Multiple sequence alignment - TraesCS6A01G162800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G162800 chr6A 100.000 3785 0 0 1 3785 158070282 158066498 0.000000e+00 6990.0
1 TraesCS6A01G162800 chr6A 91.905 210 15 2 558 767 471195374 471195167 3.700000e-75 292.0
2 TraesCS6A01G162800 chr6A 77.432 257 47 10 3319 3569 104075882 104076133 3.940000e-30 143.0
3 TraesCS6A01G162800 chr6D 93.379 2643 126 23 966 3573 123116546 123119174 0.000000e+00 3866.0
4 TraesCS6A01G162800 chr6D 90.341 176 16 1 3586 3760 123119219 123119394 2.940000e-56 230.0
5 TraesCS6A01G162800 chr6D 93.023 129 8 1 849 976 123116246 123116374 1.800000e-43 187.0
6 TraesCS6A01G162800 chr3B 90.177 1466 106 13 892 2341 242661385 242662828 0.000000e+00 1875.0
7 TraesCS6A01G162800 chr3B 94.678 451 22 1 2337 2785 242668153 242668603 0.000000e+00 699.0
8 TraesCS6A01G162800 chr6B 92.813 1141 73 5 1646 2780 216875059 216876196 0.000000e+00 1644.0
9 TraesCS6A01G162800 chr6B 91.185 363 30 2 3212 3573 216877123 216877484 3.400000e-135 492.0
10 TraesCS6A01G162800 chr6B 90.857 175 15 1 3587 3760 216877530 216877704 2.270000e-57 233.0
11 TraesCS6A01G162800 chr3A 92.260 1124 76 6 987 2103 202602035 202600916 0.000000e+00 1583.0
12 TraesCS6A01G162800 chr3A 96.931 554 12 5 5 558 212745740 212746288 0.000000e+00 924.0
13 TraesCS6A01G162800 chr3A 89.096 697 55 9 2103 2785 202599509 202598820 0.000000e+00 846.0
14 TraesCS6A01G162800 chr3A 92.523 214 14 2 555 767 651189517 651189305 4.750000e-79 305.0
15 TraesCS6A01G162800 chr3A 92.417 211 14 2 559 768 76343631 76343840 2.210000e-77 300.0
16 TraesCS6A01G162800 chr3A 91.031 223 18 2 551 772 378490626 378490847 2.210000e-77 300.0
17 TraesCS6A01G162800 chr3A 92.381 210 14 2 558 767 184272625 184272418 7.950000e-77 298.0
18 TraesCS6A01G162800 chr3A 94.059 101 3 3 895 994 202655554 202655456 2.360000e-32 150.0
19 TraesCS6A01G162800 chr1A 97.312 558 10 4 1 557 439689648 439690201 0.000000e+00 942.0
20 TraesCS6A01G162800 chr1A 92.935 552 25 9 1 549 515287274 515287814 0.000000e+00 791.0
21 TraesCS6A01G162800 chr1A 92.483 439 21 5 1 439 550944159 550943733 5.370000e-173 617.0
22 TraesCS6A01G162800 chr1A 92.453 212 14 2 557 767 352839928 352839718 6.140000e-78 302.0
23 TraesCS6A01G162800 chr1A 91.905 210 16 1 558 767 454420263 454420471 3.700000e-75 292.0
24 TraesCS6A01G162800 chr3D 89.606 635 49 5 2153 2785 167380358 167380977 0.000000e+00 791.0
25 TraesCS6A01G162800 chr3D 88.055 586 52 11 958 1527 167354915 167355498 0.000000e+00 678.0
26 TraesCS6A01G162800 chr3D 89.911 337 31 1 1521 1857 167379237 167379570 7.510000e-117 431.0
27 TraesCS6A01G162800 chr3D 89.318 337 33 1 1521 1857 167377912 167378245 1.630000e-113 420.0
28 TraesCS6A01G162800 chr3D 89.318 337 33 1 1521 1857 167378574 167378907 1.630000e-113 420.0
29 TraesCS6A01G162800 chr3D 88.186 237 19 3 1851 2078 167380076 167380312 1.340000e-69 274.0
30 TraesCS6A01G162800 chr7B 95.928 442 17 1 1 441 179898237 179897796 0.000000e+00 715.0
31 TraesCS6A01G162800 chr7B 87.209 430 50 4 9 433 535498368 535497939 5.680000e-133 484.0
32 TraesCS6A01G162800 chr7B 93.220 118 7 1 439 555 179897021 179896904 5.030000e-39 172.0
33 TraesCS6A01G162800 chr7B 100.000 34 0 0 817 850 179896862 179896829 3.160000e-06 63.9
34 TraesCS6A01G162800 chr7B 96.875 32 1 0 3396 3427 556065195 556065164 2.000000e-03 54.7
35 TraesCS6A01G162800 chr4D 87.260 573 50 16 1 557 9741374 9740809 1.920000e-177 632.0
36 TraesCS6A01G162800 chr2D 87.166 561 54 11 1 557 28760940 28760394 4.150000e-174 621.0
37 TraesCS6A01G162800 chr2A 86.299 562 54 16 1 557 30566023 30565480 1.170000e-164 590.0
38 TraesCS6A01G162800 chr2A 89.916 238 20 4 538 771 519404023 519403786 1.710000e-78 303.0
39 TraesCS6A01G162800 chr2A 96.970 33 1 0 816 848 105546099 105546067 5.280000e-04 56.5
40 TraesCS6A01G162800 chr4A 86.330 534 48 14 1 528 593481836 593482350 3.300000e-155 558.0
41 TraesCS6A01G162800 chr5A 91.480 223 16 3 558 778 512630170 512630391 1.710000e-78 303.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G162800 chr6A 158066498 158070282 3784 True 6990.000000 6990 100.000000 1 3785 1 chr6A.!!$R1 3784
1 TraesCS6A01G162800 chr6D 123116246 123119394 3148 False 1427.666667 3866 92.247667 849 3760 3 chr6D.!!$F1 2911
2 TraesCS6A01G162800 chr3B 242661385 242662828 1443 False 1875.000000 1875 90.177000 892 2341 1 chr3B.!!$F1 1449
3 TraesCS6A01G162800 chr6B 216875059 216877704 2645 False 789.666667 1644 91.618333 1646 3760 3 chr6B.!!$F1 2114
4 TraesCS6A01G162800 chr3A 202598820 202602035 3215 True 1214.500000 1583 90.678000 987 2785 2 chr3A.!!$R4 1798
5 TraesCS6A01G162800 chr3A 212745740 212746288 548 False 924.000000 924 96.931000 5 558 1 chr3A.!!$F2 553
6 TraesCS6A01G162800 chr1A 439689648 439690201 553 False 942.000000 942 97.312000 1 557 1 chr1A.!!$F1 556
7 TraesCS6A01G162800 chr1A 515287274 515287814 540 False 791.000000 791 92.935000 1 549 1 chr1A.!!$F3 548
8 TraesCS6A01G162800 chr3D 167354915 167355498 583 False 678.000000 678 88.055000 958 1527 1 chr3D.!!$F1 569
9 TraesCS6A01G162800 chr3D 167377912 167380977 3065 False 467.200000 791 89.267800 1521 2785 5 chr3D.!!$F2 1264
10 TraesCS6A01G162800 chr7B 179896829 179898237 1408 True 316.966667 715 96.382667 1 850 3 chr7B.!!$R3 849
11 TraesCS6A01G162800 chr4D 9740809 9741374 565 True 632.000000 632 87.260000 1 557 1 chr4D.!!$R1 556
12 TraesCS6A01G162800 chr2D 28760394 28760940 546 True 621.000000 621 87.166000 1 557 1 chr2D.!!$R1 556
13 TraesCS6A01G162800 chr2A 30565480 30566023 543 True 590.000000 590 86.299000 1 557 1 chr2A.!!$R1 556
14 TraesCS6A01G162800 chr4A 593481836 593482350 514 False 558.000000 558 86.330000 1 528 1 chr4A.!!$F1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
720 1521 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.0 13.12 2.86 0.00 3.41 F
738 1539 0.389391 CATTAGGATGGGTCTCGCGT 59.611 55.0 5.77 0.00 0.00 6.01 F
739 1540 0.389391 ATTAGGATGGGTCTCGCGTG 59.611 55.0 5.77 3.13 0.00 5.34 F
753 1554 0.670546 CGCGTGAGACCTGGTTTCAT 60.671 55.0 21.29 0.00 29.77 2.57 F
1203 2229 1.128809 TCCCCCTCAAACAAGCCGTA 61.129 55.0 0.00 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2112 6403 0.104120 TTCCCGGTGCTGATCGTATG 59.896 55.000 0.00 0.0 0.00 2.39 R
2266 6561 0.680280 TAAAGAGGCGCTCGAGGAGT 60.680 55.000 15.58 0.0 35.36 3.85 R
2567 6878 1.813728 GAGTTCCCACGTCTTCCGGT 61.814 60.000 0.00 0.0 42.24 5.28 R
2652 6963 2.042831 GCCACGCCTTGCTGATCTT 61.043 57.895 0.00 0.0 0.00 2.40 R
3135 8196 0.107897 TGGTCGGGTGGAATCGAATG 60.108 55.000 0.00 0.0 37.14 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
