Multiple sequence alignment - TraesCS6A01G162700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G162700 chr6A 100.000 6172 0 0 1 6172 158051807 158045636 0.000000e+00 11398.0
1 TraesCS6A01G162700 chr6A 85.246 122 18 0 3901 4022 158047783 158047904 6.490000e-25 126.0
2 TraesCS6A01G162700 chr6A 92.754 69 3 2 3957 4023 507148573 507148505 1.420000e-16 99.0
3 TraesCS6A01G162700 chr6D 93.973 2323 84 17 1624 3911 123150014 123152315 0.000000e+00 3463.0
4 TraesCS6A01G162700 chr6D 93.810 1454 78 10 3 1449 123148574 123150022 0.000000e+00 2176.0
5 TraesCS6A01G162700 chr6D 94.196 1430 55 13 3965 5384 123152311 123153722 0.000000e+00 2156.0
6 TraesCS6A01G162700 chr6D 93.051 662 24 10 5383 6032 123153757 123154408 0.000000e+00 948.0
7 TraesCS6A01G162700 chr6D 91.848 184 11 4 1446 1625 370692017 370692200 2.860000e-63 254.0
8 TraesCS6A01G162700 chr6D 87.970 133 14 2 1 132 50087176 50087045 8.280000e-34 156.0
9 TraesCS6A01G162700 chr6D 93.878 49 2 1 3907 3954 23096098 23096050 8.580000e-09 73.1
10 TraesCS6A01G162700 chr6B 96.337 1556 48 6 2356 3911 217157513 217159059 0.000000e+00 2549.0
11 TraesCS6A01G162700 chr6B 93.990 1431 59 14 3965 5384 217159055 217160469 0.000000e+00 2141.0
12 TraesCS6A01G162700 chr6B 93.106 1262 74 11 1 1253 217154462 217155719 0.000000e+00 1836.0
13 TraesCS6A01G162700 chr6B 92.348 758 29 5 1624 2363 217156744 217157490 0.000000e+00 1051.0
14 TraesCS6A01G162700 chr6B 85.180 722 49 17 5383 6051 217160504 217161220 0.000000e+00 688.0
15 TraesCS6A01G162700 chr6B 83.838 495 61 15 4096 4580 704707284 704706799 2.620000e-123 453.0
16 TraesCS6A01G162700 chr6B 81.688 557 67 23 3375 3907 704707897 704707352 1.230000e-116 431.0
17 TraesCS6A01G162700 chr6B 97.585 207 5 0 1243 1449 217156546 217156752 7.610000e-94 355.0
18 TraesCS6A01G162700 chr6B 81.683 404 44 11 3499 3878 157869374 157868977 6.010000e-80 309.0
19 TraesCS6A01G162700 chrUn 96.931 391 7 3 2651 3041 480537746 480537361 0.000000e+00 651.0
20 TraesCS6A01G162700 chrUn 82.134 403 45 11 3499 3878 94306612 94306214 2.780000e-83 320.0
21 TraesCS6A01G162700 chrUn 88.889 63 4 3 2629 2689 30123192 30123131 2.390000e-09 75.0
22 TraesCS6A01G162700 chr7D 83.303 557 58 24 3375 3907 403149079 403149624 1.200000e-131 481.0
23 TraesCS6A01G162700 chr7D 84.400 500 62 13 4090 4580 403149686 403150178 1.560000e-130 477.0
24 TraesCS6A01G162700 chr7D 88.722 133 13 2 1 132 484967338 484967469 1.780000e-35 161.0
25 TraesCS6A01G162700 chr7D 96.667 60 2 0 3956 4015 571261936 571261995 3.940000e-17 100.0
26 TraesCS6A01G162700 chr2D 83.633 501 62 16 4090 4580 91116375 91116865 2.620000e-123 453.0
27 TraesCS6A01G162700 chr2D 82.540 504 70 13 4090 4580 43248368 43248866 1.590000e-115 427.0
28 TraesCS6A01G162700 chr2D 83.261 460 45 18 3470 3907 43247857 43248306 1.610000e-105 394.0
29 TraesCS6A01G162700 chr2D 92.614 176 11 2 1449 1623 47055534 47055360 1.030000e-62 252.0
30 TraesCS6A01G162700 chr2D 96.667 60 2 0 3957 4016 555158758 555158699 3.940000e-17 100.0
31 TraesCS6A01G162700 chr5B 82.267 547 62 23 3375 3897 325720002 325720537 2.040000e-119 440.0
32 TraesCS6A01G162700 chr5B 83.061 490 64 15 4101 4580 325720609 325721089 1.590000e-115 427.0
33 TraesCS6A01G162700 chr5B 87.879 132 14 2 1 131 374783981 374784111 2.980000e-33 154.0
34 TraesCS6A01G162700 chr1B 83.030 495 64 16 4096 4580 459065153 459064669 1.230000e-116 431.0
35 TraesCS6A01G162700 chr1B 81.508 557 68 23 3375 3907 459065766 459065221 5.720000e-115 425.0
36 TraesCS6A01G162700 chr1B 84.783 322 36 8 3566 3878 456157780 456157463 1.670000e-80 311.0
37 TraesCS6A01G162700 chr1B 89.552 67 7 0 2627 2693 237010409 237010343 1.100000e-12 86.1
38 TraesCS6A01G162700 chr3A 81.785 549 67 22 3382 3907 125401485 125400947 4.420000e-116 429.0
39 TraesCS6A01G162700 chr3A 93.617 47 3 0 3909 3955 110380130 110380084 3.090000e-08 71.3
40 TraesCS6A01G162700 chr4A 81.227 554 58 23 3375 3907 176614649 176615177 7.450000e-109 405.0
41 TraesCS6A01G162700 chr7B 88.081 344 35 6 4090 4432 712091831 712092169 2.680000e-108 403.0
42 TraesCS6A01G162700 chr5D 84.494 316 35 9 3566 3871 463016679 463016990 3.620000e-77 300.0
43 TraesCS6A01G162700 chr5D 92.655 177 11 2 1449 1623 9992974 9992798 2.860000e-63 254.0
44 TraesCS6A01G162700 chr5D 89.286 196 15 4 1445 1634 348748659 348748464 2.220000e-59 241.0
45 TraesCS6A01G162700 chr1A 92.737 179 9 3 1449 1623 203454166 203453988 7.940000e-64 255.0
46 TraesCS6A01G162700 chr1A 83.700 227 32 5 396 620 358764268 358764491 6.270000e-50 209.0
47 TraesCS6A01G162700 chr1A 83.846 130 12 3 3895 4016 286917048 286917176 1.410000e-21 115.0
48 TraesCS6A01G162700 chr1A 87.500 72 6 2 2628 2696 139555447 139555376 5.130000e-11 80.5
49 TraesCS6A01G162700 chr7A 90.404 198 12 5 1440 1630 701211923 701212120 2.860000e-63 254.0
50 TraesCS6A01G162700 chr7A 98.246 57 1 0 3958 4014 84745764 84745820 3.940000e-17 100.0
51 TraesCS6A01G162700 chr7A 97.959 49 1 0 3909 3957 84745823 84745775 1.100000e-12 86.1
52 TraesCS6A01G162700 chr1D 92.179 179 11 3 1450 1625 222282719 222282897 3.690000e-62 250.0
53 TraesCS6A01G162700 chr1D 89.764 127 12 1 1 126 49072692 49072566 1.780000e-35 161.0
54 TraesCS6A01G162700 chr1D 90.164 122 11 1 3 123 80376820 80376941 2.300000e-34 158.0
55 TraesCS6A01G162700 chr5A 90.256 195 11 6 1443 1630 101083459 101083266 1.330000e-61 248.0
56 TraesCS6A01G162700 chr5A 96.610 59 2 0 3956 4014 588551217 588551159 1.420000e-16 99.0
57 TraesCS6A01G162700 chr5A 90.141 71 5 1 2629 2697 447544569 447544499 2.370000e-14 91.6
58 TraesCS6A01G162700 chr5A 95.745 47 2 0 3909 3955 588551156 588551202 6.630000e-10 76.8
59 TraesCS6A01G162700 chr5A 86.957 69 6 2 2629 2694 422040356 422040424 2.390000e-09 75.0
60 TraesCS6A01G162700 chr4D 90.256 195 12 3 1443 1630 35722296 35722490 1.330000e-61 248.0
61 TraesCS6A01G162700 chr4D 89.516 124 12 1 1 123 344589649 344589772 8.280000e-34 156.0
62 TraesCS6A01G162700 chr2B 89.764 127 11 2 1 126 368178121 368177996 1.780000e-35 161.0
63 TraesCS6A01G162700 chr2B 96.610 59 2 0 3956 4014 3463022 3463080 1.420000e-16 99.0
64 TraesCS6A01G162700 chr3D 88.525 122 11 3 6052 6171 373491647 373491767 1.790000e-30 145.0
65 TraesCS6A01G162700 chr3D 96.552 58 2 0 3957 4014 5400369 5400426 5.090000e-16 97.1
66 TraesCS6A01G162700 chr2A 88.060 67 6 2 2629 2695 196516142 196516078 1.840000e-10 78.7
67 TraesCS6A01G162700 chr2A 93.478 46 3 0 3906 3951 30798951 30798906 1.110000e-07 69.4
68 TraesCS6A01G162700 chr2A 93.478 46 3 0 3906 3951 30818671 30818626 1.110000e-07 69.4
69 TraesCS6A01G162700 chr2A 91.837 49 4 0 3905 3953 38346644 38346692 1.110000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G162700 chr6A 158045636 158051807 6171 True 11398.000000 11398 100.0000 1 6172 1 chr6A.!!$R1 6171
1 TraesCS6A01G162700 chr6D 123148574 123154408 5834 False 2185.750000 3463 93.7575 3 6032 4 chr6D.!!$F2 6029
2 TraesCS6A01G162700 chr6B 217154462 217161220 6758 False 1436.666667 2549 93.0910 1 6051 6 chr6B.!!$F1 6050
3 TraesCS6A01G162700 chr6B 704706799 704707897 1098 True 442.000000 453 82.7630 3375 4580 2 chr6B.!!$R2 1205
4 TraesCS6A01G162700 chr7D 403149079 403150178 1099 False 479.000000 481 83.8515 3375 4580 2 chr7D.!!$F3 1205
