000 31.18 12.52 40.14 2.01
2450 2706 7.639113 AACAAGGTTGATCAAGTCTTGTTAA 57.361 32.000 37.05 9.33 44.54 2.01
2451 2707 7.990886 ACTAACAAGGTTGATCAAGTCTTGTTA 59.009 33.333 37.06 37.06 44.54 2.41
2452 2708 6.828785 ACTAACAAGGTTGATCAAGTCTTGTT 59.171 34.615 38.00 38.00 46.05 2.83
2453 2709 6.260936 CACTAACAAGGTTGATCAAGTCTTGT 59.739 38.462 31.18 31.18 42.44 3.16
2454 2710 6.293626 CCACTAACAAGGTTGATCAAGTCTTG 60.294 42.308 30.33 30.33 38.06 3.02
2455 2711 5.765182 CCACTAACAAGGTTGATCAAGTCTT 59.235 40.000 8.80 12.57 0.00 3.01
2456 2712 5.071788 TCCACTAACAAGGTTGATCAAGTCT 59.928 40.000 8.80 6.90 0.00 3.24
2457 2713 5.305585 TCCACTAACAAGGTTGATCAAGTC 58.694 41.667 8.80 4.50 0.00 3.01
2458 2714 5.304686 TCCACTAACAAGGTTGATCAAGT 57.695 39.130 8.80 0.00 0.00 3.16
2459 2715 6.127897 GGAATCCACTAACAAGGTTGATCAAG 60.128 42.308 8.80 0.00 0.00 3.02
2460 2716 5.710099 GGAATCCACTAACAAGGTTGATCAA 59.290 40.000 3.38 3.38 0.00 2.57
2461 2717 5.014123 AGGAATCCACTAACAAGGTTGATCA 59.986 40.000 0.61 0.00 0.00 2.92
2462 2718 5.501156 AGGAATCCACTAACAAGGTTGATC 58.499 41.667 0.61 0.00 0.00 2.92
2463 2719 5.520748 AGGAATCCACTAACAAGGTTGAT 57.479 39.130 0.61 0.00 0.00 2.57
2464 2720 4.993705 AGGAATCCACTAACAAGGTTGA 57.006 40.909 0.61 0.00 0.00 3.18
2465 2721 6.040391 TCAAAAGGAATCCACTAACAAGGTTG 59.960 38.462 0.61 0.00 0.00 3.77
2466 2722 6.133356 TCAAAAGGAATCCACTAACAAGGTT 58.867 36.000 0.61 0.00 0.00 3.50
2467 2723 5.701224 TCAAAAGGAATCCACTAACAAGGT 58.299 37.500 0.61 0.00 0.00 3.50
2468 2724 6.434028 TCATCAAAAGGAATCCACTAACAAGG 59.566 38.462 0.61 0.00 0.00 3.61
2469 2725 7.452880 TCATCAAAAGGAATCCACTAACAAG 57.547 36.000 0.61 0.00 0.00 3.16
2470 2726 6.071952 GCTCATCAAAAGGAATCCACTAACAA 60.072 38.462 0.61 0.00 0.00 2.83
2471 2727 5.415701 GCTCATCAAAAGGAATCCACTAACA 59.584 40.000 0.61 0.00 0.00 2.41
2472 2728 5.415701 TGCTCATCAAAAGGAATCCACTAAC 59.584 40.000 0.61 0.00 0.00 2.34
2473 2729 5.569355 TGCTCATCAAAAGGAATCCACTAA 58.431 37.500 0.61 0.00 0.00 2.24
2474 2730 5.178096 TGCTCATCAAAAGGAATCCACTA 57.822 39.130 0.61 0.00 0.00 2.74
2475 2731 4.038271 TGCTCATCAAAAGGAATCCACT 57.962 40.909 0.61 0.00 0.00 4.00
2476 2732 4.400251 TCATGCTCATCAAAAGGAATCCAC 59.600 41.667 0.61 0.00 0.00 4.02
2477 2733 4.602107 TCATGCTCATCAAAAGGAATCCA 58.398 39.130 0.61 0.00 0.00 3.41