423 443 2.039974 GTGCCCGTGTCATGCATGA 61.040 57.895 25.42 25.42 37.34 3.07
515 1316 5.645497 GTGCTGAGATACAAAGATGAGGTTT 59.355 40.000 0.00 0.00 0.00 3.27
558 1359 1.439679 GAGTAGGACCAAAACTGCGG 58.560 55.000 0.00 0.00 0.00 5.69
559 1360 1.001633 GAGTAGGACCAAAACTGCGGA 59.998 52.381 0.00 0.00 0.00 5.54
560 1361 1.418637 AGTAGGACCAAAACTGCGGAA 59.581 47.619 0.00 0.00 0.00 4.30
561 1362 2.158726 AGTAGGACCAAAACTGCGGAAA 60.159 45.455 0.00 0.00 0.00 3.13
562 1363 1.770294 AGGACCAAAACTGCGGAAAA 58.230 45.000 0.00 0.00 0.00 2.29
563 1364 2.104170 AGGACCAAAACTGCGGAAAAA 58.896 42.857 0.00 0.00 0.00 1.94
590 1391 4.621269 AGACCAGGTCTCACGGTT 57.379 55.556 17.31 0.00 38.71 4.44
591 1392 3.759865 AGACCAGGTCTCACGGTTA 57.240 52.632 17.31 0.00 38.71 2.85
592 1393 1.546961 AGACCAGGTCTCACGGTTAG 58.453 55.000 17.31 0.00 38.71 2.34
593 1394 0.108756 GACCAGGTCTCACGGTTAGC 60.109 60.000 12.94 0.00 31.63 3.09
594 1395 0.830444 ACCAGGTCTCACGGTTAGCA 60.830 55.000 0.00 0.00 0.00 3.49
595 1396 0.320374 CCAGGTCTCACGGTTAGCAA 59.680 55.000 0.00 0.00 0.00 3.91
596 1397 1.673033 CCAGGTCTCACGGTTAGCAAG 60.673 57.143 0.00 0.00 0.00 4.01
597 1398 1.000955 CAGGTCTCACGGTTAGCAAGT 59.999 52.381 0.00 0.00 0.00 3.16
598 1399 1.000955 AGGTCTCACGGTTAGCAAGTG 59.999 52.381 0.00 0.00 37.24 3.16
599 1400 1.000506 GGTCTCACGGTTAGCAAGTGA 59.999 52.381 6.87 6.87 41.90 3.41
603 1404 3.678056 TCACGGTTAGCAAGTGAGATT 57.322 42.857 3.66 0.00 39.63 2.40
604 1405 3.585862 TCACGGTTAGCAAGTGAGATTC 58.414 45.455 3.66 0.00 39.63 2.52
605 1406 2.345641 CACGGTTAGCAAGTGAGATTCG 59.654 50.000 0.00 0.00 38.06 3.34
606 1407 2.029290 ACGGTTAGCAAGTGAGATTCGT 60.029 45.455 0.00 0.00 0.00 3.85
607 1408 2.599082 CGGTTAGCAAGTGAGATTCGTC 59.401 50.000 0.00 0.00 0.00 4.20
608 1409 2.930682 GGTTAGCAAGTGAGATTCGTCC 59.069 50.000 0.00 0.00 0.00 4.79
609 1410 3.368531 GGTTAGCAAGTGAGATTCGTCCT 60.369 47.826 0.00 0.00 0.00 3.85
610 1411 4.142227 GGTTAGCAAGTGAGATTCGTCCTA 60.142 45.833 0.00 0.00 0.00 2.94
611 1412 5.408356 GTTAGCAAGTGAGATTCGTCCTAA 58.592 41.667 0.00 0.00 0.00 2.69
612 1413 4.744795 AGCAAGTGAGATTCGTCCTAAT 57.255 40.909 0.00 0.00 0.00 1.73
613 1414 5.854010 AGCAAGTGAGATTCGTCCTAATA 57.146 39.130 0.00 0.00 0.00 0.98
614 1415 5.837437 AGCAAGTGAGATTCGTCCTAATAG 58.163 41.667 0.00 0.00 0.00 1.73
615 1416 5.594725 AGCAAGTGAGATTCGTCCTAATAGA 59.405 40.000 0.00 0.00 0.00 1.98
616 1417 6.266558 AGCAAGTGAGATTCGTCCTAATAGAT 59.733 38.462 0.00 0.00 0.00 1.98
617 1418 6.364706 GCAAGTGAGATTCGTCCTAATAGATG 59.635 42.308 0.00 0.00 0.00 2.90
618 1419 7.652727 CAAGTGAGATTCGTCCTAATAGATGA 58.347 38.462 0.00 0.00 0.00 2.92
619 1420 7.209471 AGTGAGATTCGTCCTAATAGATGAC 57.791 40.000 0.00 0.00 31.52 3.06
620 1421 6.773200 AGTGAGATTCGTCCTAATAGATGACA 59.227 38.462 0.00 0.00 31.52 3.58
621 1422 6.858993 GTGAGATTCGTCCTAATAGATGACAC 59.141 42.308 0.00 0.00 31.52 3.67
622 1423 6.003234 AGATTCGTCCTAATAGATGACACG 57.997 41.667 0.00 0.00 31.52 4.49
623 1424 5.531659 AGATTCGTCCTAATAGATGACACGT 59.468 40.000 0.00 0.00 31.52 4.49
624 1425 4.547406 TCGTCCTAATAGATGACACGTG 57.453 45.455 15.48 15.48 0.00 4.49
625 1426 3.314357 TCGTCCTAATAGATGACACGTGG 59.686 47.826 21.57 1.66 0.00 4.94
626 1427 3.381949 GTCCTAATAGATGACACGTGGC 58.618 50.000 21.57 19.24 0.00 5.01
627 1428 3.028130 TCCTAATAGATGACACGTGGCA 58.972 45.455 29.28 29.28 37.54 4.92
629 1430 4.100963 TCCTAATAGATGACACGTGGCATT 59.899 41.667 36.07 26.04 45.42 3.56
630 1431 4.449068 CCTAATAGATGACACGTGGCATTC 59.551 45.833 36.07 26.81 45.42 2.67
631 1432 3.541996 ATAGATGACACGTGGCATTCA 57.458 42.857 36.07 26.19 45.42 2.57
632 1433 1.442769 AGATGACACGTGGCATTCAC 58.557 50.000 36.07 23.79 45.42 3.18
633 1434 1.155889 GATGACACGTGGCATTCACA 58.844 50.000 36.07 9.07 45.42 3.58
634 1435 1.535028 GATGACACGTGGCATTCACAA 59.465 47.619 36.07 8.22 45.42 3.33
635 1436 1.383523 TGACACGTGGCATTCACAAA 58.616 45.000 23.03 0.00 46.36 2.83
636 1437 1.952990 TGACACGTGGCATTCACAAAT 59.047 42.857 23.03 0.00 46.36 2.32
637 1438 2.031245 TGACACGTGGCATTCACAAATC 60.031 45.455 23.03 3.54 46.36 2.17
638 1439 1.952990 ACACGTGGCATTCACAAATCA 59.047 42.857 21.57 0.00 46.36 2.57
639 1440 2.287547 ACACGTGGCATTCACAAATCAC 60.288 45.455 21.57 0.00 46.36 3.06
640 1441 1.952990 ACGTGGCATTCACAAATCACA 59.047 42.857 0.00 0.00 46.36 3.58
641 1442 2.360483 ACGTGGCATTCACAAATCACAA 59.640 40.909 0.00 0.00 46.36 3.33
642 1443 3.181482 ACGTGGCATTCACAAATCACAAA 60.181 39.130 0.00 0.00 46.36 2.83
643 1444 3.426191 CGTGGCATTCACAAATCACAAAG 59.574 43.478 0.00 0.00 46.36 2.77
644 1445 3.184986 GTGGCATTCACAAATCACAAAGC 59.815 43.478 0.00 0.00 45.39 3.51
645 1446 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
646 1447 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
647 1448 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
648 1449 4.927425 GCATTCACAAATCACAAAGCATCT 59.073 37.500 0.00 0.00 0.00 2.90
649 1450 6.094719 GCATTCACAAATCACAAAGCATCTA 58.905 36.000 0.00 0.00 0.00 1.98
650 1451 6.587226 GCATTCACAAATCACAAAGCATCTAA 59.413 34.615 0.00 0.00 0.00 2.10
651 1452 7.277098 GCATTCACAAATCACAAAGCATCTAAT 59.723 33.333 0.00 0.00 0.00 1.73
652 1453 8.804743 CATTCACAAATCACAAAGCATCTAATC 58.195 33.333 0.00 0.00 0.00 1.75
653 1454 7.692460 TCACAAATCACAAAGCATCTAATCT 57.308 32.000 0.00 0.00 0.00 2.40
654 1455 7.755591 TCACAAATCACAAAGCATCTAATCTC 58.244 34.615 0.00 0.00 0.00 2.75
655 1456 7.609146 TCACAAATCACAAAGCATCTAATCTCT 59.391 33.333 0.00 0.00 0.00 3.10
656 1457 8.242053 CACAAATCACAAAGCATCTAATCTCTT 58.758 33.333 0.00 0.00 0.00 2.85
657 1458 8.457261 ACAAATCACAAAGCATCTAATCTCTTC 58.543 33.333 0.00 0.00 0.00 2.87
658 1459 7.565323 AATCACAAAGCATCTAATCTCTTCC 57.435 36.000 0.00 0.00 0.00 3.46
659 1460 5.431765 TCACAAAGCATCTAATCTCTTCCC 58.568 41.667 0.00 0.00 0.00 3.97
660 1461 5.190528 TCACAAAGCATCTAATCTCTTCCCT 59.809 40.000 0.00 0.00 0.00 4.20
661 1462 5.884792 CACAAAGCATCTAATCTCTTCCCTT 59.115 40.000 0.00 0.00 0.00 3.95
662 1463 6.038050 CACAAAGCATCTAATCTCTTCCCTTC 59.962 42.308 0.00 0.00 0.00 3.46
663 1464 6.069731 ACAAAGCATCTAATCTCTTCCCTTCT 60.070 38.462 0.00 0.00 0.00 2.85
664 1465 5.549742 AGCATCTAATCTCTTCCCTTCTG 57.450 43.478 0.00 0.00 0.00 3.02
665 1466 5.215069 AGCATCTAATCTCTTCCCTTCTGA 58.785 41.667 0.00 0.00 0.00 3.27
666 1467 5.845614 AGCATCTAATCTCTTCCCTTCTGAT 59.154 40.000 0.00 0.00 0.00 2.90
667 1468 6.329723 AGCATCTAATCTCTTCCCTTCTGATT 59.670 38.462 0.00 0.00 0.00 2.57
668 1469 6.997476 GCATCTAATCTCTTCCCTTCTGATTT 59.003 38.462 0.00 0.00 0.00 2.17
669 1470 7.501892 GCATCTAATCTCTTCCCTTCTGATTTT 59.498 37.037 0.00 0.00 0.00 1.82
