Multiple sequence alignment - TraesCS6A01G163000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G163000 chr6A 100.000 2399 0 0 355 2753 158246112 158243714 0.000000e+00 4431.0
1 TraesCS6A01G163000 chr6A 85.317 899 106 14 923 1803 107264411 107265301 0.000000e+00 905.0
2 TraesCS6A01G163000 chr6A 100.000 191 0 0 355 545 158245602 158245412 1.210000e-93 353.0
3 TraesCS6A01G163000 chr6A 100.000 191 0 0 865 1055 158246112 158245922 1.210000e-93 353.0
4 TraesCS6A01G163000 chr6A 100.000 80 0 0 1 80 158246466 158246387 6.140000e-32 148.0
5 TraesCS6A01G163000 chr6A 86.869 99 11 2 568 665 506519679 506519582 2.900000e-20 110.0
6 TraesCS6A01G163000 chr6D 91.426 1936 106 25 855 2753 122989513 122991425 0.000000e+00 2601.0
7 TraesCS6A01G163000 chr6D 91.667 1152 48 16 662 1784 122979324 122980456 0.000000e+00 1552.0
8 TraesCS6A01G163000 chr6D 91.166 1098 51 19 742 1804 124609586 124608500 0.000000e+00 1448.0
9 TraesCS6A01G163000 chr6D 81.614 669 51 36 1877 2518 122980462 122981085 3.190000e-134 488.0
10 TraesCS6A01G163000 chr6D 96.517 201 6 1 2511 2710 122982029 122982229 5.680000e-87 331.0
11 TraesCS6A01G163000 chr6D 94.241 191 7 2 355 545 122979526 122979712 3.470000e-74 289.0
12 TraesCS6A01G163000 chr6D 93.431 137 7 2 410 545 124609396 124609261 4.650000e-48 202.0
13 TraesCS6A01G163000 chr6D 85.047 214 9 10 355 545 122989524 122989737 2.160000e-46 196.0
14 TraesCS6A01G163000 chr6D 96.000 50 2 0 356 405 124609472 124609423 6.320000e-12 82.4
15 TraesCS6A01G163000 chr6B 89.214 2151 126 47 662 2753 216631376 216633479 0.000000e+00 2590.0
16 TraesCS6A01G163000 chr6B 89.806 206 6 7 355 545 216631592 216631797 1.640000e-62 250.0
17 TraesCS6A01G163000 chr6B 98.750 80 1 0 1 80 279204183 279204104 2.860000e-30 143.0
18 TraesCS6A01G163000 chr1B 85.597 1097 89 24 766 1809 398840601 398839521 0.000000e+00 1086.0
19 TraesCS6A01G163000 chr1B 86.927 742 79 7 1017 1740 398962051 398962792 0.000000e+00 817.0
20 TraesCS6A01G163000 chr1B 89.894 188 10 8 2230 2412 398839188 398839005 1.650000e-57 233.0
21 TraesCS6A01G163000 chr1B 82.375 261 22 6 1840 2089 133109657 133109410 3.590000e-49 206.0
22 TraesCS6A01G163000 chr1B 81.609 261 24 6 1840 2089 426480248 426480001 7.780000e-46 195.0
23 TraesCS6A01G163000 chr1B 84.878 205 15 2 355 543 398899474 398899678 2.800000e-45 193.0
24 TraesCS6A01G163000 chr1B 98.750 80 1 0 1 80 527382770 527382849 2.860000e-30 143.0
25 TraesCS6A01G163000 chr1B 98.734 79 1 0 1 79 634314885 634314963 1.030000e-29 141.0
26 TraesCS6A01G163000 chr1B 81.915 188 10 10 355 519 398840511 398840325 1.330000e-28 137.0
27 TraesCS6A01G163000 chr7D 83.034 1279 128 39 780 2024 545646941 545648164 0.000000e+00 1077.0
28 TraesCS6A01G163000 chr7D 87.427 851 54 25 1877 2722 545652594 545653396 0.000000e+00 929.0
29 TraesCS6A01G163000 chr7D 88.996 727 65 4 1001 1712 518768984 518769710 0.000000e+00 885.0
30 TraesCS6A01G163000 chr7D 83.096 1053 86 46 1720 2753 518774642 518775621 0.000000e+00 874.0
31 TraesCS6A01G163000 chr7D 88.484 686 63 7 1018 1687 545266879 545266194 0.000000e+00 815.0
32 TraesCS6A01G163000 chr7D 76.678 1505 192 96 923 2361 509573803 509572392 0.000000e+00 688.0
33 TraesCS6A01G163000 chr7D 85.414 665 84 8 1022 1679 530110906 530111564 0.000000e+00 678.0
34 TraesCS6A01G163000 chr7D 86.136 339 30 10 1761 2092 509597979 509597651 1.570000e-92 350.0
35 TraesCS6A01G163000 chr7D 88.776 98 7 2 418 511 545647062 545647159 1.730000e-22 117.0
36 TraesCS6A01G163000 chr7D 100.000 29 0 0 2409 2437 545618490 545618462 1.000000e-03 54.7
37 TraesCS6A01G163000 chr7A 85.168 1072 103 27 773 1809 628390147 628389097 0.000000e+00 1048.0
38 TraesCS6A01G163000 chr7A 88.433 804 72 11 1017 1801 626992528 626991727 0.000000e+00 950.0
39 TraesCS6A01G163000 chr7A 86.139 909 90 21 912 1800 627232533 627231641 0.000000e+00 948.0
40 TraesCS6A01G163000 chr7A 86.553 818 79 15 991 1794 628385786 628384986 0.000000e+00 872.0
41 TraesCS6A01G163000 chr7A 86.286 824 85 15 991 1803 628645621 628646427 0.000000e+00 870.0
42 TraesCS6A01G163000 chr7A 86.094 827 90 13 924 1736 169958422 169957607 0.000000e+00 867.0
43 TraesCS6A01G163000 chr7A 82.929 1031 97 49 1019 2024 628492196 628491220 0.000000e+00 856.0
44 TraesCS6A01G163000 chr7A 84.687 862 96 23 915 1762 628488090 628487251 0.000000e+00 828.0
45 TraesCS6A01G163000 chr7A 87.278 731 74 7 991 1703 594434566 594435295 0.000000e+00 817.0
46 TraesCS6A01G163000 chr7A 86.986 730 77 11 1083 1809 628520615 628521329 0.000000e+00 806.0
47 TraesCS6A01G163000 chr7A 81.810 1061 95 46 1709 2753 594449126 594450104 0.000000e+00 800.0
48 TraesCS6A01G163000 chr7A 86.817 622 37 17 2151 2753 169955548 169954953 0.000000e+00 652.0
49 TraesCS6A01G163000 chr7A 90.270 185 11 4 2230 2412 628647319 628647498 4.580000e-58 235.0
50 TraesCS6A01G163000 chr7A 93.289 149 8 2 2606 2753 628647687 628647834 4.620000e-53 219.0
51 TraesCS6A01G163000 chr7A 92.593 135 7 1 2409 2540 628647536 628647670 1.010000e-44 191.0
52 TraesCS6A01G163000 chr7A 91.837 98 8 0 568 665 609131363 609131266 1.330000e-28 137.0
53 TraesCS6A01G163000 chr7A 77.528 178 25 9 355 523 628390064 628389893 2.920000e-15 93.5
54 TraesCS6A01G163000 chr7A 100.000 28 0 0 355 382 628520570 628520597 5.000000e-03 52.8
55 TraesCS6A01G163000 chr5D 86.140 974 82 21 861 1809 331837710 331838655 0.000000e+00 1002.0
56 TraesCS6A01G163000 chr5D 86.447 273 18 10 2484 2753 42080292 42080036 5.800000e-72 281.0
57 TraesCS6A01G163000 chr5D 86.243 189 13 4 355 543 331837714 331837889 2.800000e-45 193.0
58 TraesCS6A01G163000 chr5D 97.727 44 1 0 2409 2452 331839165 331839208 2.940000e-10 76.8
59 TraesCS6A01G163000 chr7B 86.629 890 50 32 1877 2753 589937084 589937917 0.000000e+00 920.0
60 TraesCS6A01G163000 chr7B 86.126 764 70 17 992 1740 588823375 588822633 0.000000e+00 791.0
61 TraesCS6A01G163000 chr7B 86.724 467 53 3 995 1452 589896669 589897135 6.800000e-141 510.0
62 TraesCS6A01G163000 chr7B 91.542 201 11 4 1893 2092 537746249 537746054 3.490000e-69 272.0
63 TraesCS6A01G163000 chr7B 85.308 211 19 4 1814 2022 589737532 589737732 9.990000e-50 207.0
64 TraesCS6A01G163000 chr7B 82.443 262 13 16 1831 2092 537824610 537824382 6.010000e-47 198.0
65 TraesCS6A01G163000 chr7B 86.243 189 14 3 355 543 589700751 589700575 7.780000e-46 195.0
66 TraesCS6A01G163000 chr7B 75.879 398 43 28 1892 2279 589921835 589922189 1.320000e-33 154.0
67 TraesCS6A01G163000 chr7B 98.750 80 1 0 1 80 112125302 112125381 2.860000e-30 143.0
68 TraesCS6A01G163000 chr7B 76.744 215 17 16 1720 1922 588876408 588876215 3.780000e-14 89.8
69 TraesCS6A01G163000 chr7B 100.000 28 0 0 637 664 594179909 594179882 5.000000e-03 52.8
70 TraesCS6A01G163000 chr5B 98.750 80 1 0 1 80 425360697 425360618 2.860000e-30 143.0