2478 2734 4.885907 TCTCATGCTCATCAAAAGGAATCC 59.114 41.667 0.00 0.00 0.00 3.01
2479 2735 6.439599 CATCTCATGCTCATCAAAAGGAATC 58.560 40.000 0.00 0.00 0.00 2.52
2480 2736 5.302059 CCATCTCATGCTCATCAAAAGGAAT 59.698 40.000 0.00 0.00 0.00 3.01
2481 2737 4.643334 CCATCTCATGCTCATCAAAAGGAA 59.357 41.667 0.00 0.00 0.00 3.36
2482 2738 4.080186 TCCATCTCATGCTCATCAAAAGGA 60.080 41.667 0.00 0.00 0.00 3.36
2483 2739 4.204799 TCCATCTCATGCTCATCAAAAGG 58.795 43.478 0.00 0.00 0.00 3.11
2484 2740 5.531287 TCATCCATCTCATGCTCATCAAAAG 59.469 40.000 0.00 0.00 0.00 2.27
2485 2741 5.442391 TCATCCATCTCATGCTCATCAAAA 58.558 37.500 0.00 0.00 0.00 2.44
2486 2742 5.043737 TCATCCATCTCATGCTCATCAAA 57.956 39.130 0.00 0.00 0.00 2.69
2487 2743 4.699925 TCATCCATCTCATGCTCATCAA 57.300 40.909 0.00 0.00 0.00 2.57
2488 2744 4.699925 TTCATCCATCTCATGCTCATCA 57.300 40.909 0.00 0.00 0.00 3.07
2489 2745 5.064558 AGTTTCATCCATCTCATGCTCATC 58.935 41.667 0.00 0.00 0.00 2.92
2490 2746 5.050126 AGTTTCATCCATCTCATGCTCAT 57.950 39.130 0.00 0.00 0.00 2.90
2491 2747 4.498894 AGTTTCATCCATCTCATGCTCA 57.501 40.909 0.00 0.00 0.00 4.26
2492 2748 5.851720 TCTAGTTTCATCCATCTCATGCTC 58.148 41.667 0.00 0.00 0.00 4.26
2493 2749 5.883685 TCTAGTTTCATCCATCTCATGCT 57.116 39.130 0.00 0.00 0.00 3.79
2494 2750 5.049543 GCTTCTAGTTTCATCCATCTCATGC 60.050 44.000 0.00 0.00 0.00 4.06
2495 2751 6.018098 GTGCTTCTAGTTTCATCCATCTCATG 60.018 42.308 0.00 0.00 0.00 3.07
2496 2752 6.054295 GTGCTTCTAGTTTCATCCATCTCAT 58.946 40.000 0.00 0.00 0.00 2.90
2497 2753 5.046376 TGTGCTTCTAGTTTCATCCATCTCA 60.046 40.000 0.00 0.00 0.00 3.27
2498 2754 5.423015 TGTGCTTCTAGTTTCATCCATCTC 58.577 41.667 0.00 0.00 0.00 2.75
2499 2755 5.426689 TGTGCTTCTAGTTTCATCCATCT 57.573 39.130 0.00 0.00 0.00 2.90
2500 2756 5.163713 GGTTGTGCTTCTAGTTTCATCCATC 60.164 44.000 0.00 0.00 0.00 3.51
2501 2757 4.702131 GGTTGTGCTTCTAGTTTCATCCAT 59.298 41.667 0.00 0.00 0.00 3.41
2502 2758 4.072131 GGTTGTGCTTCTAGTTTCATCCA 58.928 43.478 0.00 0.00 0.00 3.41
2503 2759 4.327680 AGGTTGTGCTTCTAGTTTCATCC 58.672 43.478 0.00 0.00 0.00 3.51
2504 2760 5.703130 AGAAGGTTGTGCTTCTAGTTTCATC 59.297 40.000 0.00 0.00 38.06 2.92
2505 2761 5.471456 CAGAAGGTTGTGCTTCTAGTTTCAT 59.529 40.000 0.00 0.00 37.78 2.57
2506 2762 4.816385 CAGAAGGTTGTGCTTCTAGTTTCA 59.184 41.667 0.00 0.00 37.78 2.69
2507 2763 4.816925 ACAGAAGGTTGTGCTTCTAGTTTC 59.183 41.667 0.00 0.00 37.78 2.78