673 1474 9.898152 CTAATCTCTTCCCTTCTGATTTTAAGT 57.102 33.333 0.00 0.00 0.00 2.24
674 1475 8.572855 AATCTCTTCCCTTCTGATTTTAAGTG 57.427 34.615 0.00 0.00 0.00 3.16
675 1476 6.476378 TCTCTTCCCTTCTGATTTTAAGTGG 58.524 40.000 0.00 0.00 0.00 4.00
676 1477 6.272324 TCTCTTCCCTTCTGATTTTAAGTGGA 59.728 38.462 0.00 0.00 0.00 4.02
677 1478 6.476378 TCTTCCCTTCTGATTTTAAGTGGAG 58.524 40.000 0.00 0.00 0.00 3.86
678 1479 5.179452 TCCCTTCTGATTTTAAGTGGAGG 57.821 43.478 0.00 0.00 0.00 4.30
679 1480 4.018415 TCCCTTCTGATTTTAAGTGGAGGG 60.018 45.833 0.00 0.00 0.00 4.30
680 1481 4.263949 CCCTTCTGATTTTAAGTGGAGGGT 60.264 45.833 0.00 0.00 0.00 4.34
681 1482 4.702131 CCTTCTGATTTTAAGTGGAGGGTG 59.298 45.833 0.00 0.00 0.00 4.61
682 1483 4.301072 TCTGATTTTAAGTGGAGGGTGG 57.699 45.455 0.00 0.00 0.00 4.61
683 1484 3.010138 TCTGATTTTAAGTGGAGGGTGGG 59.990 47.826 0.00 0.00 0.00 4.61
684 1485 2.990284 TGATTTTAAGTGGAGGGTGGGA 59.010 45.455 0.00 0.00 0.00 4.37
685 1486 3.399644 TGATTTTAAGTGGAGGGTGGGAA 59.600 43.478 0.00 0.00 0.00 3.97
686 1487 3.975479 TTTTAAGTGGAGGGTGGGAAA 57.025 42.857 0.00 0.00 0.00 3.13
687 1488 4.479156 TTTTAAGTGGAGGGTGGGAAAT 57.521 40.909 0.00 0.00 0.00 2.17
688 1489 3.449746 TTAAGTGGAGGGTGGGAAATG 57.550 47.619 0.00 0.00 0.00 2.32
689 1490 0.251787 AAGTGGAGGGTGGGAAATGC 60.252 55.000 0.00 0.00 0.00 3.56
690 1491 1.142688 AGTGGAGGGTGGGAAATGCT 61.143 55.000 0.00 0.00 0.00 3.79
691 1492 0.251787 GTGGAGGGTGGGAAATGCTT 60.252 55.000 0.00 0.00 0.00 3.91
692 1493 0.486879 TGGAGGGTGGGAAATGCTTT 59.513 50.000 0.00 0.00 0.00 3.51
693 1494 0.897621 GGAGGGTGGGAAATGCTTTG 59.102 55.000 0.00 0.00 0.00 2.77
694 1495 1.549950 GGAGGGTGGGAAATGCTTTGA 60.550 52.381 0.00 0.00 0.00 2.69
695 1496 1.821136 GAGGGTGGGAAATGCTTTGAG 59.179 52.381 0.00 0.00 0.00 3.02
696 1497 1.428912 AGGGTGGGAAATGCTTTGAGA 59.571 47.619 0.00 0.00 0.00 3.27
697 1498 2.043526 AGGGTGGGAAATGCTTTGAGAT 59.956 45.455 0.00 0.00 0.00 2.75
698 1499 2.833943 GGGTGGGAAATGCTTTGAGATT 59.166 45.455 0.00 0.00 0.00 2.40
699 1500 3.261643 GGGTGGGAAATGCTTTGAGATTT 59.738 43.478 0.00 0.00 0.00 2.17
700 1501 4.248058 GGTGGGAAATGCTTTGAGATTTG 58.752 43.478 0.00 0.00 0.00 2.32
701 1502 4.262592 GGTGGGAAATGCTTTGAGATTTGT 60.263 41.667 0.00 0.00 0.00 2.83
702 1503 4.687483 GTGGGAAATGCTTTGAGATTTGTG 59.313 41.667 0.00 0.00 0.00 3.33
703 1504 4.588106 TGGGAAATGCTTTGAGATTTGTGA 59.412 37.500 0.00 0.00 0.00 3.58
704 1505 5.070180 TGGGAAATGCTTTGAGATTTGTGAA 59.930 36.000 0.00 0.00 0.00 3.18
705 1506 6.168389 GGGAAATGCTTTGAGATTTGTGAAT 58.832 36.000 0.00 0.00 0.00 2.57
706 1507 6.091713 GGGAAATGCTTTGAGATTTGTGAATG 59.908 38.462 0.00 0.00 0.00 2.67
707 1508 6.401796 GGAAATGCTTTGAGATTTGTGAATGC 60.402 38.462 0.00 0.00 0.00 3.56
708 1509 3.916761 TGCTTTGAGATTTGTGAATGCC 58.083 40.909 0.00 0.00 0.00 4.40
709 1510 3.321396 TGCTTTGAGATTTGTGAATGCCA 59.679 39.130 0.00 0.00 0.00 4.92
710 1511 3.676646 GCTTTGAGATTTGTGAATGCCAC 59.323 43.478 0.00 0.00 45.88 5.01
718 1519 3.975992 GTGAATGCCACGTGTCATC 57.024 52.632 13.12 7.23 35.86 2.92
719 1520 0.447801 GTGAATGCCACGTGTCATCC 59.552 55.000 13.12 0.00 35.86 3.51
720 1521 0.036022 TGAATGCCACGTGTCATCCA 59.964 50.000 13.12 2.86 0.00 3.41
721 1522 1.339920 TGAATGCCACGTGTCATCCAT 60.340 47.619 13.12 0.00 0.00 3.41
722 1523 1.745087 GAATGCCACGTGTCATCCATT 59.255 47.619 13.12 12.61 0.00 3.16
723 1524 2.708216 ATGCCACGTGTCATCCATTA 57.292 45.000 15.65 0.00 0.00 1.90
724 1525 2.022764 TGCCACGTGTCATCCATTAG 57.977 50.000 15.65 0.00 0.00 1.73
725 1526 1.299541 GCCACGTGTCATCCATTAGG 58.700 55.000 15.65 0.00 0.00 2.69
737 1538 3.201342 CATTAGGATGGGTCTCGCG 57.799 57.895 0.00 0.00 0.00 5.87
738 1539 0.389391 CATTAGGATGGGTCTCGCGT 59.611 55.000 5.77 0.00 0.00 6.01
739 1540 0.389391 ATTAGGATGGGTCTCGCGTG 59.611 55.000 5.77 3.13 0.00 5.34
740 1541 0.681887 TTAGGATGGGTCTCGCGTGA 60.682 55.000 5.77 6.33 0.00 4.35
741 1542 1.101635 TAGGATGGGTCTCGCGTGAG 61.102 60.000 19.99 19.99 43.99 3.51
748 1549 2.282251 TCTCGCGTGAGACCTGGT 60.282 61.111 24.28 0.00 46.25 4.00
749 1550 1.901948 TCTCGCGTGAGACCTGGTT 60.902 57.895 24.28 0.00 46.25 3.67
750 1551 1.006102 CTCGCGTGAGACCTGGTTT 60.006 57.895 21.40 0.00 45.57 3.27
751 1552 1.006571 TCGCGTGAGACCTGGTTTC 60.007 57.895 10.29 10.29 0.00 2.78
752 1553 1.300620 CGCGTGAGACCTGGTTTCA 60.301 57.895 15.44 15.44 0.00 2.69
753 1554 0.670546 CGCGTGAGACCTGGTTTCAT 60.671 55.000 21.29 0.00 29.77 2.57
754 1555 1.403647 CGCGTGAGACCTGGTTTCATA 60.404 52.381 21.29 0.00 29.77 2.15
755 1556 2.271800 GCGTGAGACCTGGTTTCATAG 58.728 52.381 21.29 18.35 29.77 2.23
756 1557 2.094182 GCGTGAGACCTGGTTTCATAGA 60.094 50.000 21.29 0.00 29.77 1.98
757 1558 3.616560 GCGTGAGACCTGGTTTCATAGAA 60.617 47.826 21.29 0.00 29.77 2.10
758 1559 4.759782 CGTGAGACCTGGTTTCATAGAAT 58.240 43.478 21.29 0.00 29.77 2.40
759 1560 5.178797 CGTGAGACCTGGTTTCATAGAATT 58.821 41.667 21.29 0.00 29.77 2.17
760 1561 5.292101 CGTGAGACCTGGTTTCATAGAATTC 59.708 44.000 21.29 7.41 29.77 2.17
761 1562 6.410540 GTGAGACCTGGTTTCATAGAATTCT 58.589 40.000 21.29 13.56 29.77 2.40
762 1563 6.881602 GTGAGACCTGGTTTCATAGAATTCTT 59.118 38.462 21.29 0.00 29.77 2.52
763 1564 7.391833 GTGAGACCTGGTTTCATAGAATTCTTT 59.608 37.037 21.29 2.41 29.77 2.52
764 1565 7.944554 TGAGACCTGGTTTCATAGAATTCTTTT 59.055 33.333 15.44 0.00 0.00 2.27
765 1566 8.341892 AGACCTGGTTTCATAGAATTCTTTTC 57.658 34.615 14.36 0.00 0.00 2.29
766 1567 7.394641 AGACCTGGTTTCATAGAATTCTTTTCC 59.605 37.037 14.36 8.65 0.00 3.13
767 1568 6.437477 ACCTGGTTTCATAGAATTCTTTTCCC 59.563 38.462 14.36 7.35 0.00 3.97
768 1569 6.665248 CCTGGTTTCATAGAATTCTTTTCCCT 59.335 38.462 14.36 0.00 0.00 4.20
769 1570 7.834181 CCTGGTTTCATAGAATTCTTTTCCCTA 59.166 37.037 14.36 0.00 0.00 3.53
770 1571 9.243105 CTGGTTTCATAGAATTCTTTTCCCTAA 57.757 33.333 14.36 0.00 0.00 2.69
771 1572 9.594936 TGGTTTCATAGAATTCTTTTCCCTAAA 57.405 29.630 14.36 3.07 0.00 1.85
776 1577 8.739972 TCATAGAATTCTTTTCCCTAAAACTGC 58.260 33.333 14.36 0.00 31.37 4.40
777 1578 6.976934 AGAATTCTTTTCCCTAAAACTGCA 57.023 33.333 0.88 0.00 31.37 4.41
778 1579 7.544804 AGAATTCTTTTCCCTAAAACTGCAT 57.455 32.000 0.88 0.00 31.37 3.96
779 1580 8.650143 AGAATTCTTTTCCCTAAAACTGCATA 57.350 30.769 0.88 0.00 31.37 3.14
780 1581 8.743714 AGAATTCTTTTCCCTAAAACTGCATAG 58.256 33.333 0.88 0.00 31.37 2.23
781 1582 8.650143 AATTCTTTTCCCTAAAACTGCATAGA 57.350 30.769 0.00 0.00 31.37 1.98
782 1583 8.829373 ATTCTTTTCCCTAAAACTGCATAGAT 57.171 30.769 0.00 0.00 31.37 1.98
783 1584 7.865706 TCTTTTCCCTAAAACTGCATAGATC 57.134 36.000 0.00 0.00 31.37 2.75