71 TraesCS6A01G163000 chr5B 98.750 80 1 0 1 80 456390110 456390031 2.860000e-30 143.0
72 TraesCS6A01G163000 chr3B 98.750 80 1 0 1 80 683820998 683821077 2.860000e-30 143.0
73 TraesCS6A01G163000 chr2B 98.750 80 1 0 1 80 728582558 728582637 2.860000e-30 143.0
74 TraesCS6A01G163000 chr2A 98.750 80 1 0 1 80 3830790 3830869 2.860000e-30 143.0
75 TraesCS6A01G163000 chr2A 87.368 95 10 1 568 662 221314285 221314377 1.040000e-19 108.0
76 TraesCS6A01G163000 chr2D 90.625 96 9 0 569 664 647409618 647409523 8.000000e-26 128.0
77 TraesCS6A01G163000 chr4A 89.691 97 10 0 568 664 87785981 87785885 1.040000e-24 124.0
78 TraesCS6A01G163000 chr1A 89.691 97 10 0 568 664 293723785 293723689 1.040000e-24 124.0
79 TraesCS6A01G163000 chr3A 82.014 139 12 8 359 485 55501495 55501358 3.750000e-19 106.0
80 TraesCS6A01G163000 chr3A 100.000 29 0 0 543 571 57968874 57968902 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G163000 chr6A 158243714 158246466 2752 True 1321.250000 4431 100.000000 1 2753 4 chr6A.!!$R2 2752
1 TraesCS6A01G163000 chr6A 107264411 107265301 890 False 905.000000 905 85.317000 923 1803 1 chr6A.!!$F1 880
2 TraesCS6A01G163000 chr6D 122989513 122991425 1912 False 1398.500000 2601 88.236500 355 2753 2 chr6D.!!$F2 2398
3 TraesCS6A01G163000 chr6D 122979324 122982229 2905 False 665.000000 1552 91.009750 355 2710 4 chr6D.!!$F1 2355
4 TraesCS6A01G163000 chr6D 124608500 124609586 1086 True 577.466667 1448 93.532333 356 1804 3 chr6D.!!$R1 1448
5 TraesCS6A01G163000 chr6B 216631376 216633479 2103 False 1420.000000 2590 89.510000 355 2753 2 chr6B.!!$F1 2398
6 TraesCS6A01G163000 chr1B 398962051 398962792 741 False 817.000000 817 86.927000 1017 1740 1 chr1B.!!$F2 723
7 TraesCS6A01G163000 chr1B 398839005 398840601 1596 True 485.333333 1086 85.802000 355 2412 3 chr1B.!!$R3 2057
8 TraesCS6A01G163000 chr7D 545652594 545653396 802 False 929.000000 929 87.427000 1877 2722 1 chr7D.!!$F4 845
9 TraesCS6A01G163000 chr7D 518768984 518769710 726 False 885.000000 885 88.996000 1001 1712 1 chr7D.!!$F1 711
10 TraesCS6A01G163000 chr7D 518774642 518775621 979 False 874.000000 874 83.096000 1720 2753 1 chr7D.!!$F2 1033
11 TraesCS6A01G163000 chr7D 545266194 545266879 685 True 815.000000 815 88.484000 1018 1687 1 chr7D.!!$R3 669
12 TraesCS6A01G163000 chr7D 509572392 509573803 1411 True 688.000000 688 76.678000 923 2361 1 chr7D.!!$R1 1438
13 TraesCS6A01G163000 chr7D 530110906 530111564 658 False 678.000000 678 85.414000 1022 1679 1 chr7D.!!$F3 657
14 TraesCS6A01G163000 chr7D 545646941 545648164 1223 False 597.000000 1077 85.905000 418 2024 2 chr7D.!!$F5 1606
15 TraesCS6A01G163000 chr7A 626991727 626992528 801 True 950.000000 950 88.433000 1017 1801 1 chr7A.!!$R2 784
16 TraesCS6A01G163000 chr7A 627231641 627232533 892 True 948.000000 948 86.139000 912 1800 1 chr7A.!!$R3 888
17 TraesCS6A01G163000 chr7A 628487251 628492196 4945 True 842.000000 856 83.808000 915 2024 2 chr7A.!!$R6 1109
18 TraesCS6A01G163000 chr7A 594434566 594435295 729 False 817.000000 817 87.278000 991 1703 1 chr7A.!!$F1 712
19 TraesCS6A01G163000 chr7A 594449126 594450104 978 False 800.000000 800 81.810000 1709 2753 1 chr7A.!!$F2 1044
20 TraesCS6A01G163000 chr7A 169954953 169958422 3469 True 759.500000 867 86.455500 924 2753 2 chr7A.!!$R4 1829
21 TraesCS6A01G163000 chr7A 628384986 628390147 5161 True 671.166667 1048 83.083000 355 1809 3 chr7A.!!$R5 1454
22 TraesCS6A01G163000 chr7A 628520570 628521329 759 False 429.400000 806 93.493000 355 1809 2 chr7A.!!$F3 1454
23 TraesCS6A01G163000 chr7A 628645621 628647834 2213 False 378.750000 870 90.609500 991 2753 4 chr7A.!!$F4 1762
24 TraesCS6A01G163000 chr5D 331837710 331839208 1498 False 423.933333 1002 90.036667 355 2452 3 chr5D.!!$F1 2097
25 TraesCS6A01G163000 chr7B 589937084 589937917 833 False 920.000000 920 86.629000 1877 2753 1 chr7B.!!$F5 876
26 TraesCS6A01G163000 chr7B 588822633 588823375 742 True 791.000000 791 86.126000 992 1740 1 chr7B.!!$R3 748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
626 627 0.032815 AAACGGGGAATTTTGTGGCG 59.967 50.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2035 7044 0.449388 GTAGTGGCAGATGCTTGCAC 59.551 55.0 4.59 4.83 45.86 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.642885 ACTGAGAGTAGTCTACATCTTGGC 59.357 45.833 12.54 2.60 30.97 4.52
24 25 3.954904 TGAGAGTAGTCTACATCTTGGCC 59.045 47.826 12.54 0.00 30.97 5.36
26 27 3.702045 AGAGTAGTCTACATCTTGGCCAC 59.298 47.826 3.88 0.00 0.00 5.01
28 29 0.108138 AGTCTACATCTTGGCCACGC 60.108 55.000 3.88 0.00 0.00 5.34
30 31 0.175760 TCTACATCTTGGCCACGCTC 59.824 55.000 3.88 0.00 0.00 5.03
31 32 0.108186 CTACATCTTGGCCACGCTCA 60.108 55.000 3.88 0.00 0.00 4.26
34 35 0.379669 CATCTTGGCCACGCTCATTC 59.620 55.000 3.88 0.00 0.00 2.67
35 36 0.254178 ATCTTGGCCACGCTCATTCT 59.746 50.000 3.88 0.00 0.00 2.40
36 37 0.391661 TCTTGGCCACGCTCATTCTC 60.392 55.000 3.88 0.00 0.00 2.87
38 39 2.166130 TTGGCCACGCTCATTCTCGA 62.166 55.000 3.88 0.00 0.00 4.04
40 41 1.493950 GGCCACGCTCATTCTCGATG 61.494 60.000 0.00 0.00 37.08 3.84
41 42 0.528466 GCCACGCTCATTCTCGATGA 60.528 55.000 0.00 0.00 42.42 2.92
42 43 1.871408 GCCACGCTCATTCTCGATGAT 60.871 52.381 0.00 0.00 43.59 2.45
43 44 2.057316 CCACGCTCATTCTCGATGATC 58.943 52.381 0.00 0.00 43.59 2.92
45 46 3.315418 CACGCTCATTCTCGATGATCAT 58.685 45.455 8.25 8.25 43.59 2.45
46 47 3.121445 CACGCTCATTCTCGATGATCATG 59.879 47.826 14.30 5.89 43.59 3.07
48 49 3.739810 CGCTCATTCTCGATGATCATGTT 59.260 43.478 14.30 0.00 43.59 2.71
51 52 5.558463 GCTCATTCTCGATGATCATGTTGTG 60.558 44.000 14.30 4.69 43.59 3.33
52 53 4.271776 TCATTCTCGATGATCATGTTGTGC 59.728 41.667 14.30 0.00 39.83 4.57
53 54 3.249986 TCTCGATGATCATGTTGTGCA 57.750 42.857 14.30 0.00 0.00 4.57
54 55 3.800531 TCTCGATGATCATGTTGTGCAT 58.199 40.909 14.30 0.00 38.60 3.96
55 56 7.267723 CATTCTCGATGATCATGTTGTGCATG 61.268 42.308 14.30 6.28 45.43 4.06
69 70 4.950434 TGTGCATGATCACACAAGTATG 57.050 40.909 14.82 1.05 43.48 2.39
70 71 3.127376 TGTGCATGATCACACAAGTATGC 59.873 43.478 14.82 10.83 43.48 3.14
73 74 4.399934 TGCATGATCACACAAGTATGCATT 59.600 37.500 3.54 0.00 43.95 3.56
75 76 6.263617 TGCATGATCACACAAGTATGCATTAT 59.736 34.615 3.54 0.00 43.95 1.28
76 77 6.581166 GCATGATCACACAAGTATGCATTATG 59.419 38.462 3.54 4.46 40.30 1.90
77 78 7.645402 CATGATCACACAAGTATGCATTATGT 58.355 34.615 3.54 5.16 0.00 2.29
78 79 8.776470 CATGATCACACAAGTATGCATTATGTA 58.224 33.333 3.54 0.00 0.00 2.29
398 399 3.826236 AACCATCGACGGATATACTCG 57.174 47.619 3.60 1.64 0.00 4.18
399 400 2.775890 ACCATCGACGGATATACTCGT 58.224 47.619 3.60 2.37 42.67 4.18
400 401 2.483106 ACCATCGACGGATATACTCGTG 59.517 50.000 3.60 0.00 39.88 4.35
401 402 2.740447 CCATCGACGGATATACTCGTGA 59.260 50.000 0.00 5.89 39.88 4.35
402 403 3.374367 CCATCGACGGATATACTCGTGAT 59.626 47.826 0.00 7.47 39.88 3.06
