Multiple sequence alignment - TraesCS6A01G160200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G160200 chr6A 100.000 3147 0 0 1 3147 153519904 153523050 0.000000e+00 5812.0
1 TraesCS6A01G160200 chr6D 90.768 1159 73 16 252 1395 126617826 126616687 0.000000e+00 1517.0
2 TraesCS6A01G160200 chr6D 84.584 1226 61 36 1545 2702 126616623 126615458 0.000000e+00 1099.0
3 TraesCS6A01G160200 chr6B 94.286 805 42 1 569 1369 225312377 225311573 0.000000e+00 1229.0
4 TraesCS6A01G160200 chr6B 84.108 1183 68 44 1565 2689 225311470 225310350 0.000000e+00 1033.0
5 TraesCS6A01G160200 chr6B 86.895 496 31 17 23 489 225312991 225312501 2.780000e-145 525.0
6 TraesCS6A01G160200 chr6B 96.825 63 2 0 1428 1490 225311547 225311485 4.290000e-19 106.0
7 TraesCS6A01G160200 chr5A 96.479 284 10 0 2864 3147 611029592 611029875 1.320000e-128 470.0
8 TraesCS6A01G160200 chr5A 96.441 281 9 1 2867 3147 151067234 151066955 2.210000e-126 462.0
9 TraesCS6A01G160200 chr3A 96.127 284 11 0 2864 3147 140004283 140004566 6.150000e-127 464.0
10 TraesCS6A01G160200 chr4A 95.502 289 12 1 2860 3147 58522061 58521773 7.950000e-126 460.0
11 TraesCS6A01G160200 chr1A 95.789 285 12 0 2863 3147 2651305 2651589 7.950000e-126 460.0
12 TraesCS6A01G160200 chr7A 96.085 281 11 0 2867 3147 620420676 620420396 2.860000e-125 459.0
13 TraesCS6A01G160200 chr7A 91.525 59 5 0 2773 2831 564620795 564620853 7.230000e-12 82.4
14 TraesCS6A01G160200 chr4B 95.470 287 13 0 2861 3147 65620725 65621011 2.860000e-125 459.0
15 TraesCS6A01G160200 chr2A 95.470 287 13 0 2861 3147 597847812 597848098 2.860000e-125 459.0
16 TraesCS6A01G160200 chr3D 94.295 298 17 0 2850 3147 582119784 582120081 1.030000e-124 457.0
17 TraesCS6A01G160200 chr3D 82.734 139 13 2 2736 2863 501266241 501266103 2.570000e-21 113.0
18 TraesCS6A01G160200 chr3D 92.157 51 1 2 1497 1545 219238606 219238557 5.630000e-08 69.4
19 TraesCS6A01G160200 chr7D 89.394 132 14 0 2732 2863 78426609 78426478 1.940000e-37 167.0
20 TraesCS6A01G160200 chr2D 85.714 91 13 0 2773 2863 188895783 188895873 2.580000e-16 97.1
21 TraesCS6A01G160200 chr5D 87.324 71 9 0 2773 2843 521710525 521710455 7.230000e-12 82.4
22 TraesCS6A01G160200 chr3B 93.478 46 0 2 1497 1540 324258857 324258813 7.290000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G160200 chr6A 153519904 153523050 3146 False 5812.00 5812 100.0000 1 3147 1 chr6A.!!$F1 3146
1 TraesCS6A01G160200 chr6D 126615458 126617826 2368 True 1308.00 1517 87.6760 252 2702 2 chr6D.!!$R1 2450
2 TraesCS6A01G160200 chr6B 225310350 225312991 2641 True 723.25 1229 90.5285 23 2689 4 chr6B.!!$R1 2666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 887 0.096976 CATGCACGACCGGTCAAATC 59.903 55.0 32.80 18.53 0.0 2.17 F
1397 1523 0.322277 AGGTCTTGCATGCTGTCCTG 60.322 55.0 20.33 2.81 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1996 2143 0.030504 TGTTGAAGTTGTGGCGCATG 59.969 50.0 10.83 0.0 0.0 4.06 R
2777 2975 0.036388 GCCTGGTCGACTCAAATGGA 60.036 55.0 16.46 0.0 0.0 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.344237 GGTGAAGCATTGGGAGGG 57.656 61.111 0.00 0.00 0.00 4.30
18 19 1.380380 GGTGAAGCATTGGGAGGGG 60.380 63.158 0.00 0.00 0.00 4.79
19 20 1.691219 GTGAAGCATTGGGAGGGGA 59.309 57.895 0.00 0.00 0.00 4.81
20 21 0.681243 GTGAAGCATTGGGAGGGGAC 60.681 60.000 0.00 0.00 0.00 4.46
21 22 1.139498 TGAAGCATTGGGAGGGGACA 61.139 55.000 0.00 0.00 0.00 4.02
34 35 3.955551 GGAGGGGACAAAGTGTGTTTTTA 59.044 43.478 0.00 0.00 41.96 1.52
35 36 4.587262 GGAGGGGACAAAGTGTGTTTTTAT 59.413 41.667 0.00 0.00 41.96 1.40
36 37 5.771165 GGAGGGGACAAAGTGTGTTTTTATA 59.229 40.000 0.00 0.00 41.96 0.98
37 38 6.072119 GGAGGGGACAAAGTGTGTTTTTATAG 60.072 42.308 0.00 0.00 41.96 1.31