2508 2764 4.781934 ACAGAAGGTTGTGCTTCTAGTTT 58.218 39.130 0.00 0.00 37.78 2.66
2509 2765 4.423625 ACAGAAGGTTGTGCTTCTAGTT 57.576 40.909 0.00 0.00 37.78 2.24
2510 2766 4.262506 GGTACAGAAGGTTGTGCTTCTAGT 60.263 45.833 0.00 0.00 37.78 2.57
2511 2767 4.246458 GGTACAGAAGGTTGTGCTTCTAG 58.754 47.826 0.00 0.00 37.78 2.43
2512 2768 3.007614 GGGTACAGAAGGTTGTGCTTCTA 59.992 47.826 0.00 0.00 37.78 2.10
2513 2769 2.224548 GGGTACAGAAGGTTGTGCTTCT 60.225 50.000 0.00 0.00 40.18 2.85
2514 2770 2.152016 GGGTACAGAAGGTTGTGCTTC 58.848 52.381 0.00 0.00 34.58 3.86
2515 2771 1.774856 AGGGTACAGAAGGTTGTGCTT 59.225 47.619 0.00 0.00 34.58 3.91
2516 2772 1.348036 GAGGGTACAGAAGGTTGTGCT 59.652 52.381 0.00 0.00 34.58 4.40
2517 2773 1.348036 AGAGGGTACAGAAGGTTGTGC 59.652 52.381 0.00 0.00 33.56 4.57
2518 2774 2.900546 AGAGAGGGTACAGAAGGTTGTG 59.099 50.000 0.00 0.00 32.56 3.33
2519 2775 3.261818 AGAGAGGGTACAGAAGGTTGT 57.738 47.619 0.00 0.00 35.09 3.32
2520 2776 6.130569 AGTATAGAGAGGGTACAGAAGGTTG 58.869 44.000 0.00 0.00 0.00 3.77
2521 2777 6.344232 AGTATAGAGAGGGTACAGAAGGTT 57.656 41.667 0.00 0.00 0.00 3.50
2522 2778 5.998128 AGTATAGAGAGGGTACAGAAGGT 57.002 43.478 0.00 0.00 0.00 3.50
2523 2779 7.013846 CAGAAAGTATAGAGAGGGTACAGAAGG 59.986 44.444 0.00 0.00 0.00 3.46
2524 2780 7.558444 ACAGAAAGTATAGAGAGGGTACAGAAG 59.442 40.741 0.00 0.00 0.00 2.85
2525 2781 7.411808 ACAGAAAGTATAGAGAGGGTACAGAA 58.588 38.462 0.00 0.00 0.00 3.02
2526 2782 6.971340 ACAGAAAGTATAGAGAGGGTACAGA 58.029 40.000 0.00 0.00 0.00 3.41
2527 2783 7.648039 AACAGAAAGTATAGAGAGGGTACAG 57.352 40.000 0.00 0.00 0.00 2.74
2528 2784 9.710818 AATAACAGAAAGTATAGAGAGGGTACA 57.289 33.333 0.00 0.00 0.00 2.90
2583 2839 9.591792 CACAGATAATCAGATAACAGACAGAAA 57.408 33.333 0.00 0.00 0.00 2.52
2584 2840 7.708322 GCACAGATAATCAGATAACAGACAGAA 59.292 37.037 0.00 0.00 0.00 3.02
2585 2841 7.147846 TGCACAGATAATCAGATAACAGACAGA 60.148 37.037 0.00 0.00 0.00 3.41
2586 2842 6.982724 TGCACAGATAATCAGATAACAGACAG 59.017 38.462 0.00 0.00 0.00 3.51
2587 2843 6.877236 TGCACAGATAATCAGATAACAGACA 58.123 36.000 0.00 0.00 0.00 3.41
2588 2844 7.776933 TTGCACAGATAATCAGATAACAGAC 57.223 36.000 0.00 0.00 0.00 3.51
2602 2858 9.990360 TCGAGGTATTTTTATATTGCACAGATA 57.010 29.630 0.00 0.00 0.00 1.98