5 TraesCS6A01G162700 chr2D 43247857 43248866 1009 False 410.500000 427 82.9005 3470 4580 2 chr2D.!!$F2 1110
6 TraesCS6A01G162700 chr5B 325720002 325721089 1087 False 433.500000 440 82.6640 3375 4580 2 chr5B.!!$F2 1205
7 TraesCS6A01G162700 chr1B 459064669 459065766 1097 True 428.000000 431 82.2690 3375 4580 2 chr1B.!!$R3 1205
8 TraesCS6A01G162700 chr3A 125400947 125401485 538 True 429.000000 429 81.7850 3382 3907 1 chr3A.!!$R2 525
9 TraesCS6A01G162700 chr4A 176614649 176615177 528 False 405.000000 405 81.2270 3375 3907 1 chr4A.!!$F1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
256 258 0.975887 CCTTGGGGGTTGTTTGGATG 59.024 55.000 0.00 0.00 0.00 3.51 F
2031 2895 0.378962 TGTTTTGGCGTTGGAACTCG 59.621 50.000 0.00 0.00 0.00 4.18 F
2041 2905 0.536460 TTGGAACTCGGGCAGTTTCC 60.536 55.000 11.68 11.68 46.10 3.13 F
2079 2943 0.606401 CAACCCTTGATGGTCTGCGT 60.606 55.000 0.00 0.00 37.76 5.24 F
3740 4667 1.603931 GCTCTGCCTTCCTTTTTGCAC 60.604 52.381 0.00 0.00 0.00 4.57 F
4554 5501 0.029834 CTGGCCGCTGATTTGCATAC 59.970 55.000 0.00 0.00 0.00 2.39 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2137 3001 0.239082 TACAGGTGCACGTGTAGTCG 59.761 55.000 36.10 16.97 43.64 4.18 R
3294 4205 1.401905 GGGTTCATTAAAGGCAGCTCG 59.598 52.381 0.00 0.00 0.00 5.03 R
3877 4811 2.029380 CGATAGTGTGTGGACAGGAACA 60.029 50.000 0.00 0.00 30.74 3.18 R
3934 4868 5.085636 CGATTTGAACTACCAAAACGTCA 57.914 39.130 9.71 0.00 42.96 4.35 R
4918 5871 0.619255 TCAGCCCCGTTGAATCCCTA 60.619 55.000 0.00 0.00 0.00 3.53 R
6005 7059 0.033504 GACCAAAGCTCGACACTCCA 59.966 55.000 0.00 0.00 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.077386 CCAACGGTATAACTTTTGTTAACATGT 58.923 33.333 9.56 6.38 46.51 3.21
80 81 7.839680 AGTTAAATCTTTGGTCAAATCTGGT 57.160 32.000 0.00 0.00 0.00 4.00
84 85 7.595819 AAATCTTTGGTCAAATCTGGTACAA 57.404 32.000 0.00 0.00 38.70 2.41
123 124 6.903340 AATAAACCAGGACCAAGGTAGTAT 57.097 37.500 8.87 7.46 37.07 2.12
176 178 9.938280 AAATAAAATTTTAGGTTGGGCTTCTAC 57.062 29.630 15.45 0.00 0.00 2.59
182 184 7.457024 TTTTAGGTTGGGCTTCTACAATAAC 57.543 36.000 0.00 0.00 0.00 1.89
189 191 4.534500 TGGGCTTCTACAATAACCTGAGAA 59.466 41.667 0.00 0.00 0.00 2.87
193 195 5.104900 GCTTCTACAATAACCTGAGAAGGGA 60.105 44.000 10.91 0.00 42.16 4.20
196 198 4.287766 ACAATAACCTGAGAAGGGACAC 57.712 45.455 0.00 0.00 0.00 3.67
256 258 0.975887 CCTTGGGGGTTGTTTGGATG 59.024 55.000 0.00 0.00 0.00 3.51
434 439 9.492973 ACTATTTGCTATTGTTTCAAAAAGCAT 57.507 25.926 17.15 10.22 39.50 3.79
462 467 9.646522 ATTTTGCAATACTGGATCCTAACTAAT 57.353 29.630 14.23 0.00 0.00 1.73
507 513 3.378112 CCACGCCATCATACTTTCACAAT 59.622 43.478 0.00 0.00 0.00 2.71
633 640 6.485648 ACAAAACTACTACTAGCAAAACTGGG 59.514 38.462 0.00 0.00 0.00 4.45
641 648 7.459234 ACTACTAGCAAAACTGGGTTTTCTAT 58.541 34.615 5.55 0.00 42.78 1.98
649 656 9.752961 GCAAAACTGGGTTTTCTATTAACTAAA 57.247 29.630 5.55 0.00 42.78 1.85
689 697 6.655848 TGGCTAATACGTTTATCCAAACAACT 59.344 34.615 0.00 0.00 43.58 3.16
706 714 6.420913 AACAACTACTTAGCCTTTCAGAGA 57.579 37.500 0.00 0.00 0.00 3.10
707 715 6.031751 ACAACTACTTAGCCTTTCAGAGAG 57.968 41.667 0.00 0.00 0.00 3.20
801 809 8.755018 GCATGTGTAAAATAAATTGGACTATGC 58.245 33.333 0.00 0.00 0.00 3.14
822 830 5.243981 TGCCAACATCAATTATTTTGGGTG 58.756 37.500 7.86 0.00 43.12 4.61
827 835 5.588845 ACATCAATTATTTTGGGTGGGAGA 58.411 37.500 0.00 0.00 0.00 3.71
882 890 6.263617 ACAACCTAACATCCACAATTTACGTT 59.736 34.615 0.00 0.00 0.00 3.99
909 917 4.094442 GGTTACAAGAAAGCTATTCCGTGG 59.906 45.833 0.00 0.00 0.00 4.94
915 923 5.416271 AGAAAGCTATTCCGTGGTTAAGA 57.584 39.130 0.00 0.00 0.00 2.10
1066 1076 2.754946 ATCCGACTACCGCAAGAAAA 57.245 45.000 0.00 0.00 43.02 2.29
1073 1083 2.484264 ACTACCGCAAGAAAATGCTCAC 59.516 45.455 0.00 0.00 44.21 3.51
1086 1096 2.583520 CTCACCTGCAGGGAGCTC 59.416 66.667 35.42 4.71 45.94 4.09
1231 1241 3.123621 GTGCAGAGTAGATGTTGTTTCCG 59.876 47.826 0.00 0.00 0.00 4.30
1235 1245 1.349688 AGTAGATGTTGTTTCCGGGCA 59.650 47.619 0.00 0.00 0.00 5.36
1280 2127 4.788679 TGATTGCTTGATGTGGATCTGAT 58.211 39.130 0.00 0.00 0.00 2.90
1359 2206 6.365518 GGTCGACTCCTTAGAAAACTTAACAG 59.634 42.308 16.46 0.00 0.00 3.16
1436 2283 1.636570 GCGAAGTTCCTTCTTCCGCC 61.637 60.000 0.00 0.00 40.21 6.13
1440 2287 2.586648 AGTTCCTTCTTCCGCCATTT 57.413 45.000 0.00 0.00 0.00 2.32
1441 2288 2.876581 AGTTCCTTCTTCCGCCATTTT 58.123 42.857 0.00 0.00 0.00 1.82
1442 2289 4.028993 AGTTCCTTCTTCCGCCATTTTA 57.971 40.909 0.00 0.00 0.00 1.52
1443 2290 4.010349 AGTTCCTTCTTCCGCCATTTTAG 58.990 43.478 0.00 0.00 0.00 1.85
1444 2291 3.992943 TCCTTCTTCCGCCATTTTAGA 57.007 42.857 0.00 0.00 0.00 2.10
1445 2292 4.295141 TCCTTCTTCCGCCATTTTAGAA 57.705 40.909 0.00 0.00 0.00 2.10
1446 2293 4.658063 TCCTTCTTCCGCCATTTTAGAAA 58.342 39.130 0.00 0.00 0.00 2.52
1447 2294 5.261216 TCCTTCTTCCGCCATTTTAGAAAT 58.739 37.500 0.00 0.00 0.00 2.17
1448 2295 6.419791 TCCTTCTTCCGCCATTTTAGAAATA 58.580 36.000 0.00 0.00 0.00 1.40
1449 2296 6.542370 TCCTTCTTCCGCCATTTTAGAAATAG 59.458 38.462 0.00 0.00 0.00 1.73
1450 2297 6.238759 CCTTCTTCCGCCATTTTAGAAATAGG 60.239 42.308 0.00 0.00 0.00 2.57
1451 2298 5.996644 TCTTCCGCCATTTTAGAAATAGGA 58.003 37.500 0.00 4.35 0.00 2.94
1452 2299 6.601332 TCTTCCGCCATTTTAGAAATAGGAT 58.399 36.000 0.00 0.00 0.00 3.24
1453 2300 6.710744 TCTTCCGCCATTTTAGAAATAGGATC 59.289 38.462 0.00 0.00 0.00 3.36
1454 2301 6.187727 TCCGCCATTTTAGAAATAGGATCT 57.812 37.500 0.00 0.00 0.00 2.75
1455 2302 5.997746 TCCGCCATTTTAGAAATAGGATCTG 59.002 40.000 0.00 0.00 0.00 2.90
1456 2303 5.765182 CCGCCATTTTAGAAATAGGATCTGT 59.235 40.000 0.00 0.00 0.00 3.41
1457 2304 6.073003 CCGCCATTTTAGAAATAGGATCTGTC 60.073 42.308 0.00 0.00 0.00 3.51
1458 2305 6.708054 CGCCATTTTAGAAATAGGATCTGTCT 59.292 38.462 0.00 0.00 0.00 3.41
1459 2306 7.872993 CGCCATTTTAGAAATAGGATCTGTCTA 59.127 37.037 0.00 0.00 0.00 2.59
1460 2307 9.213799 GCCATTTTAGAAATAGGATCTGTCTAG 57.786 37.037 0.00 0.00 0.00 2.43
1461 2308 9.717942 CCATTTTAGAAATAGGATCTGTCTAGG 57.282 37.037 0.00 0.00 0.00 3.02
1464 2311 9.488762 TTTTAGAAATAGGATCTGTCTAGGACA 57.511 33.333 0.43 0.43 40.50 4.02
1465 2312 6.969993 AGAAATAGGATCTGTCTAGGACAC 57.030 41.667 0.00 0.00 37.67 3.67
1466 2313 6.436027 AGAAATAGGATCTGTCTAGGACACA 58.564 40.000 0.00 0.00 37.67 3.72
1467 2314 7.072562 AGAAATAGGATCTGTCTAGGACACAT 58.927 38.462 0.00 0.00 37.67 3.21
1468 2315 6.909550 AATAGGATCTGTCTAGGACACATC 57.090 41.667 7.18 7.18 37.67 3.06
1469 2316 4.534647 AGGATCTGTCTAGGACACATCT 57.465 45.455 12.87 1.48 37.83 2.90
1470 2317 5.654901 AGGATCTGTCTAGGACACATCTA 57.345 43.478 12.87 0.00 37.83 1.98
1471 2318 5.630121 AGGATCTGTCTAGGACACATCTAG 58.370 45.833 12.87 0.00 37.83 2.43
1472 2319 5.371176 AGGATCTGTCTAGGACACATCTAGA 59.629 44.000 12.87 0.00 37.83 2.43
1473 2320 6.045459 AGGATCTGTCTAGGACACATCTAGAT 59.955 42.308 12.87 0.00 43.25 1.98
1474 2321 6.150976 GGATCTGTCTAGGACACATCTAGATG 59.849 46.154 27.63 27.63 43.25 2.90
1489 2336 7.691430 CATCTAGATGTGACATAGTTGTGTC 57.309 40.000 22.42 2.47 46.75 3.67
1499 2346 6.337853 GACATAGTTGTGTCACATCTAAGC 57.662 41.667 21.83 13.17 46.04 3.09
1500 2347 6.042638 ACATAGTTGTGTCACATCTAAGCT 57.957 37.500 21.83 8.27 34.99 3.74
1501 2348 7.170393 ACATAGTTGTGTCACATCTAAGCTA 57.830 36.000 21.83 11.64 34.99 3.32