66 67 9.337396 GTTAATTATATCAATCTCACCACCACA 57.663 33.333 0.00 0.00 0.00 4.17
103 105 4.393680 TGAGATTTAATTTCGGGGTTGTCG 59.606 41.667 0.00 0.00 0.00 4.35
106 108 2.835580 TAATTTCGGGGTTGTCGACA 57.164 45.000 15.76 15.76 36.30 4.35
107 109 2.194201 AATTTCGGGGTTGTCGACAT 57.806 45.000 20.80 0.00 36.30 3.06
114 116 0.244450 GGGTTGTCGACATGTACCGA 59.756 55.000 24.53 1.11 0.00 4.69
125 127 4.675565 CGACATGTACCGATTGTATGAGAC 59.324 45.833 0.00 0.00 0.00 3.36
155 158 1.672737 GCAAGTTTTATGCCTGGCCAC 60.673 52.381 17.53 5.15 37.85 5.01
172 175 4.069304 GGCCACCGAGCAATATATTGTTA 58.931 43.478 23.14 0.00 39.88 2.41
174 177 5.878116 GGCCACCGAGCAATATATTGTTATA 59.122 40.000 23.14 0.00 39.88 0.98
176 179 7.409697 GCCACCGAGCAATATATTGTTATATG 58.590 38.462 23.14 16.40 39.88 1.78
177 180 7.279981 GCCACCGAGCAATATATTGTTATATGA 59.720 37.037 23.14 0.00 39.88 2.15
178 181 8.604035 CCACCGAGCAATATATTGTTATATGAC 58.396 37.037 23.14 7.19 39.88 3.06
179 182 9.150348 CACCGAGCAATATATTGTTATATGACA 57.850 33.333 23.14 0.00 39.88 3.58
180 183 9.719355 ACCGAGCAATATATTGTTATATGACAA 57.281 29.630 23.14 14.66 43.08 3.18
181 184 9.973246 CCGAGCAATATATTGTTATATGACAAC 57.027 33.333 23.14 1.74 41.86 3.32
200 227 6.160576 ACAACTTTCCTTGTGCATATTTGT 57.839 33.333 0.00 0.00 32.95 2.83
204 231 7.944729 ACTTTCCTTGTGCATATTTGTATCT 57.055 32.000 0.00 0.00 0.00 1.98
205 232 9.461312 AACTTTCCTTGTGCATATTTGTATCTA 57.539 29.630 0.00 0.00 0.00 1.98
216 243 9.435688 TGCATATTTGTATCTATATGTGTGACC 57.564 33.333 0.00 0.00 37.17 4.02
250 277 4.174009 CGTATATATTGGTTGGCGAGAGG 58.826 47.826 0.00 0.00 0.00 3.69
270 297 8.277713 CGAGAGGAAAGTTTTACGTATTTTCAA 58.722 33.333 16.90 0.35 31.19 2.69
300 327 1.557832 AGGAAAGTAAGCCGGTATGCA 59.442 47.619 1.90 0.00 0.00 3.96
389 417 3.303725 CGATCACCAAGCTTCGTCAAAAA 60.304 43.478 0.00 0.00 0.00 1.94
415 443 1.077285 TCCTCCACGGACGCATCTA 60.077 57.895 0.00 0.00 36.69 1.98
429 457 1.819288 GCATCTATTCCGATCCCGAGA 59.181 52.381 0.00 0.00 38.22 4.04
463 491 6.503589 TCGGATGAACGGTAAAATCAAATT 57.496 33.333 0.00 0.00 0.00 1.82
564 658 8.522178 TTTTATTTTATTTTACTGTGCACCCG 57.478 30.769 15.69 8.09 0.00 5.28
585 696 3.250762 CGAGCTCAGAACAACAATTTGGA 59.749 43.478 15.40 0.00 37.00 3.53
672 783 6.454223 AATTGTAGATGTGTATATGCCCCT 57.546 37.500 0.00 0.00 0.00 4.79
718 829 8.706656 GCTAGTTAGCTTTACTACATACGTAC 57.293 38.462 0.00 0.00 45.62 3.67
719 830 7.528850 GCTAGTTAGCTTTACTACATACGTACG 59.471 40.741 15.01 15.01 45.62 3.67
720 831 7.308782 AGTTAGCTTTACTACATACGTACGT 57.691 36.000 25.98 25.98 0.00 3.57
726 841 6.129872 GCTTTACTACATACGTACGTCATTCG 60.130 42.308 26.53 14.02 46.00 3.34
732 847 4.212847 ACATACGTACGTCATTCGAGCTAT 59.787 41.667 26.53 5.62 42.86 2.97
772 887 0.096976 CATGCACGACCGGTCAAATC 59.903 55.000 32.80 18.53 0.00 2.17
820 935 3.181510 GGCATACAAGGAACGATGACAAC 60.182 47.826 0.00 0.00 0.00 3.32
869 984 3.735208 GCGGTTTCTCGATCTTCTCATGA 60.735 47.826 0.00 0.00 0.00 3.07
1158 1284 1.941734 CAAGCCGAGCGTCGAGATC 60.942 63.158 0.00 0.00 43.74 2.75
1167 1293 2.722487 GTCGAGATCGGCGGTGAT 59.278 61.111 7.21 0.00 40.29 3.06
1251 1377 5.099575 CACTGTGGTTTGTTCAAGTTAACC 58.900 41.667 0.88 0.00 40.31 2.85
1252 1378 4.767928 ACTGTGGTTTGTTCAAGTTAACCA 59.232 37.500 0.88 3.51 45.64 3.67
1259 1385 9.132923 TGGTTTGTTCAAGTTAACCATGTAATA 57.867 29.630 0.88 0.00 43.65 0.98
1344 1470 5.339530 CCTTGAGGGAATATCTTCACTGGTT 60.340 44.000 0.00 0.00 45.32 3.67
1349 1475 6.444704 AGGGAATATCTTCACTGGTTAGAGA 58.555 40.000 0.00 0.00 43.64 3.10
1352 1478 7.506261 GGGAATATCTTCACTGGTTAGAGACTA 59.494 40.741 0.00 0.00 31.68 2.59
1355 1481 9.702253 AATATCTTCACTGGTTAGAGACTAAGA 57.298 33.333 0.00 0.00 0.00 2.10
1369 1495 5.103430 AGAGACTAAGAGCAACCCTACCTAT 60.103 44.000 0.00 0.00 0.00 2.57