403 404 4.142665 CCATCGACGGATATACTCGTGATT 60.143 45.833 0.00 0.00 39.88 2.57
404 405 4.400036 TCGACGGATATACTCGTGATTG 57.600 45.455 6.88 0.00 39.88 2.67
405 406 3.811497 TCGACGGATATACTCGTGATTGT 59.189 43.478 6.88 0.00 39.88 2.71
406 407 4.274214 TCGACGGATATACTCGTGATTGTT 59.726 41.667 6.88 0.00 39.88 2.83
407 408 4.378910 CGACGGATATACTCGTGATTGTTG 59.621 45.833 6.88 0.00 39.88 3.33
408 409 4.049186 ACGGATATACTCGTGATTGTTGC 58.951 43.478 1.98 0.00 38.25 4.17
409 410 3.428870 CGGATATACTCGTGATTGTTGCC 59.571 47.826 0.00 0.00 0.00 4.52
410 411 3.746492 GGATATACTCGTGATTGTTGCCC 59.254 47.826 0.00 0.00 0.00 5.36
411 412 2.038387 ATACTCGTGATTGTTGCCCC 57.962 50.000 0.00 0.00 0.00 5.80
412 413 0.390603 TACTCGTGATTGTTGCCCCG 60.391 55.000 0.00 0.00 0.00 5.73
413 414 1.671054 CTCGTGATTGTTGCCCCGT 60.671 57.895 0.00 0.00 0.00 5.28
414 415 1.635663 CTCGTGATTGTTGCCCCGTC 61.636 60.000 0.00 0.00 0.00 4.79
415 416 1.671054 CGTGATTGTTGCCCCGTCT 60.671 57.895 0.00 0.00 0.00 4.18
416 417 1.635663 CGTGATTGTTGCCCCGTCTC 61.636 60.000 0.00 0.00 0.00 3.36
417 418 1.002624 TGATTGTTGCCCCGTCTCC 60.003 57.895 0.00 0.00 0.00 3.71
418 419 1.749258 GATTGTTGCCCCGTCTCCC 60.749 63.158 0.00 0.00 0.00 4.30
419 420 3.622060 ATTGTTGCCCCGTCTCCCG 62.622 63.158 0.00 0.00 0.00 5.14
427 428 3.441290 CCGTCTCCCGCGTCTCTT 61.441 66.667 4.92 0.00 34.38 2.85
428 429 2.100603 CGTCTCCCGCGTCTCTTC 59.899 66.667 4.92 0.00 0.00 2.87
429 430 2.400158 CGTCTCCCGCGTCTCTTCT 61.400 63.158 4.92 0.00 0.00 2.85
430 431 1.884444 GTCTCCCGCGTCTCTTCTT 59.116 57.895 4.92 0.00 0.00 2.52
431 432 0.244178 GTCTCCCGCGTCTCTTCTTT 59.756 55.000 4.92 0.00 0.00 2.52
432 433 0.526662 TCTCCCGCGTCTCTTCTTTC 59.473 55.000 4.92 0.00 0.00 2.62
433 434 0.528470 CTCCCGCGTCTCTTCTTTCT 59.472 55.000 4.92 0.00 0.00 2.52
434 435 0.966920 TCCCGCGTCTCTTCTTTCTT 59.033 50.000 4.92 0.00 0.00 2.52
435 436 1.071605 CCCGCGTCTCTTCTTTCTTG 58.928 55.000 4.92 0.00 0.00 3.02
436 437 0.440371 CCGCGTCTCTTCTTTCTTGC 59.560 55.000 4.92 0.00 0.00 4.01
437 438 1.423395 CGCGTCTCTTCTTTCTTGCT 58.577 50.000 0.00 0.00 0.00 3.91
438 439 1.388431 CGCGTCTCTTCTTTCTTGCTC 59.612 52.381 0.00 0.00 0.00 4.26
439 440 1.388431 GCGTCTCTTCTTTCTTGCTCG 59.612 52.381 0.00 0.00 0.00 5.03
440 441 1.388431 CGTCTCTTCTTTCTTGCTCGC 59.612 52.381 0.00 0.00 0.00 5.03
441 442 1.729517 GTCTCTTCTTTCTTGCTCGCC 59.270 52.381 0.00 0.00 0.00 5.54
442 443 1.082690 CTCTTCTTTCTTGCTCGCCC 58.917 55.000 0.00 0.00 0.00 6.13
443 444 0.321653 TCTTCTTTCTTGCTCGCCCC 60.322 55.000 0.00 0.00 0.00 5.80
444 445 1.639298 CTTCTTTCTTGCTCGCCCCG 61.639 60.000 0.00 0.00 0.00 5.73
445 446 2.358737 CTTTCTTGCTCGCCCCGT 60.359 61.111 0.00 0.00 0.00 5.28
446 447 2.358247 TTTCTTGCTCGCCCCGTC 60.358 61.111 0.00 0.00 0.00 4.79
447 448 2.788191 CTTTCTTGCTCGCCCCGTCT 62.788 60.000 0.00 0.00 0.00 4.18
448 449 2.781595 TTTCTTGCTCGCCCCGTCTC 62.782 60.000 0.00 0.00 0.00 3.36
449 450 4.821589 CTTGCTCGCCCCGTCTCC 62.822 72.222 0.00 0.00 0.00 3.71
456 457 4.097361 GCCCCGTCTCCCCAACTC 62.097 72.222 0.00 0.00 0.00 3.01
457 458 3.400054 CCCCGTCTCCCCAACTCC 61.400 72.222 0.00 0.00 0.00 3.85
458 459 2.284699 CCCGTCTCCCCAACTCCT 60.285 66.667 0.00 0.00 0.00 3.69
459 460 2.660064 CCCGTCTCCCCAACTCCTG 61.660 68.421 0.00 0.00 0.00 3.86
460 461 1.609501 CCGTCTCCCCAACTCCTGA 60.610 63.158 0.00 0.00 0.00 3.86
461 462 0.978146 CCGTCTCCCCAACTCCTGAT 60.978 60.000 0.00 0.00 0.00 2.90
462 463 0.461961 CGTCTCCCCAACTCCTGATC 59.538 60.000 0.00 0.00 0.00 2.92
463 464 0.833949 GTCTCCCCAACTCCTGATCC 59.166 60.000 0.00 0.00 0.00 3.36
464 465 0.417437 TCTCCCCAACTCCTGATCCA 59.583 55.000 0.00 0.00 0.00 3.41
465 466 1.010046 TCTCCCCAACTCCTGATCCAT 59.990 52.381 0.00 0.00 0.00 3.41
466 467 1.419387 CTCCCCAACTCCTGATCCATC 59.581 57.143 0.00 0.00 0.00 3.51
467 468 0.475906 CCCCAACTCCTGATCCATCC 59.524 60.000 0.00 0.00 0.00 3.51
468 469 0.107456 CCCAACTCCTGATCCATCCG 59.893 60.000 0.00 0.00 0.00 4.18
469 470 1.123077 CCAACTCCTGATCCATCCGA 58.877 55.000 0.00 0.00 0.00 4.55
470 471 1.486310 CCAACTCCTGATCCATCCGAA 59.514 52.381 0.00 0.00 0.00 4.30
471 472 2.105477 CCAACTCCTGATCCATCCGAAT 59.895 50.000 0.00 0.00 0.00 3.34
472 473 3.397482 CAACTCCTGATCCATCCGAATC 58.603 50.000 0.00 0.00 0.00 2.52
473 474 2.969628 ACTCCTGATCCATCCGAATCT 58.030 47.619 0.00 0.00 0.00 2.40
474 475 2.632028 ACTCCTGATCCATCCGAATCTG 59.368 50.000 0.00 0.00 0.00 2.90
475 476 2.896044 CTCCTGATCCATCCGAATCTGA 59.104 50.000 0.00 0.00 0.00 3.27
476 477 3.514539 TCCTGATCCATCCGAATCTGAT 58.485 45.455 0.00 0.00 0.00 2.90
477 478 3.513119 TCCTGATCCATCCGAATCTGATC 59.487 47.826 0.00 0.00 33.96 2.92
478 479 3.509740 CTGATCCATCCGAATCTGATCG 58.490 50.000 0.00 0.00 42.37 3.69
485 486 3.902515 CGAATCTGATCGGCATCCT 57.097 52.632 0.00 0.00 39.12 3.24
486 487 1.707632 CGAATCTGATCGGCATCCTC 58.292 55.000 0.00 0.00 39.12 3.71
487 488 1.000171 CGAATCTGATCGGCATCCTCA 60.000 52.381 0.00 0.00 39.12 3.86
488 489 2.353505 CGAATCTGATCGGCATCCTCAT 60.354 50.000 0.00 0.00 39.12 2.90
489 490 3.260740 GAATCTGATCGGCATCCTCATC 58.739 50.000 0.00 0.00 0.00 2.92
490 491 0.972134 TCTGATCGGCATCCTCATCC 59.028 55.000 0.00 0.00 0.00 3.51
491 492 0.975135 CTGATCGGCATCCTCATCCT 59.025 55.000 0.00 0.00 0.00 3.24
492 493 0.972134 TGATCGGCATCCTCATCCTC 59.028 55.000 0.00 0.00 0.00 3.71
493 494 0.248843 GATCGGCATCCTCATCCTCC 59.751 60.000 0.00 0.00 0.00 4.30
494 495 1.197430 ATCGGCATCCTCATCCTCCC 61.197 60.000 0.00 0.00 0.00 4.30
495 496 1.840650 CGGCATCCTCATCCTCCCT 60.841 63.158 0.00 0.00 0.00 4.20
496 497 1.414061 CGGCATCCTCATCCTCCCTT 61.414 60.000 0.00 0.00 0.00 3.95
497 498 0.399833 GGCATCCTCATCCTCCCTTC 59.600 60.000 0.00 0.00 0.00 3.46
498 499 0.399833 GCATCCTCATCCTCCCTTCC 59.600 60.000 0.00 0.00 0.00 3.46
499 500 0.683973 CATCCTCATCCTCCCTTCCG 59.316 60.000 0.00 0.00 0.00 4.30
500 501 1.124477 ATCCTCATCCTCCCTTCCGC 61.124 60.000 0.00 0.00 0.00 5.54
501 502 2.812619 CCTCATCCTCCCTTCCGCC 61.813 68.421 0.00 0.00 0.00 6.13
502 503 3.154473 TCATCCTCCCTTCCGCCG 61.154 66.667 0.00 0.00 0.00 6.46
503 504 4.918201 CATCCTCCCTTCCGCCGC 62.918 72.222 0.00 0.00 0.00 6.53
517 518 4.514577 CCGCCGGATCGTTGCTCT 62.515 66.667 5.05 0.00 0.00 4.09
518 519 2.956964 CGCCGGATCGTTGCTCTC 60.957 66.667 5.05 0.00 0.00 3.20
519 520 2.956964 GCCGGATCGTTGCTCTCG 60.957 66.667 5.05 0.00 0.00 4.04
520 521 2.956964 CCGGATCGTTGCTCTCGC 60.957 66.667 0.00 0.00 0.00 5.03
521 522 3.315521 CGGATCGTTGCTCTCGCG 61.316 66.667 0.00 0.00 39.65 5.87
522 523 2.102357 GGATCGTTGCTCTCGCGA 59.898 61.111 9.26 9.26 39.65 5.87
523 524 2.224885 GGATCGTTGCTCTCGCGAC 61.225 63.158 3.71 0.00 45.32 5.19
524 525 1.226435 GATCGTTGCTCTCGCGACT 60.226 57.895 3.71 0.00 46.36 4.18
525 526 1.197368 GATCGTTGCTCTCGCGACTC 61.197 60.000 3.71 0.00 46.36 3.36