2603 2859 8.902540 TCGAGGTATTTTTATATTGCACAGAT 57.097 30.769 0.00 0.00 0.00 2.90
2604 2860 8.725405 TTCGAGGTATTTTTATATTGCACAGA 57.275 30.769 0.00 0.00 0.00 3.41
2605 2861 9.781834 TTTTCGAGGTATTTTTATATTGCACAG 57.218 29.630 0.00 0.00 0.00 3.66
2618 2874 9.292195 TGGAGAACTTTTATTTTCGAGGTATTT 57.708 29.630 0.00 0.00 0.00 1.40
2619 2875 8.857694 TGGAGAACTTTTATTTTCGAGGTATT 57.142 30.769 0.00 0.00 0.00 1.89
2620 2876 8.857694 TTGGAGAACTTTTATTTTCGAGGTAT 57.142 30.769 0.00 0.00 0.00 2.73
2621 2877 8.680039 TTTGGAGAACTTTTATTTTCGAGGTA 57.320 30.769 0.00 0.00 0.00 3.08
2622 2878 7.576861 TTTGGAGAACTTTTATTTTCGAGGT 57.423 32.000 0.00 0.00 0.00 3.85
2623 2879 7.062255 GCATTTGGAGAACTTTTATTTTCGAGG 59.938 37.037 0.00 0.00 0.00 4.63
2624 2880 7.062255 GGCATTTGGAGAACTTTTATTTTCGAG 59.938 37.037 0.00 0.00 0.00 4.04
2625 2881 6.866248 GGCATTTGGAGAACTTTTATTTTCGA 59.134 34.615 0.00 0.00 0.00 3.71
2626 2882 6.090763 GGGCATTTGGAGAACTTTTATTTTCG 59.909 38.462 0.00 0.00 0.00 3.46
2627 2883 7.118245 CAGGGCATTTGGAGAACTTTTATTTTC 59.882 37.037 0.00 0.00 0.00 2.29
2628 2884 6.936335 CAGGGCATTTGGAGAACTTTTATTTT 59.064 34.615 0.00 0.00 0.00 1.82
2629 2885 6.269769 TCAGGGCATTTGGAGAACTTTTATTT 59.730 34.615 0.00 0.00 0.00 1.40
2630 2886 5.779771 TCAGGGCATTTGGAGAACTTTTATT 59.220 36.000 0.00 0.00 0.00 1.40
2631 2887 5.332743 TCAGGGCATTTGGAGAACTTTTAT 58.667 37.500 0.00 0.00 0.00 1.40
2632 2888 4.735369 TCAGGGCATTTGGAGAACTTTTA 58.265 39.130 0.00 0.00 0.00 1.52
2633 2889 3.575805 TCAGGGCATTTGGAGAACTTTT 58.424 40.909 0.00 0.00 0.00 2.27
2634 2890 3.243359 TCAGGGCATTTGGAGAACTTT 57.757 42.857 0.00 0.00 0.00 2.66
2635 2891 2.978156 TCAGGGCATTTGGAGAACTT 57.022 45.000 0.00 0.00 0.00 2.66
2636 2892 2.978156 TTCAGGGCATTTGGAGAACT 57.022 45.000 0.00 0.00 0.00 3.01
2637 2893 4.541973 ATTTTCAGGGCATTTGGAGAAC 57.458 40.909 0.00 0.00 0.00 3.01
2638 2894 6.678568 TTAATTTTCAGGGCATTTGGAGAA 57.321 33.333 0.00 0.00 0.00 2.87
2639 2895 6.678568 TTTAATTTTCAGGGCATTTGGAGA 57.321 33.333 0.00 0.00 0.00 3.71
2640 2896 9.048446 CATATTTAATTTTCAGGGCATTTGGAG 57.952 33.333 0.00 0.00 0.00 3.86
2641 2897 8.766476 TCATATTTAATTTTCAGGGCATTTGGA 58.234 29.630 0.00 0.00 0.00 3.53
2642 2898 8.961294 TCATATTTAATTTTCAGGGCATTTGG 57.039 30.769 0.00 0.00 0.00 3.28
2681 2937 8.869109 TGTTCTTTGTTCCATAAATCCTCAAAT 58.131 29.630 0.00 0.00 0.00 2.32
