Multiple sequence alignment - TraesCS6A01G160600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G160600 chr6A 100.000 4291 0 0 1 4291 155223219 155227509 0.000000e+00 7925
1 TraesCS6A01G160600 chr6A 85.902 305 36 5 3721 4019 181909850 181910153 6.920000e-83 318
2 TraesCS6A01G160600 chr6A 95.763 118 5 0 2012 2129 158088026 158087909 1.570000e-44 191
3 TraesCS6A01G160600 chr6A 89.130 138 13 2 2013 2149 613039218 613039082 2.050000e-38 171
4 TraesCS6A01G160600 chr6B 96.817 2042 37 7 1 2016 223573058 223571019 0.000000e+00 3386
5 TraesCS6A01G160600 chr6B 95.278 1567 37 14 2120 3666 223571020 223569471 0.000000e+00 2449
6 TraesCS6A01G160600 chr6B 86.380 279 21 8 4019 4291 223569445 223569178 5.430000e-74 289
7 TraesCS6A01G160600 chr6B 91.667 132 7 4 2002 2131 10905378 10905507 3.410000e-41 180
8 TraesCS6A01G160600 chr6D 93.164 1931 84 15 1 1909 125248517 125246613 0.000000e+00 2791
9 TraesCS6A01G160600 chr6D 93.701 1413 69 12 2318 3717 125246462 125245057 0.000000e+00 2098
10 TraesCS6A01G160600 chr6D 92.400 250 14 1 4042 4291 125244992 125244748 6.830000e-93 351
11 TraesCS6A01G160600 chr6D 94.030 134 8 0 2138 2271 125246608 125246475 2.020000e-48 204
12 TraesCS6A01G160600 chr6D 90.244 123 12 0 4019 4141 125245066 125244944 1.230000e-35 161
13 TraesCS6A01G160600 chr2A 86.513 304 34 5 3721 4018 729555244 729554942 1.150000e-85 327
14 TraesCS6A01G160600 chr2A 95.763 118 5 0 2012 2129 79319262 79319145 1.570000e-44 191
15 TraesCS6A01G160600 chr3A 86.184 304 35 5 3721 4018 55051895 55052197 5.350000e-84 322
16 TraesCS6A01G160600 chr3A 85.161 310 36 8 3721 4022 717621003 717621310 4.170000e-80 309
17 TraesCS6A01G160600 chr4D 85.093 322 39 7 3715 4029 208562314 208562633 1.930000e-83 320
18 TraesCS6A01G160600 chr4D 96.491 114 4 0 2015 2128 160742367 160742254 5.660000e-44 189
19 TraesCS6A01G160600 chr7B 85.397 315 36 7 3716 4021 552567215 552567528 6.920000e-83 318
20 TraesCS6A01G160600 chr7B 88.318 214 25 0 1563 1776 518388301 518388088 1.530000e-64 257
21 TraesCS6A01G160600 chr5B 85.304 313 38 6 3721 4027 616440216 616440526 2.490000e-82 316
22 TraesCS6A01G160600 chr5B 85.574 305 32 8 3721 4018 441406177 441406476 4.170000e-80 309
23 TraesCS6A01G160600 chr5B 95.690 116 5 0 2014 2129 473290852 473290737 2.040000e-43 187
24 TraesCS6A01G160600 chr5B 91.603 131 9 2 2001 2130 336136386 336136515 3.410000e-41 180
25 TraesCS6A01G160600 chr7D 85.390 308 36 6 3716 4018 73143786 73143483 1.160000e-80 311
26 TraesCS6A01G160600 chr7D 87.671 219 27 0 1563 1781 489721570 489721352 5.510000e-64 255
27 TraesCS6A01G160600 chr7A 87.156 218 25 1 1563 1780 556505921 556505707 1.190000e-60 244
28 TraesCS6A01G160600 chr5D 95.726 117 5 0 2012 2128 339105065 339105181 5.660000e-44 189
29 TraesCS6A01G160600 chr3B 93.600 125 6 2 2012 2135 427338343 427338220 7.330000e-43 185
30 TraesCS6A01G160600 chr5A 93.548 124 7 1 2014 2137 382564730 382564852 2.640000e-42 183
31 TraesCS6A01G160600 chr5A 86.577 149 14 4 2015 2160 382790442 382790297 4.440000e-35 159
32 TraesCS6A01G160600 chr1B 88.276 145 11 6 2014 2155 27713412 27713553 7.380000e-38 169
33 TraesCS6A01G160600 chr1B 89.706 136 9 5 2014 2145 576362077 576361943 7.380000e-38 169
34 TraesCS6A01G160600 chr1B 85.714 133 14 5 2015 2145 434188906 434189035 7.480000e-28 135
35 TraesCS6A01G160600 chrUn 85.345 116 17 0 2011 2126 12279380 12279495 2.100000e-23 121
36 TraesCS6A01G160600 chr1D 81.290 155 11 6 2014 2164 461147180 461147040 4.540000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G160600 chr6A 155223219 155227509 4290 False 7925.000000 7925 100.0000 1 4291 1 chr6A.!!$F1 4290
1 TraesCS6A01G160600 chr6B 223569178 223573058 3880 True 2041.333333 3386 92.8250 1 4291 3 chr6B.!!$R1 4290
2 TraesCS6A01G160600 chr6D 125244748 125248517 3769 True 1121.000000 2791 92.7078 1 4291 5 chr6D.!!$R1 4290

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
504 505 0.617935 TTGGCCACATGCTGCTAGTA 59.382 50.000 3.88 0.0 40.92 1.82 F
947 980 1.302192 TGGCTTGACGGGCTTACAC 60.302 57.895 0.00 0.0 0.00 2.90 F
2025 2063 1.887198 CTTGCGATATACTCCCTCCGT 59.113 52.381 0.00 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2105 2143 1.067776 GCATATACTCCCTCCGTTCGG 60.068 57.143 4.74 4.74 0.00 4.30 R
2106 2144 1.887198 AGCATATACTCCCTCCGTTCG 59.113 52.381 0.00 0.00 0.00 3.95 R
3807 3871 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
303 304 4.957296 TGGTTGAGTGAGTCCTTTAACTC 58.043 43.478 1.54 1.54 44.87 3.01
355 356 3.995705 CGAAAATTGTGGCCATGTTTGAT 59.004 39.130 9.72 0.00 0.00 2.57
361 362 4.620589 TGTGGCCATGTTTGATGAAAAT 57.379 36.364 9.72 0.00 0.00 1.82
364 365 2.349275 GGCCATGTTTGATGAAAATGCG 59.651 45.455 0.00 0.00 0.00 4.73
504 505 0.617935 TTGGCCACATGCTGCTAGTA 59.382 50.000 3.88 0.00 40.92 1.82
597 598 1.682854 ACCTCAAGCACCATTGTTGTG 59.317 47.619 0.00 0.00 36.79 3.33
803 804 9.708092 AGTTTATTTAGTTCCTAGTGTCACTTC 57.292 33.333 11.54 0.00 0.00 3.01
947 980 1.302192 TGGCTTGACGGGCTTACAC 60.302 57.895 0.00 0.00 0.00 2.90
1354 1390 3.748048 CCTTGTATTCTACCATGCCATCG 59.252 47.826 0.00 0.00 0.00 3.84
1866 1904 9.197694 GCTACACCATGTGAGAACTATAATTAG 57.802 37.037 0.49 0.00 36.96 1.73
1916 1954 5.200368 AGCAACGTTGATTTTCTCCATTT 57.800 34.783 31.62 0.00 0.00 2.32
2010 2048 5.446143 AGTGATAGATAGGTTCTCTTGCG 57.554 43.478 0.00 0.00 35.79 4.85
2016 2054 8.894731 TGATAGATAGGTTCTCTTGCGATATAC 58.105 37.037 0.00 0.00 35.79 1.47
2017 2055 9.116067 GATAGATAGGTTCTCTTGCGATATACT 57.884 37.037 0.00 0.00 35.79 2.12
2018 2056 7.385778 AGATAGGTTCTCTTGCGATATACTC 57.614 40.000 0.00 0.00 0.00 2.59
2019 2057 4.857509 AGGTTCTCTTGCGATATACTCC 57.142 45.455 0.00 0.00 0.00 3.85
2020 2058 3.574826 AGGTTCTCTTGCGATATACTCCC 59.425 47.826 0.00 0.00 0.00 4.30
2021 2059 3.574826 GGTTCTCTTGCGATATACTCCCT 59.425 47.826 0.00 0.00 0.00 4.20
2022 2060 4.321378 GGTTCTCTTGCGATATACTCCCTC 60.321 50.000 0.00 0.00 0.00 4.30
2023 2061 3.422796 TCTCTTGCGATATACTCCCTCC 58.577 50.000 0.00 0.00 0.00 4.30
2024 2062 2.160205 TCTTGCGATATACTCCCTCCG 58.840 52.381 0.00 0.00 0.00 4.63
2025 2063 1.887198 CTTGCGATATACTCCCTCCGT 59.113 52.381 0.00 0.00 0.00 4.69
2026 2064 1.991121 TGCGATATACTCCCTCCGTT 58.009 50.000 0.00 0.00 0.00 4.44
2027 2065 2.313317 TGCGATATACTCCCTCCGTTT 58.687 47.619 0.00 0.00 0.00 3.60
2028 2066 2.035449 TGCGATATACTCCCTCCGTTTG 59.965 50.000 0.00 0.00 0.00 2.93
2029 2067 2.609737 GCGATATACTCCCTCCGTTTGG 60.610 54.545 0.00 0.00 0.00 3.28
2030 2068 2.889045 CGATATACTCCCTCCGTTTGGA 59.111 50.000 0.00 0.00 43.88 3.53
2031 2069 3.319972 CGATATACTCCCTCCGTTTGGAA 59.680 47.826 0.00 0.00 45.87 3.53
2032 2070 4.021368 CGATATACTCCCTCCGTTTGGAAT 60.021 45.833 0.00 0.00 45.87 3.01
2033 2071 5.510861 CGATATACTCCCTCCGTTTGGAATT 60.511 44.000 0.00 0.00 45.87 2.17