1370 1496 6.102910 AGAGACTAAGAGCAACCCTACCTATA 59.897 42.308 0.00 0.00 0.00 1.31
1371 1497 6.308566 AGACTAAGAGCAACCCTACCTATAG 58.691 44.000 0.00 0.00 0.00 1.31
1372 1498 4.833938 ACTAAGAGCAACCCTACCTATAGC 59.166 45.833 0.00 0.00 0.00 2.97
1373 1499 3.621682 AGAGCAACCCTACCTATAGCT 57.378 47.619 0.00 0.00 0.00 3.32
1374 1500 3.930035 AGAGCAACCCTACCTATAGCTT 58.070 45.455 0.00 0.00 0.00 3.74
1375 1501 5.076057 AGAGCAACCCTACCTATAGCTTA 57.924 43.478 0.00 0.00 0.00 3.09
1376 1502 5.656420 AGAGCAACCCTACCTATAGCTTAT 58.344 41.667 0.00 0.00 0.00 1.73
1377 1503 6.085416 AGAGCAACCCTACCTATAGCTTATT 58.915 40.000 0.00 0.00 0.00 1.40
1378 1504 7.246763 AGAGCAACCCTACCTATAGCTTATTA 58.753 38.462 0.00 0.00 0.00 0.98
1379 1505 7.397761 AGAGCAACCCTACCTATAGCTTATTAG 59.602 40.741 0.00 0.00 0.00 1.73
1380 1506 6.440965 AGCAACCCTACCTATAGCTTATTAGG 59.559 42.308 12.95 12.95 35.87 2.69
1395 1521 2.113860 TTAGGTCTTGCATGCTGTCC 57.886 50.000 20.33 17.25 0.00 4.02
1396 1522 1.279496 TAGGTCTTGCATGCTGTCCT 58.721 50.000 20.33 22.49 0.00 3.85
1397 1523 0.322277 AGGTCTTGCATGCTGTCCTG 60.322 55.000 20.33 2.81 0.00 3.86
1398 1524 1.505353 GTCTTGCATGCTGTCCTGC 59.495 57.895 20.33 0.00 38.87 4.85
1399 1525 2.036571 TCTTGCATGCTGTCCTGCG 61.037 57.895 20.33 0.00 41.32 5.18
1400 1526 2.032376 TTGCATGCTGTCCTGCGA 59.968 55.556 20.33 0.00 41.32 5.10
1401 1527 1.978712 CTTGCATGCTGTCCTGCGAG 61.979 60.000 20.33 0.00 41.98 5.03
1402 1528 3.873883 GCATGCTGTCCTGCGAGC 61.874 66.667 11.37 0.00 35.36 5.03
1416 1542 4.250116 CTGCGAGCAGGAAATATACTCT 57.750 45.455 16.69 0.00 40.17 3.24
1417 1543 4.626042 CTGCGAGCAGGAAATATACTCTT 58.374 43.478 16.69 0.00 40.17 2.85
1418 1544 5.023533 TGCGAGCAGGAAATATACTCTTT 57.976 39.130 0.00 0.00 0.00 2.52
1419 1545 5.428253 TGCGAGCAGGAAATATACTCTTTT 58.572 37.500 0.00 0.00 0.00 2.27
1420 1546 5.880332 TGCGAGCAGGAAATATACTCTTTTT 59.120 36.000 0.00 0.00 0.00 1.94
1492 1618 5.441709 TGTATTGGTGCATGCATGATAAG 57.558 39.130 30.64 3.47 0.00 1.73
1493 1619 2.875087 TTGGTGCATGCATGATAAGC 57.125 45.000 30.64 21.75 0.00 3.09
1494 1620 2.061509 TGGTGCATGCATGATAAGCT 57.938 45.000 30.64 0.00 0.00 3.74
1495 1621 3.211718 TGGTGCATGCATGATAAGCTA 57.788 42.857 30.64 3.69 0.00 3.32
1496 1622 3.758425 TGGTGCATGCATGATAAGCTAT 58.242 40.909 30.64 0.00 0.00 2.97
1499 1625 5.355910 TGGTGCATGCATGATAAGCTATATG 59.644 40.000 30.64 0.23 0.00 1.78
1502 1628 7.132863 GTGCATGCATGATAAGCTATATGATG 58.867 38.462 30.64 0.00 0.00 3.07
1503 1629 6.143496 GCATGCATGATAAGCTATATGATGC 58.857 40.000 30.64 21.61 36.19 3.91
1504 1630 6.017026 GCATGCATGATAAGCTATATGATGCT 60.017 38.462 30.64 15.82 41.82 3.79
1506 1632 7.933215 TGCATGATAAGCTATATGATGCTTT 57.067 32.000 25.06 6.23 45.91 3.51
1507 1633 9.623000 ATGCATGATAAGCTATATGATGCTTTA 57.377 29.630 25.06 14.90 45.91 1.85
1508 1634 9.106070 TGCATGATAAGCTATATGATGCTTTAG 57.894 33.333 25.06 0.00 45.91 1.85
1509 1635 8.557864 GCATGATAAGCTATATGATGCTTTAGG 58.442 37.037 21.36 7.64 45.91 2.69
1510 1636 9.610705 CATGATAAGCTATATGATGCTTTAGGT 57.389 33.333 14.49 3.68 45.91 3.08
1511 1637 9.829507 ATGATAAGCTATATGATGCTTTAGGTC 57.170 33.333 14.49 10.10 45.91 3.85
1512 1638 7.976175 TGATAAGCTATATGATGCTTTAGGTCG 59.024 37.037 14.49 0.00 45.91 4.79
1513 1639 5.730296 AGCTATATGATGCTTTAGGTCGT 57.270 39.130 0.00 0.00 35.86 4.34
1514 1640 6.102897 AGCTATATGATGCTTTAGGTCGTT 57.897 37.500 0.00 0.00 35.86 3.85
1515 1641 7.228314 AGCTATATGATGCTTTAGGTCGTTA 57.772 36.000 0.00 0.00 35.86 3.18
1516 1642 7.316640 AGCTATATGATGCTTTAGGTCGTTAG 58.683 38.462 0.00 0.00 35.86 2.34
1517 1643 7.176865 AGCTATATGATGCTTTAGGTCGTTAGA 59.823 37.037 0.00 0.00 35.86 2.10
1518 1644 7.976734 GCTATATGATGCTTTAGGTCGTTAGAT 59.023 37.037 0.00 0.00 0.00 1.98