526 527 2.600122 ATCGTTGCTCTCGCGACTCC 62.600 60.000 3.71 0.00 46.36 3.85
527 528 2.876645 GTTGCTCTCGCGACTCCG 60.877 66.667 3.71 0.00 45.32 4.63
562 563 4.415332 CCGCGCACTGGACTACGT 62.415 66.667 8.75 0.00 0.00 3.57
563 564 2.481919 CGCGCACTGGACTACGTA 59.518 61.111 8.75 0.00 0.00 3.57
564 565 1.063649 CGCGCACTGGACTACGTAT 59.936 57.895 8.75 0.00 0.00 3.06
565 566 1.200474 CGCGCACTGGACTACGTATG 61.200 60.000 8.75 0.00 0.00 2.39
566 567 1.480219 GCGCACTGGACTACGTATGC 61.480 60.000 0.30 6.53 0.00 3.14
567 568 0.870307 CGCACTGGACTACGTATGCC 60.870 60.000 10.17 8.52 0.00 4.40
568 569 0.870307 GCACTGGACTACGTATGCCG 60.870 60.000 5.47 5.24 44.03 5.69
569 570 0.870307 CACTGGACTACGTATGCCGC 60.870 60.000 0.00 0.00 41.42 6.53
570 571 1.657487 CTGGACTACGTATGCCGCG 60.657 63.158 0.00 0.00 41.42 6.46
571 572 3.028590 GGACTACGTATGCCGCGC 61.029 66.667 0.00 0.00 41.42 6.86
572 573 3.028590 GACTACGTATGCCGCGCC 61.029 66.667 0.00 0.00 41.42 6.53
573 574 4.580551 ACTACGTATGCCGCGCCC 62.581 66.667 0.00 0.00 41.42 6.13
586 587 2.434185 CGCCCGCTGAAGCAACTA 60.434 61.111 2.79 0.00 42.21 2.24
587 588 1.815421 CGCCCGCTGAAGCAACTAT 60.815 57.895 2.79 0.00 42.21 2.12
588 589 1.369091 CGCCCGCTGAAGCAACTATT 61.369 55.000 2.79 0.00 42.21 1.73
589 590 0.378610 GCCCGCTGAAGCAACTATTC 59.621 55.000 2.79 0.00 42.21 1.75
590 591 1.017387 CCCGCTGAAGCAACTATTCC 58.983 55.000 2.79 0.00 42.21 3.01
591 592 0.652592 CCGCTGAAGCAACTATTCCG 59.347 55.000 2.79 0.00 42.21 4.30
592 593 0.652592 CGCTGAAGCAACTATTCCGG 59.347 55.000 0.00 0.00 42.21 5.14
593 594 1.739067 GCTGAAGCAACTATTCCGGT 58.261 50.000 0.00 0.00 41.59 5.28
594 595 2.084546 GCTGAAGCAACTATTCCGGTT 58.915 47.619 0.00 0.00 41.59 4.44
595 596 2.159517 GCTGAAGCAACTATTCCGGTTG 60.160 50.000 0.00 0.00 44.60 3.77
599 600 3.967734 CAACTATTCCGGTTGCACG 57.032 52.632 0.00 0.00 37.76 5.34
600 601 0.179200 CAACTATTCCGGTTGCACGC 60.179 55.000 0.00 0.00 37.76 5.34
601 602 1.632046 AACTATTCCGGTTGCACGCG 61.632 55.000 3.53 3.53 0.00 6.01
602 603 2.048033 TATTCCGGTTGCACGCGT 60.048 55.556 5.58 5.58 0.00 6.01
603 604 2.291508 CTATTCCGGTTGCACGCGTG 62.292 60.000 34.01 34.01 0.00 5.34
616 617 3.658048 GCGTGCTAAAACGGGGAA 58.342 55.556 0.00 0.00 43.75 3.97
617 618 2.177044 GCGTGCTAAAACGGGGAAT 58.823 52.632 0.00 0.00 43.75 3.01
618 619 0.524414 GCGTGCTAAAACGGGGAATT 59.476 50.000 0.00 0.00 43.75 2.17
619 620 1.068125 GCGTGCTAAAACGGGGAATTT 60.068 47.619 0.00 0.00 43.75 1.82
620 621 2.608506 GCGTGCTAAAACGGGGAATTTT 60.609 45.455 0.00 0.00 43.75 1.82
621 622 2.983803 CGTGCTAAAACGGGGAATTTTG 59.016 45.455 0.00 0.00 39.89 2.44
622 623 3.551250 CGTGCTAAAACGGGGAATTTTGT 60.551 43.478 0.00 0.00 39.89 2.83
623 624 3.738791 GTGCTAAAACGGGGAATTTTGTG 59.261 43.478 0.00 0.00 31.79 3.33
624 625 3.243907 TGCTAAAACGGGGAATTTTGTGG 60.244 43.478 0.00 0.00 31.79 4.17
625 626 2.248280 AAAACGGGGAATTTTGTGGC 57.752 45.000 0.00 0.00 0.00 5.01
626 627 0.032815 AAACGGGGAATTTTGTGGCG 59.967 50.000 0.00 0.00 0.00 5.69
627 628 2.126110 CGGGGAATTTTGTGGCGC 60.126 61.111 0.00 0.00 0.00 6.53
628 629 2.126110 GGGGAATTTTGTGGCGCG 60.126 61.111 0.00 0.00 0.00 6.86
629 630 2.126110 GGGAATTTTGTGGCGCGG 60.126 61.111 8.83 0.00 0.00 6.46
630 631 2.648454 GGAATTTTGTGGCGCGGT 59.352 55.556 8.83 0.00 0.00 5.68
631 632 1.732683 GGAATTTTGTGGCGCGGTG 60.733 57.895 8.83 0.00 0.00 4.94
632 633 2.355718 AATTTTGTGGCGCGGTGC 60.356 55.556 8.83 4.64 45.38 5.01
633 634 2.747507 GAATTTTGTGGCGCGGTGCT 62.748 55.000 13.85 0.00 45.43 4.40
634 635 1.519751 AATTTTGTGGCGCGGTGCTA 61.520 50.000 13.85 4.14 45.43 3.49
635 636 1.922135 ATTTTGTGGCGCGGTGCTAG 61.922 55.000 13.85 0.00 45.43 3.42
636 637 3.818121 TTTGTGGCGCGGTGCTAGT 62.818 57.895 13.85 0.00 45.43 2.57
637 638 3.818121 TTGTGGCGCGGTGCTAGTT 62.818 57.895 13.85 0.00 45.43 2.24
638 639 3.047877 GTGGCGCGGTGCTAGTTT 61.048 61.111 13.85 0.00 45.43 2.66
639 640 3.047280 TGGCGCGGTGCTAGTTTG 61.047 61.111 13.85 0.00 45.43 2.93
640 641 2.740826 GGCGCGGTGCTAGTTTGA 60.741 61.111 13.85 0.00 45.43 2.69
641 642 2.474712 GCGCGGTGCTAGTTTGAC 59.525 61.111 8.83 0.00 41.73 3.18
642 643 2.769617 CGCGGTGCTAGTTTGACG 59.230 61.111 0.00 0.00 0.00 4.35
643 644 2.474712 GCGGTGCTAGTTTGACGC 59.525 61.111 0.00 0.00 40.19 5.19
644 645 2.769617 CGGTGCTAGTTTGACGCG 59.230 61.111 3.53 3.53 0.00 6.01
645 646 2.474712 GGTGCTAGTTTGACGCGC 59.525 61.111 5.73 0.00 0.00 6.86
646 647 2.474712 GTGCTAGTTTGACGCGCC 59.525 61.111 5.73 0.00 0.00 6.53
647 648 2.027625 GTGCTAGTTTGACGCGCCT 61.028 57.895 5.73 0.00 0.00 5.52
648 649 2.027073 TGCTAGTTTGACGCGCCTG 61.027 57.895 5.73 0.00 0.00 4.85
649 650 2.027625 GCTAGTTTGACGCGCCTGT 61.028 57.895 5.73 0.00 0.00 4.00
650 651 1.566018 GCTAGTTTGACGCGCCTGTT 61.566 55.000 5.73 0.00 0.00 3.16
651 652 0.163788 CTAGTTTGACGCGCCTGTTG 59.836 55.000 5.73 0.00 0.00 3.33
652 653 1.225376 TAGTTTGACGCGCCTGTTGG 61.225 55.000 5.73 0.00 0.00 3.77
653 654 2.203084 TTTGACGCGCCTGTTGGA 60.203 55.556 5.73 0.00 34.57 3.53
654 655 2.250939 TTTGACGCGCCTGTTGGAG 61.251 57.895 5.73 0.00 36.16 3.86
655 656 2.652382 TTTGACGCGCCTGTTGGAGA 62.652 55.000 5.73 0.00 34.95 3.71
656 657 2.125512 GACGCGCCTGTTGGAGAT 60.126 61.111 5.73 0.00 34.95 2.75
657 658 2.434884 ACGCGCCTGTTGGAGATG 60.435 61.111 5.73 0.00 34.95 2.90
658 659 3.869272 CGCGCCTGTTGGAGATGC 61.869 66.667 0.00 0.00 34.95 3.91
659 660 2.437359 GCGCCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 34.95 3.79
660 661 2.467826 GCGCCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 34.95 4.26
661 662 1.220206 CGCCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 34.95 4.09
662 663 0.392193 CGCCTGTTGGAGATGCTCTT 60.392 55.000 0.00 0.00 34.95 2.85
663 664 1.134699 CGCCTGTTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 34.95 2.10
664 665 2.559440 GCCTGTTGGAGATGCTCTTAG 58.441 52.381 0.00 0.00 34.57 2.18
665 666 2.169352 GCCTGTTGGAGATGCTCTTAGA 59.831 50.000 0.00 0.00 34.57 2.10
666 667 3.791245 CCTGTTGGAGATGCTCTTAGAC 58.209 50.000 0.00 0.00 34.57 2.59
667 668 3.431486 CCTGTTGGAGATGCTCTTAGACC 60.431 52.174 0.00 0.00 34.57 3.85
668 669 2.501723 TGTTGGAGATGCTCTTAGACCC 59.498 50.000 0.00 0.00 0.00 4.46
669 670 2.769095 GTTGGAGATGCTCTTAGACCCT 59.231 50.000 0.00 0.00 0.00 4.34
670 671 3.961408 GTTGGAGATGCTCTTAGACCCTA 59.039 47.826 0.00 0.00 0.00 3.53
671 672 4.477536 TGGAGATGCTCTTAGACCCTAT 57.522 45.455 0.00 0.00 0.00 2.57
672 673 4.820775 TGGAGATGCTCTTAGACCCTATT 58.179 43.478 0.00 0.00 0.00 1.73
673 674 4.835615 TGGAGATGCTCTTAGACCCTATTC 59.164 45.833 0.00 0.00 0.00 1.75
674 675 5.083821 GGAGATGCTCTTAGACCCTATTCT 58.916 45.833 0.00 0.00 0.00 2.40
675 676 5.542251 GGAGATGCTCTTAGACCCTATTCTT 59.458 44.000 0.00 0.00 0.00 2.52
676 677 6.042666 GGAGATGCTCTTAGACCCTATTCTTT 59.957 42.308 0.00 0.00 0.00 2.52
677 678 7.419634 GGAGATGCTCTTAGACCCTATTCTTTT 60.420 40.741 0.00 0.00 0.00 2.27