2034 2072 6.294899 CGATATACTCCCTCCGTTTGGAATTA 60.295 42.308 0.00 0.00 45.87 1.40
2035 2073 5.906772 ATACTCCCTCCGTTTGGAATTAT 57.093 39.130 0.00 0.00 45.87 1.28
2036 2074 4.586306 ACTCCCTCCGTTTGGAATTATT 57.414 40.909 0.00 0.00 45.87 1.40
2037 2075 4.930696 ACTCCCTCCGTTTGGAATTATTT 58.069 39.130 0.00 0.00 45.87 1.40
2038 2076 4.705023 ACTCCCTCCGTTTGGAATTATTTG 59.295 41.667 0.00 0.00 45.87 2.32
2039 2077 4.668636 TCCCTCCGTTTGGAATTATTTGT 58.331 39.130 0.00 0.00 45.87 2.83
2040 2078 4.703093 TCCCTCCGTTTGGAATTATTTGTC 59.297 41.667 0.00 0.00 45.87 3.18
2041 2079 4.438200 CCCTCCGTTTGGAATTATTTGTCG 60.438 45.833 0.00 0.00 45.87 4.35
2042 2080 4.438200 CCTCCGTTTGGAATTATTTGTCGG 60.438 45.833 0.00 0.00 45.87 4.79
2043 2081 4.325119 TCCGTTTGGAATTATTTGTCGGA 58.675 39.130 0.00 0.00 42.85 4.55
2044 2082 4.393680 TCCGTTTGGAATTATTTGTCGGAG 59.606 41.667 0.00 0.00 42.85 4.63
2045 2083 4.393680 CCGTTTGGAATTATTTGTCGGAGA 59.606 41.667 0.00 0.00 38.03 3.71
2046 2084 5.106475 CCGTTTGGAATTATTTGTCGGAGAA 60.106 40.000 0.00 0.00 35.71 2.87
2047 2085 6.375377 CGTTTGGAATTATTTGTCGGAGAAA 58.625 36.000 2.59 2.59 39.69 2.52
2048 2086 7.027161 CGTTTGGAATTATTTGTCGGAGAAAT 58.973 34.615 16.10 16.10 39.69 2.17
2049 2087 7.008266 CGTTTGGAATTATTTGTCGGAGAAATG 59.992 37.037 19.84 0.00 39.69 2.32
2050 2088 6.449635 TGGAATTATTTGTCGGAGAAATGG 57.550 37.500 19.84 0.00 39.69 3.16
2051 2089 6.184068 TGGAATTATTTGTCGGAGAAATGGA 58.816 36.000 19.84 10.77 39.69 3.41
2052 2090 6.833416 TGGAATTATTTGTCGGAGAAATGGAT 59.167 34.615 19.84 12.22 39.69 3.41
2053 2091 7.141363 GGAATTATTTGTCGGAGAAATGGATG 58.859 38.462 19.84 0.00 39.69 3.51
2054 2092 7.201821 GGAATTATTTGTCGGAGAAATGGATGT 60.202 37.037 19.84 4.31 39.69 3.06
2055 2093 8.746052 AATTATTTGTCGGAGAAATGGATGTA 57.254 30.769 19.84 0.00 39.69 2.29
2056 2094 8.924511 ATTATTTGTCGGAGAAATGGATGTAT 57.075 30.769 19.84 4.68 39.69 2.29
2057 2095 6.867662 ATTTGTCGGAGAAATGGATGTATC 57.132 37.500 11.81 0.00 39.69 2.24
2058 2096 5.614324 TTGTCGGAGAAATGGATGTATCT 57.386 39.130 0.00 0.00 39.69 1.98
2059 2097 6.724893 TTGTCGGAGAAATGGATGTATCTA 57.275 37.500 0.00 0.00 39.69 1.98
2060 2098 6.332735 TGTCGGAGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 39.69 2.43
2061 2099 6.068670 TGTCGGAGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 39.69 2.43
2062 2100 6.016192 TGTCGGAGAAATGGATGTATCTAGAC 60.016 42.308 0.00 0.00 39.69 2.59
2063 2101 5.181433 TCGGAGAAATGGATGTATCTAGACG 59.819 44.000 0.00 0.00 0.00 4.18
2064 2102 5.048643 CGGAGAAATGGATGTATCTAGACGT 60.049 44.000 0.00 0.00 0.00 4.34
2065 2103 6.148976 CGGAGAAATGGATGTATCTAGACGTA 59.851 42.308 0.00 0.00 0.00 3.57
2066 2104 7.148222 CGGAGAAATGGATGTATCTAGACGTAT 60.148 40.741 0.00 0.00 0.00 3.06
2067 2105 8.524487 GGAGAAATGGATGTATCTAGACGTATT 58.476 37.037 0.00 0.00 0.00 1.89
2068 2106 9.915629 GAGAAATGGATGTATCTAGACGTATTT 57.084 33.333 0.00 0.00 0.00 1.40
2092 2130 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
2093 2131 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
2094 2132 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
2095 2133 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
2096 2134 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
2097 2135 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
2098 2136 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
2099 2137 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
2100 2138 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
2101 2139 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
2102 2140 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
2103 2141 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
2104 2142 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
2105 2143 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
2106 2144 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
2107 2145 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
2108 2146 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
2109 2147 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
2110 2148 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
2111 2149 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
2112 2150 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
2113 2151 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
2114 2152 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
2115 2153 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
2116 2154 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
2117 2155 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
2118 2156 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
2119 2157 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
2120 2158 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
2170 2208 5.730296 ATCAACATAGGGAGTAGGAATCG 57.270 43.478 0.00 0.00 0.00 3.34
2359 2397 1.413118 TGTCAGACTTCTGCACTGGA 58.587 50.000 1.31 0.00 43.46 3.86
2365 2403 2.027377 AGACTTCTGCACTGGAATCCTG 60.027 50.000 4.53 4.53 0.00 3.86
2403 2449 6.539649 TTGTTCTGTTTTGATAAGGAGACG 57.460 37.500 0.00 0.00 0.00 4.18
2547 2593 6.609212 TCAGTAAGAATGAGGTGATAGAAGCT 59.391 38.462 0.00 0.00 0.00 3.74
2742 2788 6.224665 TGCAAATGCTAATTGGCTTTAGAT 57.775 33.333 15.31 0.00 42.45 1.98
2781 2827 5.235186 CACCATTACTTTTCTAGGCATCTCG 59.765 44.000 0.00 0.00 0.00 4.04
3043 3092 9.131791 GCCTCCAAGTTTATTTATATTCCTTCA 57.868 33.333 0.00 0.00 0.00 3.02
3115 3164 5.566469 AGGTTTGGTGCTTAGTGCTTATTA 58.434 37.500 0.00 0.00 43.37 0.98
3164 3213 8.050778 TCATTTATGTTGACCCTGATGTTTAC 57.949 34.615 0.00 0.00 0.00 2.01
3278 3330 5.358298 TCGACGATAATGAAGATGACGAT 57.642 39.130 0.00 0.00 0.00 3.73
3303 3355 3.943381 TGATGAATAAGCACAGCTGAAGG 59.057 43.478 23.35 10.54 39.62 3.46
3493 3551 3.023119 TGTGCTTTGGTGTTGTCTGATT 58.977 40.909 0.00 0.00 0.00 2.57
3577 3635 2.900546 TGGAAGAGAGGTGGTCTTCTTC 59.099 50.000 11.54 4.87 46.27 2.87
3582 3640 2.573915 GAGAGGTGGTCTTCTTCCCATT 59.426 50.000 0.00 0.00 34.71 3.16
3682 3746 9.352191 TCCTTAGATAGTAGACGAGCTTTATTT 57.648 33.333 0.00 0.00 0.00 1.40
3687 3751 8.564574 AGATAGTAGACGAGCTTTATTTCTCTG 58.435 37.037 0.00 0.00 0.00 3.35
3705 3769 2.124403 GTGGCCTCCCTCTGCATG 60.124 66.667 3.32 0.00 0.00 4.06
3723 3787 5.449107 GCATGGATAGATGCACATCTTTT 57.551 39.130 17.73 6.93 45.31 2.27
3724 3788 5.839621 GCATGGATAGATGCACATCTTTTT 58.160 37.500 17.73 4.61 45.31 1.94
3742 3806 2.748461 TTTTAACACAGCACTGACGC 57.252 45.000 4.31 0.00 0.00 5.19
3743 3807 0.579630 TTTAACACAGCACTGACGCG 59.420 50.000 3.53 3.53 36.85 6.01
3744 3808 0.249114 TTAACACAGCACTGACGCGA 60.249 50.000 15.93 0.00 36.85 5.87
3745 3809 0.663269 TAACACAGCACTGACGCGAG 60.663 55.000 15.93 2.26 36.85 5.03
3746 3810 3.771491 CACAGCACTGACGCGAGC 61.771 66.667 15.93 8.68 36.85 5.03