1502 2349 7.611770 ACATAGTTGTGTCACATCTAAGCTAA 58.388 34.615 21.83 6.24 34.99 3.09
1503 2350 8.260818 ACATAGTTGTGTCACATCTAAGCTAAT 58.739 33.333 21.83 7.93 34.99 1.73
1504 2351 6.974932 AGTTGTGTCACATCTAAGCTAATG 57.025 37.500 13.75 0.00 0.00 1.90
1505 2352 6.467677 AGTTGTGTCACATCTAAGCTAATGT 58.532 36.000 13.75 4.03 36.56 2.71
1506 2353 6.936900 AGTTGTGTCACATCTAAGCTAATGTT 59.063 34.615 13.75 0.00 33.92 2.71
1507 2354 6.968131 TGTGTCACATCTAAGCTAATGTTC 57.032 37.500 0.18 4.94 33.92 3.18
1508 2355 6.463360 TGTGTCACATCTAAGCTAATGTTCA 58.537 36.000 0.18 6.85 33.92 3.18
1509 2356 6.368791 TGTGTCACATCTAAGCTAATGTTCAC 59.631 38.462 20.27 20.27 37.93 3.18
1510 2357 6.591834 GTGTCACATCTAAGCTAATGTTCACT 59.408 38.462 20.06 0.00 36.41 3.41
1511 2358 6.813649 TGTCACATCTAAGCTAATGTTCACTC 59.186 38.462 6.58 0.00 33.92 3.51
1512 2359 7.038659 GTCACATCTAAGCTAATGTTCACTCT 58.961 38.462 6.58 0.00 33.92 3.24
1513 2360 7.009999 GTCACATCTAAGCTAATGTTCACTCTG 59.990 40.741 6.58 0.00 33.92 3.35
1514 2361 6.815641 CACATCTAAGCTAATGTTCACTCTGT 59.184 38.462 6.58 0.00 33.92 3.41
1515 2362 7.009999 CACATCTAAGCTAATGTTCACTCTGTC 59.990 40.741 6.58 0.00 33.92 3.51
1516 2363 6.842437 TCTAAGCTAATGTTCACTCTGTCT 57.158 37.500 0.00 0.00 0.00 3.41
1517 2364 6.625362 TCTAAGCTAATGTTCACTCTGTCTG 58.375 40.000 0.00 0.00 0.00 3.51
1518 2365 4.881019 AGCTAATGTTCACTCTGTCTGT 57.119 40.909 0.00 0.00 0.00 3.41
1519 2366 4.564041 AGCTAATGTTCACTCTGTCTGTG 58.436 43.478 0.00 0.00 36.82 3.66
1520 2367 3.681897 GCTAATGTTCACTCTGTCTGTGG 59.318 47.826 0.00 0.00 36.21 4.17
1521 2368 3.845781 AATGTTCACTCTGTCTGTGGT 57.154 42.857 0.00 0.00 36.21 4.16
1522 2369 2.890808 TGTTCACTCTGTCTGTGGTC 57.109 50.000 0.00 0.00 36.21 4.02
1523 2370 2.107366 TGTTCACTCTGTCTGTGGTCA 58.893 47.619 0.00 0.00 36.21 4.02
1524 2371 2.499693 TGTTCACTCTGTCTGTGGTCAA 59.500 45.455 0.00 0.00 36.21 3.18
1525 2372 3.134623 TGTTCACTCTGTCTGTGGTCAAT 59.865 43.478 0.00 0.00 36.21 2.57
1526 2373 4.130118 GTTCACTCTGTCTGTGGTCAATT 58.870 43.478 0.00 0.00 36.21 2.32
1527 2374 4.422073 TCACTCTGTCTGTGGTCAATTT 57.578 40.909 0.00 0.00 36.21 1.82
1528 2375 4.780815 TCACTCTGTCTGTGGTCAATTTT 58.219 39.130 0.00 0.00 36.21 1.82
1529 2376 5.192927 TCACTCTGTCTGTGGTCAATTTTT 58.807 37.500 0.00 0.00 36.21 1.94
1558 2405 5.876612 TTTTTGTTTCTTGTTGCTGCATT 57.123 30.435 1.84 0.00 0.00 3.56
1559 2406 6.974932 TTTTTGTTTCTTGTTGCTGCATTA 57.025 29.167 1.84 0.00 0.00 1.90
1560 2407 7.551035 TTTTTGTTTCTTGTTGCTGCATTAT 57.449 28.000 1.84 0.00 0.00 1.28
1561 2408 8.654230 TTTTTGTTTCTTGTTGCTGCATTATA 57.346 26.923 1.84 0.00 0.00 0.98
1562 2409 8.830201 TTTTGTTTCTTGTTGCTGCATTATAT 57.170 26.923 1.84 0.00 0.00 0.86
1563 2410 9.920133 TTTTGTTTCTTGTTGCTGCATTATATA 57.080 25.926 1.84 0.00 0.00 0.86
1564 2411 8.909708 TTGTTTCTTGTTGCTGCATTATATAC 57.090 30.769 1.84 0.00 0.00 1.47
1565 2412 8.279970 TGTTTCTTGTTGCTGCATTATATACT 57.720 30.769 1.84 0.00 0.00 2.12
1566 2413 8.739039 TGTTTCTTGTTGCTGCATTATATACTT 58.261 29.630 1.84 0.00 0.00 2.24
1567 2414 9.013490 GTTTCTTGTTGCTGCATTATATACTTG 57.987 33.333 1.84 0.00 0.00 3.16
1568 2415 7.864108 TCTTGTTGCTGCATTATATACTTGT 57.136 32.000 1.84 0.00 0.00 3.16
1569 2416 7.696755 TCTTGTTGCTGCATTATATACTTGTG 58.303 34.615 1.84 0.00 0.00 3.33
1570 2417 6.375945 TGTTGCTGCATTATATACTTGTGG 57.624 37.500 1.84 0.00 0.00 4.17
1571 2418 5.299028 TGTTGCTGCATTATATACTTGTGGG 59.701 40.000 1.84 0.00 0.00 4.61
1572 2419 5.303259 TGCTGCATTATATACTTGTGGGA 57.697 39.130 0.00 0.00 0.00 4.37
1573 2420 5.308014 TGCTGCATTATATACTTGTGGGAG 58.692 41.667 0.00 0.00 0.00 4.30
1574 2421 4.154918 GCTGCATTATATACTTGTGGGAGC 59.845 45.833 0.00 0.00 0.00 4.70
1575 2422 5.555017 CTGCATTATATACTTGTGGGAGCT 58.445 41.667 0.00 0.00 0.00 4.09
1576 2423 5.940617 TGCATTATATACTTGTGGGAGCTT 58.059 37.500 0.00 0.00 0.00 3.74
1577 2424 7.073457 TGCATTATATACTTGTGGGAGCTTA 57.927 36.000 0.00 0.00 0.00 3.09
1578 2425 7.161404 TGCATTATATACTTGTGGGAGCTTAG 58.839 38.462 0.00 0.00 0.00 2.18
1579 2426 7.016170 TGCATTATATACTTGTGGGAGCTTAGA 59.984 37.037 0.00 0.00 0.00 2.10
1580 2427 8.043710 GCATTATATACTTGTGGGAGCTTAGAT 58.956 37.037 0.00 0.00 0.00 1.98
1581 2428 9.376075 CATTATATACTTGTGGGAGCTTAGATG 57.624 37.037 0.00 0.00 0.00 2.90
1582 2429 8.492415 TTATATACTTGTGGGAGCTTAGATGT 57.508 34.615 0.00 0.00 0.00 3.06
1583 2430 3.340814 ACTTGTGGGAGCTTAGATGTG 57.659 47.619 0.00 0.00 0.00 3.21
1584 2431 2.906389 ACTTGTGGGAGCTTAGATGTGA 59.094 45.455 0.00 0.00 0.00 3.58
1585 2432 3.265791 CTTGTGGGAGCTTAGATGTGAC 58.734 50.000 0.00 0.00 0.00 3.67
1586 2433 2.256306 TGTGGGAGCTTAGATGTGACA 58.744 47.619 0.00 0.00 0.00 3.58
1587 2434 2.840038 TGTGGGAGCTTAGATGTGACAT 59.160 45.455 0.00 0.00 0.00 3.06
1588 2435 3.118629 TGTGGGAGCTTAGATGTGACATC 60.119 47.826 17.46 17.46 0.00 3.06
1589 2436 2.435805 TGGGAGCTTAGATGTGACATCC 59.564 50.000 21.05 6.28 0.00 3.51
1590 2437 2.703007 GGGAGCTTAGATGTGACATCCT 59.297 50.000 21.05 11.37 0.00 3.24
1591 2438 3.135530 GGGAGCTTAGATGTGACATCCTT 59.864 47.826 21.05 7.22 0.00 3.36
1592 2439 4.345257 GGGAGCTTAGATGTGACATCCTTA 59.655 45.833 21.05 6.22 0.00 2.69
1593 2440 5.163301 GGGAGCTTAGATGTGACATCCTTAA 60.163 44.000 21.05 13.11 0.00 1.85
1594 2441 6.349300 GGAGCTTAGATGTGACATCCTTAAA 58.651 40.000 21.05 10.18 0.00 1.52
1595 2442 6.823689 GGAGCTTAGATGTGACATCCTTAAAA 59.176 38.462 21.05 8.00 0.00 1.52
1596 2443 7.336931 GGAGCTTAGATGTGACATCCTTAAAAA 59.663 37.037 21.05 6.46 0.00 1.94
1597 2444 8.045176 AGCTTAGATGTGACATCCTTAAAAAC 57.955 34.615 21.05 7.56 0.00 2.43
1598 2445 7.665559 AGCTTAGATGTGACATCCTTAAAAACA 59.334 33.333 21.05 0.00 0.00 2.83
1599 2446 8.462016 GCTTAGATGTGACATCCTTAAAAACAT 58.538 33.333 21.05 2.25 0.00 2.71
1600 2447 9.994432 CTTAGATGTGACATCCTTAAAAACATC 57.006 33.333 21.05 5.04 41.61 3.06
1603 2450 9.388506 AGATGTGACATCCTTAAAAACATCTAG 57.611 33.333 21.05 0.00 46.59 2.43
1604 2451 9.383519 GATGTGACATCCTTAAAAACATCTAGA 57.616 33.333 14.48 0.00 39.39 2.43
1605 2452 9.911788 ATGTGACATCCTTAAAAACATCTAGAT 57.088 29.630 0.00 0.00 0.00 1.98
1606 2453 9.166173 TGTGACATCCTTAAAAACATCTAGATG 57.834 33.333 27.63 27.63 44.15 2.90
1684 2532 2.752354 CCGGCAATTCTGGTTCACATTA 59.248 45.455 0.00 0.00 36.43 1.90
1704 2552 2.078392 ACCGCGTTGTTATTTAGGTGG 58.922 47.619 4.92 0.00 36.25 4.61
1720 2568 3.242011 AGGTGGCAATTCTGGTTCAAAT 58.758 40.909 0.00 0.00 0.00 2.32
1722 2570 4.102996 AGGTGGCAATTCTGGTTCAAATTT 59.897 37.500 0.00 0.00 0.00 1.82
1869 2731 4.044952 TCCCCATCTCATTCCATGCATAAT 59.955 41.667 0.00 0.00 0.00 1.28
1870 2732 5.253564 TCCCCATCTCATTCCATGCATAATA 59.746 40.000 0.00 0.00 0.00 0.98
1871 2733 5.953548 CCCCATCTCATTCCATGCATAATAA 59.046 40.000 0.00 0.00 0.00 1.40
1923 2787 8.491152 CATCTCTACTGTTAAAGAGTGTTTGTG 58.509 37.037 6.10 0.00 40.17 3.33
1924 2788 7.553334 TCTCTACTGTTAAAGAGTGTTTGTGT 58.447 34.615 6.10 0.00 40.17 3.72
1960 2824 2.294074 TGCAAAGTGGTGTGTACTTCC 58.706 47.619 0.00 0.00 37.39 3.46
1971 2835 2.037902 TGTGTACTTCCAGGCGATTGAA 59.962 45.455 0.00 0.00 0.00 2.69
1983 2847 7.158021 TCCAGGCGATTGAAATTTACAAAAAT 58.842 30.769 0.00 0.00 36.87 1.82
2011 2875 5.470462 GCTAACTGGGGCAATTAGCAGAAT 61.470 45.833 9.70 0.00 46.56 2.40
2020 2884 4.961511 GCAATTAGCAGAATTGTTTTGGC 58.038 39.130 19.43 6.20 44.79 4.52
2031 2895 0.378962 TGTTTTGGCGTTGGAACTCG 59.621 50.000 0.00 0.00 0.00 4.18