784 1585 7.633789 TCTTTTCCCTAAAACTGCATAGATCT 58.366 34.615 0.00 0.00 31.37 2.75
785 1586 8.109634 TCTTTTCCCTAAAACTGCATAGATCTT 58.890 33.333 0.00 0.00 31.37 2.40
786 1587 9.396022 CTTTTCCCTAAAACTGCATAGATCTTA 57.604 33.333 0.00 0.00 31.37 2.10
787 1588 9.747898 TTTTCCCTAAAACTGCATAGATCTTAA 57.252 29.630 0.00 0.00 29.59 1.85
788 1589 9.747898 TTTCCCTAAAACTGCATAGATCTTAAA 57.252 29.630 0.00 0.00 0.00 1.52
789 1590 9.747898 TTCCCTAAAACTGCATAGATCTTAAAA 57.252 29.630 0.00 0.00 0.00 1.52
790 1591 9.396022 TCCCTAAAACTGCATAGATCTTAAAAG 57.604 33.333 0.00 0.00 0.00 2.27
791 1592 8.131731 CCCTAAAACTGCATAGATCTTAAAAGC 58.868 37.037 0.00 0.00 0.00 3.51
792 1593 8.677300 CCTAAAACTGCATAGATCTTAAAAGCA 58.323 33.333 0.00 3.93 0.00 3.91
793 1594 9.495754 CTAAAACTGCATAGATCTTAAAAGCAC 57.504 33.333 0.00 0.00 0.00 4.40
794 1595 7.693969 AAACTGCATAGATCTTAAAAGCACT 57.306 32.000 0.00 0.00 0.00 4.40
795 1596 8.792830 AAACTGCATAGATCTTAAAAGCACTA 57.207 30.769 0.00 0.00 0.00 2.74
796 1597 8.970859 AACTGCATAGATCTTAAAAGCACTAT 57.029 30.769 0.00 0.00 0.00 2.12
797 1598 8.375608 ACTGCATAGATCTTAAAAGCACTATG 57.624 34.615 19.55 19.55 40.45 2.23
798 1599 7.989741 ACTGCATAGATCTTAAAAGCACTATGT 59.010 33.333 21.89 0.00 40.11 2.29
813 1614 4.035675 GCACTATGTGGATCTTAAAGGCAC 59.964 45.833 0.00 0.00 33.64 5.01
864 1685 1.604378 CGGCAGAAACCCCTCATCT 59.396 57.895 0.00 0.00 0.00 2.90
942 1764 6.302269 AGAGAAGGTGAGTGAACATTTTCAT 58.698 36.000 0.00 0.00 43.72 2.57
1053 2075 1.732732 CGTCACTTGGAAGGCTCTACG 60.733 57.143 0.00 0.00 0.00 3.51
1110 2133 3.123621 CCAACACGAAGTATTGCAGAGTC 59.876 47.826 0.00 0.00 44.57 3.36
1111 2134 2.596452 ACACGAAGTATTGCAGAGTCG 58.404 47.619 0.00 6.00 41.61 4.18
1120 2146 1.881903 TTGCAGAGTCGAGGGAGCAG 61.882 60.000 0.00 0.00 33.14 4.24
1145 2171 2.680352 GGAGGACCGGCTGAGTGA 60.680 66.667 0.00 0.00 0.00 3.41
1180 2206 2.748647 TCCACTCGATCGTCGGCA 60.749 61.111 15.94 0.00 40.88 5.69
1203 2229 1.128809 TCCCCCTCAAACAAGCCGTA 61.129 55.000 0.00 0.00 0.00 4.02
1307 2333 3.894547 AATTCGTCCGCGGCCAGTT 62.895 57.895 23.51 8.55 38.89 3.16
1401 2427 4.814294 GCGCTGTCCCCGTTCGAT 62.814 66.667 0.00 0.00 0.00 3.59
1406 2432 2.274232 CTGTCCCCGTTCGATGCGTA 62.274 60.000 8.67 0.00 0.00 4.42
1461 2487 2.666098 GGTTAGAGGCGCCAGGGAA 61.666 63.158 31.54 14.12 0.00 3.97
1485 2511 2.046892 GTGGACCTGACGCAGCAT 60.047 61.111 0.00 0.00 0.00 3.79
1545 2571 3.080121 CAGGCCGAGAGCTCCCTT 61.080 66.667 10.93 0.00 43.05 3.95
1560 3911 2.670934 CTTGCGGTGCTCAGCCTT 60.671 61.111 8.40 0.00 34.03 4.35
2051 4923 2.801113 CTTTGTTCCGTGGGCATGCG 62.801 60.000 12.44 0.00 0.00 4.73
2068 4940 3.248495 TGCGGGTACGATATTCAAACA 57.752 42.857 0.00 0.00 44.60 2.83
2112 6403 2.093783 CAGGCGATTAACGGTGTCTTTC 59.906 50.000 0.00 0.00 42.83 2.62
2127 6418 2.535984 GTCTTTCATACGATCAGCACCG 59.464 50.000 0.00 0.00 0.00 4.94
2652 6963 0.874175 CGTCCAAGAGCACGTGTCAA 60.874 55.000 18.38 0.00 0.00 3.18
2850 7188 5.705441 CCACAAGCCTTTCAATACTCAGTTA 59.295 40.000 0.00 0.00 0.00 2.24
2917 7969 4.238761 TCACTAAAAGTCTCACGTCAGG 57.761 45.455 0.00 0.00 0.00 3.86
2948 8000 1.337150 CGTCACGAACGCTTCATCG 59.663 57.895 0.00 0.00 45.76 3.84
2963 8015 3.012934 TCATCGACTATCTGACCACCA 57.987 47.619 0.00 0.00 0.00 4.17
2977 8029 2.228822 GACCACCAGCACGAATTTTGAT 59.771 45.455 0.00 0.00 0.00 2.57
2994 8047 0.858961 GATGCAAGTTCATCACGCGC 60.859 55.000 5.73 0.00 41.77 6.86
3003 8056 4.071875 ATCACGCGCCACCCGTTA 62.072 61.111 5.73 0.00 36.69 3.18
3017 8070 2.429069 GTTACGAACCGTCCGCGT 60.429 61.111 4.92 0.00 41.54 6.01
3044 8097 2.004583 CGATGAGCGTGACCCTTTTA 57.995 50.000 0.00 0.00 34.64 1.52
3045 8098 1.927174 CGATGAGCGTGACCCTTTTAG 59.073 52.381 0.00 0.00 34.64 1.85
3046 8099 2.416836 CGATGAGCGTGACCCTTTTAGA 60.417 50.000 0.00 0.00 34.64 2.10
3047 8100 3.738281 CGATGAGCGTGACCCTTTTAGAT 60.738 47.826 0.00 0.00 34.64 1.98
3060 8121 0.539986 TTTAGATGGGGGTGAGACGC 59.460 55.000 0.00 0.00 0.00 5.19
3114 8175 1.550524 TCATTCTCTTCCCCACTCACG 59.449 52.381 0.00 0.00 0.00 4.35
3129 8190 1.197721 CTCACGGCAACCATCACTTTC 59.802 52.381 0.00 0.00 0.00 2.62
3130 8191 0.110238 CACGGCAACCATCACTTTCG 60.110 55.000 0.00 0.00 0.00 3.46
3131 8192 0.250124 ACGGCAACCATCACTTTCGA 60.250 50.000 0.00 0.00 0.00 3.71
3132 8193 1.086696 CGGCAACCATCACTTTCGAT 58.913 50.000 0.00 0.00 0.00 3.59
3133 8194 1.468520 CGGCAACCATCACTTTCGATT 59.531 47.619 0.00 0.00 0.00 3.34
3134 8195 2.476185 CGGCAACCATCACTTTCGATTC 60.476 50.000 0.00 0.00 0.00 2.52
3135 8196 2.159379 GGCAACCATCACTTTCGATTCC 60.159 50.000 0.00 0.00 0.00 3.01
3136 8197 2.487762 GCAACCATCACTTTCGATTCCA 59.512 45.455 0.00 0.00 0.00 3.53
3137 8198 3.129287 GCAACCATCACTTTCGATTCCAT 59.871 43.478 0.00 0.00 0.00 3.41
3138 8199 4.380867 GCAACCATCACTTTCGATTCCATT 60.381 41.667 0.00 0.00 0.00 3.16
3150 8211 1.873591 GATTCCATTCGATTCCACCCG 59.126 52.381 0.00 0.00 0.00 5.28
3151 8212 0.906066 TTCCATTCGATTCCACCCGA 59.094 50.000 0.00 0.00 0.00 5.14
3152 8213 0.177141 TCCATTCGATTCCACCCGAC 59.823 55.000 0.00 0.00 34.26 4.79
3154 8215 0.107897 CATTCGATTCCACCCGACCA 60.108 55.000 0.00 0.00 34.26 4.02
3155 8216 0.178068 ATTCGATTCCACCCGACCAG 59.822 55.000 0.00 0.00 34.26 4.00
3159 8220 0.830648 GATTCCACCCGACCAGATCA 59.169 55.000 0.00 0.00 0.00 2.92
3164 8225 1.381327 ACCCGACCAGATCACCGAT 60.381 57.895 0.00 0.00 0.00 4.18
3173 8234 0.561184 AGATCACCGATGAGGGGGTA 59.439 55.000 0.00 0.00 45.91 3.69
3187 8248 1.000896 GGGTATGTGGTGGCTTGCT 60.001 57.895 0.00 0.00 0.00 3.91
3246 8314 2.815211 GCGCTCGAGGATGCACAA 60.815 61.111 15.58 0.00 0.00 3.33
3247 8315 2.806856 GCGCTCGAGGATGCACAAG 61.807 63.158 15.58 0.00 0.00 3.16
3315 8384 2.420568 GGACCTCGGCGACATGGTA 61.421 63.158 17.87 0.00 35.98 3.25
3317 8386 0.104304 GACCTCGGCGACATGGTAAT 59.896 55.000 17.87 0.00 35.98 1.89
3337 8406 8.884323 TGGTAATGGAGCTAAATCTGATAGATT 58.116 33.333 0.00 0.00 46.22 2.40
3401 8470 6.884836 GGTAACAAGGACATGAGATTTTACCT 59.115 38.462 0.00 0.00 35.22 3.08
3407 8476 7.272144 AGGACATGAGATTTTACCTAGGTTT 57.728 36.000 22.11 2.69 0.00 3.27
3420 8489 2.362717 CCTAGGTTTAGGCTCTCCGAAG 59.637 54.545 0.00 0.00 40.10 3.79
3461 8530 7.687941 TTTGTTTGTTTTTATTGCTTTGGGA 57.312 28.000 0.00 0.00 0.00 4.37
3525 8595 3.715315 TCGTTCTAGAGTCCTATCCCTCA 59.285 47.826 0.00 0.00 0.00 3.86
3556 8627 2.225470 GGTATCGGGGGTCTAGGGTTAT 60.225 54.545 0.00 0.00 0.00 1.89
3560 8631 1.481802 CGGGGGTCTAGGGTTATAGCA 60.482 57.143 0.00 0.00 0.00 3.49
3564 8635 3.504343 GGGGTCTAGGGTTATAGCATCCT 60.504 52.174 0.00 0.00 0.00 3.24
3573 8644 4.284746 GGGTTATAGCATCCTAGTCAGCTT 59.715 45.833 5.53 0.00 38.47 3.74