2682 2938 8.141268 GTGTTCTTTGTTCCATAAATCCTCAAA 58.859 33.333 0.00 0.00 0.00 2.69
2683 2939 7.286546 TGTGTTCTTTGTTCCATAAATCCTCAA 59.713 33.333 0.00 0.00 0.00 3.02
2684 2940 6.775142 TGTGTTCTTTGTTCCATAAATCCTCA 59.225 34.615 0.00 0.00 0.00 3.86
2685 2941 7.084486 GTGTGTTCTTTGTTCCATAAATCCTC 58.916 38.462 0.00 0.00 0.00 3.71
2686 2942 6.015434 GGTGTGTTCTTTGTTCCATAAATCCT 60.015 38.462 0.00 0.00 0.00 3.24
2687 2943 6.156519 GGTGTGTTCTTTGTTCCATAAATCC 58.843 40.000 0.00 0.00 0.00 3.01
2688 2944 6.744112 TGGTGTGTTCTTTGTTCCATAAATC 58.256 36.000 0.00 0.00 0.00 2.17
2689 2945 6.239289 CCTGGTGTGTTCTTTGTTCCATAAAT 60.239 38.462 0.00 0.00 0.00 1.40
2690 2946 5.068460 CCTGGTGTGTTCTTTGTTCCATAAA 59.932 40.000 0.00 0.00 0.00 1.40
2691 2947 4.582656 CCTGGTGTGTTCTTTGTTCCATAA 59.417 41.667 0.00 0.00 0.00 1.90
2692 2948 4.141287 CCTGGTGTGTTCTTTGTTCCATA 58.859 43.478 0.00 0.00 0.00 2.74
2693 2949 2.958355 CCTGGTGTGTTCTTTGTTCCAT 59.042 45.455 0.00 0.00 0.00 3.41
2694 2950 2.374184 CCTGGTGTGTTCTTTGTTCCA 58.626 47.619 0.00 0.00 0.00 3.53
2695 2951 1.681264 CCCTGGTGTGTTCTTTGTTCC 59.319 52.381 0.00 0.00 0.00 3.62
2696 2952 1.681264 CCCCTGGTGTGTTCTTTGTTC 59.319 52.381 0.00 0.00 0.00 3.18
2697 2953 1.687996 CCCCCTGGTGTGTTCTTTGTT 60.688 52.381 0.00 0.00 0.00 2.83
2698 2954 0.106217 CCCCCTGGTGTGTTCTTTGT 60.106 55.000 0.00 0.00 0.00 2.83
2699 2955 1.463553 GCCCCCTGGTGTGTTCTTTG 61.464 60.000 0.00 0.00 0.00 2.77
2700 2956 1.152546 GCCCCCTGGTGTGTTCTTT 60.153 57.895 0.00 0.00 0.00 2.52
2701 2957 2.520968 GCCCCCTGGTGTGTTCTT 59.479 61.111 0.00 0.00 0.00 2.52
2702 2958 3.580319 GGCCCCCTGGTGTGTTCT 61.580 66.667 0.00 0.00 0.00 3.01
2703 2959 3.444818 TTGGCCCCCTGGTGTGTTC 62.445 63.158 0.00 0.00 0.00 3.18
2704 2960 3.434179 TTGGCCCCCTGGTGTGTT 61.434 61.111 0.00 0.00 0.00 3.32
2705 2961 4.218686 GTTGGCCCCCTGGTGTGT 62.219 66.667 0.00 0.00 0.00 3.72
2706 2962 4.994756 GGTTGGCCCCCTGGTGTG 62.995 72.222 0.00 0.00 0.00 3.82
2708 2964 4.994756 GTGGTTGGCCCCCTGGTG 62.995 72.222 0.00 0.00 0.00 4.17
2711 2967 3.914713 AAGGTGGTTGGCCCCCTG 61.915 66.667 0.00 0.00 34.97 4.45
2712 2968 3.914713 CAAGGTGGTTGGCCCCCT 61.915 66.667 0.00 0.00 35.93 4.79
2718 2974 2.203280 TCGTGGCAAGGTGGTTGG 60.203 61.111 0.00 0.00 36.56 3.77
2719 2975 2.260869 CCTCGTGGCAAGGTGGTTG 61.261 63.158 0.00 0.00 39.41 3.77