2041 2905 0.536460 TTGGAACTCGGGCAGTTTCC 60.536 55.000 11.68 11.68 46.10 3.13
2079 2943 0.606401 CAACCCTTGATGGTCTGCGT 60.606 55.000 0.00 0.00 37.76 5.24
2133 2997 6.034591 GTGTACTGAGCGATATTTGTACAGT 58.965 40.000 0.00 0.00 40.18 3.55
2134 2998 7.148205 TGTGTACTGAGCGATATTTGTACAGTA 60.148 37.037 0.00 0.00 40.18 2.74
2135 2999 7.606132 GTACTGAGCGATATTTGTACAGTAC 57.394 40.000 15.23 15.23 45.74 2.73
2136 3000 6.203808 ACTGAGCGATATTTGTACAGTACA 57.796 37.500 9.51 9.51 35.77 2.90
2137 3001 6.034591 ACTGAGCGATATTTGTACAGTACAC 58.965 40.000 13.26 0.77 38.63 2.90
2138 3002 5.032220 TGAGCGATATTTGTACAGTACACG 58.968 41.667 13.26 13.47 38.63 4.49
2139 3003 5.163733 TGAGCGATATTTGTACAGTACACGA 60.164 40.000 19.49 10.46 38.63 4.35
2140 3004 5.032863 AGCGATATTTGTACAGTACACGAC 58.967 41.667 19.49 12.64 38.63 4.34
2250 3117 7.097192 GGGAAAACCTTAAAATTGCTAGGAAG 58.903 38.462 2.28 0.00 35.85 3.46
2253 3120 6.835819 AACCTTAAAATTGCTAGGAAGGAC 57.164 37.500 2.28 0.00 37.48 3.85
2363 3239 5.678616 GCTGTAAGTAAAGAGCCTCTCTCTG 60.679 48.000 0.00 0.00 43.92 3.35
2365 3241 9.400168 GCTGTAAGTAAAGAGCCTCTCTCTGTT 62.400 44.444 0.00 0.00 43.92 3.16
2439 3350 9.462606 CCCTGAAAAGTTAAGTATAAATGGTCT 57.537 33.333 0.00 0.00 0.00 3.85
2476 3387 4.699925 TGTACACTTACAAAAGCTCCCT 57.300 40.909 0.00 0.00 35.14 4.20
2494 3405 5.749462 CTCCCTAAGAAATCATGGTTCAGT 58.251 41.667 11.21 3.45 0.00 3.41
2503 3414 8.268850 AGAAATCATGGTTCAGTTACATGTAC 57.731 34.615 4.68 1.30 41.91 2.90
2587 3498 9.109393 ACACGTTTAGCACAAGATGATATATTT 57.891 29.630 0.00 0.00 0.00 1.40
2618 3529 2.761559 TGGCATGTGTACTGTGTACAC 58.238 47.619 25.27 25.27 45.77 2.90
2690 3601 9.793259 ATCACTTGTATTTCTTTACAGAAGGAA 57.207 29.630 0.00 0.00 40.28 3.36
2726 3637 7.280652 CCATGAACTTCAAAGGAATGTTTTTGT 59.719 33.333 7.54 0.00 36.09 2.83
2826 3737 9.313118 GAACCAAGTTGATCAGTTTTATTTTGT 57.687 29.630 3.87 0.00 0.00 2.83
2867 3778 5.006261 GCCACGTGTAAATTTTGCTTTTCTT 59.994 36.000 15.65 0.00 0.00 2.52
3067 3978 6.330250 AGGGAGGTATGATTTAGTAATGCTGT 59.670 38.462 0.00 0.00 0.00 4.40
3085 3996 3.682377 GCTGTTCAGCTTCTTACTCCTTC 59.318 47.826 16.29 0.00 0.00 3.46
3163 4074 3.499737 GCTTCCGGCGATGTGGTG 61.500 66.667 9.30 0.00 0.00 4.17
3294 4205 3.200825 TCAGGGAACTCAGGGAATCAATC 59.799 47.826 0.00 0.00 40.21 2.67
3366 4277 6.544928 CCTCCCAAGGTAAATTTAGCATTT 57.455 37.500 24.95 11.81 37.94 2.32
3448 4360 4.041567 TGTGATGTTGGGAGTCAGTGTATT 59.958 41.667 0.00 0.00 0.00 1.89
3464 4376 8.135529 GTCAGTGTATTCTTGCTTTACCTTTTT 58.864 33.333 0.00 0.00 0.00 1.94
3740 4667 1.603931 GCTCTGCCTTCCTTTTTGCAC 60.604 52.381 0.00 0.00 0.00 4.57
3876 4810 8.491045 TGACCCAGATGTGTCATCTAATTATA 57.509 34.615 11.18 0.00 36.62 0.98
3877 4811 9.104713 TGACCCAGATGTGTCATCTAATTATAT 57.895 33.333 11.18 0.00 36.62 0.86
3911 4845 9.661563 TCCACACACTATCGAATTTTAAGTTAT 57.338 29.630 0.00 0.00 0.00 1.89
3938 4872 8.788806 ACTCTCTCTGTTCCTAAATATATGACG 58.211 37.037 0.00 0.00 0.00 4.35
3939 4873 8.693120 TCTCTCTGTTCCTAAATATATGACGT 57.307 34.615 0.00 0.00 0.00 4.34
3940 4874 9.132923 TCTCTCTGTTCCTAAATATATGACGTT 57.867 33.333 0.00 0.00 0.00 3.99
3941 4875 9.751542 CTCTCTGTTCCTAAATATATGACGTTT 57.248 33.333 0.00 0.00 0.00 3.60
3944 4878 9.104965 TCTGTTCCTAAATATATGACGTTTTGG 57.895 33.333 0.00 0.00 0.00 3.28
3945 4879 8.795842 TGTTCCTAAATATATGACGTTTTGGT 57.204 30.769 0.00 0.00 32.19 3.67
3946 4880 9.887629 TGTTCCTAAATATATGACGTTTTGGTA 57.112 29.630 0.00 0.00 32.19 3.25
3956 4890 5.085636 TGACGTTTTGGTAGTTCAAATCG 57.914 39.130 14.92 14.92 46.50 3.34
3960 4894 6.799786 CGTTTTGGTAGTTCAAATCGTTTT 57.200 33.333 10.66 0.00 41.24 2.43
3961 4895 6.623633 CGTTTTGGTAGTTCAAATCGTTTTG 58.376 36.000 11.87 11.87 41.24 2.44
3962 4896 6.291374 CGTTTTGGTAGTTCAAATCGTTTTGG 60.291 38.462 16.72 1.77 42.10 3.28
3963 4897 5.838531 TTGGTAGTTCAAATCGTTTTGGT 57.161 34.783 16.72 6.80 42.10 3.67
3964 4898 6.939132 TTGGTAGTTCAAATCGTTTTGGTA 57.061 33.333 16.72 5.22 42.10 3.25
3965 4899 6.548441 TGGTAGTTCAAATCGTTTTGGTAG 57.452 37.500 16.72 0.00 42.10 3.18
3966 4900 6.056884 TGGTAGTTCAAATCGTTTTGGTAGT 58.943 36.000 16.72 11.29 42.10 2.73
3967 4901 6.543100 TGGTAGTTCAAATCGTTTTGGTAGTT 59.457 34.615 16.72 4.25 42.10 2.24
3968 4902 7.073883 GGTAGTTCAAATCGTTTTGGTAGTTC 58.926 38.462 16.72 7.90 42.10 3.01
3969 4903 6.687081 AGTTCAAATCGTTTTGGTAGTTCA 57.313 33.333 16.72 0.00 42.10 3.18
3970 4904 7.090953 AGTTCAAATCGTTTTGGTAGTTCAA 57.909 32.000 16.72 2.07 42.10 2.69
3971 4905 7.712797 AGTTCAAATCGTTTTGGTAGTTCAAT 58.287 30.769 16.72 0.00 42.10 2.57
4073 5008 6.987992 TCAAACTTATACCTTCACGTTTGAGT 59.012 34.615 10.29 0.00 42.76 3.41
4086 5021 4.681942 CACGTTTGAGTTCCTGTTAGAGAG 59.318 45.833 0.00 0.00 0.00 3.20
4087 5022 4.341520 ACGTTTGAGTTCCTGTTAGAGAGT 59.658 41.667 0.00 0.00 0.00 3.24
4334 5269 0.958822 AGCTTGGCAAGGTAAAACCG 59.041 50.000 28.87 1.41 44.90 4.44
4355 5290 5.357032 ACCGATATCATCAAGTGTTTTTCCC 59.643 40.000 3.12 0.00 0.00 3.97
4432 5369 2.105649 TCCTTGCCTGAATGTGTGTGTA 59.894 45.455 0.00 0.00 0.00 2.90
4473 5415 5.121105 GCGTGGGTAAAATATACCAGTCTT 58.879 41.667 6.95 0.00 39.31 3.01
4474 5416 5.007332 GCGTGGGTAAAATATACCAGTCTTG 59.993 44.000 6.95 0.00 39.31 3.02
4487 5429 9.911788 ATATACCAGTCTTGAGATGAATTTTGT 57.088 29.630 0.00 0.00 0.00 2.83
4554 5501 0.029834 CTGGCCGCTGATTTGCATAC 59.970 55.000 0.00 0.00 0.00 2.39
4558 5508 2.417243 GGCCGCTGATTTGCATACTTTT 60.417 45.455 0.00 0.00 0.00 2.27
4582 5532 3.964411 TGACTCCCTTCTCTAACATCGA 58.036 45.455 0.00 0.00 0.00 3.59
4600 5550 7.020914 ACATCGAGCATAATTCTTTTCTTCC 57.979 36.000 0.00 0.00 0.00 3.46
4604 5554 5.355350 CGAGCATAATTCTTTTCTTCCTGGT 59.645 40.000 0.00 0.00 0.00 4.00
4618 5568 2.481441 TCCTGGTGCTGTATGGATTCT 58.519 47.619 0.00 0.00 0.00 2.40
4627 5577 5.412594 GTGCTGTATGGATTCTTCTTGACAA 59.587 40.000 0.00 0.00 0.00 3.18
4681 5631 2.275380 GGCAACAAACCGGCCTGAT 61.275 57.895 0.00 0.00 44.32 2.90
4735 5685 5.098893 CGTCTCGACAGAAAGATTGAGATT 58.901 41.667 0.00 0.00 35.22 2.40
4738 5688 5.185828 TCTCGACAGAAAGATTGAGATTCCA 59.814 40.000 0.00 0.00 0.00 3.53
4753 5703 2.163818 TTCCACTACCAAACGAGCAG 57.836 50.000 0.00 0.00 0.00 4.24
4783 5733 8.515414 AGAACAGAAGTACTTAAAATTCATGCC 58.485 33.333 8.42 0.00 0.00 4.40
4786 5736 5.648092 AGAAGTACTTAAAATTCATGCCGCT 59.352 36.000 8.42 0.00 0.00 5.52
4825 5775 7.297936 TGGAGAAATAGATTATGAAGCGGTA 57.702 36.000 0.00 0.00 0.00 4.02
4856 5806 7.063593 ACTGGCTGAAGTGAGTATATCTTAGA 58.936 38.462 0.00 0.00 0.00 2.10
4879 5832 7.838498 AGATAACGTTCTTATCGCACATAAAC 58.162 34.615 2.82 0.00 36.71 2.01
4891 5844 3.674423 GCACATAAACTCTTGTCGCATC 58.326 45.455 0.00 0.00 0.00 3.91
4892 5845 3.125146 GCACATAAACTCTTGTCGCATCA 59.875 43.478 0.00 0.00 0.00 3.07
4904 5857 2.115595 GTCGCATCACTCAGATTCTCG 58.884 52.381 0.00 0.00 33.72 4.04
4918 5871 3.450457 AGATTCTCGACTCATCTGGCTTT 59.550 43.478 0.00 0.00 0.00 3.51
5023 5976 1.971357 ACGAGGACTTCATGAAGGTGT 59.029 47.619 33.11 21.62 42.53 4.16
5030 5983 1.808945 CTTCATGAAGGTGTGCTGTCC 59.191 52.381 25.14 0.00 34.87 4.02
5043 5996 2.157085 GTGCTGTCCTACACGCTTAAAC 59.843 50.000 0.00 0.00 0.00 2.01
5046 5999 1.693062 TGTCCTACACGCTTAAACCCA 59.307 47.619 0.00 0.00 0.00 4.51
5177 6140 1.519408 TTGGCAAAGACTAAGGCGTC 58.481 50.000 0.00 0.00 0.00 5.19