3752 3816 4.121669 ACTGACGCGAGCGCTCAT 62.122 61.111 34.69 20.69 44.19 2.90
3753 3817 2.024729 CTGACGCGAGCGCTCATA 59.975 61.111 34.69 15.47 44.19 2.15
3754 3818 1.371022 CTGACGCGAGCGCTCATAT 60.371 57.895 34.69 19.95 44.19 1.78
3755 3819 0.110192 CTGACGCGAGCGCTCATATA 60.110 55.000 34.69 16.49 44.19 0.86
3756 3820 0.521735 TGACGCGAGCGCTCATATAT 59.478 50.000 34.69 16.31 44.19 0.86
3757 3821 1.735571 TGACGCGAGCGCTCATATATA 59.264 47.619 34.69 14.71 44.19 0.86
3758 3822 2.102633 GACGCGAGCGCTCATATATAC 58.897 52.381 34.69 15.77 44.19 1.47
3759 3823 1.105363 CGCGAGCGCTCATATATACG 58.895 55.000 34.69 20.77 39.32 3.06
3767 3831 4.521010 GCGCTCATATATACGCGTATACA 58.479 43.478 34.45 27.09 46.56 2.29
3768 3832 4.607646 GCGCTCATATATACGCGTATACAG 59.392 45.833 34.45 26.65 46.56 2.74
3769 3833 5.735324 CGCTCATATATACGCGTATACAGT 58.265 41.667 34.45 23.60 40.64 3.55
3770 3834 5.839753 CGCTCATATATACGCGTATACAGTC 59.160 44.000 34.45 21.37 40.64 3.51
3771 3835 6.509039 CGCTCATATATACGCGTATACAGTCA 60.509 42.308 34.45 18.52 40.64 3.41
3772 3836 6.628065 GCTCATATATACGCGTATACAGTCAC 59.372 42.308 34.45 21.29 31.52 3.67
3773 3837 7.008440 TCATATATACGCGTATACAGTCACC 57.992 40.000 34.45 0.00 31.52 4.02
3774 3838 6.820152 TCATATATACGCGTATACAGTCACCT 59.180 38.462 34.45 21.12 31.52 4.00
3775 3839 3.892918 ATACGCGTATACAGTCACCTC 57.107 47.619 29.34 0.00 0.00 3.85
3776 3840 0.737219 ACGCGTATACAGTCACCTCC 59.263 55.000 11.67 0.00 0.00 4.30
3777 3841 1.022735 CGCGTATACAGTCACCTCCT 58.977 55.000 0.00 0.00 0.00 3.69
3778 3842 2.216046 CGCGTATACAGTCACCTCCTA 58.784 52.381 0.00 0.00 0.00 2.94
3779 3843 2.812591 CGCGTATACAGTCACCTCCTAT 59.187 50.000 0.00 0.00 0.00 2.57
3780 3844 3.365064 CGCGTATACAGTCACCTCCTATG 60.365 52.174 0.00 0.00 0.00 2.23
3781 3845 3.819337 GCGTATACAGTCACCTCCTATGA 59.181 47.826 3.32 0.00 0.00 2.15
3782 3846 4.277672 GCGTATACAGTCACCTCCTATGAA 59.722 45.833 3.32 0.00 0.00 2.57
3783 3847 5.047943 GCGTATACAGTCACCTCCTATGAAT 60.048 44.000 3.32 0.00 0.00 2.57
3784 3848 6.382608 CGTATACAGTCACCTCCTATGAATG 58.617 44.000 3.32 1.24 45.34 2.67
3785 3849 3.550437 ACAGTCACCTCCTATGAATGC 57.450 47.619 2.62 0.00 44.06 3.56
3786 3850 2.840038 ACAGTCACCTCCTATGAATGCA 59.160 45.455 2.62 0.00 44.06 3.96
3787 3851 3.201290 CAGTCACCTCCTATGAATGCAC 58.799 50.000 0.00 0.00 35.62 4.57
3788 3852 2.840038 AGTCACCTCCTATGAATGCACA 59.160 45.455 0.00 0.00 0.00 4.57
3789 3853 2.939103 GTCACCTCCTATGAATGCACAC 59.061 50.000 0.00 0.00 0.00 3.82
3790 3854 2.571202 TCACCTCCTATGAATGCACACA 59.429 45.455 0.00 0.00 0.00 3.72
3791 3855 2.679837 CACCTCCTATGAATGCACACAC 59.320 50.000 0.00 0.00 0.00 3.82
3792 3856 1.935873 CCTCCTATGAATGCACACACG 59.064 52.381 0.00 0.00 0.00 4.49
3793 3857 1.328680 CTCCTATGAATGCACACACGC 59.671 52.381 0.00 0.00 0.00 5.34
3800 3864 2.747022 TGCACACACGCATACCCT 59.253 55.556 0.00 0.00 36.86 4.34
3801 3865 1.976112 TGCACACACGCATACCCTA 59.024 52.632 0.00 0.00 36.86 3.53
3802 3866 0.390603 TGCACACACGCATACCCTAC 60.391 55.000 0.00 0.00 36.86 3.18
3803 3867 1.087771 GCACACACGCATACCCTACC 61.088 60.000 0.00 0.00 0.00 3.18
3804 3868 0.461339 CACACACGCATACCCTACCC 60.461 60.000 0.00 0.00 0.00 3.69
3805 3869 0.616679 ACACACGCATACCCTACCCT 60.617 55.000 0.00 0.00 0.00 4.34
3806 3870 0.539986 CACACGCATACCCTACCCTT 59.460 55.000 0.00 0.00 0.00 3.95
3807 3871 1.758280 CACACGCATACCCTACCCTTA 59.242 52.381 0.00 0.00 0.00 2.69
3808 3872 2.367567 CACACGCATACCCTACCCTTAT 59.632 50.000 0.00 0.00 0.00 1.73
3809 3873 2.367567 ACACGCATACCCTACCCTTATG 59.632 50.000 0.00 0.00 0.00 1.90
3810 3874 2.631062 CACGCATACCCTACCCTTATGA 59.369 50.000 0.00 0.00 0.00 2.15
3811 3875 2.897969 ACGCATACCCTACCCTTATGAG 59.102 50.000 0.00 0.00 0.00 2.90
3812 3876 2.353803 CGCATACCCTACCCTTATGAGC 60.354 54.545 0.00 0.00 0.00 4.26
3813 3877 2.637872 GCATACCCTACCCTTATGAGCA 59.362 50.000 0.00 0.00 0.00 4.26
3814 3878 3.557264 GCATACCCTACCCTTATGAGCAC 60.557 52.174 0.00 0.00 0.00 4.40
3815 3879 1.508256 ACCCTACCCTTATGAGCACC 58.492 55.000 0.00 0.00 0.00 5.01
3816 3880 1.009675 ACCCTACCCTTATGAGCACCT 59.990 52.381 0.00 0.00 0.00 4.00
3817 3881 1.694696 CCCTACCCTTATGAGCACCTC 59.305 57.143 0.00 0.00 0.00 3.85
3818 3882 1.694696 CCTACCCTTATGAGCACCTCC 59.305 57.143 0.00 0.00 0.00 4.30
3819 3883 1.341531 CTACCCTTATGAGCACCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
3820 3884 0.325296 ACCCTTATGAGCACCTCCGA 60.325 55.000 0.00 0.00 0.00 4.55
3821 3885 0.390860 CCCTTATGAGCACCTCCGAG 59.609 60.000 0.00 0.00 0.00 4.63
3822 3886 1.403814 CCTTATGAGCACCTCCGAGA 58.596 55.000 0.00 0.00 0.00 4.04
3823 3887 1.339610 CCTTATGAGCACCTCCGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
3824 3888 2.302260 CTTATGAGCACCTCCGAGAGA 58.698 52.381 0.00 0.00 0.00 3.10
3825 3889 1.681538 TATGAGCACCTCCGAGAGAC 58.318 55.000 0.00 0.00 0.00 3.36
3826 3890 0.033601 ATGAGCACCTCCGAGAGACT 60.034 55.000 0.00 0.00 0.00 3.24
3827 3891 0.962855 TGAGCACCTCCGAGAGACTG 60.963 60.000 0.00 0.22 0.00 3.51
3828 3892 0.678366 GAGCACCTCCGAGAGACTGA 60.678 60.000 0.00 0.00 0.00 3.41
3829 3893 0.679640 AGCACCTCCGAGAGACTGAG 60.680 60.000 0.00 0.00 0.00 3.35
3830 3894 0.963355 GCACCTCCGAGAGACTGAGT 60.963 60.000 0.00 0.00 0.00 3.41
3831 3895 1.540267 CACCTCCGAGAGACTGAGTT 58.460 55.000 0.00 0.00 0.00 3.01
3832 3896 1.201181 CACCTCCGAGAGACTGAGTTG 59.799 57.143 0.00 0.00 0.00 3.16
3833 3897 1.074084 ACCTCCGAGAGACTGAGTTGA 59.926 52.381 0.00 0.00 0.00 3.18
3834 3898 1.470890 CCTCCGAGAGACTGAGTTGAC 59.529 57.143 0.00 0.00 0.00 3.18
3835 3899 2.155279 CTCCGAGAGACTGAGTTGACA 58.845 52.381 0.00 0.00 0.00 3.58
3836 3900 2.752354 CTCCGAGAGACTGAGTTGACAT 59.248 50.000 0.00 0.00 0.00 3.06
3837 3901 3.942115 CTCCGAGAGACTGAGTTGACATA 59.058 47.826 0.00 0.00 0.00 2.29
3838 3902 4.527944 TCCGAGAGACTGAGTTGACATAT 58.472 43.478 0.00 0.00 0.00 1.78
3839 3903 4.576873 TCCGAGAGACTGAGTTGACATATC 59.423 45.833 0.00 0.00 0.00 1.63
3840 3904 4.336713 CCGAGAGACTGAGTTGACATATCA 59.663 45.833 0.00 0.00 0.00 2.15
3841 3905 5.009510 CCGAGAGACTGAGTTGACATATCAT 59.990 44.000 0.00 0.00 33.85 2.45
3842 3906 6.460814 CCGAGAGACTGAGTTGACATATCATT 60.461 42.308 0.00 0.00 33.85 2.57
3843 3907 6.977502 CGAGAGACTGAGTTGACATATCATTT 59.022 38.462 0.00 0.00 33.85 2.32
3844 3908 7.167302 CGAGAGACTGAGTTGACATATCATTTC 59.833 40.741 0.00 0.00 33.85 2.17
3845 3909 6.977502 AGAGACTGAGTTGACATATCATTTCG 59.022 38.462 0.00 0.00 33.85 3.46
3846 3910 6.867550 AGACTGAGTTGACATATCATTTCGA 58.132 36.000 0.00 0.00 33.85 3.71
3847 3911 6.977502 AGACTGAGTTGACATATCATTTCGAG 59.022 38.462 0.00 0.00 33.85 4.04
3848 3912 6.867550 ACTGAGTTGACATATCATTTCGAGA 58.132 36.000 0.00 0.00 33.85 4.04
3849 3913 7.495901 ACTGAGTTGACATATCATTTCGAGAT 58.504 34.615 0.00 0.00 33.85 2.75
3850 3914 7.984050 ACTGAGTTGACATATCATTTCGAGATT 59.016 33.333 0.00 0.00 33.85 2.40