1522 1648 8.958119 ATGATGCTTTAGGTCGTTAGATAAAA 57.042 30.769 0.00 0.00 0.00 1.52
1523 1649 8.780846 TGATGCTTTAGGTCGTTAGATAAAAA 57.219 30.769 0.00 0.00 0.00 1.94
1590 1720 6.276847 TCATGTATCATGCACGTACATAACA 58.723 36.000 15.84 7.03 37.04 2.41
1603 1733 7.906010 GCACGTACATAACAACAAATATGCTTA 59.094 33.333 0.00 0.00 33.71 3.09
1619 1749 0.370273 CTTATGGCAAGCGTGTCGAC 59.630 55.000 9.11 9.11 29.15 4.20
1642 1772 9.010366 CGACGGACATGACATACTATAAATATG 57.990 37.037 0.00 3.23 36.32 1.78
1670 1801 8.737168 TGGATAATTTCAAGATAGGTTCACTG 57.263 34.615 0.00 0.00 0.00 3.66
1671 1802 8.328758 TGGATAATTTCAAGATAGGTTCACTGT 58.671 33.333 0.00 0.00 0.00 3.55
1672 1803 8.616076 GGATAATTTCAAGATAGGTTCACTGTG 58.384 37.037 0.17 0.17 0.00 3.66
1673 1804 9.383519 GATAATTTCAAGATAGGTTCACTGTGA 57.616 33.333 6.36 6.36 0.00 3.58
1674 1805 7.678947 AATTTCAAGATAGGTTCACTGTGAG 57.321 36.000 10.77 0.00 0.00 3.51
1675 1806 5.808366 TTCAAGATAGGTTCACTGTGAGT 57.192 39.130 10.77 2.94 0.00 3.41
1676 1807 6.911250 TTCAAGATAGGTTCACTGTGAGTA 57.089 37.500 10.77 5.04 0.00 2.59
1677 1808 6.268825 TCAAGATAGGTTCACTGTGAGTAC 57.731 41.667 10.77 7.30 0.00 2.73
1678 1809 5.773176 TCAAGATAGGTTCACTGTGAGTACA 59.227 40.000 10.77 0.00 35.08 2.90
1679 1810 6.437477 TCAAGATAGGTTCACTGTGAGTACAT 59.563 38.462 10.77 7.71 35.97 2.29
1680 1811 6.458232 AGATAGGTTCACTGTGAGTACATC 57.542 41.667 10.77 11.96 35.97 3.06
1681 1812 3.963428 AGGTTCACTGTGAGTACATCC 57.037 47.619 10.77 7.98 35.97 3.51
1682 1813 3.239449 AGGTTCACTGTGAGTACATCCA 58.761 45.455 10.77 0.00 35.97 3.41
1683 1814 3.840666 AGGTTCACTGTGAGTACATCCAT 59.159 43.478 10.77 0.00 35.97 3.41
1684 1815 4.287067 AGGTTCACTGTGAGTACATCCATT 59.713 41.667 10.77 0.00 35.97 3.16
1687 1818 6.016276 GGTTCACTGTGAGTACATCCATTTTT 60.016 38.462 10.77 0.00 35.97 1.94
1714 1845 8.568676 TTGTGAGTACAGCTAGATCTATATCC 57.431 38.462 2.11 0.00 38.23 2.59
1715 1846 7.690256 TGTGAGTACAGCTAGATCTATATCCA 58.310 38.462 2.11 0.00 30.52 3.41
1716 1847 8.164070 TGTGAGTACAGCTAGATCTATATCCAA 58.836 37.037 2.11 0.00 30.52 3.53
1717 1848 8.673711 GTGAGTACAGCTAGATCTATATCCAAG 58.326 40.741 2.11 0.00 31.98 3.61
1853 2000 3.771479 AGTACATGACTTGGCATCTCTGA 59.229 43.478 0.00 0.00 33.13 3.27
2022 2169 0.029300 CACAACTTCAACACCCGCAG 59.971 55.000 0.00 0.00 0.00 5.18
2122 2269 1.632965 GGAAGTTCACCGGGCCCTAT 61.633 60.000 22.43 4.09 0.00 2.57
2158 2328 5.703130 CCAGCAAATCTAATCCCTAGCTAAC 59.297 44.000 0.00 0.00 0.00 2.34
2159 2329 6.291377 CAGCAAATCTAATCCCTAGCTAACA 58.709 40.000 0.00 0.00 0.00 2.41
2215 2385 1.669049 ATGGGCATGGCAACGTCATG 61.669 55.000 22.06 10.51 46.93 3.07
2244 2415 6.765036 CACATGAGAATAAGACTGGCTACAAT 59.235 38.462 0.00 0.00 0.00 2.71
2249 2420 6.281405 AGAATAAGACTGGCTACAATTACCG 58.719 40.000 0.00 0.00 0.00 4.02
2310 2492 1.977009 CTTCCAAAAGACCCCGGCC 60.977 63.158 0.00 0.00 34.14 6.13
2321 2503 1.378762 CCCCGGCCGGATGAATAAT 59.621 57.895 45.44 0.00 37.50 1.28
2323 2505 1.677820 CCCCGGCCGGATGAATAATAC 60.678 57.143 45.44 0.00 37.50 1.89
2324 2506 1.278127 CCCGGCCGGATGAATAATACT 59.722 52.381 45.44 0.00 37.50 2.12
2325 2507 2.498481 CCCGGCCGGATGAATAATACTA 59.502 50.000 45.44 0.00 37.50 1.82
2326 2508 3.430374 CCCGGCCGGATGAATAATACTAG 60.430 52.174 45.44 19.28 37.50 2.57
2327 2509 3.194968 CCGGCCGGATGAATAATACTAGT 59.805 47.826 41.82 0.00 37.50 2.57
2343 2525 4.961435 ACTAGTGTACGTAGCTTCTTCC 57.039 45.455 0.00 0.00 0.00 3.46
2346 2528 3.163467 AGTGTACGTAGCTTCTTCCCTT 58.837 45.455 0.00 0.00 0.00 3.95
2350 2532 4.753107 TGTACGTAGCTTCTTCCCTTTTTG 59.247 41.667 0.00 0.00 0.00 2.44
2351 2533 3.146847 ACGTAGCTTCTTCCCTTTTTGG 58.853 45.455 0.00 0.00 0.00 3.28
2362 2544 2.900716 CCTTTTTGGGCGGAGAAAAA 57.099 45.000 0.00 0.00 31.81 1.94
2363 2545 2.754472 CCTTTTTGGGCGGAGAAAAAG 58.246 47.619 0.00 0.00 43.89 2.27