678 679 7.278875 AGATGCTCTTAGACCCTATTCTTTTG 58.721 38.462 0.00 0.00 0.00 2.44
679 680 5.745227 TGCTCTTAGACCCTATTCTTTTGG 58.255 41.667 0.00 0.00 0.00 3.28
680 681 4.576873 GCTCTTAGACCCTATTCTTTTGGC 59.423 45.833 0.00 0.00 0.00 4.52
681 682 5.745227 CTCTTAGACCCTATTCTTTTGGCA 58.255 41.667 0.00 0.00 0.00 4.92
682 683 6.134535 TCTTAGACCCTATTCTTTTGGCAA 57.865 37.500 0.00 0.00 0.00 4.52
683 684 5.944007 TCTTAGACCCTATTCTTTTGGCAAC 59.056 40.000 0.00 0.00 0.00 4.17
684 685 4.388577 AGACCCTATTCTTTTGGCAACT 57.611 40.909 0.00 0.00 37.61 3.16
685 686 4.740902 AGACCCTATTCTTTTGGCAACTT 58.259 39.130 0.00 0.00 37.61 2.66
686 687 5.887754 AGACCCTATTCTTTTGGCAACTTA 58.112 37.500 0.00 0.00 37.61 2.24
687 688 6.494059 AGACCCTATTCTTTTGGCAACTTAT 58.506 36.000 0.00 0.00 37.61 1.73
688 689 6.378280 AGACCCTATTCTTTTGGCAACTTATG 59.622 38.462 0.00 0.00 37.61 1.90
689 690 5.422012 ACCCTATTCTTTTGGCAACTTATGG 59.578 40.000 0.00 0.00 37.61 2.74
690 691 5.422012 CCCTATTCTTTTGGCAACTTATGGT 59.578 40.000 0.00 0.00 37.61 3.55
691 692 6.332630 CCTATTCTTTTGGCAACTTATGGTG 58.667 40.000 0.00 0.00 37.61 4.17
692 693 4.599047 TTCTTTTGGCAACTTATGGTGG 57.401 40.909 0.00 0.00 37.61 4.61
693 694 3.571590 TCTTTTGGCAACTTATGGTGGT 58.428 40.909 0.00 0.00 37.61 4.16
694 695 3.964031 TCTTTTGGCAACTTATGGTGGTT 59.036 39.130 0.00 0.00 37.61 3.67
695 696 4.407296 TCTTTTGGCAACTTATGGTGGTTT 59.593 37.500 0.00 0.00 37.61 3.27
696 697 5.598830 TCTTTTGGCAACTTATGGTGGTTTA 59.401 36.000 0.00 0.00 37.61 2.01
697 698 6.268847 TCTTTTGGCAACTTATGGTGGTTTAT 59.731 34.615 0.00 0.00 37.61 1.40
698 699 5.398603 TTGGCAACTTATGGTGGTTTATG 57.601 39.130 0.00 0.00 37.61 1.90
699 700 3.766591 TGGCAACTTATGGTGGTTTATGG 59.233 43.478 0.00 0.00 37.61 2.74
700 701 3.767131 GGCAACTTATGGTGGTTTATGGT 59.233 43.478 0.00 0.00 0.00 3.55
701 702 4.951094 GGCAACTTATGGTGGTTTATGGTA 59.049 41.667 0.00 0.00 0.00 3.25
702 703 5.596772 GGCAACTTATGGTGGTTTATGGTAT 59.403 40.000 0.00 0.00 0.00 2.73
703 704 6.773685 GGCAACTTATGGTGGTTTATGGTATA 59.226 38.462 0.00 0.00 0.00 1.47
704 705 7.285858 GGCAACTTATGGTGGTTTATGGTATAA 59.714 37.037 0.00 0.00 0.00 0.98
705 706 8.688151 GCAACTTATGGTGGTTTATGGTATAAA 58.312 33.333 0.00 0.00 0.00 1.40
708 709 9.280174 ACTTATGGTGGTTTATGGTATAAATCG 57.720 33.333 0.00 0.00 0.00 3.34
709 710 9.280174 CTTATGGTGGTTTATGGTATAAATCGT 57.720 33.333 0.00 0.00 0.00 3.73
710 711 9.629878 TTATGGTGGTTTATGGTATAAATCGTT 57.370 29.630 0.00 0.00 0.00 3.85
711 712 7.941431 TGGTGGTTTATGGTATAAATCGTTT 57.059 32.000 0.00 0.00 0.00 3.60
712 713 7.987649 TGGTGGTTTATGGTATAAATCGTTTC 58.012 34.615 0.00 0.00 0.00 2.78
713 714 7.067251 TGGTGGTTTATGGTATAAATCGTTTCC 59.933 37.037 0.00 0.00 0.00 3.13
714 715 7.283807 GGTGGTTTATGGTATAAATCGTTTCCT 59.716 37.037 0.00 0.00 0.00 3.36
715 716 8.680001 GTGGTTTATGGTATAAATCGTTTCCTT 58.320 33.333 0.00 0.00 0.00 3.36
716 717 8.895737 TGGTTTATGGTATAAATCGTTTCCTTC 58.104 33.333 0.00 0.00 0.00 3.46
717 718 8.347771 GGTTTATGGTATAAATCGTTTCCTTCC 58.652 37.037 0.00 0.00 0.00 3.46
718 719 9.117183 GTTTATGGTATAAATCGTTTCCTTCCT 57.883 33.333 0.00 0.00 0.00 3.36
721 722 8.672823 ATGGTATAAATCGTTTCCTTCCTAAC 57.327 34.615 0.00 0.00 0.00 2.34
722 723 7.854337 TGGTATAAATCGTTTCCTTCCTAACT 58.146 34.615 0.00 0.00 0.00 2.24
723 724 8.323567 TGGTATAAATCGTTTCCTTCCTAACTT 58.676 33.333 0.00 0.00 0.00 2.66
724 725 9.822185 GGTATAAATCGTTTCCTTCCTAACTTA 57.178 33.333 0.00 0.00 0.00 2.24
737 738 9.112725 TCCTTCCTAACTTATTTTAATAACCGC 57.887 33.333 0.00 0.00 0.00 5.68
738 739 8.347771 CCTTCCTAACTTATTTTAATAACCGCC 58.652 37.037 0.00 0.00 0.00 6.13
739 740 7.806409 TCCTAACTTATTTTAATAACCGCCC 57.194 36.000 0.00 0.00 0.00 6.13
740 741 7.576403 TCCTAACTTATTTTAATAACCGCCCT 58.424 34.615 0.00 0.00 0.00 5.19
741 742 8.054572 TCCTAACTTATTTTAATAACCGCCCTT 58.945 33.333 0.00 0.00 0.00 3.95
742 743 8.132995 CCTAACTTATTTTAATAACCGCCCTTG 58.867 37.037 0.00 0.00 0.00 3.61
743 744 7.470935 AACTTATTTTAATAACCGCCCTTGT 57.529 32.000 0.00 0.00 0.00 3.16
744 745 7.470935 ACTTATTTTAATAACCGCCCTTGTT 57.529 32.000 0.00 0.00 0.00 2.83
745 746 8.578448 ACTTATTTTAATAACCGCCCTTGTTA 57.422 30.769 0.00 0.00 33.09 2.41
750 751 6.930667 TTAATAACCGCCCTTGTTATTCTC 57.069 37.500 10.64 0.00 43.94 2.87
788 789 2.704037 CAGCACGTACAAGTGTTGTTG 58.296 47.619 8.80 0.00 44.64 3.33
789 790 2.095213 CAGCACGTACAAGTGTTGTTGT 59.905 45.455 8.80 0.00 44.64 3.32
806 807 8.117988 GTGTTGTTGTCGTTGTAGAATTTCTTA 58.882 33.333 3.86 0.00 0.00 2.10
830 831 5.049405 ACTGAAACAAGTTGGAAAGATAGCG 60.049 40.000 7.96 0.00 0.00 4.26
831 832 4.819630 TGAAACAAGTTGGAAAGATAGCGT 59.180 37.500 7.96 0.00 0.00 5.07
832 833 5.049680 TGAAACAAGTTGGAAAGATAGCGTC 60.050 40.000 7.96 0.00 0.00 5.19
833 834 4.002906 ACAAGTTGGAAAGATAGCGTCA 57.997 40.909 7.96 0.00 0.00 4.35
834 835 4.579869 ACAAGTTGGAAAGATAGCGTCAT 58.420 39.130 7.96 0.00 0.00 3.06
844 845 3.974912 AGATAGCGTCATGTCATCACAG 58.025 45.455 0.00 0.00 35.41 3.66
859 860 6.942005 TGTCATCACAGTAAATGTCCAAATCT 59.058 34.615 0.00 0.00 41.41 2.40
898 899 1.588404 CTCGGATTCAAACCATCGACG 59.412 52.381 0.00 0.00 0.00 5.12
908 911 3.826236 AACCATCGACGGATATACTCG 57.174 47.619 3.60 1.64 0.00 4.18
1482 1639 1.342175 CCCTACCTCCGAAGAAGAGGT 60.342 57.143 16.14 16.14 36.72 3.85
1492 1649 0.894184 AAGAAGAGGTCAGCCGTCGA 60.894 55.000 0.00 0.00 40.50 4.20
1667 6021 1.741706 CTCAACTCATTGCGATGGCTT 59.258 47.619 14.12 2.98 40.82 4.35
1826 6556 2.363683 GCACCTAGCTGAGAAAAGCAT 58.636 47.619 0.00 0.00 46.08 3.79
1973 6977 4.478843 AGTGCGCATTATGATCACAATC 57.521 40.909 15.91 0.00 0.00 2.67
2035 7044 4.667519 TGGATCTGATCAGTCTGATGTG 57.332 45.455 20.20 11.78 41.42 3.21
2094 7124 6.604396 TGTTTTCATCTGATGTATGCTCCATT 59.396 34.615 16.66 0.00 0.00 3.16
2095 7125 6.628919 TTTCATCTGATGTATGCTCCATTG 57.371 37.500 16.66 0.00 0.00 2.82
2098 7128 5.761726 TCATCTGATGTATGCTCCATTGTTC 59.238 40.000 16.66 0.00 0.00 3.18
2100 7130 5.748402 TCTGATGTATGCTCCATTGTTCTT 58.252 37.500 0.00 0.00 0.00 2.52
2101 7131 6.182627 TCTGATGTATGCTCCATTGTTCTTT 58.817 36.000 0.00 0.00 0.00 2.52
2102 7132 6.660521 TCTGATGTATGCTCCATTGTTCTTTT 59.339 34.615 0.00 0.00 0.00 2.27
2103 7133 6.623486 TGATGTATGCTCCATTGTTCTTTTG 58.377 36.000 0.00 0.00 0.00 2.44
2106 7136 5.534278 TGTATGCTCCATTGTTCTTTTGTGA 59.466 36.000 0.00 0.00 0.00 3.58
2109 7139 6.647334 TGCTCCATTGTTCTTTTGTGAATA 57.353 33.333 0.00 0.00 0.00 1.75
2112 8167 8.801299 TGCTCCATTGTTCTTTTGTGAATAATA 58.199 29.630 0.00 0.00 36.23 0.98
2137 8195 4.261155 CCATGAATAATTACAGGCACACGG 60.261 45.833 0.00 0.00 0.00 4.94
2149 9023 1.782028 GCACACGGTTCCACCAAGAC 61.782 60.000 0.00 0.00 38.47 3.01
2266 9153 4.671377 TGCAGAATTTATTTGTCGCATCC 58.329 39.130 0.00 0.00 0.00 3.51
2363 9291 4.120792 TGCTGTCTGAAATTTTGCAACA 57.879 36.364 0.00 0.00 0.00 3.33