3851 3915 8.722480 TGAGTTGACATATCATTTCGAGATTT 57.278 30.769 0.00 0.00 33.85 2.17
3852 3916 9.816354 TGAGTTGACATATCATTTCGAGATTTA 57.184 29.630 0.00 0.00 33.85 1.40
3854 3918 9.599866 AGTTGACATATCATTTCGAGATTTACA 57.400 29.630 0.00 0.00 33.85 2.41
3862 3926 7.962964 TCATTTCGAGATTTACAAAGTCACT 57.037 32.000 0.00 0.00 0.00 3.41
3863 3927 7.796838 TCATTTCGAGATTTACAAAGTCACTG 58.203 34.615 0.00 0.00 0.00 3.66
3864 3928 7.441157 TCATTTCGAGATTTACAAAGTCACTGT 59.559 33.333 0.00 0.00 0.00 3.55
3865 3929 8.708742 CATTTCGAGATTTACAAAGTCACTGTA 58.291 33.333 0.00 0.00 0.00 2.74
3866 3930 7.869016 TTCGAGATTTACAAAGTCACTGTAG 57.131 36.000 0.00 0.00 31.17 2.74
3867 3931 6.387465 TCGAGATTTACAAAGTCACTGTAGG 58.613 40.000 0.00 0.00 31.17 3.18
3868 3932 5.062308 CGAGATTTACAAAGTCACTGTAGGC 59.938 44.000 0.00 0.00 31.17 3.93
3869 3933 4.929808 AGATTTACAAAGTCACTGTAGGCG 59.070 41.667 0.00 0.00 31.17 5.52
3870 3934 3.738830 TTACAAAGTCACTGTAGGCGT 57.261 42.857 0.00 0.00 31.17 5.68
3871 3935 2.150397 ACAAAGTCACTGTAGGCGTC 57.850 50.000 0.00 0.00 0.00 5.19
3872 3936 1.687123 ACAAAGTCACTGTAGGCGTCT 59.313 47.619 0.00 0.00 0.00 4.18
3873 3937 2.288273 ACAAAGTCACTGTAGGCGTCTC 60.288 50.000 0.00 0.00 0.00 3.36
3874 3938 0.522180 AAGTCACTGTAGGCGTCTCG 59.478 55.000 0.00 0.00 0.00 4.04
3875 3939 0.605860 AGTCACTGTAGGCGTCTCGT 60.606 55.000 0.00 0.00 0.00 4.18
3876 3940 0.179194 GTCACTGTAGGCGTCTCGTC 60.179 60.000 0.00 0.00 0.00 4.20
3877 3941 1.226046 CACTGTAGGCGTCTCGTCG 60.226 63.158 0.00 0.00 36.23 5.12
3878 3942 1.670406 ACTGTAGGCGTCTCGTCGT 60.670 57.895 0.00 0.00 36.23 4.34
3879 3943 1.060622 CTGTAGGCGTCTCGTCGTC 59.939 63.158 0.00 0.00 36.23 4.20
3880 3944 2.021106 GTAGGCGTCTCGTCGTCG 59.979 66.667 0.00 0.00 40.52 5.12
3881 3945 2.125952 TAGGCGTCTCGTCGTCGA 60.126 61.111 4.42 4.42 44.12 4.20
3882 3946 1.520120 TAGGCGTCTCGTCGTCGAT 60.520 57.895 5.00 0.00 45.21 3.59
3883 3947 1.759293 TAGGCGTCTCGTCGTCGATG 61.759 60.000 8.20 8.20 45.21 3.84
3884 3948 2.648102 GCGTCTCGTCGTCGATGG 60.648 66.667 14.28 5.73 45.21 3.51
3885 3949 3.087176 CGTCTCGTCGTCGATGGA 58.913 61.111 14.28 7.87 45.21 3.41
3886 3950 1.422662 CGTCTCGTCGTCGATGGAA 59.577 57.895 14.28 0.53 45.21 3.53
3887 3951 0.179207 CGTCTCGTCGTCGATGGAAA 60.179 55.000 14.28 0.00 45.21 3.13
3888 3952 1.257539 GTCTCGTCGTCGATGGAAAC 58.742 55.000 14.28 6.78 45.21 2.78
3889 3953 0.876399 TCTCGTCGTCGATGGAAACA 59.124 50.000 14.28 0.00 45.21 2.83
3905 3969 5.175859 TGGAAACATCTCCTACTAAAAGCG 58.824 41.667 0.00 0.00 36.35 4.68
3906 3970 4.034163 GGAAACATCTCCTACTAAAAGCGC 59.966 45.833 0.00 0.00 32.21 5.92
3907 3971 3.887621 ACATCTCCTACTAAAAGCGCA 57.112 42.857 11.47 0.00 0.00 6.09
3908 3972 4.408182 ACATCTCCTACTAAAAGCGCAT 57.592 40.909 11.47 0.00 0.00 4.73
3909 3973 4.372656 ACATCTCCTACTAAAAGCGCATC 58.627 43.478 11.47 0.00 0.00 3.91
3910 3974 3.079960 TCTCCTACTAAAAGCGCATCG 57.920 47.619 11.47 0.00 0.00 3.84
3921 3985 4.131376 CGCATCGCTGGAAATCCT 57.869 55.556 0.44 0.00 36.82 3.24
3922 3986 1.645455 CGCATCGCTGGAAATCCTG 59.355 57.895 0.44 1.39 37.93 3.86
3923 3987 0.811219 CGCATCGCTGGAAATCCTGA 60.811 55.000 10.20 1.98 37.15 3.86
3924 3988 1.382522 GCATCGCTGGAAATCCTGAA 58.617 50.000 10.20 0.00 37.15 3.02
3925 3989 1.745087 GCATCGCTGGAAATCCTGAAA 59.255 47.619 10.20 0.00 37.15 2.69
3926 3990 2.360165 GCATCGCTGGAAATCCTGAAAT 59.640 45.455 10.20 0.52 37.15 2.17
3927 3991 3.565482 GCATCGCTGGAAATCCTGAAATA 59.435 43.478 10.20 0.00 37.15 1.40
3928 3992 4.036734 GCATCGCTGGAAATCCTGAAATAA 59.963 41.667 10.20 0.00 37.15 1.40
3929 3993 5.450412 GCATCGCTGGAAATCCTGAAATAAA 60.450 40.000 10.20 0.00 37.15 1.40
3930 3994 6.736794 GCATCGCTGGAAATCCTGAAATAAAT 60.737 38.462 10.20 0.00 37.15 1.40
3931 3995 6.773976 TCGCTGGAAATCCTGAAATAAATT 57.226 33.333 10.20 0.00 37.15 1.82
3932 3996 6.795399 TCGCTGGAAATCCTGAAATAAATTC 58.205 36.000 10.20 0.00 37.15 2.17
3933 3997 6.376864 TCGCTGGAAATCCTGAAATAAATTCA 59.623 34.615 10.20 0.00 45.71 2.57
3947 4011 9.236691 TGAAATAAATTCAGAAATAATGCGAGC 57.763 29.630 0.00 0.00 43.08 5.03
3948 4012 9.236691 GAAATAAATTCAGAAATAATGCGAGCA 57.763 29.630 0.00 0.00 37.99 4.26
3949 4013 9.754382 AAATAAATTCAGAAATAATGCGAGCAT 57.246 25.926 4.52 4.52 38.46 3.79
3950 4014 8.961294 ATAAATTCAGAAATAATGCGAGCATC 57.039 30.769 11.26 0.00 35.31 3.91
3951 4015 6.381481 AATTCAGAAATAATGCGAGCATCA 57.619 33.333 11.26 0.00 35.31 3.07
3952 4016 5.413969 TTCAGAAATAATGCGAGCATCAG 57.586 39.130 11.26 0.00 35.31 2.90
3953 4017 3.811497 TCAGAAATAATGCGAGCATCAGG 59.189 43.478 11.26 0.00 35.31 3.86
3954 4018 3.811497 CAGAAATAATGCGAGCATCAGGA 59.189 43.478 11.26 0.00 35.31 3.86
3955 4019 4.454847 CAGAAATAATGCGAGCATCAGGAT 59.545 41.667 11.26 0.00 35.31 3.24
3956 4020 5.048921 CAGAAATAATGCGAGCATCAGGATT 60.049 40.000 11.26 6.38 35.31 3.01
3957 4021 5.533903 AGAAATAATGCGAGCATCAGGATTT 59.466 36.000 11.26 13.27 35.31 2.17
3958 4022 4.761235 ATAATGCGAGCATCAGGATTTG 57.239 40.909 11.26 0.00 35.31 2.32
3959 4023 2.336945 ATGCGAGCATCAGGATTTGA 57.663 45.000 4.52 0.00 40.85 2.69
3960 4024 1.372582 TGCGAGCATCAGGATTTGAC 58.627 50.000 0.00 0.00 38.99 3.18
3961 4025 0.659957 GCGAGCATCAGGATTTGACC 59.340 55.000 0.00 0.00 38.99 4.02
3962 4026 1.303309 CGAGCATCAGGATTTGACCC 58.697 55.000 0.00 0.00 38.99 4.46
3963 4027 1.134280 CGAGCATCAGGATTTGACCCT 60.134 52.381 0.00 0.00 38.99 4.34
3971 4035 2.566746 AGGATTTGACCCTGATGGACT 58.433 47.619 0.00 0.00 38.00 3.85
3972 4036 2.240667 AGGATTTGACCCTGATGGACTG 59.759 50.000 0.00 0.00 38.00 3.51
3973 4037 2.239654 GGATTTGACCCTGATGGACTGA 59.760 50.000 0.00 0.00 38.00 3.41
3974 4038 3.539604 GATTTGACCCTGATGGACTGAG 58.460 50.000 0.00 0.00 38.00 3.35
3975 4039 1.279496 TTGACCCTGATGGACTGAGG 58.721 55.000 0.00 0.00 38.00 3.86
3976 4040 0.413434 TGACCCTGATGGACTGAGGA 59.587 55.000 0.00 0.00 38.00 3.71
3977 4041 1.008815 TGACCCTGATGGACTGAGGAT 59.991 52.381 0.00 0.00 38.00 3.24
3978 4042 2.247372 TGACCCTGATGGACTGAGGATA 59.753 50.000 0.00 0.00 38.00 2.59
3979 4043 3.116590 TGACCCTGATGGACTGAGGATAT 60.117 47.826 0.00 0.00 38.00 1.63
3980 4044 3.513515 GACCCTGATGGACTGAGGATATC 59.486 52.174 0.00 0.00 38.00 1.63
3981 4045 3.116590 ACCCTGATGGACTGAGGATATCA 60.117 47.826 4.83 0.00 38.00 2.15
3982 4046 3.260380 CCCTGATGGACTGAGGATATCAC 59.740 52.174 4.83 0.00 35.39 3.06
3983 4047 4.158786 CCTGATGGACTGAGGATATCACT 58.841 47.826 4.83 0.00 32.13 3.41
3984 4048 4.021280 CCTGATGGACTGAGGATATCACTG 60.021 50.000 4.83 5.02 32.13 3.66
3985 4049 4.550669 TGATGGACTGAGGATATCACTGT 58.449 43.478 4.83 8.00 33.22 3.55
3986 4050 4.964897 TGATGGACTGAGGATATCACTGTT 59.035 41.667 4.83 0.00 33.22 3.16
3987 4051 5.069648 TGATGGACTGAGGATATCACTGTTC 59.930 44.000 4.83 7.57 33.22 3.18
3988 4052 3.706594 TGGACTGAGGATATCACTGTTCC 59.293 47.826 4.83 5.18 33.22 3.62