2364 2546 2.135139 CTTTTTGGGCGGAGAAAAAGC 58.865 47.619 0.00 0.00 40.44 3.51
2365 2547 1.115467 TTTTGGGCGGAGAAAAAGCA 58.885 45.000 0.00 0.00 0.00 3.91
2366 2548 0.387565 TTTGGGCGGAGAAAAAGCAC 59.612 50.000 0.00 0.00 34.36 4.40
2367 2549 0.753479 TTGGGCGGAGAAAAAGCACA 60.753 50.000 0.00 0.00 43.17 4.57
2403 2601 4.996062 TGTTGCATCATATATGTGCTCG 57.004 40.909 26.31 11.05 36.48 5.03
2468 2666 8.596271 TCTATATACTCTCAAGACTCGACAAG 57.404 38.462 0.00 0.00 0.00 3.16
2469 2667 4.974368 ATACTCTCAAGACTCGACAAGG 57.026 45.455 0.00 0.00 0.00 3.61
2475 2673 3.914312 TCAAGACTCGACAAGGTGATTC 58.086 45.455 0.00 0.00 0.00 2.52
2477 2675 3.584406 AGACTCGACAAGGTGATTCTG 57.416 47.619 0.00 0.00 0.00 3.02
2480 2678 2.628178 ACTCGACAAGGTGATTCTGACA 59.372 45.455 0.00 0.00 0.00 3.58
2490 2688 7.285401 ACAAGGTGATTCTGACAAGTTGTTATT 59.715 33.333 10.45 0.00 0.00 1.40
2491 2689 7.440523 AGGTGATTCTGACAAGTTGTTATTC 57.559 36.000 10.45 4.59 0.00 1.75
2492 2690 6.431234 AGGTGATTCTGACAAGTTGTTATTCC 59.569 38.462 10.45 5.64 0.00 3.01
2493 2691 6.431234 GGTGATTCTGACAAGTTGTTATTCCT 59.569 38.462 10.45 0.00 0.00 3.36
2494 2692 7.301054 GTGATTCTGACAAGTTGTTATTCCTG 58.699 38.462 10.45 1.40 0.00 3.86
2495 2693 6.430925 TGATTCTGACAAGTTGTTATTCCTGG 59.569 38.462 10.45 0.00 0.00 4.45
2496 2694 5.304686 TCTGACAAGTTGTTATTCCTGGT 57.695 39.130 10.45 0.00 0.00 4.00
2497 2695 5.305585 TCTGACAAGTTGTTATTCCTGGTC 58.694 41.667 10.45 0.00 31.12 4.02
2554 2752 2.642700 CCTTTGTTTGGTCGGCGG 59.357 61.111 7.21 0.00 0.00 6.13
2555 2753 2.190841 CCTTTGTTTGGTCGGCGGT 61.191 57.895 7.21 0.00 0.00 5.68
2556 2754 1.008995 CTTTGTTTGGTCGGCGGTG 60.009 57.895 7.21 0.00 0.00 4.94
2557 2755 1.440938 CTTTGTTTGGTCGGCGGTGA 61.441 55.000 7.21 0.00 0.00 4.02
2558 2756 0.820074 TTTGTTTGGTCGGCGGTGAT 60.820 50.000 7.21 0.00 0.00 3.06
2559 2757 0.820074 TTGTTTGGTCGGCGGTGATT 60.820 50.000 7.21 0.00 0.00 2.57
2560 2758 0.820074 TGTTTGGTCGGCGGTGATTT 60.820 50.000 7.21 0.00 0.00 2.17
2561 2759 0.312729 GTTTGGTCGGCGGTGATTTT 59.687 50.000 7.21 0.00 0.00 1.82
2562 2760 1.536331 GTTTGGTCGGCGGTGATTTTA 59.464 47.619 7.21 0.00 0.00 1.52
2563 2761 1.893544 TTGGTCGGCGGTGATTTTAA 58.106 45.000 7.21 0.00 0.00 1.52
2564 2762 2.116827 TGGTCGGCGGTGATTTTAAT 57.883 45.000 7.21 0.00 0.00 1.40
2565 2763 2.438411 TGGTCGGCGGTGATTTTAATT 58.562 42.857 7.21 0.00 0.00 1.40
2566 2764 2.820787 TGGTCGGCGGTGATTTTAATTT 59.179 40.909 7.21 0.00 0.00 1.82
2567 2765 3.175929 GGTCGGCGGTGATTTTAATTTG 58.824 45.455 7.21 0.00 0.00 2.32
2568 2766 3.119779 GGTCGGCGGTGATTTTAATTTGA 60.120 43.478 7.21 0.00 0.00 2.69
2569 2767 4.439563 GGTCGGCGGTGATTTTAATTTGAT 60.440 41.667 7.21 0.00 0.00 2.57
2570 2768 5.099575 GTCGGCGGTGATTTTAATTTGATT 58.900 37.500 7.21 0.00 0.00 2.57
2571 2769 5.004345 GTCGGCGGTGATTTTAATTTGATTG 59.996 40.000 7.21 0.00 0.00 2.67
2572 2770 4.259770 CGGCGGTGATTTTAATTTGATTGC 60.260 41.667 0.00 0.00 0.00 3.56
2573 2771 4.869861 GGCGGTGATTTTAATTTGATTGCT 59.130 37.500 0.00 0.00 0.00 3.91
2574 2772 6.039616 GGCGGTGATTTTAATTTGATTGCTA 58.960 36.000 0.00 0.00 0.00 3.49
2575 2773 6.198966 GGCGGTGATTTTAATTTGATTGCTAG 59.801 38.462 0.00 0.00 0.00 3.42
2576 2774 6.291796 GCGGTGATTTTAATTTGATTGCTAGC 60.292 38.462 8.10 8.10 0.00 3.42
2577 2775 6.075415 CGGTGATTTTAATTTGATTGCTAGCG 60.075 38.462 10.77 0.00 0.00 4.26
2675 2873 4.040047 TCAAGGACATGTATCTCCATGGT 58.960 43.478 12.58 0.00 45.21 3.55
2686 2884 2.531672 TCCATGGTCGGAGATGCAT 58.468 52.632 12.58 0.00 40.67 3.96
2692 2890 1.271871 TGGTCGGAGATGCATTTGGTT 60.272 47.619 0.00 0.00 40.67 3.67
2694 2892 2.083774 GTCGGAGATGCATTTGGTTCA 58.916 47.619 0.00 0.00 40.67 3.18
2709 2907 4.112634 TGGTTCAATAAGCAAGGAAGGT 57.887 40.909 0.00 0.00 40.03 3.50