5191 6154 2.730672 GCGTCGTGGTCACTGATGC 61.731 63.158 17.17 17.17 38.54 3.91
5240 6203 0.741221 CCCTTCTCTGTAAGCGTGCC 60.741 60.000 0.00 0.00 0.00 5.01
5381 6344 2.661866 GCTCGTGCGTTCACACCT 60.662 61.111 0.00 0.00 43.28 4.00
5384 6347 0.042188 CTCGTGCGTTCACACCTTTG 60.042 55.000 0.00 0.00 43.28 2.77
5387 6350 1.328069 CGTGCGTTCACACCTTTGTTA 59.672 47.619 0.00 0.00 43.28 2.41
5388 6351 2.598907 CGTGCGTTCACACCTTTGTTAG 60.599 50.000 0.00 0.00 43.28 2.34
5389 6352 2.353579 GTGCGTTCACACCTTTGTTAGT 59.646 45.455 0.00 0.00 42.66 2.24
5423 6424 4.096382 GGCTGTACCATTCCATGTACTTTG 59.904 45.833 0.00 0.00 38.86 2.77
5566 6567 7.544566 GTCATTTGTCAATCAATCTCTTTGCAT 59.455 33.333 0.00 0.00 35.84 3.96
5576 6577 5.359009 TCAATCTCTTTGCATCCAGGAATTC 59.641 40.000 0.00 0.00 35.16 2.17
5874 6924 4.639726 CCATCGAGGTGGGGGATA 57.360 61.111 0.00 0.00 35.55 2.59
6008 7062 4.085009 AGATGCTGACTGATATCGATGGA 58.915 43.478 8.54 0.00 0.00 3.41
6045 7099 1.976112 GGCTAGATCTTAGGCCCCG 59.024 63.158 17.79 0.00 38.77 5.73
6051 7105 3.261818 AGATCTTAGGCCCCGTTAGAT 57.738 47.619 0.00 0.30 0.00 1.98
6052 7106 3.588569 AGATCTTAGGCCCCGTTAGATT 58.411 45.455 0.00 0.00 0.00 2.40
6053 7107 3.974642 AGATCTTAGGCCCCGTTAGATTT 59.025 43.478 0.00 0.00 0.00 2.17
6054 7108 4.412528 AGATCTTAGGCCCCGTTAGATTTT 59.587 41.667 0.00 0.00 0.00 1.82
6055 7109 4.579647 TCTTAGGCCCCGTTAGATTTTT 57.420 40.909 0.00 0.00 0.00 1.94
6090 7144 4.431131 CCACGCCCCAGCTCCATT 62.431 66.667 0.00 0.00 36.60 3.16
6091 7145 2.361610 CACGCCCCAGCTCCATTT 60.362 61.111 0.00 0.00 36.60 2.32
6092 7146 2.044946 ACGCCCCAGCTCCATTTC 60.045 61.111 0.00 0.00 36.60 2.17
6093 7147 2.045045 CGCCCCAGCTCCATTTCA 60.045 61.111 0.00 0.00 36.60 2.69
6094 7148 1.454479 CGCCCCAGCTCCATTTCAT 60.454 57.895 0.00 0.00 36.60 2.57
6095 7149 1.039233 CGCCCCAGCTCCATTTCATT 61.039 55.000 0.00 0.00 36.60 2.57
6096 7150 0.749049 GCCCCAGCTCCATTTCATTC 59.251 55.000 0.00 0.00 35.50 2.67
6097 7151 1.961435 GCCCCAGCTCCATTTCATTCA 60.961 52.381 0.00 0.00 35.50 2.57
6098 7152 2.029623 CCCCAGCTCCATTTCATTCAG 58.970 52.381 0.00 0.00 0.00 3.02
6099 7153 2.357465 CCCCAGCTCCATTTCATTCAGA 60.357 50.000 0.00 0.00 0.00 3.27
6100 7154 3.359033 CCCAGCTCCATTTCATTCAGAA 58.641 45.455 0.00 0.00 0.00 3.02
6117 7171 8.084073 TCATTCAGAAATGAAACAAATCAGTCC 58.916 33.333 0.00 0.00 46.41 3.85
6118 7172 6.957920 TCAGAAATGAAACAAATCAGTCCA 57.042 33.333 0.00 0.00 31.76 4.02
6119 7173 6.973843 TCAGAAATGAAACAAATCAGTCCAG 58.026 36.000 0.00 0.00 31.76 3.86
6120 7174 6.772233 TCAGAAATGAAACAAATCAGTCCAGA 59.228 34.615 0.00 0.00 31.76 3.86
6121 7175 7.040892 TCAGAAATGAAACAAATCAGTCCAGAG 60.041 37.037 0.00 0.00 31.76 3.35
6122 7176 7.000472 AGAAATGAAACAAATCAGTCCAGAGA 59.000 34.615 0.00 0.00 31.76 3.10
6123 7177 6.814506 AATGAAACAAATCAGTCCAGAGAG 57.185 37.500 0.00 0.00 31.76 3.20
6124 7178 4.067896 TGAAACAAATCAGTCCAGAGAGC 58.932 43.478 0.00 0.00 0.00 4.09
6125 7179 4.202398 TGAAACAAATCAGTCCAGAGAGCT 60.202 41.667 0.00 0.00 0.00 4.09
6126 7180 5.012046 TGAAACAAATCAGTCCAGAGAGCTA 59.988 40.000 0.00 0.00 0.00 3.32
6127 7181 4.464069 ACAAATCAGTCCAGAGAGCTAC 57.536 45.455 0.00 0.00 0.00 3.58
6128 7182 3.834813 ACAAATCAGTCCAGAGAGCTACA 59.165 43.478 0.00 0.00 0.00 2.74
6129 7183 4.469227 ACAAATCAGTCCAGAGAGCTACAT 59.531 41.667 0.00 0.00 0.00 2.29
6130 7184 5.658634 ACAAATCAGTCCAGAGAGCTACATA 59.341 40.000 0.00 0.00 0.00 2.29
6131 7185 6.183360 ACAAATCAGTCCAGAGAGCTACATAG 60.183 42.308 0.00 0.00 0.00 2.23
6132 7186 3.826524 TCAGTCCAGAGAGCTACATAGG 58.173 50.000 0.00 0.00 0.00 2.57
6133 7187 3.459969 TCAGTCCAGAGAGCTACATAGGA 59.540 47.826 0.00 0.00 0.00 2.94
6134 7188 4.105537 TCAGTCCAGAGAGCTACATAGGAT 59.894 45.833 0.00 0.00 0.00 3.24
6135 7189 5.310857 TCAGTCCAGAGAGCTACATAGGATA 59.689 44.000 0.00 0.00 0.00 2.59
6136 7190 6.007076 CAGTCCAGAGAGCTACATAGGATAA 58.993 44.000 0.00 0.00 0.00 1.75
6137 7191 6.007703 AGTCCAGAGAGCTACATAGGATAAC 58.992 44.000 0.00 0.00 0.00 1.89
6138 7192 5.004448 TCCAGAGAGCTACATAGGATAACG 58.996 45.833 0.00 0.00 0.00 3.18
6139 7193 4.380023 CCAGAGAGCTACATAGGATAACGC 60.380 50.000 0.00 0.00 0.00 4.84
6140 7194 3.437395 AGAGAGCTACATAGGATAACGCG 59.563 47.826 3.53 3.53 0.00 6.01
6141 7195 2.488545 AGAGCTACATAGGATAACGCGG 59.511 50.000 12.47 0.00 0.00 6.46
6142 7196 2.486982 GAGCTACATAGGATAACGCGGA 59.513 50.000 12.47 0.00 0.00 5.54
6143 7197 2.488545 AGCTACATAGGATAACGCGGAG 59.511 50.000 12.47 0.00 0.00 4.63
6144 7198 2.415625 GCTACATAGGATAACGCGGAGG 60.416 54.545 12.47 0.00 0.00 4.30
6145 7199 1.991121 ACATAGGATAACGCGGAGGA 58.009 50.000 12.47 0.00 0.00 3.71
6146 7200 2.313317 ACATAGGATAACGCGGAGGAA 58.687 47.619 12.47 0.00 0.00 3.36
6147 7201 2.035576 ACATAGGATAACGCGGAGGAAC 59.964 50.000 12.47 0.00 0.00 3.62
6148 7202 0.664761 TAGGATAACGCGGAGGAACG 59.335 55.000 12.47 0.00 0.00 3.95
6149 7203 1.590792 GGATAACGCGGAGGAACGG 60.591 63.158 12.47 0.00 0.00 4.44
6150 7204 2.202837 ATAACGCGGAGGAACGGC 60.203 61.111 12.47 0.00 40.64 5.68
6151 7205 2.894240 GATAACGCGGAGGAACGGCA 62.894 60.000 12.47 0.00 43.51 5.69
6152 7206 2.901051 ATAACGCGGAGGAACGGCAG 62.901 60.000 12.47 0.00 43.51 4.85
6155 7209 4.373116 GCGGAGGAACGGCAGTCA 62.373 66.667 0.00 0.00 42.97 3.41
6156 7210 2.579201 CGGAGGAACGGCAGTCAT 59.421 61.111 0.00 0.00 0.00 3.06
6157 7211 1.813859 CGGAGGAACGGCAGTCATA 59.186 57.895 0.00 0.00 0.00 2.15
6158 7212 0.527817 CGGAGGAACGGCAGTCATAC 60.528 60.000 0.00 0.00 0.00 2.39
6159 7213 0.179081 GGAGGAACGGCAGTCATACC 60.179 60.000 0.00 0.00 0.00 2.73
6164 7218 2.279517 CGGCAGTCATACCGCCTC 60.280 66.667 3.03 0.00 43.44 4.70
6165 7219 2.279517 GGCAGTCATACCGCCTCG 60.280 66.667 0.00 0.00 42.78 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.681692 GTTAACAAAAGTTATACCGTTGGATTT 57.318 29.630 0.00 0.00 0.00 2.17
76 77 6.642707 TGTCCCTTTTGTAATTTGTACCAG 57.357 37.500 0.00 0.00 0.00 4.00
84 85 8.154203 CCTGGTTTATTTGTCCCTTTTGTAATT 58.846 33.333 0.00 0.00 0.00 1.40
176 178 3.264450 AGGTGTCCCTTCTCAGGTTATTG 59.736 47.826 0.00 0.00 38.13 1.90
189 191 4.600111 TGGTTGTAGAAATAAGGTGTCCCT 59.400 41.667 0.00 0.00 45.63 4.20
251 253 7.672240 TGCGTTTTGTATATACTATCCATCCA 58.328 34.615 13.89 0.40 0.00 3.41
256 258 7.871463 AGGACTTGCGTTTTGTATATACTATCC 59.129 37.037 13.89 7.58 0.00 2.59
273 275 6.541111 ACTTTTTCTAGTTTAGGACTTGCG 57.459 37.500 0.00 0.00 39.86 4.85
416 420 9.109533 GCAAAATCATGCTTTTTGAAACAATAG 57.890 29.630 25.37 7.19 43.50 1.73
424 428 7.095144 CCAGTATTGCAAAATCATGCTTTTTGA 60.095 33.333 25.37 13.52 46.54 2.69
434 439 7.118723 AGTTAGGATCCAGTATTGCAAAATCA 58.881 34.615 15.82 0.00 0.00 2.57
462 467 3.593442 AAAGTGTGGGGAGTGATGAAA 57.407 42.857 0.00 0.00 0.00 2.69
507 513 2.285368 ATGCCCCCTCTCCGTGAA 60.285 61.111 0.00 0.00 0.00 3.18
548 555 6.108097 GAAAGTATAAAGCTGGACTTTCGG 57.892 41.667 19.08 0.00 45.78 4.30
649 656 8.161425 ACGTATTAGCCATGGGTTTATAGAAAT 58.839 33.333 23.79 15.47 0.00 2.17
776 784 9.248291 GGCATAGTCCAATTTATTTTACACATG 57.752 33.333 0.00 0.00 0.00 3.21
806 814 6.730507 ACTTTCTCCCACCCAAAATAATTGAT 59.269 34.615 0.00 0.00 0.00 2.57
822 830 6.238402 GGAATTTCGCAATAGTACTTTCTCCC 60.238 42.308 0.00 0.00 0.00 4.30
827 835 5.944007 AGGTGGAATTTCGCAATAGTACTTT 59.056 36.000 0.00 0.00 0.00 2.66
882 890 5.121142 CGGAATAGCTTTCTTGTAACCGAAA 59.879 40.000 0.00 0.00 39.11 3.46