3574 8645 5.233988 GGTTATAGCATCCTAGTCAGCTTG 58.766 45.833 5.53 0.00 38.47 4.01
3576 8647 0.835941 AGCATCCTAGTCAGCTTGGG 59.164 55.000 0.00 0.00 38.03 4.12
3577 8648 0.817229 GCATCCTAGTCAGCTTGGGC 60.817 60.000 0.00 0.00 38.03 5.36
3578 8649 0.179034 CATCCTAGTCAGCTTGGGCC 60.179 60.000 0.00 0.00 38.03 5.80
3579 8650 1.690219 ATCCTAGTCAGCTTGGGCCG 61.690 60.000 0.00 0.00 38.03 6.13
3580 8651 2.660064 CCTAGTCAGCTTGGGCCGT 61.660 63.158 0.00 0.00 39.73 5.68
3581 8652 1.153549 CTAGTCAGCTTGGGCCGTC 60.154 63.158 0.00 0.00 39.73 4.79
3582 8653 1.608717 CTAGTCAGCTTGGGCCGTCT 61.609 60.000 0.00 0.00 39.73 4.18
3585 8656 0.107654 GTCAGCTTGGGCCGTCTAAT 60.108 55.000 0.00 0.00 39.73 1.73
3587 8658 1.017387 CAGCTTGGGCCGTCTAATTC 58.983 55.000 0.00 0.00 39.73 2.17
3588 8659 0.618458 AGCTTGGGCCGTCTAATTCA 59.382 50.000 0.00 0.00 39.73 2.57
3589 8660 0.733150 GCTTGGGCCGTCTAATTCAC 59.267 55.000 0.00 0.00 0.00 3.18
3590 8661 1.379527 CTTGGGCCGTCTAATTCACC 58.620 55.000 0.00 0.00 0.00 4.02
3603 8706 3.726291 AATTCACCACAAGTTTTCGGG 57.274 42.857 0.00 0.00 0.00 5.14
3617 8720 0.918983 TTCGGGAGCCTTCCATTCAT 59.081 50.000 0.00 0.00 45.98 2.57
3633 8736 1.949133 CATACGTCATGGGCCGTCG 60.949 63.158 0.00 0.00 38.43 5.12
3634 8737 3.146726 ATACGTCATGGGCCGTCGG 62.147 63.158 6.99 6.99 38.43 4.79
3660 8764 0.608130 CCACTCCTGAACCGACATGA 59.392 55.000 0.00 0.00 0.00 3.07
3672 8776 1.901085 GACATGAGGTCCTCGGCTT 59.099 57.895 14.34 0.00 40.83 4.35
3681 8785 3.710722 CCTCGGCTTGTCCTGGCT 61.711 66.667 0.00 0.00 0.00 4.75
3697 8801 2.608988 CTCACCAGGCTGGGAGGT 60.609 66.667 35.34 13.68 43.37 3.85
3701 8805 3.721706 CCAGGCTGGGAGGTGACC 61.722 72.222 26.34 0.00 32.67 4.02
3741 8845 0.916358 AGGACACCATTAGCAGCCCT 60.916 55.000 0.00 0.00 0.00 5.19
3751 8855 1.774894 TAGCAGCCCTTGAACCGGTT 61.775 55.000 22.50 22.50 0.00 4.44
3763 8867 4.675976 TGAACCGGTTTTCAAGTCTAGA 57.324 40.909 23.22 0.00 32.42 2.43
3764 8868 4.374399 TGAACCGGTTTTCAAGTCTAGAC 58.626 43.478 23.22 15.41 32.42 2.59
3765 8869 4.141892 TGAACCGGTTTTCAAGTCTAGACA 60.142 41.667 23.22 6.85 32.42 3.41
3766 8870 3.725490 ACCGGTTTTCAAGTCTAGACAC 58.275 45.455 24.44 12.26 0.00 3.67
3767 8871 3.133362 ACCGGTTTTCAAGTCTAGACACA 59.867 43.478 24.44 5.05 0.00 3.72
3768 8872 3.493503 CCGGTTTTCAAGTCTAGACACAC 59.506 47.826 24.44 7.11 0.00 3.82
3769 8873 3.493503 CGGTTTTCAAGTCTAGACACACC 59.506 47.826 24.44 14.32 0.00 4.16
3770 8874 4.704965 GGTTTTCAAGTCTAGACACACCT 58.295 43.478 24.44 0.36 0.00 4.00
3771 8875 5.123936 GGTTTTCAAGTCTAGACACACCTT 58.876 41.667 24.44 7.05 0.00 3.50
3772 8876 5.007724 GGTTTTCAAGTCTAGACACACCTTG 59.992 44.000 24.44 18.08 35.09 3.61
3773 8877 4.336889 TTCAAGTCTAGACACACCTTGG 57.663 45.455 24.44 0.65 34.65 3.61
3774 8878 2.037251 TCAAGTCTAGACACACCTTGGC 59.963 50.000 24.44 0.00 34.65 4.52
3776 8880 1.896465 AGTCTAGACACACCTTGGCTC 59.104 52.381 24.44 0.00 41.21 4.70
3777 8881 1.896465 GTCTAGACACACCTTGGCTCT 59.104 52.381 18.20 0.00 41.21 4.09
3778 8882 2.094442 GTCTAGACACACCTTGGCTCTC 60.094 54.545 18.20 0.00 41.21 3.20
3779 8883 1.205893 CTAGACACACCTTGGCTCTCC 59.794 57.143 0.00 0.00 41.21 3.71
3780 8884 1.003233 GACACACCTTGGCTCTCCC 60.003 63.158 0.00 0.00 0.00 4.30
3781 8885 2.046892 CACACCTTGGCTCTCCCG 60.047 66.667 0.00 0.00 35.87 5.14
3782 8886 3.322466 ACACCTTGGCTCTCCCGG 61.322 66.667 0.00 0.00 35.87 5.73
3783 8887 4.101448 CACCTTGGCTCTCCCGGG 62.101 72.222 16.85 16.85 35.87 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
423 443 4.472833 GCACATATTATCTCTCCTCCCCAT 59.527 45.833 0.00 0.00 0.00 4.00
573 1374 1.546961 CTAACCGTGAGACCTGGTCT 58.453 55.000 28.70 28.70 46.42 3.85
574 1375 0.108756 GCTAACCGTGAGACCTGGTC 60.109 60.000 19.20 19.20 34.11 4.02
575 1376 0.830444 TGCTAACCGTGAGACCTGGT 60.830 55.000 0.00 0.00 37.68 4.00
576 1377 0.320374 TTGCTAACCGTGAGACCTGG 59.680 55.000 0.00 0.00 0.00 4.45
577 1378 1.000955 ACTTGCTAACCGTGAGACCTG 59.999 52.381 0.00 0.00 0.00 4.00
578 1379 1.000955 CACTTGCTAACCGTGAGACCT 59.999 52.381 0.00 0.00 0.00 3.85
579 1380 1.000506 TCACTTGCTAACCGTGAGACC 59.999 52.381 0.00 0.00 33.15 3.85
580 1381 2.433868 TCACTTGCTAACCGTGAGAC 57.566 50.000 0.00 0.00 33.15 3.36
583 1384 3.585862 GAATCTCACTTGCTAACCGTGA 58.414 45.455 0.00 0.00 36.37 4.35
584 1385 2.345641 CGAATCTCACTTGCTAACCGTG 59.654 50.000 0.00 0.00 0.00 4.94
585 1386 2.029290 ACGAATCTCACTTGCTAACCGT 60.029 45.455 0.00 0.00 0.00 4.83
586 1387 2.599082 GACGAATCTCACTTGCTAACCG 59.401 50.000 0.00 0.00 0.00 4.44
587 1388 2.930682 GGACGAATCTCACTTGCTAACC 59.069 50.000 0.00 0.00 0.00 2.85
588 1389 3.851098 AGGACGAATCTCACTTGCTAAC 58.149 45.455 0.00 0.00 0.00 2.34
589 1390 5.654603 TTAGGACGAATCTCACTTGCTAA 57.345 39.130 0.00 0.00 0.00 3.09
590 1391 5.854010 ATTAGGACGAATCTCACTTGCTA 57.146 39.130 0.00 0.00 0.00 3.49
591 1392 4.744795 ATTAGGACGAATCTCACTTGCT 57.255 40.909 0.00 0.00 0.00 3.91
592 1393 5.833082 TCTATTAGGACGAATCTCACTTGC 58.167 41.667 0.00 0.00 0.00 4.01
593 1394 7.593273 GTCATCTATTAGGACGAATCTCACTTG 59.407 40.741 0.00 0.00 0.00 3.16
594 1395 7.285629 TGTCATCTATTAGGACGAATCTCACTT 59.714 37.037 0.00 0.00 41.87 3.16
595 1396 6.773200 TGTCATCTATTAGGACGAATCTCACT 59.227 38.462 0.00 0.00 41.87 3.41
596 1397 6.858993 GTGTCATCTATTAGGACGAATCTCAC 59.141 42.308 0.00 0.00 41.87 3.51
597 1398 6.293462 CGTGTCATCTATTAGGACGAATCTCA 60.293 42.308 0.00 0.00 41.87 3.27
598 1399 6.081049 CGTGTCATCTATTAGGACGAATCTC 58.919 44.000 0.00 0.00 41.87 2.75
599 1400 5.531659 ACGTGTCATCTATTAGGACGAATCT 59.468 40.000 0.00 0.00 41.87 2.40
600 1401 5.625721 CACGTGTCATCTATTAGGACGAATC 59.374 44.000 7.58 0.00 41.87 2.52
601 1402 5.507482 CCACGTGTCATCTATTAGGACGAAT 60.507 44.000 15.65 0.00 41.87 3.34
602 1403 4.201980 CCACGTGTCATCTATTAGGACGAA 60.202 45.833 15.65 0.00 41.87 3.85
603 1404 3.314357 CCACGTGTCATCTATTAGGACGA 59.686 47.826 15.65 0.00 41.87 4.20
604 1405 3.629058 CCACGTGTCATCTATTAGGACG 58.371 50.000 15.65 0.00 41.87 4.79
605 1406 3.181479 TGCCACGTGTCATCTATTAGGAC 60.181 47.826 15.65 0.00 39.38 3.85
606 1407 3.028130 TGCCACGTGTCATCTATTAGGA 58.972 45.455 15.65 0.00 0.00 2.94
607 1408 3.452755 TGCCACGTGTCATCTATTAGG 57.547 47.619 15.65 0.00 0.00 2.69
608 1409 5.049828 TGAATGCCACGTGTCATCTATTAG 58.950 41.667 13.12 0.00 0.00 1.73
609 1410 4.808895 GTGAATGCCACGTGTCATCTATTA 59.191 41.667 13.12 0.00 35.86 0.98
610 1411 3.623060 GTGAATGCCACGTGTCATCTATT 59.377 43.478 13.12 0.00 35.86 1.73
611 1412 3.198068 GTGAATGCCACGTGTCATCTAT 58.802 45.455 13.12 0.00 35.86 1.98
612 1413 2.616960 GTGAATGCCACGTGTCATCTA 58.383 47.619 13.12 2.12 35.86 1.98
613 1414 1.442769 GTGAATGCCACGTGTCATCT 58.557 50.000 13.12 3.38 35.86 2.90