2710 2908 4.079253 TGGTTCAATAAGCAAGGAAGGTC 58.921 43.478 0.00 0.00 40.03 3.85
2711 2909 3.127030 GGTTCAATAAGCAAGGAAGGTCG 59.873 47.826 0.00 0.00 33.20 4.79
2712 2910 3.973206 TCAATAAGCAAGGAAGGTCGA 57.027 42.857 0.00 0.00 0.00 4.20
2713 2911 4.487714 TCAATAAGCAAGGAAGGTCGAT 57.512 40.909 0.00 0.00 0.00 3.59
2714 2912 5.607939 TCAATAAGCAAGGAAGGTCGATA 57.392 39.130 0.00 0.00 0.00 2.92
2715 2913 5.357257 TCAATAAGCAAGGAAGGTCGATAC 58.643 41.667 0.00 0.00 0.00 2.24
2716 2914 2.295253 AAGCAAGGAAGGTCGATACG 57.705 50.000 0.00 0.00 0.00 3.06
2717 2915 0.179108 AGCAAGGAAGGTCGATACGC 60.179 55.000 0.00 0.00 0.00 4.42
2718 2916 0.179108 GCAAGGAAGGTCGATACGCT 60.179 55.000 0.00 0.00 0.00 5.07
2719 2917 1.560923 CAAGGAAGGTCGATACGCTG 58.439 55.000 0.00 0.00 0.00 5.18
2720 2918 1.135083 CAAGGAAGGTCGATACGCTGT 60.135 52.381 0.00 0.00 0.00 4.40
2721 2919 1.183549 AGGAAGGTCGATACGCTGTT 58.816 50.000 0.00 0.00 0.00 3.16
2722 2920 1.135083 AGGAAGGTCGATACGCTGTTG 60.135 52.381 0.00 0.00 0.00 3.33
2723 2921 1.403780 GGAAGGTCGATACGCTGTTGT 60.404 52.381 0.00 0.00 0.00 3.32
2724 2922 2.334838 GAAGGTCGATACGCTGTTGTT 58.665 47.619 0.00 0.00 0.00 2.83
2725 2923 2.450609 AGGTCGATACGCTGTTGTTT 57.549 45.000 0.00 0.00 0.00 2.83
2726 2924 2.762745 AGGTCGATACGCTGTTGTTTT 58.237 42.857 0.00 0.00 0.00 2.43
2727 2925 3.916761 AGGTCGATACGCTGTTGTTTTA 58.083 40.909 0.00 0.00 0.00 1.52
2728 2926 4.309099 AGGTCGATACGCTGTTGTTTTAA 58.691 39.130 0.00 0.00 0.00 1.52
2729 2927 4.387862 AGGTCGATACGCTGTTGTTTTAAG 59.612 41.667 0.00 0.00 0.00 1.85
2730 2928 4.079710 GTCGATACGCTGTTGTTTTAAGC 58.920 43.478 0.00 0.00 0.00 3.09
2739 2937 4.788609 GCTGTTGTTTTAAGCGATAAGAGC 59.211 41.667 0.00 0.00 0.00 4.09
2740 2938 5.616866 GCTGTTGTTTTAAGCGATAAGAGCA 60.617 40.000 0.00 0.00 35.36 4.26
2741 2939 6.307031 TGTTGTTTTAAGCGATAAGAGCAA 57.693 33.333 0.00 0.00 37.01 3.91
2742 2940 6.140110 TGTTGTTTTAAGCGATAAGAGCAAC 58.860 36.000 0.00 0.00 37.01 4.17
2743 2941 6.017440 TGTTGTTTTAAGCGATAAGAGCAACT 60.017 34.615 17.74 0.00 33.00 3.16
2744 2942 6.165659 TGTTTTAAGCGATAAGAGCAACTC 57.834 37.500 0.00 0.00 37.01 3.01
2745 2943 5.121768 TGTTTTAAGCGATAAGAGCAACTCC 59.878 40.000 0.00 0.00 37.01 3.85
2746 2944 4.465632 TTAAGCGATAAGAGCAACTCCA 57.534 40.909 0.00 0.00 37.01 3.86
2747 2945 3.334583 AAGCGATAAGAGCAACTCCAA 57.665 42.857 0.00 0.00 37.01 3.53
2748 2946 2.622436 AGCGATAAGAGCAACTCCAAC 58.378 47.619 0.00 0.00 37.01 3.77
2749 2947 1.324736 GCGATAAGAGCAACTCCAACG 59.675 52.381 0.00 0.00 34.19 4.10
2750 2948 1.927174 CGATAAGAGCAACTCCAACGG 59.073 52.381 0.00 0.00 0.00 4.44
2751 2949 2.280628 GATAAGAGCAACTCCAACGGG 58.719 52.381 0.00 0.00 0.00 5.28
2752 2950 0.321298 TAAGAGCAACTCCAACGGGC 60.321 55.000 0.00 0.00 0.00 6.13
2753 2951 3.056328 GAGCAACTCCAACGGGCC 61.056 66.667 0.00 0.00 0.00 5.80
2756 2954 2.046314 CAACTCCAACGGGCCGAT 60.046 61.111 35.78 20.37 0.00 4.18
2757 2955 2.106683 CAACTCCAACGGGCCGATC 61.107 63.158 35.78 0.00 0.00 3.69
2758 2956 3.659089 AACTCCAACGGGCCGATCG 62.659 63.158 35.78 14.85 0.00 3.69
2759 2957 3.833645 CTCCAACGGGCCGATCGA 61.834 66.667 35.78 18.91 0.00 3.59
2760 2958 3.365291 CTCCAACGGGCCGATCGAA 62.365 63.158 35.78 12.55 0.00 3.71
2761 2959 2.435234 CCAACGGGCCGATCGAAA 60.435 61.111 35.78 0.00 0.00 3.46
2762 2960 2.746803 CCAACGGGCCGATCGAAAC 61.747 63.158 35.78 5.40 0.00 2.78
2763 2961 2.812178 AACGGGCCGATCGAAACG 60.812 61.111 35.78 18.69 0.00 3.60
2774 2972 3.161817 CGAAACGGTCGGCGATTT 58.838 55.556 14.79 10.07 46.45 2.17
2775 2973 1.494189 CGAAACGGTCGGCGATTTT 59.506 52.632 14.79 13.12 46.45 1.82
2776 2974 0.787908 CGAAACGGTCGGCGATTTTG 60.788 55.000 14.79 10.06 46.45 2.44
2777 2975 0.236449 GAAACGGTCGGCGATTTTGT 59.764 50.000 14.79 6.67 0.00 2.83