3989 4053 3.964031 GGACTGAGGATATCACTGTTCCT 59.036 47.826 4.83 0.00 42.58 3.36
3996 4060 5.529289 AGGATATCACTGTTCCTCTAACCA 58.471 41.667 4.83 0.00 34.80 3.67
3997 4061 6.146760 AGGATATCACTGTTCCTCTAACCAT 58.853 40.000 4.83 0.00 34.80 3.55
3998 4062 6.617371 AGGATATCACTGTTCCTCTAACCATT 59.383 38.462 4.83 0.00 34.80 3.16
3999 4063 6.931840 GGATATCACTGTTCCTCTAACCATTC 59.068 42.308 4.83 0.00 37.27 2.67
4000 4064 5.762179 ATCACTGTTCCTCTAACCATTCA 57.238 39.130 0.00 0.00 37.27 2.57
4001 4065 5.560722 TCACTGTTCCTCTAACCATTCAA 57.439 39.130 0.00 0.00 37.27 2.69
4002 4066 5.305585 TCACTGTTCCTCTAACCATTCAAC 58.694 41.667 0.00 0.00 37.27 3.18
4003 4067 4.455877 CACTGTTCCTCTAACCATTCAACC 59.544 45.833 0.00 0.00 37.27 3.77
4004 4068 4.104102 ACTGTTCCTCTAACCATTCAACCA 59.896 41.667 0.00 0.00 37.27 3.67
4005 4069 4.394729 TGTTCCTCTAACCATTCAACCAC 58.605 43.478 0.00 0.00 37.27 4.16
4006 4070 4.141367 TGTTCCTCTAACCATTCAACCACA 60.141 41.667 0.00 0.00 37.27 4.17
4007 4071 4.286297 TCCTCTAACCATTCAACCACAG 57.714 45.455 0.00 0.00 0.00 3.66
4008 4072 3.009033 TCCTCTAACCATTCAACCACAGG 59.991 47.826 0.00 0.00 0.00 4.00
4009 4073 3.244911 CCTCTAACCATTCAACCACAGGT 60.245 47.826 0.00 0.00 37.65 4.00
4019 4083 4.079446 CCACAGGTTGGTTCGCAT 57.921 55.556 0.00 0.00 41.10 4.73
4020 4084 3.241493 CCACAGGTTGGTTCGCATA 57.759 52.632 0.00 0.00 41.10 3.14
4021 4085 1.086696 CCACAGGTTGGTTCGCATAG 58.913 55.000 0.00 0.00 41.10 2.23
4022 4086 1.338674 CCACAGGTTGGTTCGCATAGA 60.339 52.381 0.00 0.00 41.10 1.98
4023 4087 2.632377 CACAGGTTGGTTCGCATAGAT 58.368 47.619 0.00 0.00 0.00 1.98
4024 4088 2.352651 CACAGGTTGGTTCGCATAGATG 59.647 50.000 0.00 0.00 0.00 2.90
4079 4147 6.149474 GTCCAGTTGCAAGTATATTTCACTGT 59.851 38.462 6.43 0.00 0.00 3.55
4090 4158 3.764885 ATTTCACTGTCATTTAGGCGC 57.235 42.857 0.00 0.00 0.00 6.53
4091 4159 1.075542 TTCACTGTCATTTAGGCGCG 58.924 50.000 0.00 0.00 0.00 6.86
4103 4222 4.688511 TTTAGGCGCGACAAAATTACAT 57.311 36.364 17.71 0.00 0.00 2.29
4129 4248 7.806690 TGTCAAGTTGCAAGTATATTTCACTC 58.193 34.615 7.33 0.00 0.00 3.51
4131 4250 6.871492 TCAAGTTGCAAGTATATTTCACTCGA 59.129 34.615 7.33 0.00 0.00 4.04
4195 4314 5.588246 TCATACCGTTACCGTTACAGATACA 59.412 40.000 0.00 0.00 0.00 2.29
4196 4315 4.361451 ACCGTTACCGTTACAGATACAG 57.639 45.455 0.00 0.00 0.00 2.74
4197 4316 3.758554 ACCGTTACCGTTACAGATACAGT 59.241 43.478 0.00 0.00 0.00 3.55
4198 4317 4.941263 ACCGTTACCGTTACAGATACAGTA 59.059 41.667 0.00 0.00 0.00 2.74
4199 4318 5.590259 ACCGTTACCGTTACAGATACAGTAT 59.410 40.000 0.00 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.086696 CGACGAGCCACCAAATTCAT 58.913 50.000 0.00 0.00 0.00 2.57
303 304 8.378421 GTCGATATCAATACACACATCATCATG 58.622 37.037 3.12 0.00 35.92 3.07
355 356 0.031857 CTTGTGGCCACGCATTTTCA 59.968 50.000 30.07 7.92 36.90 2.69
504 505 2.958355 ACAGTGTTGCCAACTTGCTATT 59.042 40.909 9.30 0.00 0.00 1.73
597 598 1.522258 CGGCAGCAACAATGAAAACAC 59.478 47.619 0.00 0.00 0.00 3.32
848 849 9.640963 ACAAAGAAGAGTAAGATATGTGTACAC 57.359 33.333 19.36 19.36 0.00 2.90
947 980 3.370978 CACACATTTAAGGGTCACTAGCG 59.629 47.826 0.00 0.00 0.00 4.26
985 1020 5.470437 GCTTGGGCATAACTAACTATCCTTC 59.530 44.000 0.00 0.00 38.54 3.46
1810 1847 2.119801 AAGCACCAAGTGATAGCAGG 57.880 50.000 0.00 0.00 35.23 4.85
1866 1904 7.865706 ATGAACTGGGTCATGTATTTCTTAC 57.134 36.000 0.00 0.00 36.86 2.34
2010 2048 4.950205 TTCCAAACGGAGGGAGTATATC 57.050 45.455 0.00 0.00 34.02 1.63
2016 2054 4.705023 ACAAATAATTCCAAACGGAGGGAG 59.295 41.667 0.00 0.00 34.02 4.30
2017 2055 4.668636 ACAAATAATTCCAAACGGAGGGA 58.331 39.130 0.00 0.00 32.88 4.20
2018 2056 4.438200 CGACAAATAATTCCAAACGGAGGG 60.438 45.833 0.00 0.00 32.88 4.30
2019 2057 4.438200 CCGACAAATAATTCCAAACGGAGG 60.438 45.833 0.00 0.00 40.16 4.30
2020 2058 4.393680 TCCGACAAATAATTCCAAACGGAG 59.606 41.667 0.00 0.00 41.32 4.63
2021 2059 4.325119 TCCGACAAATAATTCCAAACGGA 58.675 39.130 0.00 0.00 43.35 4.69
2022 2060 4.393680 TCTCCGACAAATAATTCCAAACGG 59.606 41.667 0.00 0.00 39.30 4.44
2023 2061 5.539582 TCTCCGACAAATAATTCCAAACG 57.460 39.130 0.00 0.00 0.00 3.60
2024 2062 7.275560 CCATTTCTCCGACAAATAATTCCAAAC 59.724 37.037 0.00 0.00 0.00 2.93
2025 2063 7.177568 TCCATTTCTCCGACAAATAATTCCAAA 59.822 33.333 0.00 0.00 0.00 3.28
2026 2064 6.661377 TCCATTTCTCCGACAAATAATTCCAA 59.339 34.615 0.00 0.00 0.00 3.53
2027 2065 6.184068 TCCATTTCTCCGACAAATAATTCCA 58.816 36.000 0.00 0.00 0.00 3.53
2028 2066 6.693315 TCCATTTCTCCGACAAATAATTCC 57.307 37.500 0.00 0.00 0.00 3.01
2029 2067 7.707104 ACATCCATTTCTCCGACAAATAATTC 58.293 34.615 0.00 0.00 0.00 2.17
2030 2068 7.645058 ACATCCATTTCTCCGACAAATAATT 57.355 32.000 0.00 0.00 0.00 1.40
2031 2069 8.924511 ATACATCCATTTCTCCGACAAATAAT 57.075 30.769 0.00 0.00 0.00 1.28
2032 2070 8.210946 AGATACATCCATTTCTCCGACAAATAA 58.789 33.333 0.00 0.00 0.00 1.40
2033 2071 7.735917 AGATACATCCATTTCTCCGACAAATA 58.264 34.615 0.00 0.00 0.00 1.40
2034 2072 6.595682 AGATACATCCATTTCTCCGACAAAT 58.404 36.000 0.00 0.00 0.00 2.32
2035 2073 5.989477 AGATACATCCATTTCTCCGACAAA 58.011 37.500 0.00 0.00 0.00 2.83
2036 2074 5.614324 AGATACATCCATTTCTCCGACAA 57.386 39.130 0.00 0.00 0.00 3.18
2037 2075 6.016192 GTCTAGATACATCCATTTCTCCGACA 60.016 42.308 0.00 0.00 0.00 4.35
2038 2076 6.383415 GTCTAGATACATCCATTTCTCCGAC 58.617 44.000 0.00 0.00 0.00 4.79
2039 2077 5.181433 CGTCTAGATACATCCATTTCTCCGA 59.819 44.000 0.00 0.00 0.00 4.55
2040 2078 5.048643 ACGTCTAGATACATCCATTTCTCCG 60.049 44.000 0.00 0.00 0.00 4.63
2041 2079 6.334102 ACGTCTAGATACATCCATTTCTCC 57.666 41.667 0.00 0.00 0.00 3.71
2042 2080 9.915629 AAATACGTCTAGATACATCCATTTCTC 57.084 33.333 0.00 0.00 0.00 2.87
2066 2104 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
2067 2105 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
2068 2106 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
2069 2107 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
2070 2108 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
2071 2109 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
2072 2110 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
2073 2111 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
2074 2112 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
2075 2113 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
2076 2114 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
2077 2115 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
2078 2116 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
2079 2117 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
2080 2118 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
2081 2119 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
2082 2120 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