941 949 3.120165 GCAAGAAGGGAATGAGTTCGAAC 60.120 47.826 20.71 20.71 35.10 3.95
942 950 3.074412 GCAAGAAGGGAATGAGTTCGAA 58.926 45.455 0.00 0.00 35.10 3.71
943 951 2.699954 GCAAGAAGGGAATGAGTTCGA 58.300 47.619 0.00 0.00 35.10 3.71
944 952 1.394917 CGCAAGAAGGGAATGAGTTCG 59.605 52.381 0.00 0.00 43.02 3.95
1066 1076 2.996395 CTCCCTGCAGGTGAGCAT 59.004 61.111 30.63 0.00 44.68 3.79
1073 1083 1.227497 GATTCGAGCTCCCTGCAGG 60.227 63.158 26.87 26.87 45.94 4.85
1231 1241 1.839424 AACCAGCAGATTTAGTGCCC 58.161 50.000 0.00 0.00 42.24 5.36
1235 1245 3.074412 CGTCCAAACCAGCAGATTTAGT 58.926 45.455 0.00 0.00 0.00 2.24
1280 2127 2.721231 GCACTCGCTGGCAAAACA 59.279 55.556 0.00 0.00 34.30 2.83
1359 2206 2.438868 AATCAGGGAAGCGCAAAAAC 57.561 45.000 11.47 0.00 0.00 2.43
1440 2287 8.059461 TGTGTCCTAGACAGATCCTATTTCTAA 58.941 37.037 0.00 0.00 43.57 2.10
1441 2288 7.583625 TGTGTCCTAGACAGATCCTATTTCTA 58.416 38.462 0.00 0.00 43.57 2.10
1442 2289 6.436027 TGTGTCCTAGACAGATCCTATTTCT 58.564 40.000 0.00 0.00 43.57 2.52
1443 2290 6.716934 TGTGTCCTAGACAGATCCTATTTC 57.283 41.667 0.00 0.00 43.57 2.17
1464 2311 7.175347 ACACAACTATGTCACATCTAGATGT 57.825 36.000 28.95 28.95 44.73 3.06
1465 2312 7.691430 GACACAACTATGTCACATCTAGATG 57.309 40.000 27.63 27.63 46.89 2.90
1477 2324 6.042638 AGCTTAGATGTGACACAACTATGT 57.957 37.500 25.95 16.64 41.61 2.29
1478 2325 8.546244 CATTAGCTTAGATGTGACACAACTATG 58.454 37.037 21.90 22.78 34.22 2.23
1479 2326 8.260818 ACATTAGCTTAGATGTGACACAACTAT 58.739 33.333 21.90 12.54 34.22 2.12
1480 2327 7.611770 ACATTAGCTTAGATGTGACACAACTA 58.388 34.615 18.60 18.60 35.31 2.24
1481 2328 6.467677 ACATTAGCTTAGATGTGACACAACT 58.532 36.000 20.49 20.49 35.31 3.16
1482 2329 6.727824 ACATTAGCTTAGATGTGACACAAC 57.272 37.500 13.23 10.27 35.31 3.32
1483 2330 6.934083 TGAACATTAGCTTAGATGTGACACAA 59.066 34.615 13.23 0.00 36.65 3.33
1484 2331 6.368791 GTGAACATTAGCTTAGATGTGACACA 59.631 38.462 23.33 11.41 40.23 3.72
1485 2332 6.591834 AGTGAACATTAGCTTAGATGTGACAC 59.408 38.462 22.25 22.25 40.48 3.67
1486 2333 6.701340 AGTGAACATTAGCTTAGATGTGACA 58.299 36.000 9.83 10.22 36.65 3.58
1487 2334 7.009999 CAGAGTGAACATTAGCTTAGATGTGAC 59.990 40.741 9.83 9.69 36.65 3.67
1488 2335 7.038048 CAGAGTGAACATTAGCTTAGATGTGA 58.962 38.462 9.83 0.42 36.65 3.58
1489 2336 6.815641 ACAGAGTGAACATTAGCTTAGATGTG 59.184 38.462 9.83 1.29 36.65 3.21
1490 2337 6.940739 ACAGAGTGAACATTAGCTTAGATGT 58.059 36.000 0.00 0.00 38.08 3.06
1491 2338 7.222417 CAGACAGAGTGAACATTAGCTTAGATG 59.778 40.741 0.00 0.00 0.00 2.90
1492 2339 7.093552 ACAGACAGAGTGAACATTAGCTTAGAT 60.094 37.037 0.00 0.00 0.00 1.98
1493 2340 6.209589 ACAGACAGAGTGAACATTAGCTTAGA 59.790 38.462 0.00 0.00 0.00 2.10
1494 2341 6.309980 CACAGACAGAGTGAACATTAGCTTAG 59.690 42.308 0.00 0.00 39.30 2.18
1495 2342 6.159293 CACAGACAGAGTGAACATTAGCTTA 58.841 40.000 0.00 0.00 39.30 3.09
1496 2343 4.993584 CACAGACAGAGTGAACATTAGCTT 59.006 41.667 0.00 0.00 39.30 3.74
1497 2344 4.562347 CCACAGACAGAGTGAACATTAGCT 60.562 45.833 0.00 0.00 39.30 3.32
1498 2345 3.681897 CCACAGACAGAGTGAACATTAGC 59.318 47.826 0.00 0.00 39.30 3.09
1499 2346 4.887748 ACCACAGACAGAGTGAACATTAG 58.112 43.478 0.00 0.00 39.30 1.73
1500 2347 4.343814 TGACCACAGACAGAGTGAACATTA 59.656 41.667 0.00 0.00 39.30 1.90
1501 2348 3.134623 TGACCACAGACAGAGTGAACATT 59.865 43.478 0.00 0.00 39.30 2.71
1502 2349 2.700371 TGACCACAGACAGAGTGAACAT 59.300 45.455 0.00 0.00 39.30 2.71
1503 2350 2.107366 TGACCACAGACAGAGTGAACA 58.893 47.619 0.00 0.00 39.30 3.18
1504 2351 2.890808 TGACCACAGACAGAGTGAAC 57.109 50.000 0.00 0.00 39.30 3.18
1505 2352 4.422073 AATTGACCACAGACAGAGTGAA 57.578 40.909 0.00 0.00 39.30 3.18
1506 2353 4.422073 AAATTGACCACAGACAGAGTGA 57.578 40.909 0.00 0.00 39.30 3.41
1507 2354 5.505173 AAAAATTGACCACAGACAGAGTG 57.495 39.130 0.00 0.00 36.76 3.51
1536 2383 5.876612 AATGCAGCAACAAGAAACAAAAA 57.123 30.435 0.00 0.00 0.00 1.94
1537 2384 8.830201 ATATAATGCAGCAACAAGAAACAAAA 57.170 26.923 0.00 0.00 0.00 2.44
1538 2385 9.352784 GTATATAATGCAGCAACAAGAAACAAA 57.647 29.630 0.00 0.00 0.00 2.83
1539 2386 8.739039 AGTATATAATGCAGCAACAAGAAACAA 58.261 29.630 0.00 0.00 0.00 2.83
1540 2387 8.279970 AGTATATAATGCAGCAACAAGAAACA 57.720 30.769 0.00 0.00 0.00 2.83
1541 2388 9.013490 CAAGTATATAATGCAGCAACAAGAAAC 57.987 33.333 0.00 0.00 0.00 2.78
1542 2389 8.739039 ACAAGTATATAATGCAGCAACAAGAAA 58.261 29.630 0.00 0.00 0.00 2.52
1543 2390 8.183536 CACAAGTATATAATGCAGCAACAAGAA 58.816 33.333 0.00 0.00 0.00 2.52
1544 2391 7.201723 CCACAAGTATATAATGCAGCAACAAGA 60.202 37.037 0.00 0.00 0.00 3.02
1545 2392 6.914215 CCACAAGTATATAATGCAGCAACAAG 59.086 38.462 0.00 0.00 0.00 3.16
1546 2393 6.183360 CCCACAAGTATATAATGCAGCAACAA 60.183 38.462 0.00 0.00 0.00 2.83
1547 2394 5.299028 CCCACAAGTATATAATGCAGCAACA 59.701 40.000 0.00 0.00 0.00 3.33
1548 2395 5.530915 TCCCACAAGTATATAATGCAGCAAC 59.469 40.000 0.00 0.00 0.00 4.17
1549 2396 5.689835 TCCCACAAGTATATAATGCAGCAA 58.310 37.500 0.00 0.00 0.00 3.91
1550 2397 5.303259 TCCCACAAGTATATAATGCAGCA 57.697 39.130 0.00 0.00 0.00 4.41
1551 2398 4.154918 GCTCCCACAAGTATATAATGCAGC 59.845 45.833 0.00 0.00 0.00 5.25
1552 2399 5.555017 AGCTCCCACAAGTATATAATGCAG 58.445 41.667 0.00 0.00 0.00 4.41
1553 2400 5.567037 AGCTCCCACAAGTATATAATGCA 57.433 39.130 0.00 0.00 0.00 3.96
1554 2401 7.386851 TCTAAGCTCCCACAAGTATATAATGC 58.613 38.462 0.00 0.00 0.00 3.56
1555 2402 9.376075 CATCTAAGCTCCCACAAGTATATAATG 57.624 37.037 0.00 0.00 0.00 1.90
1556 2403 9.105844 ACATCTAAGCTCCCACAAGTATATAAT 57.894 33.333 0.00 0.00 0.00 1.28
1557 2404 8.367911 CACATCTAAGCTCCCACAAGTATATAA 58.632 37.037 0.00 0.00 0.00 0.98
1558 2405 7.728532 TCACATCTAAGCTCCCACAAGTATATA 59.271 37.037 0.00 0.00 0.00 0.86
1559 2406 6.554982 TCACATCTAAGCTCCCACAAGTATAT 59.445 38.462 0.00 0.00 0.00 0.86
1560 2407 5.897250 TCACATCTAAGCTCCCACAAGTATA 59.103 40.000 0.00 0.00 0.00 1.47
1561 2408 4.716784 TCACATCTAAGCTCCCACAAGTAT 59.283 41.667 0.00 0.00 0.00 2.12
1562 2409 4.081642 GTCACATCTAAGCTCCCACAAGTA 60.082 45.833 0.00 0.00 0.00 2.24
1563 2410 2.906389 TCACATCTAAGCTCCCACAAGT 59.094 45.455 0.00 0.00 0.00 3.16
1564 2411 3.265791 GTCACATCTAAGCTCCCACAAG 58.734 50.000 0.00 0.00 0.00 3.16
1565 2412 2.637382 TGTCACATCTAAGCTCCCACAA 59.363 45.455 0.00 0.00 0.00 3.33
1566 2413 2.256306 TGTCACATCTAAGCTCCCACA 58.744 47.619 0.00 0.00 0.00 4.17
1567 2414 3.462021 GATGTCACATCTAAGCTCCCAC 58.538 50.000 10.81 0.00 0.00 4.61
1568 2415 2.435805 GGATGTCACATCTAAGCTCCCA 59.564 50.000 17.46 0.00 0.00 4.37
1569 2416 2.703007 AGGATGTCACATCTAAGCTCCC 59.297 50.000 17.46 0.00 0.00 4.30
1570 2417 4.414337 AAGGATGTCACATCTAAGCTCC 57.586 45.455 17.46 0.18 0.00 4.70
1571 2418 7.849804 TTTTAAGGATGTCACATCTAAGCTC 57.150 36.000 17.46 0.00 0.00 4.09
1572 2419 7.665559 TGTTTTTAAGGATGTCACATCTAAGCT 59.334 33.333 17.46 3.19 0.00 3.74
1573 2420 7.816640 TGTTTTTAAGGATGTCACATCTAAGC 58.183 34.615 17.46 0.73 0.00 3.09
1574 2421 9.994432 GATGTTTTTAAGGATGTCACATCTAAG 57.006 33.333 17.46 0.00 37.26 2.18
1575 2422 9.739276 AGATGTTTTTAAGGATGTCACATCTAA 57.261 29.630 17.46 6.57 44.74 2.10
1577 2424 9.388506 CTAGATGTTTTTAAGGATGTCACATCT 57.611 33.333 17.46 14.48 46.91 2.90
1578 2425 9.383519 TCTAGATGTTTTTAAGGATGTCACATC 57.616 33.333 9.53 9.53 39.46 3.06
1579 2426 9.911788 ATCTAGATGTTTTTAAGGATGTCACAT 57.088 29.630 3.89 0.00 0.00 3.21