2778 2976 0.236449 AAACGGTCGGCGATTTTGTC 59.764 50.000 14.79 0.00 0.00 3.18
2779 2977 1.571215 AACGGTCGGCGATTTTGTCC 61.571 55.000 14.79 7.46 0.00 4.02
2780 2978 2.030401 CGGTCGGCGATTTTGTCCA 61.030 57.895 14.79 0.00 0.00 4.02
2781 2979 1.366111 CGGTCGGCGATTTTGTCCAT 61.366 55.000 14.79 0.00 0.00 3.41
2782 2980 0.808755 GGTCGGCGATTTTGTCCATT 59.191 50.000 14.79 0.00 0.00 3.16
2783 2981 1.201414 GGTCGGCGATTTTGTCCATTT 59.799 47.619 14.79 0.00 0.00 2.32
2784 2982 2.250188 GTCGGCGATTTTGTCCATTTG 58.750 47.619 14.79 0.00 0.00 2.32
2785 2983 2.095466 GTCGGCGATTTTGTCCATTTGA 60.095 45.455 14.79 0.00 0.00 2.69
2786 2984 2.161410 TCGGCGATTTTGTCCATTTGAG 59.839 45.455 4.99 0.00 0.00 3.02
2787 2985 2.095263 CGGCGATTTTGTCCATTTGAGT 60.095 45.455 0.00 0.00 0.00 3.41
2788 2986 3.501950 GGCGATTTTGTCCATTTGAGTC 58.498 45.455 0.00 0.00 0.00 3.36
2789 2987 3.163594 GCGATTTTGTCCATTTGAGTCG 58.836 45.455 0.00 0.00 0.00 4.18
2790 2988 3.120338 GCGATTTTGTCCATTTGAGTCGA 60.120 43.478 0.00 0.00 0.00 4.20
2791 2989 4.394795 CGATTTTGTCCATTTGAGTCGAC 58.605 43.478 7.70 7.70 0.00 4.20
2792 2990 4.669197 CGATTTTGTCCATTTGAGTCGACC 60.669 45.833 13.01 4.42 0.00 4.79
2793 2991 2.920724 TTGTCCATTTGAGTCGACCA 57.079 45.000 13.01 7.31 0.00 4.02
2794 2992 2.455674 TGTCCATTTGAGTCGACCAG 57.544 50.000 13.01 0.00 0.00 4.00
2795 2993 1.001974 TGTCCATTTGAGTCGACCAGG 59.998 52.381 13.01 8.00 0.00 4.45
2796 2994 0.036388 TCCATTTGAGTCGACCAGGC 60.036 55.000 13.01 0.00 0.00 4.85
2797 2995 1.361668 CCATTTGAGTCGACCAGGCG 61.362 60.000 13.01 0.00 0.00 5.52
2798 2996 1.079127 ATTTGAGTCGACCAGGCGG 60.079 57.895 13.01 0.00 38.77 6.13
2799 2997 1.541310 ATTTGAGTCGACCAGGCGGA 61.541 55.000 13.01 0.00 35.59 5.54
2800 2998 2.430382 TTTGAGTCGACCAGGCGGAC 62.430 60.000 13.01 2.79 35.59 4.79
2801 2999 3.371063 GAGTCGACCAGGCGGACA 61.371 66.667 13.01 0.00 35.59 4.02
2802 3000 3.628280 GAGTCGACCAGGCGGACAC 62.628 68.421 13.01 3.35 35.59 3.67
2806 3004 3.771160 GACCAGGCGGACACGGAT 61.771 66.667 2.43 0.00 41.36 4.18
2807 3005 4.082523 ACCAGGCGGACACGGATG 62.083 66.667 2.43 0.00 41.36 3.51
2808 3006 4.082523 CCAGGCGGACACGGATGT 62.083 66.667 0.00 0.00 43.71 3.06
2824 3022 4.228912 GGATGTCCGCTTTCATATTTGG 57.771 45.455 0.00 0.00 0.00 3.28
2825 3023 3.004734 GGATGTCCGCTTTCATATTTGGG 59.995 47.826 0.00 0.00 0.00 4.12
2826 3024 3.080300 TGTCCGCTTTCATATTTGGGT 57.920 42.857 0.00 0.00 0.00 4.51
2827 3025 3.013921 TGTCCGCTTTCATATTTGGGTC 58.986 45.455 0.00 0.00 0.00 4.46
2828 3026 2.031683 GTCCGCTTTCATATTTGGGTCG 59.968 50.000 0.00 0.00 0.00 4.79
2829 3027 1.333619 CCGCTTTCATATTTGGGTCGG 59.666 52.381 0.00 0.00 0.00 4.79
2830 3028 1.268539 CGCTTTCATATTTGGGTCGGC 60.269 52.381 0.00 0.00 0.00 5.54
2831 3029 1.268539 GCTTTCATATTTGGGTCGGCG 60.269 52.381 0.00 0.00 0.00 6.46
2832 3030 2.014128 CTTTCATATTTGGGTCGGCGT 58.986 47.619 6.85 0.00 0.00 5.68
2833 3031 1.374560 TTCATATTTGGGTCGGCGTG 58.625 50.000 6.85 0.00 0.00 5.34
2834 3032 0.250793 TCATATTTGGGTCGGCGTGT 59.749 50.000 6.85 0.00 0.00 4.49
2835 3033 0.376852 CATATTTGGGTCGGCGTGTG 59.623 55.000 6.85 0.00 0.00 3.82
2836 3034 1.373590 ATATTTGGGTCGGCGTGTGC 61.374 55.000 6.85 0.00 41.71 4.57
2847 3045 3.716006 CGTGTGCGCCCAAGACTG 61.716 66.667 4.18 0.00 0.00 3.51
2848 3046 3.357079 GTGTGCGCCCAAGACTGG 61.357 66.667 4.18 0.00 43.10 4.00
2854 3052 4.344865 GCCCAAGACTGGCCCGAA 62.345 66.667 0.00 0.00 43.33 4.30
2855 3053 2.359975 CCCAAGACTGGCCCGAAC 60.360 66.667 0.00 0.00 41.99 3.95
2856 3054 2.359975 CCAAGACTGGCCCGAACC 60.360 66.667 0.00 0.00 35.39 3.62
2857 3055 2.429930 CAAGACTGGCCCGAACCA 59.570 61.111 0.00 0.00 38.29 3.67
2858 3056 1.002134 CAAGACTGGCCCGAACCAT 60.002 57.895 0.00 0.00 39.54 3.55
2859 3057 0.609131 CAAGACTGGCCCGAACCATT 60.609 55.000 0.00 0.00 39.54 3.16