614 1415 3.975992 GTGAATGCCACGTGTCATC 57.024 52.632 13.12 7.23 35.86 2.92
622 1423 3.184986 GCTTTGTGATTTGTGAATGCCAC 59.815 43.478 0.00 0.00 45.88 5.01
623 1424 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
624 1425 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
625 1426 4.927425 AGATGCTTTGTGATTTGTGAATGC 59.073 37.500 0.00 0.00 0.00 3.56
626 1427 8.697846 ATTAGATGCTTTGTGATTTGTGAATG 57.302 30.769 0.00 0.00 0.00 2.67
627 1428 8.746530 AGATTAGATGCTTTGTGATTTGTGAAT 58.253 29.630 0.00 0.00 0.00 2.57
628 1429 8.114331 AGATTAGATGCTTTGTGATTTGTGAA 57.886 30.769 0.00 0.00 0.00 3.18
629 1430 7.609146 AGAGATTAGATGCTTTGTGATTTGTGA 59.391 33.333 0.00 0.00 0.00 3.58
630 1431 7.759465 AGAGATTAGATGCTTTGTGATTTGTG 58.241 34.615 0.00 0.00 0.00 3.33
631 1432 7.934855 AGAGATTAGATGCTTTGTGATTTGT 57.065 32.000 0.00 0.00 0.00 2.83
632 1433 7.914346 GGAAGAGATTAGATGCTTTGTGATTTG 59.086 37.037 0.00 0.00 0.00 2.32
633 1434 7.067981 GGGAAGAGATTAGATGCTTTGTGATTT 59.932 37.037 0.00 0.00 0.00 2.17
634 1435 6.545298 GGGAAGAGATTAGATGCTTTGTGATT 59.455 38.462 0.00 0.00 0.00 2.57
635 1436 6.060788 GGGAAGAGATTAGATGCTTTGTGAT 58.939 40.000 0.00 0.00 0.00 3.06
636 1437 5.190528 AGGGAAGAGATTAGATGCTTTGTGA 59.809 40.000 0.00 0.00 0.00 3.58
637 1438 5.435291 AGGGAAGAGATTAGATGCTTTGTG 58.565 41.667 0.00 0.00 0.00 3.33
638 1439 5.707066 AGGGAAGAGATTAGATGCTTTGT 57.293 39.130 0.00 0.00 0.00 2.83
639 1440 6.260493 CAGAAGGGAAGAGATTAGATGCTTTG 59.740 42.308 0.00 0.00 0.00 2.77
640 1441 6.157645 TCAGAAGGGAAGAGATTAGATGCTTT 59.842 38.462 0.00 0.00 0.00 3.51
641 1442 5.664908 TCAGAAGGGAAGAGATTAGATGCTT 59.335 40.000 0.00 0.00 0.00 3.91
642 1443 5.215069 TCAGAAGGGAAGAGATTAGATGCT 58.785 41.667 0.00 0.00 0.00 3.79
643 1444 5.543507 TCAGAAGGGAAGAGATTAGATGC 57.456 43.478 0.00 0.00 0.00 3.91
644 1445 8.977267 AAAATCAGAAGGGAAGAGATTAGATG 57.023 34.615 0.00 0.00 0.00 2.90
647 1448 9.898152 ACTTAAAATCAGAAGGGAAGAGATTAG 57.102 33.333 0.00 0.00 0.00 1.73
648 1449 9.672673 CACTTAAAATCAGAAGGGAAGAGATTA 57.327 33.333 0.00 0.00 0.00 1.75
649 1450 7.613411 CCACTTAAAATCAGAAGGGAAGAGATT 59.387 37.037 0.00 0.00 0.00 2.40
650 1451 7.037297 TCCACTTAAAATCAGAAGGGAAGAGAT 60.037 37.037 0.00 0.00 0.00 2.75
651 1452 6.272324 TCCACTTAAAATCAGAAGGGAAGAGA 59.728 38.462 0.00 0.00 0.00 3.10
652 1453 6.476378 TCCACTTAAAATCAGAAGGGAAGAG 58.524 40.000 0.00 0.00 0.00 2.85
653 1454 6.448369 TCCACTTAAAATCAGAAGGGAAGA 57.552 37.500 0.00 0.00 0.00 2.87
654 1455 5.649831 CCTCCACTTAAAATCAGAAGGGAAG 59.350 44.000 0.00 0.00 0.00 3.46
655 1456 5.516591 CCCTCCACTTAAAATCAGAAGGGAA 60.517 44.000 0.00 0.00 33.81 3.97
656 1457 4.018415 CCCTCCACTTAAAATCAGAAGGGA 60.018 45.833 0.00 0.00 33.81 4.20
657 1458 4.263949 ACCCTCCACTTAAAATCAGAAGGG 60.264 45.833 0.00 0.00 37.68 3.95
658 1459 4.702131 CACCCTCCACTTAAAATCAGAAGG 59.298 45.833 0.00 0.00 0.00 3.46
659 1460 4.702131 CCACCCTCCACTTAAAATCAGAAG 59.298 45.833 0.00 0.00 0.00 2.85
660 1461 4.508405 CCCACCCTCCACTTAAAATCAGAA 60.508 45.833 0.00 0.00 0.00 3.02
661 1462 3.010138 CCCACCCTCCACTTAAAATCAGA 59.990 47.826 0.00 0.00 0.00 3.27
662 1463 3.010138 TCCCACCCTCCACTTAAAATCAG 59.990 47.826 0.00 0.00 0.00 2.90
663 1464 2.990284 TCCCACCCTCCACTTAAAATCA 59.010 45.455 0.00 0.00 0.00 2.57
664 1465 3.732048 TCCCACCCTCCACTTAAAATC 57.268 47.619 0.00 0.00 0.00 2.17
665 1466 4.479156 TTTCCCACCCTCCACTTAAAAT 57.521 40.909 0.00 0.00 0.00 1.82
666 1467 3.975479 TTTCCCACCCTCCACTTAAAA 57.025 42.857 0.00 0.00 0.00 1.52
667 1468 3.773560 CATTTCCCACCCTCCACTTAAA 58.226 45.455 0.00 0.00 0.00 1.52
668 1469 2.556559 GCATTTCCCACCCTCCACTTAA 60.557 50.000 0.00 0.00 0.00 1.85
669 1470 1.005450 GCATTTCCCACCCTCCACTTA 59.995 52.381 0.00 0.00 0.00 2.24
670 1471 0.251787 GCATTTCCCACCCTCCACTT 60.252 55.000 0.00 0.00 0.00 3.16
671 1472 1.142688 AGCATTTCCCACCCTCCACT 61.143 55.000 0.00 0.00 0.00 4.00
672 1473 0.251787 AAGCATTTCCCACCCTCCAC 60.252 55.000 0.00 0.00 0.00 4.02
673 1474 0.486879 AAAGCATTTCCCACCCTCCA 59.513 50.000 0.00 0.00 27.08 3.86
674 1475 0.897621 CAAAGCATTTCCCACCCTCC 59.102 55.000 0.00 0.00 35.03 4.30
675 1476 1.821136 CTCAAAGCATTTCCCACCCTC 59.179 52.381 0.00 0.00 35.03 4.30
676 1477 1.428912 TCTCAAAGCATTTCCCACCCT 59.571 47.619 0.00 0.00 35.03 4.34
677 1478 1.923356 TCTCAAAGCATTTCCCACCC 58.077 50.000 0.00 0.00 35.03 4.61
678 1479 4.248058 CAAATCTCAAAGCATTTCCCACC 58.752 43.478 0.00 0.00 35.03 4.61
679 1480 4.687483 CACAAATCTCAAAGCATTTCCCAC 59.313 41.667 0.00 0.00 35.03 4.61
680 1481 4.588106 TCACAAATCTCAAAGCATTTCCCA 59.412 37.500 0.00 0.00 35.03 4.37
681 1482 5.138125 TCACAAATCTCAAAGCATTTCCC 57.862 39.130 0.00 0.00 35.03 3.97
682 1483 6.401796 GCATTCACAAATCTCAAAGCATTTCC 60.402 38.462 0.00 0.00 35.03 3.13
683 1484 6.401796 GGCATTCACAAATCTCAAAGCATTTC 60.402 38.462 0.00 0.00 35.03 2.17
684 1485 5.410439 GGCATTCACAAATCTCAAAGCATTT 59.590 36.000 0.00 0.00 40.26 2.32
685 1486 4.933400 GGCATTCACAAATCTCAAAGCATT 59.067 37.500 0.00 0.00 0.00 3.56
686 1487 4.020928 TGGCATTCACAAATCTCAAAGCAT 60.021 37.500 0.00 0.00 0.00 3.79
687 1488 3.321396 TGGCATTCACAAATCTCAAAGCA 59.679 39.130 0.00 0.00 0.00 3.91
688 1489 3.676646 GTGGCATTCACAAATCTCAAAGC 59.323 43.478 0.00 0.00 45.39 3.51
689 1490 3.916172 CGTGGCATTCACAAATCTCAAAG 59.084 43.478 0.00 0.00 46.36 2.77
690 1491 3.317711 ACGTGGCATTCACAAATCTCAAA 59.682 39.130 0.00 0.00 46.36 2.69
691 1492 2.884012 ACGTGGCATTCACAAATCTCAA 59.116 40.909 0.00 0.00 46.36 3.02
692 1493 2.226200 CACGTGGCATTCACAAATCTCA 59.774 45.455 7.95 0.00 46.36 3.27
693 1494 2.226437 ACACGTGGCATTCACAAATCTC 59.774 45.455 21.57 0.00 46.36 2.75
694 1495 2.226437 GACACGTGGCATTCACAAATCT 59.774 45.455 18.77 0.00 46.36 2.40
695 1496 2.031245 TGACACGTGGCATTCACAAATC 60.031 45.455 23.03 3.54 46.36 2.17
696 1497 1.952990 TGACACGTGGCATTCACAAAT 59.047 42.857 23.03 0.00 46.36 2.32
697 1498 1.383523 TGACACGTGGCATTCACAAA 58.616 45.000 23.03 0.00 46.36 2.83
698 1499 1.535028 GATGACACGTGGCATTCACAA 59.465 47.619 36.07 8.22 45.42 3.33
699 1500 1.155889 GATGACACGTGGCATTCACA 58.844 50.000 36.07 9.07 45.42 3.58
700 1501 0.447801 GGATGACACGTGGCATTCAC 59.552 55.000 36.07 24.74 45.42 3.18
701 1502 0.036022 TGGATGACACGTGGCATTCA 59.964 50.000 36.64 36.64 46.54 2.57
702 1503 1.382522 ATGGATGACACGTGGCATTC 58.617 50.000 36.07 34.16 45.42 2.67
703 1504 1.838112 AATGGATGACACGTGGCATT 58.162 45.000 36.07 19.83 45.42 3.56
705 1506 1.406751 CCTAATGGATGACACGTGGCA 60.407 52.381 29.28 29.28 37.54 4.92
706 1507 1.134521 TCCTAATGGATGACACGTGGC 60.135 52.381 21.57 19.24 37.46 5.01
707 1508 2.979814 TCCTAATGGATGACACGTGG 57.020 50.000 21.57 1.66 37.46 4.94