2412 9382 4.034510 GCTGTATATGCAGACCAGTTTCAC 59.965 45.833 23.23 0.00 38.70 3.18
2441 9411 9.529823 AATTAGCATATTCATTGACATGGATCT 57.470 29.630 0.00 2.50 30.40 2.75
2480 9454 3.373748 CAGTACAATTGCCGCAACTCATA 59.626 43.478 8.25 0.00 0.00 2.15
2583 10511 5.276395 CGTCGCAGAGAAAATACATACTTGG 60.276 44.000 0.00 0.00 36.95 3.61
2648 10577 7.959658 ATTCATTGACATAAATCCACTGGAA 57.040 32.000 0.66 0.00 34.34 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.427453 CGTGGCCAAGATGTAGACTACT 59.573 50.000 14.14 0.00 0.00 2.57
7 8 2.810650 CGTGGCCAAGATGTAGACTAC 58.189 52.381 14.14 5.62 0.00 2.73
10 11 0.108138 AGCGTGGCCAAGATGTAGAC 60.108 55.000 23.82 2.32 0.00 2.59
14 15 0.322816 AATGAGCGTGGCCAAGATGT 60.323 50.000 23.82 5.55 0.00 3.06
15 16 0.379669 GAATGAGCGTGGCCAAGATG 59.620 55.000 23.82 7.02 0.00 2.90
16 17 0.254178 AGAATGAGCGTGGCCAAGAT 59.746 50.000 23.82 17.49 0.00 2.40
17 18 0.391661 GAGAATGAGCGTGGCCAAGA 60.392 55.000 23.82 1.34 0.00 3.02
18 19 1.699656 CGAGAATGAGCGTGGCCAAG 61.700 60.000 15.06 15.06 0.00 3.61
19 20 1.741401 CGAGAATGAGCGTGGCCAA 60.741 57.895 7.24 0.00 0.00 4.52
20 21 1.960040 ATCGAGAATGAGCGTGGCCA 61.960 55.000 0.00 0.00 0.00 5.36
21 22 1.227380 ATCGAGAATGAGCGTGGCC 60.227 57.895 0.00 0.00 0.00 5.36
22 23 0.528466 TCATCGAGAATGAGCGTGGC 60.528 55.000 0.00 0.00 39.52 5.01
23 24 3.648528 TCATCGAGAATGAGCGTGG 57.351 52.632 0.00 0.00 39.52 4.94
28 29 9.109148 ATGCACAACATGATCATCGAGAATGAG 62.109 40.741 4.86 0.00 41.89 2.90
30 31 4.034742 TGCACAACATGATCATCGAGAATG 59.965 41.667 4.86 0.00 36.65 2.67
31 32 4.193865 TGCACAACATGATCATCGAGAAT 58.806 39.130 4.86 0.00 0.00 2.40
48 49 3.127376 GCATACTTGTGTGATCATGCACA 59.873 43.478 13.54 13.54 45.80 4.57
51 52 4.563337 ATGCATACTTGTGTGATCATGC 57.437 40.909 0.00 2.40 39.32 4.06
52 53 7.645402 ACATAATGCATACTTGTGTGATCATG 58.355 34.615 0.00 0.00 0.00 3.07
53 54 7.812690 ACATAATGCATACTTGTGTGATCAT 57.187 32.000 0.00 0.00 0.00 2.45
54 55 8.141835 GTACATAATGCATACTTGTGTGATCA 57.858 34.615 15.54 0.00 31.54 2.92
398 399 1.305930 GGAGACGGGGCAACAATCAC 61.306 60.000 0.00 0.00 39.74 3.06
399 400 1.002624 GGAGACGGGGCAACAATCA 60.003 57.895 0.00 0.00 39.74 2.57
400 401 1.749258 GGGAGACGGGGCAACAATC 60.749 63.158 0.00 0.00 39.74 2.67
401 402 2.355115 GGGAGACGGGGCAACAAT 59.645 61.111 0.00 0.00 39.74 2.71
402 403 4.323477 CGGGAGACGGGGCAACAA 62.323 66.667 0.00 0.00 39.42 2.83
410 411 3.398353 GAAGAGACGCGGGAGACGG 62.398 68.421 12.47 0.00 44.51 4.79
412 413 0.244178 AAAGAAGAGACGCGGGAGAC 59.756 55.000 12.47 0.00 0.00 3.36
413 414 0.526662 GAAAGAAGAGACGCGGGAGA 59.473 55.000 12.47 0.00 0.00 3.71
414 415 0.528470 AGAAAGAAGAGACGCGGGAG 59.472 55.000 12.47 0.00 0.00 4.30
415 416 0.966920 AAGAAAGAAGAGACGCGGGA 59.033 50.000 12.47 0.00 0.00 5.14
416 417 1.071605 CAAGAAAGAAGAGACGCGGG 58.928 55.000 12.47 0.00 0.00 6.13
417 418 0.440371 GCAAGAAAGAAGAGACGCGG 59.560 55.000 12.47 0.00 0.00 6.46
418 419 1.388431 GAGCAAGAAAGAAGAGACGCG 59.612 52.381 3.53 3.53 0.00 6.01
419 420 1.388431 CGAGCAAGAAAGAAGAGACGC 59.612 52.381 0.00 0.00 0.00 5.19
420 421 1.388431 GCGAGCAAGAAAGAAGAGACG 59.612 52.381 0.00 0.00 0.00 4.18
421 422 1.729517 GGCGAGCAAGAAAGAAGAGAC 59.270 52.381 0.00 0.00 0.00 3.36
422 423 1.338200 GGGCGAGCAAGAAAGAAGAGA 60.338 52.381 0.00 0.00 0.00 3.10
423 424 1.082690 GGGCGAGCAAGAAAGAAGAG 58.917 55.000 0.00 0.00 0.00 2.85
424 425 0.321653 GGGGCGAGCAAGAAAGAAGA 60.322 55.000 0.00 0.00 0.00 2.87
425 426 1.639298 CGGGGCGAGCAAGAAAGAAG 61.639 60.000 0.00 0.00 0.00 2.85
426 427 1.671054 CGGGGCGAGCAAGAAAGAA 60.671 57.895 0.00 0.00 0.00 2.52
427 428 2.047274 CGGGGCGAGCAAGAAAGA 60.047 61.111 0.00 0.00 0.00 2.52
428 429 2.358737 ACGGGGCGAGCAAGAAAG 60.359 61.111 0.00 0.00 0.00 2.62
429 430 2.358247 GACGGGGCGAGCAAGAAA 60.358 61.111 0.00 0.00 0.00 2.52
430 431 3.296709 GAGACGGGGCGAGCAAGAA 62.297 63.158 0.00 0.00 0.00 2.52
431 432 3.760035 GAGACGGGGCGAGCAAGA 61.760 66.667 0.00 0.00 0.00 3.02
432 433 4.821589 GGAGACGGGGCGAGCAAG 62.822 72.222 0.00 0.00 0.00 4.01
439 440 4.097361 GAGTTGGGGAGACGGGGC 62.097 72.222 0.00 0.00 0.00 5.80
440 441 3.400054 GGAGTTGGGGAGACGGGG 61.400 72.222 0.00 0.00 0.00 5.73
441 442 2.284699 AGGAGTTGGGGAGACGGG 60.285 66.667 0.00 0.00 0.00 5.28
442 443 0.978146 ATCAGGAGTTGGGGAGACGG 60.978 60.000 0.00 0.00 0.00 4.79
443 444 0.461961 GATCAGGAGTTGGGGAGACG 59.538 60.000 0.00 0.00 0.00 4.18
444 445 0.833949 GGATCAGGAGTTGGGGAGAC 59.166 60.000 0.00 0.00 0.00 3.36
445 446 0.417437 TGGATCAGGAGTTGGGGAGA 59.583 55.000 0.00 0.00 0.00 3.71
446 447 1.419387 GATGGATCAGGAGTTGGGGAG 59.581 57.143 0.00 0.00 0.00 4.30
447 448 1.511613 GATGGATCAGGAGTTGGGGA 58.488 55.000 0.00 0.00 0.00 4.81
448 449 0.475906 GGATGGATCAGGAGTTGGGG 59.524 60.000 0.00 0.00 0.00 4.96
449 450 0.107456 CGGATGGATCAGGAGTTGGG 59.893 60.000 0.00 0.00 0.00 4.12
450 451 1.123077 TCGGATGGATCAGGAGTTGG 58.877 55.000 0.00 0.00 0.00 3.77
451 452 2.988010 TTCGGATGGATCAGGAGTTG 57.012 50.000 0.00 0.00 0.00 3.16
452 453 3.070734 CAGATTCGGATGGATCAGGAGTT 59.929 47.826 0.00 0.00 0.00 3.01
453 454 2.632028 CAGATTCGGATGGATCAGGAGT 59.368 50.000 0.00 0.00 0.00 3.85
454 455 2.896044 TCAGATTCGGATGGATCAGGAG 59.104 50.000 0.00 0.00 0.00 3.69
455 456 2.962859 TCAGATTCGGATGGATCAGGA 58.037 47.619 0.00 0.00 0.00 3.86
456 457 3.675502 CGATCAGATTCGGATGGATCAGG 60.676 52.174 12.92 0.00 35.29 3.86
457 458 3.509740 CGATCAGATTCGGATGGATCAG 58.490 50.000 12.92 4.92 35.29 2.90
458 459 3.582714 CGATCAGATTCGGATGGATCA 57.417 47.619 12.92 0.00 35.29 2.92
467 468 1.000171 TGAGGATGCCGATCAGATTCG 60.000 52.381 0.00 0.00 38.83 3.34
468 469 2.827800 TGAGGATGCCGATCAGATTC 57.172 50.000 0.00 0.00 0.00 2.52
469 470 2.027377 GGATGAGGATGCCGATCAGATT 60.027 50.000 0.00 0.00 0.00 2.40
470 471 1.554160 GGATGAGGATGCCGATCAGAT 59.446 52.381 0.00 0.00 0.00 2.90
471 472 0.972134 GGATGAGGATGCCGATCAGA 59.028 55.000 0.00 0.00 0.00 3.27
472 473 0.975135 AGGATGAGGATGCCGATCAG 59.025 55.000 0.00 0.00 0.00 2.90
473 474 0.972134 GAGGATGAGGATGCCGATCA 59.028 55.000 0.00 0.00 0.00 2.92
474 475 0.248843 GGAGGATGAGGATGCCGATC 59.751 60.000 0.00 0.00 0.00 3.69
475 476 1.197430 GGGAGGATGAGGATGCCGAT 61.197 60.000 0.00 0.00 0.00 4.18
476 477 1.838846 GGGAGGATGAGGATGCCGA 60.839 63.158 0.00 0.00 0.00 5.54
477 478 1.414061 AAGGGAGGATGAGGATGCCG 61.414 60.000 0.00 0.00 0.00 5.69
478 479 0.399833 GAAGGGAGGATGAGGATGCC 59.600 60.000 0.00 0.00 0.00 4.40
479 480 0.399833 GGAAGGGAGGATGAGGATGC 59.600 60.000 0.00 0.00 0.00 3.91
480 481 0.683973 CGGAAGGGAGGATGAGGATG 59.316 60.000 0.00 0.00 0.00 3.51
481 482 1.124477 GCGGAAGGGAGGATGAGGAT 61.124 60.000 0.00 0.00 0.00 3.24
482 483 1.762460 GCGGAAGGGAGGATGAGGA 60.762 63.158 0.00 0.00 0.00 3.71
483 484 2.812619 GGCGGAAGGGAGGATGAGG 61.813 68.421 0.00 0.00 0.00 3.86
484 485 2.825264 GGCGGAAGGGAGGATGAG 59.175 66.667 0.00 0.00 0.00 2.90