2083 2121 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
2084 2122 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
2085 2123 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
2086 2124 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
2087 2125 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
2088 2126 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
2089 2127 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
2090 2128 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
2091 2129 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
2092 2130 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
2093 2131 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
2094 2132 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
2095 2133 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
2096 2134 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
2097 2135 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
2098 2136 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
2099 2137 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
2100 2138 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
2101 2139 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
2102 2140 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
2103 2141 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
2104 2142 2.511659 CATATACTCCCTCCGTTCGGA 58.488 52.381 13.34 13.34 0.00 4.55
2105 2143 1.067776 GCATATACTCCCTCCGTTCGG 60.068 57.143 4.74 4.74 0.00 4.30
2106 2144 1.887198 AGCATATACTCCCTCCGTTCG 59.113 52.381 0.00 0.00 0.00 3.95
2107 2145 5.185249 TGATAAGCATATACTCCCTCCGTTC 59.815 44.000 0.00 0.00 0.00 3.95
2108 2146 5.084519 TGATAAGCATATACTCCCTCCGTT 58.915 41.667 0.00 0.00 0.00 4.44
2109 2147 4.673968 TGATAAGCATATACTCCCTCCGT 58.326 43.478 0.00 0.00 0.00 4.69
2110 2148 5.595885 CATGATAAGCATATACTCCCTCCG 58.404 45.833 0.00 0.00 34.82 4.63
2111 2149 5.104776 TGCATGATAAGCATATACTCCCTCC 60.105 44.000 0.00 0.00 37.02 4.30
2112 2150 5.982356 TGCATGATAAGCATATACTCCCTC 58.018 41.667 0.00 0.00 37.02 4.30
2113 2151 6.378661 TTGCATGATAAGCATATACTCCCT 57.621 37.500 0.00 0.00 42.33 4.20
2114 2152 7.770433 TGTATTGCATGATAAGCATATACTCCC 59.230 37.037 0.00 0.00 42.33 4.30
2115 2153 8.722480 TGTATTGCATGATAAGCATATACTCC 57.278 34.615 0.00 0.00 42.33 3.85
2323 2361 4.833380 TCTGACATATCTACCTAGTTGCCC 59.167 45.833 0.00 0.00 0.00 5.36
2359 2397 7.360113 ACAAAGAAACATGTAAACCAGGATT 57.640 32.000 0.00 0.00 0.00 3.01
2365 2403 8.474006 AAACAGAACAAAGAAACATGTAAACC 57.526 30.769 0.00 0.00 0.00 3.27
2403 2449 4.216257 AGCAACACATCAAGGACATAACAC 59.784 41.667 0.00 0.00 0.00 3.32
2547 2593 4.962362 TCTCCTGCACTGGTCTCATTTATA 59.038 41.667 0.00 0.00 0.00 0.98
2666 2712 8.974060 TTAACCAACAGAAAAGTATGAGAGTT 57.026 30.769 0.00 0.00 0.00 3.01
2732 2778 6.650807 GCAGCAGTATAACATATCTAAAGCCA 59.349 38.462 0.00 0.00 0.00 4.75
2742 2788 6.826668 AGTAATGGTGCAGCAGTATAACATA 58.173 36.000 26.35 4.02 0.00 2.29
2750 2796 3.490348 AGAAAAGTAATGGTGCAGCAGT 58.510 40.909 24.45 23.80 0.00 4.40
2781 2827 2.262423 AAGTGTCCTTCTGAACTGCC 57.738 50.000 0.00 0.00 0.00 4.85
3043 3092 6.947644 AAATTTCTTCAAAAGCCAAAGCAT 57.052 29.167 0.00 0.00 43.56 3.79
3078 3127 1.474077 CAAACCTCCTATGCAGTTGCC 59.526 52.381 1.06 0.00 41.18 4.52
3079 3128 1.474077 CCAAACCTCCTATGCAGTTGC 59.526 52.381 0.00 0.00 42.50 4.17
3115 3164 4.265073 GAAACTCTCATAATGTGGGCTGT 58.735 43.478 0.00 0.00 0.00 4.40
3278 3330 4.773013 TCAGCTGTGCTTATTCATCATCA 58.227 39.130 14.67 0.00 36.40 3.07
3303 3355 3.071602 TGGCCTATTCAGAATGGCTAGAC 59.928 47.826 24.28 14.59 44.36 2.59
3326 3378 3.075005 GGCTACCGAGGGCTGACA 61.075 66.667 0.00 0.00 0.00 3.58
3493 3551 8.995027 AGTTTTCAATGGCATGGTTATCTATA 57.005 30.769 0.00 0.00 0.00 1.31
3666 3730 5.517054 CACCAGAGAAATAAAGCTCGTCTAC 59.483 44.000 0.00 0.00 36.29 2.59
3682 3746 2.039624 GAGGGAGGCCACCAGAGA 59.960 66.667 21.72 0.00 0.00 3.10
3687 3751 3.415087 ATGCAGAGGGAGGCCACC 61.415 66.667 11.39 11.39 0.00 4.61
3722 3786 2.537931 CGCGTCAGTGCTGTGTTAAAAA 60.538 45.455 0.00 0.00 0.00 1.94
3723 3787 1.004398 CGCGTCAGTGCTGTGTTAAAA 60.004 47.619 0.00 0.00 0.00 1.52
3724 3788 0.579630 CGCGTCAGTGCTGTGTTAAA 59.420 50.000 0.00 0.00 0.00 1.52
3725 3789 0.249114 TCGCGTCAGTGCTGTGTTAA 60.249 50.000 5.77 0.00 0.00 2.01
3726 3790 0.663269 CTCGCGTCAGTGCTGTGTTA 60.663 55.000 5.77 0.00 0.00 2.41
3727 3791 1.951130 CTCGCGTCAGTGCTGTGTT 60.951 57.895 5.77 0.00 0.00 3.32
3728 3792 2.355126 CTCGCGTCAGTGCTGTGT 60.355 61.111 5.77 0.00 0.00 3.72
3729 3793 3.771491 GCTCGCGTCAGTGCTGTG 61.771 66.667 5.77 0.00 0.00 3.66
3741 3805 0.840729 GCGTATATATGAGCGCTCGC 59.159 55.000 30.75 24.04 45.48 5.03
3742 3806 1.105363 CGCGTATATATGAGCGCTCG 58.895 55.000 30.75 18.58 46.56 5.03
3747 3811 6.628065 GTGACTGTATACGCGTATATATGAGC 59.372 42.308 34.30 22.98 31.45 4.26
3748 3812 7.011202 AGGTGACTGTATACGCGTATATATGAG 59.989 40.741 34.30 27.44 41.13 2.90
3749 3813 6.820152 AGGTGACTGTATACGCGTATATATGA 59.180 38.462 34.30 20.35 41.13 2.15
3750 3814 7.012959 AGGTGACTGTATACGCGTATATATG 57.987 40.000 34.30 27.51 41.13 1.78
3751 3815 6.259608 GGAGGTGACTGTATACGCGTATATAT 59.740 42.308 34.30 24.34 44.43 0.86
3752 3816 5.582269 GGAGGTGACTGTATACGCGTATATA 59.418 44.000 34.30 30.58 44.43 0.86
3753 3817 4.394300 GGAGGTGACTGTATACGCGTATAT 59.606 45.833 34.30 22.57 44.43 0.86
3754 3818 3.748048 GGAGGTGACTGTATACGCGTATA 59.252 47.826 30.02 30.02 44.43 1.47
3755 3819 2.551459 GGAGGTGACTGTATACGCGTAT 59.449 50.000 32.13 32.13 44.43 3.06
3756 3820 1.942657 GGAGGTGACTGTATACGCGTA 59.057 52.381 22.94 22.94 44.43 4.42
3757 3821 0.737219 GGAGGTGACTGTATACGCGT 59.263 55.000 19.17 19.17 44.43 6.01
3758 3822 1.022735 AGGAGGTGACTGTATACGCG 58.977 55.000 3.53 3.53 44.43 6.01
3759 3823 3.819337 TCATAGGAGGTGACTGTATACGC 59.181 47.826 0.00 0.00 44.43 4.42
3760 3824 6.382608 CATTCATAGGAGGTGACTGTATACG 58.617 44.000 0.00 0.00 44.43 3.06
3761 3825 6.159988 GCATTCATAGGAGGTGACTGTATAC 58.840 44.000 0.00 0.00 44.43 1.47
3762 3826 5.838521 TGCATTCATAGGAGGTGACTGTATA 59.161 40.000 0.00 0.00 44.43 1.47
3763 3827 4.655649 TGCATTCATAGGAGGTGACTGTAT 59.344 41.667 0.00 0.00 44.43 2.29
3764 3828 4.030216 TGCATTCATAGGAGGTGACTGTA 58.970 43.478 0.00 0.00 44.43 2.74
3765 3829 2.840038 TGCATTCATAGGAGGTGACTGT 59.160 45.455 0.00 0.00 44.43 3.55
3766 3830 3.201290 GTGCATTCATAGGAGGTGACTG 58.799 50.000 0.00 0.00 44.43 3.51
3768 3832 2.939103 GTGTGCATTCATAGGAGGTGAC 59.061 50.000 0.00 0.00 0.00 3.67
3769 3833 2.571202 TGTGTGCATTCATAGGAGGTGA 59.429 45.455 0.00 0.00 0.00 4.02
3770 3834 2.679837 GTGTGTGCATTCATAGGAGGTG 59.320 50.000 0.00 0.00 0.00 4.00
3771 3835 2.677902 CGTGTGTGCATTCATAGGAGGT 60.678 50.000 0.00 0.00 0.00 3.85
3772 3836 1.935873 CGTGTGTGCATTCATAGGAGG 59.064 52.381 0.00 0.00 0.00 4.30