2720 2976 2.113139 CCTCGTGGCAAGGTGGTT 59.887 61.111 0.00 0.00 0.00 3.67
2721 2977 3.953775 CCCTCGTGGCAAGGTGGT 61.954 66.667 4.59 0.00 31.51 4.16
2722 2978 3.953775 ACCCTCGTGGCAAGGTGG 61.954 66.667 4.59 6.12 37.83 4.61
2723 2979 2.669569 CACCCTCGTGGCAAGGTG 60.670 66.667 11.39 11.39 43.50 4.00
2776 3032 4.802051 CACCATGGGCCCACGAGG 62.802 72.222 31.51 30.11 39.47 4.63
2777 3033 4.802051 CCACCATGGGCCCACGAG 62.802 72.222 31.51 21.41 32.67 4.18
2785 3041 3.813724 GAGGAGGGCCACCATGGG 61.814 72.222 22.59 4.89 38.19 4.00
2786 3042 3.813724 GGAGGAGGGCCACCATGG 61.814 72.222 22.59 11.19 43.72 3.66
2792 3048 1.213296 GAATAAGTGGAGGAGGGCCA 58.787 55.000 6.18 0.00 36.29 5.36
2793 3049 1.213296 TGAATAAGTGGAGGAGGGCC 58.787 55.000 0.00 0.00 0.00 5.80
2794 3050 2.856222 CATGAATAAGTGGAGGAGGGC 58.144 52.381 0.00 0.00 0.00 5.19
2795 3051 2.173356 TGCATGAATAAGTGGAGGAGGG 59.827 50.000 0.00 0.00 0.00 4.30
2796 3052 3.209410 GTGCATGAATAAGTGGAGGAGG 58.791 50.000 0.00 0.00 0.00 4.30
2797 3053 3.209410 GGTGCATGAATAAGTGGAGGAG 58.791 50.000 0.00 0.00 0.00 3.69
2798 3054 2.092429 GGGTGCATGAATAAGTGGAGGA 60.092 50.000 0.00 0.00 0.00 3.71
2799 3055 2.301346 GGGTGCATGAATAAGTGGAGG 58.699 52.381 0.00 0.00 0.00 4.30
2800 3056 3.003394 TGGGTGCATGAATAAGTGGAG 57.997 47.619 0.00 0.00 0.00 3.86
2801 3057 3.202818 AGATGGGTGCATGAATAAGTGGA 59.797 43.478 0.00 0.00 0.00 4.02
2802 3058 3.559069 AGATGGGTGCATGAATAAGTGG 58.441 45.455 0.00 0.00 0.00 4.00
2803 3059 4.885907 AGAAGATGGGTGCATGAATAAGTG 59.114 41.667 0.00 0.00 0.00 3.16
2804 3060 5.121380 AGAAGATGGGTGCATGAATAAGT 57.879 39.130 0.00 0.00 0.00 2.24
2805 3061 5.826737 AGAAGAAGATGGGTGCATGAATAAG 59.173 40.000 0.00 0.00 0.00 1.73
2806 3062 5.759059 AGAAGAAGATGGGTGCATGAATAA 58.241 37.500 0.00 0.00 0.00 1.40
2807 3063 5.378230 AGAAGAAGATGGGTGCATGAATA 57.622 39.130 0.00 0.00 0.00 1.75
2808 3064 4.246712 AGAAGAAGATGGGTGCATGAAT 57.753 40.909 0.00 0.00 0.00 2.57
2809 3065 3.726557 AGAAGAAGATGGGTGCATGAA 57.273 42.857 0.00 0.00 0.00 2.57
2810 3066 3.265221 AGAAGAAGAAGATGGGTGCATGA 59.735 43.478 0.00 0.00 0.00 3.07
2811 3067 3.618351 AGAAGAAGAAGATGGGTGCATG 58.382 45.455 0.00 0.00 0.00 4.06
2812 3068 4.268359 GAAGAAGAAGAAGATGGGTGCAT 58.732 43.478 0.00 0.00 0.00 3.96
2813 3069 3.679389 GAAGAAGAAGAAGATGGGTGCA 58.321 45.455 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.