485 486 3.154473 CGGCGGAAGGGAGGATGA 61.154 66.667 0.00 0.00 0.00 2.92
486 487 4.918201 GCGGCGGAAGGGAGGATG 62.918 72.222 9.78 0.00 0.00 3.51
500 501 4.514577 AGAGCAACGATCCGGCGG 62.515 66.667 22.51 22.51 35.12 6.13
501 502 2.956964 GAGAGCAACGATCCGGCG 60.957 66.667 0.00 0.00 37.29 6.46
502 503 2.956964 CGAGAGCAACGATCCGGC 60.957 66.667 0.00 0.00 0.00 6.13
545 546 2.332362 ATACGTAGTCCAGTGCGCGG 62.332 60.000 8.83 0.00 43.93 6.46
546 547 1.063649 ATACGTAGTCCAGTGCGCG 59.936 57.895 0.00 0.00 43.93 6.86
547 548 1.480219 GCATACGTAGTCCAGTGCGC 61.480 60.000 0.00 0.00 43.93 6.09
548 549 0.870307 GGCATACGTAGTCCAGTGCG 60.870 60.000 9.72 0.00 43.93 5.34
549 550 0.870307 CGGCATACGTAGTCCAGTGC 60.870 60.000 14.03 11.17 43.93 4.40
550 551 0.870307 GCGGCATACGTAGTCCAGTG 60.870 60.000 14.03 2.64 43.93 3.66
551 552 1.436336 GCGGCATACGTAGTCCAGT 59.564 57.895 14.03 0.00 43.93 4.00
552 553 1.657487 CGCGGCATACGTAGTCCAG 60.657 63.158 14.03 8.94 43.93 3.86
553 554 2.410060 CGCGGCATACGTAGTCCA 59.590 61.111 14.03 0.00 43.93 4.02
554 555 3.028590 GCGCGGCATACGTAGTCC 61.029 66.667 8.83 3.64 43.93 3.85
555 556 3.028590 GGCGCGGCATACGTAGTC 61.029 66.667 29.32 0.00 43.93 2.59
556 557 4.580551 GGGCGCGGCATACGTAGT 62.581 66.667 34.30 0.00 46.52 2.73
569 570 1.369091 AATAGTTGCTTCAGCGGGCG 61.369 55.000 0.00 0.00 45.83 6.13
570 571 0.378610 GAATAGTTGCTTCAGCGGGC 59.621 55.000 0.00 0.00 45.83 6.13
571 572 1.017387 GGAATAGTTGCTTCAGCGGG 58.983 55.000 0.00 0.00 45.83 6.13
572 573 0.652592 CGGAATAGTTGCTTCAGCGG 59.347 55.000 0.00 0.00 45.83 5.52
573 574 0.652592 CCGGAATAGTTGCTTCAGCG 59.347 55.000 0.00 0.00 45.83 5.18
574 575 1.739067 ACCGGAATAGTTGCTTCAGC 58.261 50.000 9.46 0.00 42.50 4.26
575 576 3.747099 CAACCGGAATAGTTGCTTCAG 57.253 47.619 9.46 0.00 38.31 3.02
581 582 0.179200 GCGTGCAACCGGAATAGTTG 60.179 55.000 9.46 2.17 45.92 3.16
582 583 1.632046 CGCGTGCAACCGGAATAGTT 61.632 55.000 9.46 0.00 0.00 2.24
583 584 2.098233 CGCGTGCAACCGGAATAGT 61.098 57.895 9.46 0.00 0.00 2.12
584 585 2.098233 ACGCGTGCAACCGGAATAG 61.098 57.895 12.93 0.00 35.33 1.73
585 586 2.048033 ACGCGTGCAACCGGAATA 60.048 55.556 12.93 0.00 35.33 1.75
586 587 3.722295 CACGCGTGCAACCGGAAT 61.722 61.111 28.16 0.00 35.33 3.01
596 597 2.172419 CCCGTTTTAGCACGCGTG 59.828 61.111 34.01 34.01 38.93 5.34
597 598 2.992607 TTCCCCGTTTTAGCACGCGT 62.993 55.000 5.58 5.58 38.93 6.01
598 599 1.641123 ATTCCCCGTTTTAGCACGCG 61.641 55.000 3.53 3.53 38.93 6.01
599 600 0.524414 AATTCCCCGTTTTAGCACGC 59.476 50.000 0.00 0.00 38.93 5.34
600 601 2.983803 CAAAATTCCCCGTTTTAGCACG 59.016 45.455 0.00 0.00 40.02 5.34
601 602 3.738791 CACAAAATTCCCCGTTTTAGCAC 59.261 43.478 0.00 0.00 0.00 4.40
602 603 3.243907 CCACAAAATTCCCCGTTTTAGCA 60.244 43.478 0.00 0.00 0.00 3.49
603 604 3.322369 CCACAAAATTCCCCGTTTTAGC 58.678 45.455 0.00 0.00 0.00 3.09
604 605 3.322369 GCCACAAAATTCCCCGTTTTAG 58.678 45.455 0.00 0.00 0.00 1.85
605 606 2.288273 CGCCACAAAATTCCCCGTTTTA 60.288 45.455 0.00 0.00 0.00 1.52
606 607 1.539280 CGCCACAAAATTCCCCGTTTT 60.539 47.619 0.00 0.00 0.00 2.43
607 608 0.032815 CGCCACAAAATTCCCCGTTT 59.967 50.000 0.00 0.00 0.00 3.60
608 609 1.663173 CGCCACAAAATTCCCCGTT 59.337 52.632 0.00 0.00 0.00 4.44
609 610 2.926420 GCGCCACAAAATTCCCCGT 61.926 57.895 0.00 0.00 0.00 5.28
610 611 2.126110 GCGCCACAAAATTCCCCG 60.126 61.111 0.00 0.00 0.00 5.73
611 612 2.126110 CGCGCCACAAAATTCCCC 60.126 61.111 0.00 0.00 0.00 4.81
612 613 2.126110 CCGCGCCACAAAATTCCC 60.126 61.111 0.00 0.00 0.00 3.97
613 614 1.732683 CACCGCGCCACAAAATTCC 60.733 57.895 0.00 0.00 0.00 3.01
614 615 2.371923 GCACCGCGCCACAAAATTC 61.372 57.895 0.00 0.00 32.94 2.17
615 616 1.519751 TAGCACCGCGCCACAAAATT 61.520 50.000 0.00 0.00 44.04 1.82
616 617 1.922135 CTAGCACCGCGCCACAAAAT 61.922 55.000 0.00 0.00 44.04 1.82
617 618 2.592001 TAGCACCGCGCCACAAAA 60.592 55.556 0.00 0.00 44.04 2.44
618 619 3.047280 CTAGCACCGCGCCACAAA 61.047 61.111 0.00 0.00 44.04 2.83
619 620 3.818121 AACTAGCACCGCGCCACAA 62.818 57.895 0.00 0.00 44.04 3.33
620 621 3.818121 AAACTAGCACCGCGCCACA 62.818 57.895 0.00 0.00 44.04 4.17
621 622 3.047877 AAACTAGCACCGCGCCAC 61.048 61.111 0.00 0.00 44.04 5.01
622 623 3.047280 CAAACTAGCACCGCGCCA 61.047 61.111 0.00 0.00 44.04 5.69
623 624 2.740826 TCAAACTAGCACCGCGCC 60.741 61.111 0.00 0.00 44.04 6.53
624 625 2.474712 GTCAAACTAGCACCGCGC 59.525 61.111 0.00 0.00 42.91 6.86
625 626 2.769617 CGTCAAACTAGCACCGCG 59.230 61.111 0.00 0.00 0.00 6.46
626 627 2.474712 GCGTCAAACTAGCACCGC 59.525 61.111 0.00 0.00 0.00 5.68
627 628 2.769617 CGCGTCAAACTAGCACCG 59.230 61.111 0.00 0.00 0.00 4.94
628 629 2.474712 GCGCGTCAAACTAGCACC 59.525 61.111 8.43 0.00 0.00 5.01
629 630 2.027625 AGGCGCGTCAAACTAGCAC 61.028 57.895 15.58 0.00 0.00 4.40
630 631 2.027073 CAGGCGCGTCAAACTAGCA 61.027 57.895 15.58 0.00 0.00 3.49
631 632 1.566018 AACAGGCGCGTCAAACTAGC 61.566 55.000 15.58 0.00 0.00 3.42
632 633 0.163788 CAACAGGCGCGTCAAACTAG 59.836 55.000 15.58 0.00 0.00 2.57
633 634 1.225376 CCAACAGGCGCGTCAAACTA 61.225 55.000 15.58 0.00 0.00 2.24
634 635 2.542907 CCAACAGGCGCGTCAAACT 61.543 57.895 15.58 0.00 0.00 2.66
635 636 2.051345 CCAACAGGCGCGTCAAAC 60.051 61.111 15.58 0.00 0.00 2.93
636 637 2.203084 TCCAACAGGCGCGTCAAA 60.203 55.556 15.58 0.00 0.00 2.69
637 638 2.449031 ATCTCCAACAGGCGCGTCAA 62.449 55.000 15.58 0.00 0.00 3.18
638 639 2.942796 ATCTCCAACAGGCGCGTCA 61.943 57.895 15.58 0.00 0.00 4.35
639 640 2.125512 ATCTCCAACAGGCGCGTC 60.126 61.111 0.21 0.21 0.00 5.19
640 641 2.434884 CATCTCCAACAGGCGCGT 60.435 61.111 8.43 0.00 0.00 6.01
641 642 3.869272 GCATCTCCAACAGGCGCG 61.869 66.667 0.00 0.00 0.00 6.86
642 643 2.437359 AGCATCTCCAACAGGCGC 60.437 61.111 0.00 0.00 0.00 6.53
643 644 3.805267 GAGCATCTCCAACAGGCG 58.195 61.111 0.00 0.00 0.00 5.52
654 655 6.484977 CCAAAAGAATAGGGTCTAAGAGCATC 59.515 42.308 0.00 0.00 0.00 3.91
655 656 6.360618 CCAAAAGAATAGGGTCTAAGAGCAT 58.639 40.000 0.00 0.00 0.00 3.79
656 657 5.745227 CCAAAAGAATAGGGTCTAAGAGCA 58.255 41.667 0.00 0.00 0.00 4.26
657 658 4.576873 GCCAAAAGAATAGGGTCTAAGAGC 59.423 45.833 0.00 0.00 0.00 4.09
658 659 5.745227 TGCCAAAAGAATAGGGTCTAAGAG 58.255 41.667 0.00 0.00 0.00 2.85
659 660 5.772393 TGCCAAAAGAATAGGGTCTAAGA 57.228 39.130 0.00 0.00 0.00 2.10
660 661 5.946377 AGTTGCCAAAAGAATAGGGTCTAAG 59.054 40.000 0.00 0.00 0.00 2.18
661 662 5.887754 AGTTGCCAAAAGAATAGGGTCTAA 58.112 37.500 0.00 0.00 0.00 2.10
662 663 5.514500 AGTTGCCAAAAGAATAGGGTCTA 57.486 39.130 0.00 0.00 0.00 2.59
663 664 4.388577 AGTTGCCAAAAGAATAGGGTCT 57.611 40.909 0.00 0.00 0.00 3.85
664 665 6.405842 CCATAAGTTGCCAAAAGAATAGGGTC 60.406 42.308 0.00 0.00 0.00 4.46
665 666 5.422012 CCATAAGTTGCCAAAAGAATAGGGT 59.578 40.000 0.00 0.00 0.00 4.34
666 667 5.422012 ACCATAAGTTGCCAAAAGAATAGGG 59.578 40.000 0.00 0.00 0.00 3.53