3773 3837 1.328680 GCGTGTGTGCATTCATAGGAG 59.671 52.381 0.00 0.00 34.15 3.69
3774 3838 1.338579 TGCGTGTGTGCATTCATAGGA 60.339 47.619 0.00 0.00 40.62 2.94
3775 3839 1.085893 TGCGTGTGTGCATTCATAGG 58.914 50.000 0.00 0.00 40.62 2.57
3784 3848 1.087771 GGTAGGGTATGCGTGTGTGC 61.088 60.000 0.00 0.00 0.00 4.57
3785 3849 0.461339 GGGTAGGGTATGCGTGTGTG 60.461 60.000 0.00 0.00 0.00 3.82
3786 3850 0.616679 AGGGTAGGGTATGCGTGTGT 60.617 55.000 0.00 0.00 0.00 3.72
3787 3851 0.539986 AAGGGTAGGGTATGCGTGTG 59.460 55.000 0.00 0.00 0.00 3.82
3788 3852 2.163810 TAAGGGTAGGGTATGCGTGT 57.836 50.000 0.00 0.00 0.00 4.49
3789 3853 2.631062 TCATAAGGGTAGGGTATGCGTG 59.369 50.000 0.00 0.00 0.00 5.34
3790 3854 2.897969 CTCATAAGGGTAGGGTATGCGT 59.102 50.000 0.00 0.00 0.00 5.24
3791 3855 2.353803 GCTCATAAGGGTAGGGTATGCG 60.354 54.545 0.00 0.00 0.00 4.73
3792 3856 2.637872 TGCTCATAAGGGTAGGGTATGC 59.362 50.000 0.00 0.00 0.00 3.14
3793 3857 3.008049 GGTGCTCATAAGGGTAGGGTATG 59.992 52.174 0.00 0.00 0.00 2.39
3794 3858 3.116317 AGGTGCTCATAAGGGTAGGGTAT 60.116 47.826 0.00 0.00 0.00 2.73
3795 3859 2.249214 AGGTGCTCATAAGGGTAGGGTA 59.751 50.000 0.00 0.00 0.00 3.69
3796 3860 1.009675 AGGTGCTCATAAGGGTAGGGT 59.990 52.381 0.00 0.00 0.00 4.34
3797 3861 1.694696 GAGGTGCTCATAAGGGTAGGG 59.305 57.143 0.00 0.00 0.00 3.53
3798 3862 1.694696 GGAGGTGCTCATAAGGGTAGG 59.305 57.143 0.00 0.00 31.08 3.18
3799 3863 1.341531 CGGAGGTGCTCATAAGGGTAG 59.658 57.143 0.00 0.00 31.08 3.18
3800 3864 1.063492 TCGGAGGTGCTCATAAGGGTA 60.063 52.381 0.00 0.00 31.08 3.69
3801 3865 0.325296 TCGGAGGTGCTCATAAGGGT 60.325 55.000 0.00 0.00 31.08 4.34
3802 3866 0.390860 CTCGGAGGTGCTCATAAGGG 59.609 60.000 0.00 0.00 31.08 3.95
3803 3867 1.339610 CTCTCGGAGGTGCTCATAAGG 59.660 57.143 4.96 0.00 31.08 2.69
3804 3868 2.034053 GTCTCTCGGAGGTGCTCATAAG 59.966 54.545 4.96 0.00 31.08 1.73
3805 3869 2.025155 GTCTCTCGGAGGTGCTCATAA 58.975 52.381 4.96 0.00 31.08 1.90
3806 3870 1.213182 AGTCTCTCGGAGGTGCTCATA 59.787 52.381 4.96 0.00 31.08 2.15
3807 3871 0.033601 AGTCTCTCGGAGGTGCTCAT 60.034 55.000 4.96 0.00 31.08 2.90
3808 3872 0.962855 CAGTCTCTCGGAGGTGCTCA 60.963 60.000 4.96 0.00 31.08 4.26
3809 3873 0.678366 TCAGTCTCTCGGAGGTGCTC 60.678 60.000 4.96 0.00 0.00 4.26
3810 3874 0.679640 CTCAGTCTCTCGGAGGTGCT 60.680 60.000 4.96 0.00 35.32 4.40
3811 3875 0.963355 ACTCAGTCTCTCGGAGGTGC 60.963 60.000 4.96 0.00 41.46 5.01
3812 3876 1.201181 CAACTCAGTCTCTCGGAGGTG 59.799 57.143 4.96 0.00 45.97 4.00
3813 3877 1.074084 TCAACTCAGTCTCTCGGAGGT 59.926 52.381 4.96 0.00 41.46 3.85
3814 3878 1.470890 GTCAACTCAGTCTCTCGGAGG 59.529 57.143 4.96 0.00 41.46 4.30
3815 3879 2.155279 TGTCAACTCAGTCTCTCGGAG 58.845 52.381 0.00 0.00 42.53 4.63
3816 3880 2.271944 TGTCAACTCAGTCTCTCGGA 57.728 50.000 0.00 0.00 0.00 4.55
3817 3881 4.336713 TGATATGTCAACTCAGTCTCTCGG 59.663 45.833 0.00 0.00 0.00 4.63
3818 3882 5.491635 TGATATGTCAACTCAGTCTCTCG 57.508 43.478 0.00 0.00 0.00 4.04
3819 3883 7.167302 CGAAATGATATGTCAACTCAGTCTCTC 59.833 40.741 0.00 0.00 38.01 3.20
3820 3884 6.977502 CGAAATGATATGTCAACTCAGTCTCT 59.022 38.462 0.00 0.00 38.01 3.10
3821 3885 6.975197 TCGAAATGATATGTCAACTCAGTCTC 59.025 38.462 0.00 0.00 38.01 3.36
3822 3886 6.867550 TCGAAATGATATGTCAACTCAGTCT 58.132 36.000 0.00 0.00 38.01 3.24
3823 3887 6.975197 TCTCGAAATGATATGTCAACTCAGTC 59.025 38.462 0.00 0.00 38.01 3.51
3824 3888 6.867550 TCTCGAAATGATATGTCAACTCAGT 58.132 36.000 0.00 0.00 38.01 3.41
3825 3889 7.943413 ATCTCGAAATGATATGTCAACTCAG 57.057 36.000 0.00 0.00 38.01 3.35
3826 3890 8.722480 AAATCTCGAAATGATATGTCAACTCA 57.278 30.769 0.00 0.00 38.01 3.41
3828 3892 9.599866 TGTAAATCTCGAAATGATATGTCAACT 57.400 29.630 0.00 0.00 38.01 3.16
3836 3900 9.653287 AGTGACTTTGTAAATCTCGAAATGATA 57.347 29.630 0.00 0.00 0.00 2.15
3837 3901 8.446273 CAGTGACTTTGTAAATCTCGAAATGAT 58.554 33.333 0.00 0.00 0.00 2.45
3838 3902 7.441157 ACAGTGACTTTGTAAATCTCGAAATGA 59.559 33.333 0.00 0.00 0.00 2.57
3839 3903 7.576236 ACAGTGACTTTGTAAATCTCGAAATG 58.424 34.615 0.00 0.00 0.00 2.32
3840 3904 7.730364 ACAGTGACTTTGTAAATCTCGAAAT 57.270 32.000 0.00 0.00 0.00 2.17
3841 3905 7.384115 CCTACAGTGACTTTGTAAATCTCGAAA 59.616 37.037 0.00 0.00 31.17 3.46
3842 3906 6.866770 CCTACAGTGACTTTGTAAATCTCGAA 59.133 38.462 0.00 0.00 31.17 3.71
3843 3907 6.387465 CCTACAGTGACTTTGTAAATCTCGA 58.613 40.000 0.00 0.00 31.17 4.04
3844 3908 5.062308 GCCTACAGTGACTTTGTAAATCTCG 59.938 44.000 0.00 0.00 31.17 4.04
3845 3909 5.062308 CGCCTACAGTGACTTTGTAAATCTC 59.938 44.000 0.00 0.00 31.17 2.75
3846 3910 4.929808 CGCCTACAGTGACTTTGTAAATCT 59.070 41.667 0.00 0.00 31.17 2.40
3847 3911 4.689345 ACGCCTACAGTGACTTTGTAAATC 59.311 41.667 0.00 0.00 31.17 2.17
3848 3912 4.638304 ACGCCTACAGTGACTTTGTAAAT 58.362 39.130 0.00 0.00 31.17 1.40
3849 3913 4.053295 GACGCCTACAGTGACTTTGTAAA 58.947 43.478 0.00 0.00 31.17 2.01
3850 3914 3.319972 AGACGCCTACAGTGACTTTGTAA 59.680 43.478 0.00 0.00 31.17 2.41
3851 3915 2.889045 AGACGCCTACAGTGACTTTGTA 59.111 45.455 0.00 0.00 0.00 2.41
3852 3916 1.687123 AGACGCCTACAGTGACTTTGT 59.313 47.619 0.00 0.00 0.00 2.83
3853 3917 2.329379 GAGACGCCTACAGTGACTTTG 58.671 52.381 0.00 0.00 30.94 2.77
3854 3918 1.068472 CGAGACGCCTACAGTGACTTT 60.068 52.381 0.00 0.00 30.94 2.66
3855 3919 0.522180 CGAGACGCCTACAGTGACTT 59.478 55.000 0.00 0.00 30.94 3.01
3856 3920 0.605860 ACGAGACGCCTACAGTGACT 60.606 55.000 0.00 0.00 33.56 3.41
3857 3921 0.179194 GACGAGACGCCTACAGTGAC 60.179 60.000 0.00 0.00 0.00 3.67
3858 3922 1.632948 CGACGAGACGCCTACAGTGA 61.633 60.000 0.00 0.00 0.00 3.41
3859 3923 1.226046 CGACGAGACGCCTACAGTG 60.226 63.158 0.00 0.00 0.00 3.66
3860 3924 1.633852 GACGACGAGACGCCTACAGT 61.634 60.000 0.00 0.00 36.70 3.55
3861 3925 1.060622 GACGACGAGACGCCTACAG 59.939 63.158 0.00 0.00 36.70 2.74
3862 3926 2.733671 CGACGACGAGACGCCTACA 61.734 63.158 0.00 0.00 42.66 2.74
3863 3927 2.021106 CGACGACGAGACGCCTAC 59.979 66.667 0.00 0.00 42.66 3.18
3864 3928 2.125952 TCGACGACGAGACGCCTA 60.126 61.111 5.75 0.00 43.81 3.93
3880 3944 6.018669 CGCTTTTAGTAGGAGATGTTTCCATC 60.019 42.308 0.00 0.00 46.56 3.51
3881 3945 5.817816 CGCTTTTAGTAGGAGATGTTTCCAT 59.182 40.000 0.00 0.00 39.84 3.41
3882 3946 5.175859 CGCTTTTAGTAGGAGATGTTTCCA 58.824 41.667 0.00 0.00 39.84 3.53
3883 3947 4.034163 GCGCTTTTAGTAGGAGATGTTTCC 59.966 45.833 0.00 0.00 37.52 3.13
3884 3948 4.630069 TGCGCTTTTAGTAGGAGATGTTTC 59.370 41.667 9.73 0.00 0.00 2.78
3885 3949 4.575885 TGCGCTTTTAGTAGGAGATGTTT 58.424 39.130 9.73 0.00 0.00 2.83
3886 3950 4.202245 TGCGCTTTTAGTAGGAGATGTT 57.798 40.909 9.73 0.00 0.00 2.71
3887 3951 3.887621 TGCGCTTTTAGTAGGAGATGT 57.112 42.857 9.73 0.00 0.00 3.06
3888 3952 3.426859 CGATGCGCTTTTAGTAGGAGATG 59.573 47.826 9.73 0.00 0.00 2.90
3889 3953 3.643763 CGATGCGCTTTTAGTAGGAGAT 58.356 45.455 9.73 0.00 0.00 2.75