719 1520 0.389391 ACGCGAGACCCATCCTAATG 59.611 55.000 15.93 0.00 0.00 1.90
720 1521 0.389391 CACGCGAGACCCATCCTAAT 59.611 55.000 15.93 0.00 0.00 1.73
721 1522 0.681887 TCACGCGAGACCCATCCTAA 60.682 55.000 15.93 0.00 0.00 2.69
722 1523 1.077285 TCACGCGAGACCCATCCTA 60.077 57.895 15.93 0.00 0.00 2.94
723 1524 2.362503 TCACGCGAGACCCATCCT 60.363 61.111 15.93 0.00 0.00 3.24
724 1525 2.105128 CTCACGCGAGACCCATCC 59.895 66.667 15.93 0.00 42.34 3.51
725 1526 3.197614 TCTCACGCGAGACCCATC 58.802 61.111 15.93 0.00 43.55 3.51
731 1532 1.461091 AAACCAGGTCTCACGCGAGA 61.461 55.000 15.93 10.37 46.28 4.04
732 1533 1.006102 AAACCAGGTCTCACGCGAG 60.006 57.895 15.93 4.59 40.98 5.03
733 1534 1.006571 GAAACCAGGTCTCACGCGA 60.007 57.895 15.93 0.00 0.00 5.87
734 1535 0.670546 ATGAAACCAGGTCTCACGCG 60.671 55.000 3.53 3.53 0.00 6.01
735 1536 2.094182 TCTATGAAACCAGGTCTCACGC 60.094 50.000 0.00 0.00 0.00 5.34
736 1537 3.868757 TCTATGAAACCAGGTCTCACG 57.131 47.619 0.00 0.00 0.00 4.35
737 1538 6.410540 AGAATTCTATGAAACCAGGTCTCAC 58.589 40.000 6.06 0.00 0.00 3.51
738 1539 6.627087 AGAATTCTATGAAACCAGGTCTCA 57.373 37.500 6.06 0.00 0.00 3.27
739 1540 7.929941 AAAGAATTCTATGAAACCAGGTCTC 57.070 36.000 8.75 0.00 0.00 3.36
740 1541 7.394641 GGAAAAGAATTCTATGAAACCAGGTCT 59.605 37.037 8.75 0.00 0.00 3.85
741 1542 7.363007 GGGAAAAGAATTCTATGAAACCAGGTC 60.363 40.741 8.75 0.00 0.00 3.85
742 1543 6.437477 GGGAAAAGAATTCTATGAAACCAGGT 59.563 38.462 8.75 0.00 0.00 4.00
743 1544 6.665248 AGGGAAAAGAATTCTATGAAACCAGG 59.335 38.462 8.75 0.00 0.00 4.45
744 1545 7.709149 AGGGAAAAGAATTCTATGAAACCAG 57.291 36.000 8.75 0.00 0.00 4.00
745 1546 9.594936 TTTAGGGAAAAGAATTCTATGAAACCA 57.405 29.630 8.75 0.00 0.00 3.67
750 1551 8.739972 GCAGTTTTAGGGAAAAGAATTCTATGA 58.260 33.333 8.75 0.00 35.21 2.15
751 1552 8.522830 TGCAGTTTTAGGGAAAAGAATTCTATG 58.477 33.333 8.75 0.00 35.21 2.23
752 1553 8.650143 TGCAGTTTTAGGGAAAAGAATTCTAT 57.350 30.769 8.75 0.41 35.21 1.98
753 1554 8.650143 ATGCAGTTTTAGGGAAAAGAATTCTA 57.350 30.769 8.75 0.00 35.21 2.10
754 1555 6.976934 TGCAGTTTTAGGGAAAAGAATTCT 57.023 33.333 0.88 0.88 35.21 2.40
755 1556 8.739972 TCTATGCAGTTTTAGGGAAAAGAATTC 58.260 33.333 0.00 0.00 35.21 2.17
756 1557 8.650143 TCTATGCAGTTTTAGGGAAAAGAATT 57.350 30.769 0.00 0.00 35.21 2.17
757 1558 8.829373 ATCTATGCAGTTTTAGGGAAAAGAAT 57.171 30.769 0.00 0.00 35.21 2.40
758 1559 8.109634 AGATCTATGCAGTTTTAGGGAAAAGAA 58.890 33.333 0.00 0.00 35.21 2.52
759 1560 7.633789 AGATCTATGCAGTTTTAGGGAAAAGA 58.366 34.615 0.00 0.00 35.21 2.52
760 1561 7.872113 AGATCTATGCAGTTTTAGGGAAAAG 57.128 36.000 0.00 0.00 35.21 2.27
761 1562 9.747898 TTAAGATCTATGCAGTTTTAGGGAAAA 57.252 29.630 0.00 0.00 32.00 2.29
762 1563 9.747898 TTTAAGATCTATGCAGTTTTAGGGAAA 57.252 29.630 0.00 0.00 0.00 3.13
763 1564 9.747898 TTTTAAGATCTATGCAGTTTTAGGGAA 57.252 29.630 0.00 0.00 0.00 3.97
764 1565 9.396022 CTTTTAAGATCTATGCAGTTTTAGGGA 57.604 33.333 0.00 0.00 0.00 4.20
765 1566 8.131731 GCTTTTAAGATCTATGCAGTTTTAGGG 58.868 37.037 0.00 0.00 0.00 3.53
766 1567 8.677300 TGCTTTTAAGATCTATGCAGTTTTAGG 58.323 33.333 0.00 0.00 0.00 2.69
767 1568 9.495754 GTGCTTTTAAGATCTATGCAGTTTTAG 57.504 33.333 0.00 0.00 0.00 1.85
768 1569 9.231297 AGTGCTTTTAAGATCTATGCAGTTTTA 57.769 29.630 0.00 0.00 29.71 1.52
769 1570 8.115490 AGTGCTTTTAAGATCTATGCAGTTTT 57.885 30.769 0.00 0.00 29.71 2.43
770 1571 7.693969 AGTGCTTTTAAGATCTATGCAGTTT 57.306 32.000 0.00 0.00 29.71 2.66
771 1572 8.834465 CATAGTGCTTTTAAGATCTATGCAGTT 58.166 33.333 14.13 6.05 36.05 3.16
772 1573 7.989741 ACATAGTGCTTTTAAGATCTATGCAGT 59.010 33.333 20.78 13.65 40.54 4.40
773 1574 8.281194 CACATAGTGCTTTTAAGATCTATGCAG 58.719 37.037 20.78 15.11 40.54 4.41
774 1575 7.227314 CCACATAGTGCTTTTAAGATCTATGCA 59.773 37.037 20.78 0.00 40.54 3.96
775 1576 7.442364 TCCACATAGTGCTTTTAAGATCTATGC 59.558 37.037 20.78 0.00 40.54 3.14
776 1577 8.893219 TCCACATAGTGCTTTTAAGATCTATG 57.107 34.615 20.04 20.04 41.41 2.23
777 1578 9.717942 GATCCACATAGTGCTTTTAAGATCTAT 57.282 33.333 0.00 0.00 31.34 1.98
778 1579 8.928448 AGATCCACATAGTGCTTTTAAGATCTA 58.072 33.333 0.00 0.00 33.41 1.98
779 1580 7.800092 AGATCCACATAGTGCTTTTAAGATCT 58.200 34.615 0.00 0.00 31.76 2.75
780 1581 8.443953 AAGATCCACATAGTGCTTTTAAGATC 57.556 34.615 0.00 0.00 31.34 2.75
781 1582 9.905713 TTAAGATCCACATAGTGCTTTTAAGAT 57.094 29.630 0.00 0.00 31.34 2.40
782 1583 9.733556 TTTAAGATCCACATAGTGCTTTTAAGA 57.266 29.630 0.00 0.00 31.34 2.10
783 1584 9.994432 CTTTAAGATCCACATAGTGCTTTTAAG 57.006 33.333 0.00 0.00 31.34 1.85
784 1585 8.956426 CCTTTAAGATCCACATAGTGCTTTTAA 58.044 33.333 0.00 0.00 31.34 1.52
785 1586 7.067008 GCCTTTAAGATCCACATAGTGCTTTTA 59.933 37.037 0.00 0.00 31.34 1.52
786 1587 6.127619 GCCTTTAAGATCCACATAGTGCTTTT 60.128 38.462 0.00 0.00 31.34 2.27
787 1588 5.358160 GCCTTTAAGATCCACATAGTGCTTT 59.642 40.000 0.00 0.00 31.34 3.51
788 1589 4.884164 GCCTTTAAGATCCACATAGTGCTT 59.116 41.667 0.00 0.00 31.34 3.91
789 1590 4.080356 TGCCTTTAAGATCCACATAGTGCT 60.080 41.667 0.00 0.00 31.34 4.40
790 1591 4.035675 GTGCCTTTAAGATCCACATAGTGC 59.964 45.833 0.00 0.00 31.34 4.40
791 1592 5.295292 CAGTGCCTTTAAGATCCACATAGTG 59.705 44.000 10.92 0.00 0.00 2.74
792 1593 5.045578 ACAGTGCCTTTAAGATCCACATAGT 60.046 40.000 10.92 5.76 0.00 2.12
793 1594 5.431765 ACAGTGCCTTTAAGATCCACATAG 58.568 41.667 10.92 5.34 0.00 2.23
794 1595 5.435686 ACAGTGCCTTTAAGATCCACATA 57.564 39.130 10.92 0.00 0.00 2.29
795 1596 4.307032 ACAGTGCCTTTAAGATCCACAT 57.693 40.909 10.92 0.31 0.00 3.21
796 1597 3.788227 ACAGTGCCTTTAAGATCCACA 57.212 42.857 10.92 0.00 0.00 4.17
797 1598 4.575885 TGTACAGTGCCTTTAAGATCCAC 58.424 43.478 0.00 0.00 0.00 4.02
798 1599 4.901197 TGTACAGTGCCTTTAAGATCCA 57.099 40.909 0.00 0.00 0.00 3.41
813 1614 2.202878 CGGTGGCGGGATGTACAG 60.203 66.667 0.33 0.00 0.00 2.74
876 1698 0.325933 TGGGAGCACATTGGACTCAG 59.674 55.000 9.54 0.00 31.88 3.35
878 1700 1.211457 AGATGGGAGCACATTGGACTC 59.789 52.381 0.00 0.81 0.00 3.36
886 1708 1.347707 ACTCGAAAAGATGGGAGCACA 59.652 47.619 0.00 0.00 0.00 4.57
887 1709 2.003301 GACTCGAAAAGATGGGAGCAC 58.997 52.381 0.00 0.00 0.00 4.40
942 1764 1.672030 CATCCAGCCACTGTTGCGA 60.672 57.895 0.00 0.00 0.00 5.10
1078 2101 3.254060 ACTTCGTGTTGGATTCGATCTG 58.746 45.455 0.00 0.00 33.72 2.90
1110 2133 3.496875 CTCGGATGCTGCTCCCTCG 62.497 68.421 0.00 0.00 31.04 4.63
1111 2134 2.420890 CTCGGATGCTGCTCCCTC 59.579 66.667 0.00 0.00 31.04 4.30
1362 2388 2.569657 CGGAACACGTCGATGGGA 59.430 61.111 15.27 0.00 37.93 4.37
1445 2471 1.612442 ACTTCCCTGGCGCCTCTAA 60.612 57.895 29.70 15.14 0.00 2.10