667 668 6.332630 CACCATAAGTTGCCAAAAGAATAGG 58.667 40.000 0.00 0.00 0.00 2.57
668 669 6.071391 ACCACCATAAGTTGCCAAAAGAATAG 60.071 38.462 0.00 0.00 0.00 1.73
669 670 5.777732 ACCACCATAAGTTGCCAAAAGAATA 59.222 36.000 0.00 0.00 0.00 1.75
670 671 4.592778 ACCACCATAAGTTGCCAAAAGAAT 59.407 37.500 0.00 0.00 0.00 2.40
671 672 3.964031 ACCACCATAAGTTGCCAAAAGAA 59.036 39.130 0.00 0.00 0.00 2.52
672 673 3.571590 ACCACCATAAGTTGCCAAAAGA 58.428 40.909 0.00 0.00 0.00 2.52
673 674 4.335400 AACCACCATAAGTTGCCAAAAG 57.665 40.909 0.00 0.00 0.00 2.27
674 675 4.762289 AAACCACCATAAGTTGCCAAAA 57.238 36.364 0.00 0.00 0.00 2.44
675 676 5.279708 CCATAAACCACCATAAGTTGCCAAA 60.280 40.000 0.00 0.00 0.00 3.28
676 677 4.221703 CCATAAACCACCATAAGTTGCCAA 59.778 41.667 0.00 0.00 0.00 4.52
677 678 3.766591 CCATAAACCACCATAAGTTGCCA 59.233 43.478 0.00 0.00 0.00 4.92
678 679 3.767131 ACCATAAACCACCATAAGTTGCC 59.233 43.478 0.00 0.00 0.00 4.52
679 680 6.709018 ATACCATAAACCACCATAAGTTGC 57.291 37.500 0.00 0.00 0.00 4.17
682 683 9.280174 CGATTTATACCATAAACCACCATAAGT 57.720 33.333 0.00 0.00 0.00 2.24
683 684 9.280174 ACGATTTATACCATAAACCACCATAAG 57.720 33.333 0.00 0.00 0.00 1.73
684 685 9.629878 AACGATTTATACCATAAACCACCATAA 57.370 29.630 0.00 0.00 0.00 1.90
685 686 9.629878 AAACGATTTATACCATAAACCACCATA 57.370 29.630 0.00 0.00 0.00 2.74
686 687 8.528044 AAACGATTTATACCATAAACCACCAT 57.472 30.769 0.00 0.00 0.00 3.55
687 688 7.067251 GGAAACGATTTATACCATAAACCACCA 59.933 37.037 0.00 0.00 0.00 4.17
688 689 7.283807 AGGAAACGATTTATACCATAAACCACC 59.716 37.037 0.00 0.00 0.00 4.61
689 690 8.217131 AGGAAACGATTTATACCATAAACCAC 57.783 34.615 0.00 0.00 0.00 4.16
690 691 8.810990 AAGGAAACGATTTATACCATAAACCA 57.189 30.769 0.00 0.00 0.00 3.67
691 692 8.347771 GGAAGGAAACGATTTATACCATAAACC 58.652 37.037 0.00 0.00 0.00 3.27
692 693 9.117183 AGGAAGGAAACGATTTATACCATAAAC 57.883 33.333 0.00 0.00 0.00 2.01
695 696 9.768662 GTTAGGAAGGAAACGATTTATACCATA 57.231 33.333 0.00 0.00 0.00 2.74
696 697 8.491958 AGTTAGGAAGGAAACGATTTATACCAT 58.508 33.333 0.00 0.00 0.00 3.55
697 698 7.854337 AGTTAGGAAGGAAACGATTTATACCA 58.146 34.615 0.00 0.00 0.00 3.25
698 699 8.728337 AAGTTAGGAAGGAAACGATTTATACC 57.272 34.615 0.00 0.00 0.00 2.73
711 712 9.112725 GCGGTTATTAAAATAAGTTAGGAAGGA 57.887 33.333 0.00 0.00 31.94 3.36
712 713 8.347771 GGCGGTTATTAAAATAAGTTAGGAAGG 58.652 37.037 0.00 0.00 31.94 3.46
713 714 8.347771 GGGCGGTTATTAAAATAAGTTAGGAAG 58.652 37.037 0.00 0.00 31.94 3.46
714 715 8.054572 AGGGCGGTTATTAAAATAAGTTAGGAA 58.945 33.333 0.00 0.00 31.94 3.36
715 716 7.576403 AGGGCGGTTATTAAAATAAGTTAGGA 58.424 34.615 0.00 0.00 31.94 2.94
716 717 7.812690 AGGGCGGTTATTAAAATAAGTTAGG 57.187 36.000 0.00 0.00 31.94 2.69
717 718 8.680001 ACAAGGGCGGTTATTAAAATAAGTTAG 58.320 33.333 0.00 0.00 31.94 2.34
718 719 8.578448 ACAAGGGCGGTTATTAAAATAAGTTA 57.422 30.769 0.00 0.00 31.94 2.24
719 720 7.470935 ACAAGGGCGGTTATTAAAATAAGTT 57.529 32.000 0.00 0.00 31.94 2.66
720 721 7.470935 AACAAGGGCGGTTATTAAAATAAGT 57.529 32.000 0.00 0.00 31.94 2.24
723 724 9.411189 AGAATAACAAGGGCGGTTATTAAAATA 57.589 29.630 15.75 0.00 46.13 1.40
724 725 8.301252 AGAATAACAAGGGCGGTTATTAAAAT 57.699 30.769 15.75 5.40 46.13 1.82
725 726 7.393796 TGAGAATAACAAGGGCGGTTATTAAAA 59.606 33.333 15.75 6.39 46.13 1.52
726 727 6.885376 TGAGAATAACAAGGGCGGTTATTAAA 59.115 34.615 15.75 6.62 46.13 1.52
727 728 6.416415 TGAGAATAACAAGGGCGGTTATTAA 58.584 36.000 15.75 6.86 46.13 1.40
728 729 5.991861 TGAGAATAACAAGGGCGGTTATTA 58.008 37.500 15.75 4.01 46.13 0.98
730 731 4.497291 TGAGAATAACAAGGGCGGTTAT 57.503 40.909 0.00 0.00 41.80 1.89
731 732 3.985019 TGAGAATAACAAGGGCGGTTA 57.015 42.857 0.00 0.00 35.40 2.85
732 733 2.871096 TGAGAATAACAAGGGCGGTT 57.129 45.000 0.00 0.00 0.00 4.44
733 734 2.871096 TTGAGAATAACAAGGGCGGT 57.129 45.000 0.00 0.00 0.00 5.68
734 735 3.254657 TGTTTTGAGAATAACAAGGGCGG 59.745 43.478 0.00 0.00 0.00 6.13
735 736 4.497473 TGTTTTGAGAATAACAAGGGCG 57.503 40.909 0.00 0.00 0.00 6.13
736 737 7.546778 TTTTTGTTTTGAGAATAACAAGGGC 57.453 32.000 0.00 0.00 0.00 5.19
764 765 3.437395 ACAACACTTGTACGTGCTGAAAA 59.563 39.130 4.97 0.00 43.27 2.29
765 766 3.004171 ACAACACTTGTACGTGCTGAAA 58.996 40.909 4.97 0.00 43.27 2.69
787 788 8.651391 TTTCAGTAAGAAATTCTACAACGACA 57.349 30.769 0.00 0.00 41.17 4.35
806 807 5.049405 CGCTATCTTTCCAACTTGTTTCAGT 60.049 40.000 0.00 0.00 0.00 3.41
830 831 5.643348 TGGACATTTACTGTGATGACATGAC 59.357 40.000 0.00 0.00 38.54 3.06
831 832 5.803552 TGGACATTTACTGTGATGACATGA 58.196 37.500 0.00 0.00 38.54 3.07
832 833 6.499234 TTGGACATTTACTGTGATGACATG 57.501 37.500 11.38 0.00 38.54 3.21
833 834 7.613022 AGATTTGGACATTTACTGTGATGACAT 59.387 33.333 11.38 0.00 38.54 3.06
834 835 6.942005 AGATTTGGACATTTACTGTGATGACA 59.058 34.615 11.38 7.87 38.54 3.58
844 845 2.538939 GCGCGGAGATTTGGACATTTAC 60.539 50.000 8.83 0.00 0.00 2.01
898 899 3.746492 GGGCAACAATCACGAGTATATCC 59.254 47.826 0.00 0.00 39.74 2.59
908 911 1.305930 GGAGACGGGGCAACAATCAC 61.306 60.000 0.00 0.00 39.74 3.06
1045 1127 4.380945 ATGGTGCCGCCCATGGTT 62.381 61.111 11.73 0.00 43.65 3.67
1347 1474 1.679032 CCTGGTTCTTGATCCCGGAAC 60.679 57.143 0.73 11.59 38.71 3.62
1405 1532 3.974835 TTGGCGCATGCTGATCGGT 62.975 57.895 17.13 0.00 42.25 4.69
1492 1649 2.504899 CTGCGCTCGATGTCGTGT 60.505 61.111 9.73 0.00 40.80 4.49
1556 1713 1.829222 GATCCAGGGGTCGTTGAACTA 59.171 52.381 0.00 0.00 0.00 2.24
1826 6556 4.041691 ACTTGTAGCTTCCTTTGCTTCCTA 59.958 41.667 0.00 0.00 41.46 2.94
1872 6850 5.018539 ACTTCTACACACTTGCAACTACA 57.981 39.130 0.00 0.00 0.00 2.74
1873 6851 7.653767 AATACTTCTACACACTTGCAACTAC 57.346 36.000 0.00 0.00 0.00 2.73
1973 6977 6.368516 ACAAAACCCTTTGCATTAATTGATCG 59.631 34.615 0.00 0.00 44.96 3.69
2035 7044 0.449388 GTAGTGGCAGATGCTTGCAC 59.551 55.000 4.59 4.83 45.86 4.57
2109 7139 8.413229 GTGTGCCTGTAATTATTCATGGTTATT 58.587 33.333 0.00 0.00 0.00 1.40
2112 8167 5.163663 CGTGTGCCTGTAATTATTCATGGTT 60.164 40.000 0.00 0.00 0.00 3.67
2125 8180 1.070105 GTGGAACCGTGTGCCTGTA 59.930 57.895 3.11 0.00 31.04 2.74
2149 9023 9.003658 ACTTGGAATAGTTCACACAAGAAATAG 57.996 33.333 8.96 0.00 38.80 1.73
2158 9032 5.057149 ACAGTCACTTGGAATAGTTCACAC 58.943 41.667 0.00 0.00 0.00 3.82
2196 9074 3.999663 GGGAATAGAGCACACATATCTGC 59.000 47.826 0.00 0.00 0.00 4.26
2266 9153 0.940991 GTGCTTTTTGGCGCCTTCTG 60.941 55.000 29.70 14.68 36.81 3.02
2363 9291 8.928733 CAATTGTACTGAATAAAATTTGCAGCT 58.071 29.630 0.00 0.00 29.44 4.24
2583 10511 3.250040 AGTGAAGTAAACACCATTGTCGC 59.750 43.478 0.00 0.00 38.82 5.19
2648 10577 5.765510 TCAGGCATTGTAATTCCCTTGTAT 58.234 37.500 0.00 0.00 0.00 2.29
2691 10621 6.370442 CCATTGCAATTGATTGAAGTTGTCAT 59.630 34.615 9.83 0.00 40.14 3.06
2710 10642 1.805943 GTTGCCAACATTTCCCATTGC 59.194 47.619 1.91 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.