3890 3954 3.079960 CGATGCGCTTTTAGTAGGAGA 57.920 47.619 9.73 0.00 0.00 3.71
3904 3968 0.811219 TCAGGATTTCCAGCGATGCG 60.811 55.000 0.00 0.00 38.89 4.73
3905 3969 1.382522 TTCAGGATTTCCAGCGATGC 58.617 50.000 0.00 0.00 38.89 3.91
3906 3970 5.756195 TTATTTCAGGATTTCCAGCGATG 57.244 39.130 0.00 0.00 38.89 3.84
3907 3971 6.966534 ATTTATTTCAGGATTTCCAGCGAT 57.033 33.333 0.00 0.00 38.89 4.58
3908 3972 6.376864 TGAATTTATTTCAGGATTTCCAGCGA 59.623 34.615 0.00 0.00 39.44 4.93
3909 3973 6.563422 TGAATTTATTTCAGGATTTCCAGCG 58.437 36.000 0.00 0.00 39.44 5.18
3921 3985 9.236691 GCTCGCATTATTTCTGAATTTATTTCA 57.763 29.630 0.00 0.00 42.09 2.69
3922 3986 9.236691 TGCTCGCATTATTTCTGAATTTATTTC 57.763 29.630 0.00 0.00 34.72 2.17
3923 3987 9.754382 ATGCTCGCATTATTTCTGAATTTATTT 57.246 25.926 0.00 0.00 31.82 1.40
3924 3988 9.403110 GATGCTCGCATTATTTCTGAATTTATT 57.597 29.630 5.79 0.00 36.70 1.40
3925 3989 8.570488 TGATGCTCGCATTATTTCTGAATTTAT 58.430 29.630 5.79 0.00 36.70 1.40
3926 3990 7.929159 TGATGCTCGCATTATTTCTGAATTTA 58.071 30.769 5.79 0.00 36.70 1.40
3927 3991 6.798482 TGATGCTCGCATTATTTCTGAATTT 58.202 32.000 5.79 0.00 36.70 1.82
3928 3992 6.381481 TGATGCTCGCATTATTTCTGAATT 57.619 33.333 5.79 0.00 36.70 2.17
3929 3993 5.048921 CCTGATGCTCGCATTATTTCTGAAT 60.049 40.000 5.79 0.00 36.70 2.57
3930 3994 4.274214 CCTGATGCTCGCATTATTTCTGAA 59.726 41.667 5.79 0.00 36.70 3.02
3931 3995 3.811497 CCTGATGCTCGCATTATTTCTGA 59.189 43.478 5.79 0.00 36.70 3.27
3932 3996 3.811497 TCCTGATGCTCGCATTATTTCTG 59.189 43.478 5.79 0.00 36.70 3.02
3933 3997 4.077300 TCCTGATGCTCGCATTATTTCT 57.923 40.909 5.79 0.00 36.70 2.52
3934 3998 5.368256 AATCCTGATGCTCGCATTATTTC 57.632 39.130 5.79 0.00 36.70 2.17
3935 3999 5.300034 TCAAATCCTGATGCTCGCATTATTT 59.700 36.000 5.79 7.47 36.70 1.40
3936 4000 4.823442 TCAAATCCTGATGCTCGCATTATT 59.177 37.500 5.79 2.29 36.70 1.40
3937 4001 4.214971 GTCAAATCCTGATGCTCGCATTAT 59.785 41.667 5.79 0.00 36.14 1.28
3938 4002 3.561310 GTCAAATCCTGATGCTCGCATTA 59.439 43.478 5.79 0.89 36.14 1.90
3939 4003 2.357009 GTCAAATCCTGATGCTCGCATT 59.643 45.455 5.79 0.00 36.14 3.56
3940 4004 1.945394 GTCAAATCCTGATGCTCGCAT 59.055 47.619 3.70 3.70 36.14 4.73
3941 4005 1.372582 GTCAAATCCTGATGCTCGCA 58.627 50.000 0.00 0.00 36.14 5.10
3942 4006 0.659957 GGTCAAATCCTGATGCTCGC 59.340 55.000 0.00 0.00 36.14 5.03
3943 4007 1.134280 AGGGTCAAATCCTGATGCTCG 60.134 52.381 0.00 0.00 36.14 5.03
3944 4008 2.725221 AGGGTCAAATCCTGATGCTC 57.275 50.000 0.00 0.00 36.14 4.26
3951 4015 2.240667 CAGTCCATCAGGGTCAAATCCT 59.759 50.000 0.00 0.00 38.11 3.24
3952 4016 2.239654 TCAGTCCATCAGGGTCAAATCC 59.760 50.000 0.00 0.00 38.11 3.01
3953 4017 3.539604 CTCAGTCCATCAGGGTCAAATC 58.460 50.000 0.00 0.00 38.11 2.17
3954 4018 2.240667 CCTCAGTCCATCAGGGTCAAAT 59.759 50.000 0.00 0.00 38.11 2.32
3955 4019 1.630369 CCTCAGTCCATCAGGGTCAAA 59.370 52.381 0.00 0.00 38.11 2.69
3956 4020 1.203300 TCCTCAGTCCATCAGGGTCAA 60.203 52.381 0.00 0.00 38.11 3.18
3957 4021 0.413434 TCCTCAGTCCATCAGGGTCA 59.587 55.000 0.00 0.00 38.11 4.02
3958 4022 1.799933 ATCCTCAGTCCATCAGGGTC 58.200 55.000 0.00 0.00 38.11 4.46
3959 4023 3.116590 TGATATCCTCAGTCCATCAGGGT 60.117 47.826 0.00 0.00 38.11 4.34
3960 4024 3.260380 GTGATATCCTCAGTCCATCAGGG 59.740 52.174 0.00 0.00 33.51 4.45
3961 4025 4.021280 CAGTGATATCCTCAGTCCATCAGG 60.021 50.000 0.00 0.00 35.23 3.86
3962 4026 4.588106 ACAGTGATATCCTCAGTCCATCAG 59.412 45.833 0.00 0.00 35.23 2.90
3963 4027 4.550669 ACAGTGATATCCTCAGTCCATCA 58.449 43.478 0.00 0.00 35.23 3.07
3964 4028 5.510520 GGAACAGTGATATCCTCAGTCCATC 60.511 48.000 0.00 0.00 35.23 3.51
3965 4029 4.346418 GGAACAGTGATATCCTCAGTCCAT 59.654 45.833 0.00 0.00 35.23 3.41
3966 4030 3.706594 GGAACAGTGATATCCTCAGTCCA 59.293 47.826 0.00 0.00 35.23 4.02
3967 4031 3.964031 AGGAACAGTGATATCCTCAGTCC 59.036 47.826 0.00 2.34 39.36 3.85
3973 4037 5.529289 TGGTTAGAGGAACAGTGATATCCT 58.471 41.667 14.05 14.05 46.14 3.24
3974 4038 5.871396 TGGTTAGAGGAACAGTGATATCC 57.129 43.478 0.00 1.51 40.09 2.59
3975 4039 7.500992 TGAATGGTTAGAGGAACAGTGATATC 58.499 38.462 0.00 0.00 40.09 1.63
3976 4040 7.437713 TGAATGGTTAGAGGAACAGTGATAT 57.562 36.000 0.00 0.00 40.09 1.63
3977 4041 6.867519 TGAATGGTTAGAGGAACAGTGATA 57.132 37.500 0.00 0.00 40.09 2.15
3978 4042 5.762179 TGAATGGTTAGAGGAACAGTGAT 57.238 39.130 0.00 0.00 40.09 3.06
3979 4043 5.305585 GTTGAATGGTTAGAGGAACAGTGA 58.694 41.667 0.00 0.00 40.09 3.41
3980 4044 4.455877 GGTTGAATGGTTAGAGGAACAGTG 59.544 45.833 0.00 0.00 40.09 3.66
3981 4045 4.104102 TGGTTGAATGGTTAGAGGAACAGT 59.896 41.667 0.00 0.00 40.09 3.55
3982 4046 4.455877 GTGGTTGAATGGTTAGAGGAACAG 59.544 45.833 0.00 0.00 40.09 3.16
3983 4047 4.141367 TGTGGTTGAATGGTTAGAGGAACA 60.141 41.667 0.00 0.00 40.09 3.18
3984 4048 4.394729 TGTGGTTGAATGGTTAGAGGAAC 58.605 43.478 0.00 0.00 37.31 3.62
3985 4049 4.506625 CCTGTGGTTGAATGGTTAGAGGAA 60.507 45.833 0.00 0.00 0.00 3.36
3986 4050 3.009033 CCTGTGGTTGAATGGTTAGAGGA 59.991 47.826 0.00 0.00 0.00 3.71
3987 4051 3.244911 ACCTGTGGTTGAATGGTTAGAGG 60.245 47.826 0.00 0.00 27.29 3.69
3988 4052 4.021102 ACCTGTGGTTGAATGGTTAGAG 57.979 45.455 0.00 0.00 27.29 2.43
3989 4053 4.447138 AACCTGTGGTTGAATGGTTAGA 57.553 40.909 0.71 0.00 45.07 2.10
4003 4067 2.093306 TCTATGCGAACCAACCTGTG 57.907 50.000 0.00 0.00 0.00 3.66
4004 4068 2.632377 CATCTATGCGAACCAACCTGT 58.368 47.619 0.00 0.00 0.00 4.00
4005 4069 1.331756 GCATCTATGCGAACCAACCTG 59.668 52.381 0.00 0.00 44.67 4.00
4006 4070 1.668419 GCATCTATGCGAACCAACCT 58.332 50.000 0.00 0.00 44.67 3.50
4028 4092 4.514585 TTTGTGGCCCGTGCAGGT 62.515 61.111 0.00 0.00 40.13 4.00
4029 4093 2.098426 AATTTTGTGGCCCGTGCAGG 62.098 55.000 0.00 0.00 40.13 4.85
4030 4094 0.600557 TAATTTTGTGGCCCGTGCAG 59.399 50.000 0.00 0.00 40.13 4.41
4031 4095 0.315568 GTAATTTTGTGGCCCGTGCA 59.684 50.000 0.00 0.00 40.13 4.57
4037 4101 4.244862 CTGGACATTGTAATTTTGTGGCC 58.755 43.478 0.00 0.00 38.49 5.36
4040 4108 5.752472 TGCAACTGGACATTGTAATTTTGTG 59.248 36.000 0.00 0.00 0.00 3.33
4079 4147 3.840890 AATTTTGTCGCGCCTAAATGA 57.159 38.095 10.07 0.00 0.00 2.57
4103 4222 8.165239 AGTGAAATATACTTGCAACTTGACAA 57.835 30.769 0.00 0.00 0.00 3.18
4108 4227 7.667043 TTCGAGTGAAATATACTTGCAACTT 57.333 32.000 0.00 0.00 31.04 2.66
4129 4248 3.516263 GCAGAAGCGCCTAAATTCG 57.484 52.632 2.29 0.00 0.00 3.34
4195 4314 9.249053 CTGACATGGATAACTCTACCATATACT 57.751 37.037 0.00 0.00 41.68 2.12
4196 4315 8.470805 CCTGACATGGATAACTCTACCATATAC 58.529 40.741 0.00 0.00 41.68 1.47
4197 4316 7.619698 CCCTGACATGGATAACTCTACCATATA 59.380 40.741 0.00 0.00 41.68 0.86
4198 4317 6.441924 CCCTGACATGGATAACTCTACCATAT 59.558 42.308 0.00 0.00 41.68 1.78
4199 4318 5.780282 CCCTGACATGGATAACTCTACCATA 59.220 44.000 0.00 0.00 41.68 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.