1580 2427 9.166173 CATCTAGATGTTTTTAAGGATGTCACA 57.834 33.333 22.42 0.00 34.23 3.58
1597 2444 9.376075 ACAGTTTGTCTAATTCACATCTAGATG 57.624 33.333 27.63 27.63 44.15 2.90
1598 2445 9.950496 AACAGTTTGTCTAATTCACATCTAGAT 57.050 29.630 0.00 0.00 0.00 1.98
1602 2449 9.778741 TTCTAACAGTTTGTCTAATTCACATCT 57.221 29.630 0.00 0.00 0.00 2.90
1620 2467 9.557061 GGGGGTATAAAGACTTATTTCTAACAG 57.443 37.037 0.00 0.00 0.00 3.16
1621 2468 9.060137 TGGGGGTATAAAGACTTATTTCTAACA 57.940 33.333 0.00 0.00 0.00 2.41
1622 2469 9.910267 TTGGGGGTATAAAGACTTATTTCTAAC 57.090 33.333 0.00 0.00 0.00 2.34
1684 2532 2.078392 CCACCTAAATAACAACGCGGT 58.922 47.619 12.47 0.00 0.00 5.68
1704 2552 9.815936 CAAAATAGAAATTTGAACCAGAATTGC 57.184 29.630 0.00 0.00 39.56 3.56
1720 2568 9.793259 AAATCTGTAGAGTCCACAAAATAGAAA 57.207 29.630 0.00 0.00 0.00 2.52
1803 2665 1.620323 GGCTTGGAAAAGTGATTGCCT 59.380 47.619 0.00 0.00 37.65 4.75
1805 2667 3.391506 AAGGCTTGGAAAAGTGATTGC 57.608 42.857 0.00 0.00 0.00 3.56
1940 2804 2.294074 GGAAGTACACACCACTTTGCA 58.706 47.619 0.00 0.00 36.38 4.08
1971 2835 9.271828 CCCAGTTAGCTGAAATTTTTGTAAATT 57.728 29.630 8.34 0.00 45.28 1.82
1983 2847 2.603075 ATTGCCCCAGTTAGCTGAAA 57.397 45.000 8.34 0.00 45.28 2.69
1994 2858 2.818921 ACAATTCTGCTAATTGCCCCA 58.181 42.857 18.95 0.00 40.35 4.96
2011 2875 1.202200 CGAGTTCCAACGCCAAAACAA 60.202 47.619 0.00 0.00 0.00 2.83
2020 2884 1.164041 AAACTGCCCGAGTTCCAACG 61.164 55.000 0.00 0.00 44.68 4.10
2041 2905 5.278315 GGGTTGTAAAGTAAGCTGAACTTGG 60.278 44.000 13.80 0.00 39.58 3.61
2079 2943 6.446318 CAACTAAAAACTTTATGGAGCTGCA 58.554 36.000 11.44 11.44 0.00 4.41
2136 3000 1.007734 CAGGTGCACGTGTAGTCGT 60.008 57.895 27.22 0.26 45.10 4.34
2137 3001 0.239082 TACAGGTGCACGTGTAGTCG 59.761 55.000 36.10 16.97 43.64 4.18
2138 3002 2.649331 ATACAGGTGCACGTGTAGTC 57.351 50.000 39.29 16.47 46.20 2.59
2139 3003 4.730949 ATAATACAGGTGCACGTGTAGT 57.269 40.909 39.29 38.69 46.20 2.73
2140 3004 6.500910 TCTTATAATACAGGTGCACGTGTAG 58.499 40.000 39.29 31.12 46.20 2.74
2214 3081 1.145738 AGGTTTTCCCTCACTGCATGT 59.854 47.619 0.00 0.00 40.71 3.21
2250 3117 2.755650 TCTTCAGTCTTTGCGAAGTCC 58.244 47.619 13.49 5.90 37.87 3.85
2253 3120 3.993081 AGTCATCTTCAGTCTTTGCGAAG 59.007 43.478 7.44 7.44 37.98 3.79
2386 3297 6.880484 AGTGTCCGTCCAAAATATATGTACA 58.120 36.000 0.00 0.00 0.00 2.90
2401 3312 0.534203 TTTCAGGGCAAGTGTCCGTC 60.534 55.000 0.00 0.00 46.49 4.79
2439 3350 9.431887 GTAAGTGTACAAATCCTCATACAAGAA 57.568 33.333 0.00 0.00 29.71 2.52
2476 3387 8.862325 ACATGTAACTGAACCATGATTTCTTA 57.138 30.769 0.00 0.00 38.56 2.10
2512 3423 9.734620 TTAGTTGCACAAGATCATATATTTTGC 57.265 29.630 0.00 0.00 37.59 3.68
2587 3498 3.724508 ACACATGCCAAAATTCGTGAA 57.275 38.095 0.00 0.00 0.00 3.18
2686 3597 8.375493 TGAAGTTCATGGTACTTAGTATTCCT 57.625 34.615 0.08 0.00 36.04 3.36
2690 3601 8.822805 TCCTTTGAAGTTCATGGTACTTAGTAT 58.177 33.333 18.89 0.00 36.04 2.12
2695 3606 6.777580 ACATTCCTTTGAAGTTCATGGTACTT 59.222 34.615 18.89 12.16 38.49 2.24
2697 3608 6.575162 ACATTCCTTTGAAGTTCATGGTAC 57.425 37.500 18.89 0.00 33.05 3.34
2699 3610 6.484364 AAACATTCCTTTGAAGTTCATGGT 57.516 33.333 18.89 6.09 33.05 3.55
2700 3611 7.280652 ACAAAAACATTCCTTTGAAGTTCATGG 59.719 33.333 6.36 12.05 36.30 3.66
2701 3612 8.200364 ACAAAAACATTCCTTTGAAGTTCATG 57.800 30.769 6.36 3.40 36.30 3.07
2826 3737 3.188254 CGTGGCAGTTTCATGTGAATACA 59.812 43.478 0.00 0.00 41.89 2.29
2903 3814 8.172352 TGCTAGCCTTAACAATAACTTCAAAA 57.828 30.769 13.29 0.00 0.00 2.44
2904 3815 7.447238 ACTGCTAGCCTTAACAATAACTTCAAA 59.553 33.333 13.29 0.00 0.00 2.69
3067 3978 5.300752 CAACAGAAGGAGTAAGAAGCTGAA 58.699 41.667 0.00 0.00 0.00 3.02
3085 3996 9.638239 AACAATTACTAAATAATGCACCAACAG 57.362 29.630 0.00 0.00 33.53 3.16
3142 4053 2.436646 ACATCGCCGGAAGCCAAG 60.437 61.111 5.05 0.00 38.78 3.61
3294 4205 1.401905 GGGTTCATTAAAGGCAGCTCG 59.598 52.381 0.00 0.00 0.00 5.03
3366 4277 9.103861 GGAAAGTGGATCATAAACAAACAAAAA 57.896 29.630 0.00 0.00 0.00 1.94
3371 4282 8.739972 ACATAGGAAAGTGGATCATAAACAAAC 58.260 33.333 0.00 0.00 0.00 2.93
3403 4315 8.099364 CACAACATGTGTATCTTTACCTCTTT 57.901 34.615 0.00 0.00 43.08 2.52
3431 4343 3.437049 GCAAGAATACACTGACTCCCAAC 59.563 47.826 0.00 0.00 0.00 3.77
3448 4360 4.340950 CACCCTGAAAAAGGTAAAGCAAGA 59.659 41.667 0.00 0.00 45.78 3.02
3464 4376 3.031736 GCCATAGAGTAGAACACCCTGA 58.968 50.000 0.00 0.00 0.00 3.86
3740 4667 8.451748 GGAATTAAGTTTAAGACCAACTAGCTG 58.548 37.037 0.00 0.00 33.12 4.24
3774 4704 2.979814 TGCCACTATGCGTGTCTTAT 57.020 45.000 0.00 0.00 42.20 1.73
3876 4810 3.368427 CGATAGTGTGTGGACAGGAACAT 60.368 47.826 0.00 0.00 30.74 2.71
3877 4811 2.029380 CGATAGTGTGTGGACAGGAACA 60.029 50.000 0.00 0.00 30.74 3.18
3912 4846 8.788806 CGTCATATATTTAGGAACAGAGAGAGT 58.211 37.037 0.00 0.00 0.00 3.24
3913 4847 8.788806 ACGTCATATATTTAGGAACAGAGAGAG 58.211 37.037 0.00 0.00 0.00 3.20
3914 4848 8.693120 ACGTCATATATTTAGGAACAGAGAGA 57.307 34.615 0.00 0.00 0.00 3.10
3915 4849 9.751542 AAACGTCATATATTTAGGAACAGAGAG 57.248 33.333 0.00 0.00 0.00 3.20
3918 4852 9.104965 CCAAAACGTCATATATTTAGGAACAGA 57.895 33.333 0.00 0.00 0.00 3.41
3919 4853 8.889717 ACCAAAACGTCATATATTTAGGAACAG 58.110 33.333 0.00 0.00 0.00 3.16
3920 4854 8.795842 ACCAAAACGTCATATATTTAGGAACA 57.204 30.769 0.00 0.00 0.00 3.18
3930 4864 8.597227 CGATTTGAACTACCAAAACGTCATATA 58.403 33.333 9.71 0.00 42.96 0.86
3931 4865 7.461107 CGATTTGAACTACCAAAACGTCATAT 58.539 34.615 9.71 0.00 42.96 1.78
3932 4866 6.823531 CGATTTGAACTACCAAAACGTCATA 58.176 36.000 9.71 0.00 42.96 2.15
3933 4867 5.685841 CGATTTGAACTACCAAAACGTCAT 58.314 37.500 9.71 0.00 42.96 3.06
3934 4868 5.085636 CGATTTGAACTACCAAAACGTCA 57.914 39.130 9.71 0.00 42.96 4.35
3950 4884 8.346476 TCAAATTGAACTACCAAAACGATTTG 57.654 30.769 10.91 10.91 44.50 2.32
3951 4885 8.934507 TTCAAATTGAACTACCAAAACGATTT 57.065 26.923 4.03 0.00 30.26 2.17
3966 4900 6.853720 TGACGTTTTGGTAGTTCAAATTGAA 58.146 32.000 4.03 4.03 36.63 2.69
3967 4901 6.438259 TGACGTTTTGGTAGTTCAAATTGA 57.562 33.333 0.00 0.00 36.63 2.57
3968 4902 8.964420 ATATGACGTTTTGGTAGTTCAAATTG 57.036 30.769 0.00 0.00 36.63 2.32
3985 4919 6.781014 TCCCTCTGTTCCTAAATATATGACGT 59.219 38.462 0.00 0.00 0.00 4.34
4334 5269 6.830838 AGAGGGGAAAAACACTTGATGATATC 59.169 38.462 0.00 0.00 0.00 1.63
4355 5290 9.823647 CATATATGGCATAAAGTTACCTAGAGG 57.176 37.037 11.86 0.00 42.17 3.69
4558 5508 5.245301 TCGATGTTAGAGAAGGGAGTCAAAA 59.755 40.000 0.00 0.00 0.00 2.44
4580 5530 5.355350 ACCAGGAAGAAAAGAATTATGCTCG 59.645 40.000 0.00 0.00 0.00 5.03
4582 5532 5.105595 GCACCAGGAAGAAAAGAATTATGCT 60.106 40.000 0.00 0.00 0.00 3.79
4600 5550 4.148128 AGAAGAATCCATACAGCACCAG 57.852 45.455 0.00 0.00 0.00 4.00
4604 5554 5.164620 TGTCAAGAAGAATCCATACAGCA 57.835 39.130 0.00 0.00 0.00 4.41
4675 5625 1.457346 CAGGGTCAAGAACATCAGGC 58.543 55.000 0.00 0.00 0.00 4.85
4681 5631 1.301716 GAGCGCAGGGTCAAGAACA 60.302 57.895 11.47 0.00 40.40 3.18
4711 5661 3.502595 TCTCAATCTTTCTGTCGAGACGT 59.497 43.478 0.00 0.00 0.00 4.34
4735 5685 1.000506 GACTGCTCGTTTGGTAGTGGA 59.999 52.381 0.00 0.00 30.31 4.02
4738 5688 2.364324 TCTTGACTGCTCGTTTGGTAGT 59.636 45.455 0.00 0.00 32.67 2.73
4825 5775 2.171448 ACTCACTTCAGCCAGTTTCACT 59.829 45.455 0.00 0.00 0.00 3.41