1446 2472 2.038975 ACTTCCCTGGCGCCTCTA 59.961 61.111 29.70 6.34 0.00 2.43
1461 2487 2.529389 GTCAGGTCCACCCCCACT 60.529 66.667 0.00 0.00 36.42 4.00
1872 4735 2.030562 CCAACGAACTCCACGCCT 59.969 61.111 0.00 0.00 0.00 5.52
2051 4923 6.920569 AGAACATGTTTGAATATCGTACCC 57.079 37.500 13.36 0.00 0.00 3.69
2068 4940 3.806949 TGGTTTCCTAGGCAAGAACAT 57.193 42.857 2.96 0.00 0.00 2.71
2112 6403 0.104120 TTCCCGGTGCTGATCGTATG 59.896 55.000 0.00 0.00 0.00 2.39
2127 6418 1.715993 GAACAGTCGCTCTTCTTCCC 58.284 55.000 0.00 0.00 0.00 3.97
2266 6561 0.680280 TAAAGAGGCGCTCGAGGAGT 60.680 55.000 15.58 0.00 35.36 3.85
2567 6878 1.813728 GAGTTCCCACGTCTTCCGGT 61.814 60.000 0.00 0.00 42.24 5.28
2652 6963 2.042831 GCCACGCCTTGCTGATCTT 61.043 57.895 0.00 0.00 0.00 2.40
2917 7969 3.996150 TCGTGACGGGATCCTAAATAC 57.004 47.619 12.58 4.37 0.00 1.89
2948 8000 1.469940 CGTGCTGGTGGTCAGATAGTC 60.470 57.143 0.00 0.00 46.18 2.59
2963 8015 3.648339 ACTTGCATCAAAATTCGTGCT 57.352 38.095 0.00 0.00 38.37 4.40
2977 8029 2.555782 GCGCGTGATGAACTTGCA 59.444 55.556 8.43 0.00 0.00 4.08
2991 8043 3.781162 GTTCGTAACGGGTGGCGC 61.781 66.667 0.00 0.00 0.00 6.53
2994 8047 1.734117 GACGGTTCGTAACGGGTGG 60.734 63.158 4.08 0.00 41.37 4.61
3000 8053 2.429069 ACGCGGACGGTTCGTAAC 60.429 61.111 12.47 0.00 46.04 2.50
3027 8080 3.535561 CATCTAAAAGGGTCACGCTCAT 58.464 45.455 0.00 0.00 0.00 2.90
3032 8085 1.408266 CCCCCATCTAAAAGGGTCACG 60.408 57.143 0.00 0.00 43.89 4.35
3033 8086 2.437085 CCCCCATCTAAAAGGGTCAC 57.563 55.000 0.00 0.00 43.89 3.67
3044 8097 3.083997 GGCGTCTCACCCCCATCT 61.084 66.667 0.00 0.00 0.00 2.90
3045 8098 4.176752 GGGCGTCTCACCCCCATC 62.177 72.222 0.00 0.00 42.01 3.51
3114 8175 2.159379 GGAATCGAAAGTGATGGTTGCC 60.159 50.000 0.00 0.00 0.00 4.52
3129 8190 1.873591 GGGTGGAATCGAATGGAATCG 59.126 52.381 0.00 0.00 44.04 3.34
3130 8191 1.873591 CGGGTGGAATCGAATGGAATC 59.126 52.381 0.00 0.00 0.00 2.52
3131 8192 1.488812 TCGGGTGGAATCGAATGGAAT 59.511 47.619 0.00 0.00 32.11 3.01
3132 8193 0.906066 TCGGGTGGAATCGAATGGAA 59.094 50.000 0.00 0.00 32.11 3.53
3133 8194 0.177141 GTCGGGTGGAATCGAATGGA 59.823 55.000 0.00 0.00 37.14 3.41
3134 8195 0.814010 GGTCGGGTGGAATCGAATGG 60.814 60.000 0.00 0.00 37.14 3.16
3135 8196 0.107897 TGGTCGGGTGGAATCGAATG 60.108 55.000 0.00 0.00 37.14 2.67
3136 8197 0.178068 CTGGTCGGGTGGAATCGAAT 59.822 55.000 0.00 0.00 37.14 3.34
3137 8198 0.901114 TCTGGTCGGGTGGAATCGAA 60.901 55.000 0.00 0.00 37.14 3.71
3138 8199 0.686441 ATCTGGTCGGGTGGAATCGA 60.686 55.000 0.00 0.00 0.00 3.59
3150 8211 0.390860 CCCTCATCGGTGATCTGGTC 59.609 60.000 0.00 0.00 32.98 4.02
3151 8212 1.050988 CCCCTCATCGGTGATCTGGT 61.051 60.000 0.00 0.00 32.98 4.00
3152 8213 1.750930 CCCCTCATCGGTGATCTGG 59.249 63.158 0.00 0.01 32.98 3.86
3154 8215 0.561184 TACCCCCTCATCGGTGATCT 59.439 55.000 0.00 0.00 32.98 2.75
3155 8216 1.276421 CATACCCCCTCATCGGTGATC 59.724 57.143 0.00 0.00 32.98 2.92
3159 8220 1.054406 CCACATACCCCCTCATCGGT 61.054 60.000 0.00 0.00 36.08 4.69
3164 8225 2.305607 GCCACCACATACCCCCTCA 61.306 63.158 0.00 0.00 0.00 3.86
3170 8231 1.369091 CGAGCAAGCCACCACATACC 61.369 60.000 0.00 0.00 0.00 2.73
3173 8234 1.968017 CACGAGCAAGCCACCACAT 60.968 57.895 0.00 0.00 0.00 3.21
3209 8277 1.139947 ACCGCTTTCTCGAGCTAGC 59.860 57.895 21.59 21.59 40.52 3.42
3226 8294 4.819761 TGCATCCTCGAGCGCCAC 62.820 66.667 6.99 0.00 0.00 5.01
3257 8326 2.126071 CTCGATTGTGACCGCCGT 60.126 61.111 0.00 0.00 0.00 5.68
3300 8369 0.880278 CCATTACCATGTCGCCGAGG 60.880 60.000 0.00 0.00 0.00 4.63
3308 8377 6.252599 TCAGATTTAGCTCCATTACCATGT 57.747 37.500 0.00 0.00 0.00 3.21
3337 8406 3.286404 TCGGGACCACTTATCCGAA 57.714 52.632 0.00 0.00 46.93 4.30
3347 8416 2.005370 AGACACTTAGTTCGGGACCA 57.995 50.000 0.00 0.00 0.00 4.02
3393 8462 5.163332 CGGAGAGCCTAAACCTAGGTAAAAT 60.163 44.000 16.67 4.77 45.96 1.82
3401 8470 3.288964 CTCTTCGGAGAGCCTAAACCTA 58.711 50.000 8.06 0.00 42.72 3.08
3434 8503 7.809806 CCCAAAGCAATAAAAACAAACAAAACA 59.190 29.630 0.00 0.00 0.00 2.83
3461 8530 6.893583 AGATTATCTGTACTTTGCACTCCAT 58.106 36.000 0.00 0.00 0.00 3.41
3504 8573 4.069304 CTGAGGGATAGGACTCTAGAACG 58.931 52.174 0.00 0.00 34.84 3.95
3525 8595 6.163110 AGACCCCCGATACCTATATAAACT 57.837 41.667 0.00 0.00 0.00 2.66
3540 8610 1.264295 GCTATAACCCTAGACCCCCG 58.736 60.000 0.00 0.00 0.00 5.73
3556 8627 2.042464 CCCAAGCTGACTAGGATGCTA 58.958 52.381 6.15 0.00 35.09 3.49
3560 8631 2.225792 GGCCCAAGCTGACTAGGAT 58.774 57.895 0.00 0.00 39.73 3.24
3573 8644 0.035820 GTGGTGAATTAGACGGCCCA 60.036 55.000 0.00 0.00 0.00 5.36
3574 8645 0.035820 TGTGGTGAATTAGACGGCCC 60.036 55.000 0.00 0.00 0.00 5.80
3576 8647 2.423577 ACTTGTGGTGAATTAGACGGC 58.576 47.619 0.00 0.00 0.00 5.68
3577 8648 5.432885 AAAACTTGTGGTGAATTAGACGG 57.567 39.130 0.00 0.00 0.00 4.79
3578 8649 5.137403 CGAAAACTTGTGGTGAATTAGACG 58.863 41.667 0.00 0.00 0.00 4.18
3579 8650 5.449304 CCGAAAACTTGTGGTGAATTAGAC 58.551 41.667 0.00 0.00 0.00 2.59
3580 8651 4.517453 CCCGAAAACTTGTGGTGAATTAGA 59.483 41.667 0.00 0.00 0.00 2.10
3581 8652 4.517453 TCCCGAAAACTTGTGGTGAATTAG 59.483 41.667 0.00 0.00 0.00 1.73
3582 8653 4.462133 TCCCGAAAACTTGTGGTGAATTA 58.538 39.130 0.00 0.00 0.00 1.40
3585 8656 2.294074 CTCCCGAAAACTTGTGGTGAA 58.706 47.619 0.00 0.00 0.00 3.18
3587 8658 0.310854 GCTCCCGAAAACTTGTGGTG 59.689 55.000 0.00 0.00 0.00 4.17
3588 8659 0.822121 GGCTCCCGAAAACTTGTGGT 60.822 55.000 0.00 0.00 0.00 4.16
3589 8660 0.537371 AGGCTCCCGAAAACTTGTGG 60.537 55.000 0.00 0.00 0.00 4.17
3590 8661 1.266989 GAAGGCTCCCGAAAACTTGTG 59.733 52.381 0.00 0.00 0.00 3.33
3603 8706 3.179443 TGACGTATGAATGGAAGGCTC 57.821 47.619 0.00 0.00 0.00 4.70
3617 8720 3.829044 CCGACGGCCCATGACGTA 61.829 66.667 0.00 0.00 44.24 3.57
3634 8737 1.079336 GTTCAGGAGTGGGTACGCC 60.079 63.158 7.55 0.31 46.01 5.68
3660 8764 2.120718 AGGACAAGCCGAGGACCT 59.879 61.111 0.00 0.00 43.43 3.85
3741 8845 4.812626 GTCTAGACTTGAAAACCGGTTCAA 59.187 41.667 22.53 20.04 43.51 2.69
3751 8855 4.703897 CCAAGGTGTGTCTAGACTTGAAA 58.296 43.478 23.01 0.00 40.60 2.69
3760 8864 1.267121 GGAGAGCCAAGGTGTGTCTA 58.733 55.000 0.00 0.00 0.00 2.59
3761 8865 1.484444 GGGAGAGCCAAGGTGTGTCT 61.484 60.000 0.00 0.00 35.15 3.41
3762 8866 1.003233 GGGAGAGCCAAGGTGTGTC 60.003 63.158 0.00 0.00 35.15 3.67
3763 8867 2.883828 CGGGAGAGCCAAGGTGTGT 61.884 63.158 0.00 0.00 35.15 3.72
3764 8868 2.046892 CGGGAGAGCCAAGGTGTG 60.047 66.667 0.00 0.00 35.15 3.82
3765 8869 3.322466 CCGGGAGAGCCAAGGTGT 61.322 66.667 0.00 0.00 35.15 4.16
3766 8870 4.101448 CCCGGGAGAGCCAAGGTG 62.101 72.222 18.48 0.00 35.15 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.