4856 5806 7.705325 AGAGTTTATGTGCGATAAGAACGTTAT 59.295 33.333 0.00 0.00 0.00 1.89
4879 5832 2.643933 TCTGAGTGATGCGACAAGAG 57.356 50.000 0.00 0.00 0.00 2.85
4891 5844 4.497842 CCAGATGAGTCGAGAATCTGAGTG 60.498 50.000 23.70 10.66 46.74 3.51
4892 5845 3.631686 CCAGATGAGTCGAGAATCTGAGT 59.368 47.826 23.70 0.00 46.74 3.41
4904 5857 4.141620 TGAATCCCTAAAGCCAGATGAGTC 60.142 45.833 0.00 0.00 0.00 3.36
4918 5871 0.619255 TCAGCCCCGTTGAATCCCTA 60.619 55.000 0.00 0.00 0.00 3.53
5023 5976 2.409975 GTTTAAGCGTGTAGGACAGCA 58.590 47.619 0.00 0.00 0.00 4.41
5030 5983 2.289195 TGGTCTGGGTTTAAGCGTGTAG 60.289 50.000 0.00 0.00 0.00 2.74
5043 5996 0.911769 TAAGGTGCAGATGGTCTGGG 59.088 55.000 8.85 0.00 44.43 4.45
5046 5999 3.679389 CTTGTTAAGGTGCAGATGGTCT 58.321 45.455 0.00 0.00 0.00 3.85
5177 6140 1.328680 GCTATTGCATCAGTGACCACG 59.671 52.381 0.00 0.00 39.41 4.94
5381 6344 4.339814 CAGCCCAAACCAAGTACTAACAAA 59.660 41.667 0.00 0.00 0.00 2.83
5384 6347 3.483421 ACAGCCCAAACCAAGTACTAAC 58.517 45.455 0.00 0.00 0.00 2.34
5387 6350 2.224695 GGTACAGCCCAAACCAAGTACT 60.225 50.000 0.00 0.00 34.02 2.73
5388 6351 2.156917 GGTACAGCCCAAACCAAGTAC 58.843 52.381 0.00 0.00 33.28 2.73
5389 6352 1.775459 TGGTACAGCCCAAACCAAGTA 59.225 47.619 0.00 0.00 40.28 2.24
5423 6424 3.308530 CTTTTTCCGAAGCACATTGTCC 58.691 45.455 0.00 0.00 0.00 4.02
5566 6567 4.365368 TGGATCTCTTCAGAATTCCTGGA 58.635 43.478 0.65 0.00 43.12 3.86
5602 6603 7.576861 TCCCACTTTTAAAGGAAAACTGTAG 57.423 36.000 9.64 0.00 33.39 2.74
5603 6604 7.780745 TGATCCCACTTTTAAAGGAAAACTGTA 59.219 33.333 9.64 0.00 33.39 2.74
5604 6605 6.609616 TGATCCCACTTTTAAAGGAAAACTGT 59.390 34.615 9.64 0.00 33.39 3.55
5605 6606 7.049799 TGATCCCACTTTTAAAGGAAAACTG 57.950 36.000 9.64 0.00 33.39 3.16
5701 6716 2.215942 AGGGGCATGTTTGGAGTAAC 57.784 50.000 0.00 0.00 0.00 2.50
5872 6922 2.237893 CGGTCAACCCCAAACTAGGTAT 59.762 50.000 0.00 0.00 34.45 2.73
5874 6924 0.399075 CGGTCAACCCCAAACTAGGT 59.601 55.000 0.00 0.00 38.27 3.08
5998 7048 2.509569 AGCTCGACACTCCATCGATAT 58.490 47.619 0.00 0.00 46.76 1.63
6005 7059 0.033504 GACCAAAGCTCGACACTCCA 59.966 55.000 0.00 0.00 0.00 3.86
6008 7062 0.034059 CCTGACCAAAGCTCGACACT 59.966 55.000 0.00 0.00 0.00 3.55
6054 7108 3.639561 GTGGTGCCCTTTTCCTCTAAAAA 59.360 43.478 0.00 0.00 36.64 1.94
6055 7109 3.227614 GTGGTGCCCTTTTCCTCTAAAA 58.772 45.455 0.00 0.00 35.74 1.52
6056 7110 2.812613 CGTGGTGCCCTTTTCCTCTAAA 60.813 50.000 0.00 0.00 0.00 1.85
6057 7111 1.271163 CGTGGTGCCCTTTTCCTCTAA 60.271 52.381 0.00 0.00 0.00 2.10
6058 7112 0.323629 CGTGGTGCCCTTTTCCTCTA 59.676 55.000 0.00 0.00 0.00 2.43
6059 7113 1.073199 CGTGGTGCCCTTTTCCTCT 59.927 57.895 0.00 0.00 0.00 3.69
6060 7114 2.626780 GCGTGGTGCCCTTTTCCTC 61.627 63.158 0.00 0.00 37.76 3.71
6061 7115 2.597510 GCGTGGTGCCCTTTTCCT 60.598 61.111 0.00 0.00 37.76 3.36
6073 7127 3.944250 AAATGGAGCTGGGGCGTGG 62.944 63.158 0.00 0.00 44.37 4.94
6074 7128 2.361610 AAATGGAGCTGGGGCGTG 60.362 61.111 0.00 0.00 44.37 5.34
6075 7129 2.044946 GAAATGGAGCTGGGGCGT 60.045 61.111 0.00 0.00 44.37 5.68
6076 7130 1.039233 AATGAAATGGAGCTGGGGCG 61.039 55.000 0.00 0.00 44.37 6.13
6077 7131 0.749049 GAATGAAATGGAGCTGGGGC 59.251 55.000 0.00 0.00 39.06 5.80
6078 7132 2.029623 CTGAATGAAATGGAGCTGGGG 58.970 52.381 0.00 0.00 0.00 4.96
6079 7133 3.008835 TCTGAATGAAATGGAGCTGGG 57.991 47.619 0.00 0.00 0.00 4.45
6092 7146 7.868922 TGGACTGATTTGTTTCATTTCTGAATG 59.131 33.333 0.00 0.00 40.95 2.67
6093 7147 7.954835 TGGACTGATTTGTTTCATTTCTGAAT 58.045 30.769 0.00 0.00 40.95 2.57
6094 7148 7.285172 TCTGGACTGATTTGTTTCATTTCTGAA 59.715 33.333 0.00 0.00 39.62 3.02
6095 7149 6.772233 TCTGGACTGATTTGTTTCATTTCTGA 59.228 34.615 0.00 0.00 0.00 3.27
6096 7150 6.973843 TCTGGACTGATTTGTTTCATTTCTG 58.026 36.000 0.00 0.00 0.00 3.02
6097 7151 7.000472 TCTCTGGACTGATTTGTTTCATTTCT 59.000 34.615 0.00 0.00 0.00 2.52
6098 7152 7.206981 TCTCTGGACTGATTTGTTTCATTTC 57.793 36.000 0.00 0.00 0.00 2.17
6099 7153 6.294397 GCTCTCTGGACTGATTTGTTTCATTT 60.294 38.462 0.00 0.00 0.00 2.32
6100 7154 5.182760 GCTCTCTGGACTGATTTGTTTCATT 59.817 40.000 0.00 0.00 0.00 2.57
6101 7155 4.699257 GCTCTCTGGACTGATTTGTTTCAT 59.301 41.667 0.00 0.00 0.00 2.57
6102 7156 4.067896 GCTCTCTGGACTGATTTGTTTCA 58.932 43.478 0.00 0.00 0.00 2.69
6103 7157 4.322567 AGCTCTCTGGACTGATTTGTTTC 58.677 43.478 0.00 0.00 0.00 2.78
6104 7158 4.363991 AGCTCTCTGGACTGATTTGTTT 57.636 40.909 0.00 0.00 0.00 2.83
6105 7159 4.284490 TGTAGCTCTCTGGACTGATTTGTT 59.716 41.667 0.00 0.00 0.00 2.83
6106 7160 3.834813 TGTAGCTCTCTGGACTGATTTGT 59.165 43.478 0.00 0.00 0.00 2.83
6107 7161 4.462508 TGTAGCTCTCTGGACTGATTTG 57.537 45.455 0.00 0.00 0.00 2.32
6108 7162 5.304101 CCTATGTAGCTCTCTGGACTGATTT 59.696 44.000 0.00 0.00 0.00 2.17
6109 7163 4.832266 CCTATGTAGCTCTCTGGACTGATT 59.168 45.833 0.00 0.00 0.00 2.57
6110 7164 4.105537 TCCTATGTAGCTCTCTGGACTGAT 59.894 45.833 0.00 0.00 0.00 2.90
6111 7165 3.459969 TCCTATGTAGCTCTCTGGACTGA 59.540 47.826 0.00 0.00 0.00 3.41
6112 7166 3.826524 TCCTATGTAGCTCTCTGGACTG 58.173 50.000 0.00 0.00 0.00 3.51
6113 7167 4.740154 ATCCTATGTAGCTCTCTGGACT 57.260 45.455 0.00 0.00 0.00 3.85
6114 7168 5.106475 CGTTATCCTATGTAGCTCTCTGGAC 60.106 48.000 0.00 0.00 0.00 4.02
6115 7169 5.004448 CGTTATCCTATGTAGCTCTCTGGA 58.996 45.833 0.00 0.00 0.00 3.86
6116 7170 4.380023 GCGTTATCCTATGTAGCTCTCTGG 60.380 50.000 0.00 0.00 0.00 3.86
6117 7171 4.670478 CGCGTTATCCTATGTAGCTCTCTG 60.670 50.000 0.00 0.00 0.00 3.35
6118 7172 3.437395 CGCGTTATCCTATGTAGCTCTCT 59.563 47.826 0.00 0.00 0.00 3.10
6119 7173 3.426426 CCGCGTTATCCTATGTAGCTCTC 60.426 52.174 4.92 0.00 0.00 3.20
6120 7174 2.488545 CCGCGTTATCCTATGTAGCTCT 59.511 50.000 4.92 0.00 0.00 4.09
6121 7175 2.486982 TCCGCGTTATCCTATGTAGCTC 59.513 50.000 4.92 0.00 0.00 4.09
6122 7176 2.488545 CTCCGCGTTATCCTATGTAGCT 59.511 50.000 4.92 0.00 0.00 3.32
6123 7177 2.415625 CCTCCGCGTTATCCTATGTAGC 60.416 54.545 4.92 0.00 0.00 3.58
6124 7178 3.079578 TCCTCCGCGTTATCCTATGTAG 58.920 50.000 4.92 0.00 0.00 2.74
6125 7179 3.144657 TCCTCCGCGTTATCCTATGTA 57.855 47.619 4.92 0.00 0.00 2.29
6126 7180 1.991121 TCCTCCGCGTTATCCTATGT 58.009 50.000 4.92 0.00 0.00 2.29
6127 7181 2.673833 GTTCCTCCGCGTTATCCTATG 58.326 52.381 4.92 0.00 0.00 2.23
6128 7182 1.268899 CGTTCCTCCGCGTTATCCTAT 59.731 52.381 4.92 0.00 0.00 2.57
6129 7183 0.664761 CGTTCCTCCGCGTTATCCTA 59.335 55.000 4.92 0.00 0.00 2.94
6130 7184 1.436336 CGTTCCTCCGCGTTATCCT 59.564 57.895 4.92 0.00 0.00 3.24
6131 7185 1.590792 CCGTTCCTCCGCGTTATCC 60.591 63.158 4.92 0.00 0.00 2.59
6132 7186 2.235699 GCCGTTCCTCCGCGTTATC 61.236 63.158 4.92 0.00 0.00 1.75
6133 7187 2.202837 GCCGTTCCTCCGCGTTAT 60.203 61.111 4.92 0.00 0.00 1.89
6134 7188 3.636313 CTGCCGTTCCTCCGCGTTA 62.636 63.158 4.92 0.00 0.00 3.18
6138 7192 2.292794 TATGACTGCCGTTCCTCCGC 62.293 60.000 0.00 0.00 0.00 5.54
6139 7193 0.527817 GTATGACTGCCGTTCCTCCG 60.528 60.000 0.00 0.00 0.00 4.63
6140 7194 0.179081 GGTATGACTGCCGTTCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
6141 7195 0.527817 CGGTATGACTGCCGTTCCTC 60.528 60.000 0.00 0.00 44.63 3.71
6142 7196 1.515954 CGGTATGACTGCCGTTCCT 59.484 57.895 0.00 0.00 44.63 3.36
6143 7197 4.104143 CGGTATGACTGCCGTTCC 57.896 61.111 0.00 0.00 44.63 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.