2860 3058 0.112412 AAGACTGGCCCGAACCATTT 59.888 50.000 0.00 0.00 39.54 2.32
2861 3059 0.112412 AGACTGGCCCGAACCATTTT 59.888 50.000 0.00 0.00 39.54 1.82
2862 3060 0.243636 GACTGGCCCGAACCATTTTG 59.756 55.000 0.00 0.00 39.54 2.44
2863 3061 1.184970 ACTGGCCCGAACCATTTTGG 61.185 55.000 0.00 0.00 45.02 3.28
2874 3072 4.687901 AACCATTTTGGGTCTCTTTTGG 57.312 40.909 0.00 0.00 43.37 3.28
2875 3073 3.653164 ACCATTTTGGGTCTCTTTTGGT 58.347 40.909 0.00 0.00 43.37 3.67
2876 3074 4.037222 ACCATTTTGGGTCTCTTTTGGTT 58.963 39.130 0.00 0.00 43.37 3.67
2877 3075 4.100963 ACCATTTTGGGTCTCTTTTGGTTC 59.899 41.667 0.00 0.00 43.37 3.62
2878 3076 4.100808 CCATTTTGGGTCTCTTTTGGTTCA 59.899 41.667 0.00 0.00 32.67 3.18
2879 3077 5.221702 CCATTTTGGGTCTCTTTTGGTTCAT 60.222 40.000 0.00 0.00 32.67 2.57
2880 3078 6.014669 CCATTTTGGGTCTCTTTTGGTTCATA 60.015 38.462 0.00 0.00 32.67 2.15
2881 3079 6.648879 TTTTGGGTCTCTTTTGGTTCATAG 57.351 37.500 0.00 0.00 0.00 2.23
2882 3080 4.301072 TGGGTCTCTTTTGGTTCATAGG 57.699 45.455 0.00 0.00 0.00 2.57
2883 3081 3.913799 TGGGTCTCTTTTGGTTCATAGGA 59.086 43.478 0.00 0.00 0.00 2.94
2884 3082 4.540099 TGGGTCTCTTTTGGTTCATAGGAT 59.460 41.667 0.00 0.00 0.00 3.24
2885 3083 5.729229 TGGGTCTCTTTTGGTTCATAGGATA 59.271 40.000 0.00 0.00 0.00 2.59
2886 3084 6.126768 TGGGTCTCTTTTGGTTCATAGGATAG 60.127 42.308 0.00 0.00 0.00 2.08
2887 3085 6.292150 GGTCTCTTTTGGTTCATAGGATAGG 58.708 44.000 0.00 0.00 0.00 2.57
2888 3086 6.099845 GGTCTCTTTTGGTTCATAGGATAGGA 59.900 42.308 0.00 0.00 0.00 2.94
2889 3087 7.202139 GGTCTCTTTTGGTTCATAGGATAGGAT 60.202 40.741 0.00 0.00 28.27 3.24
2890 3088 8.214364 GTCTCTTTTGGTTCATAGGATAGGATT 58.786 37.037 0.00 0.00 28.27 3.01
2891 3089 9.447279 TCTCTTTTGGTTCATAGGATAGGATTA 57.553 33.333 0.00 0.00 28.27 1.75
2894 3092 9.155975 CTTTTGGTTCATAGGATAGGATTATCG 57.844 37.037 0.00 0.00 37.20 2.92
2895 3093 7.792364 TTGGTTCATAGGATAGGATTATCGT 57.208 36.000 0.00 0.00 37.20 3.73
2896 3094 8.888836 TTGGTTCATAGGATAGGATTATCGTA 57.111 34.615 0.00 0.00 39.58 3.43
2897 3095 8.521170 TGGTTCATAGGATAGGATTATCGTAG 57.479 38.462 1.23 0.00 39.00 3.51
2898 3096 8.333984 TGGTTCATAGGATAGGATTATCGTAGA 58.666 37.037 1.23 0.00 39.00 2.59
2899 3097 9.186837 GGTTCATAGGATAGGATTATCGTAGAA 57.813 37.037 1.23 0.00 39.00 2.10
2970 3168 8.561738 TGAGTAGGAATAGGAAACAAAATGTC 57.438 34.615 0.00 0.00 0.00 3.06
2971 3169 8.160765 TGAGTAGGAATAGGAAACAAAATGTCA 58.839 33.333 0.00 0.00 0.00 3.58
2972 3170 9.178758 GAGTAGGAATAGGAAACAAAATGTCAT 57.821 33.333 0.00 0.00 0.00 3.06
2973 3171 9.533831 AGTAGGAATAGGAAACAAAATGTCATT 57.466 29.630 0.00 0.00 0.00 2.57
2976 3174 8.869109 AGGAATAGGAAACAAAATGTCATTTGA 58.131 29.630 11.54 0.00 41.73 2.69
2977 3175 9.657419 GGAATAGGAAACAAAATGTCATTTGAT 57.343 29.630 11.54 0.60 41.73 2.57
2981 3179 8.369218 AGGAAACAAAATGTCATTTGATTGAC 57.631 30.769 11.54 6.32 45.05 3.18
2990 3188 5.452078 GTCATTTGATTGACACCAAAGGA 57.548 39.130 10.82 10.82 44.38 3.36
2991 3189 5.841810 GTCATTTGATTGACACCAAAGGAA 58.158 37.500 14.50 2.50 42.24 3.36
2992 3190 6.458210 GTCATTTGATTGACACCAAAGGAAT 58.542 36.000 14.50 0.00 42.24 3.01
2993 3191 6.930722 GTCATTTGATTGACACCAAAGGAATT 59.069 34.615 14.50 0.00 42.24 2.17
2994 3192 7.442062 GTCATTTGATTGACACCAAAGGAATTT 59.558 33.333 14.50 0.00 42.24 1.82
2995 3193 7.992033 TCATTTGATTGACACCAAAGGAATTTT 59.008 29.630 11.90 0.00 39.22 1.82
2996 3194 8.623030 CATTTGATTGACACCAAAGGAATTTTT 58.377 29.630 7.86 0.00 36.51 1.94
2997 3195 7.784633 TTGATTGACACCAAAGGAATTTTTC 57.215 32.000 0.00 0.00 35.67 2.29
2998 3196 6.287525 TGATTGACACCAAAGGAATTTTTCC 58.712 36.000 0.00 0.00 41.06 3.13
2999 3197 6.126940 TGATTGACACCAAAGGAATTTTTCCA 60.127 34.615 8.87 0.00 42.19 3.53
3000 3198 6.840527 ATTGACACCAAAGGAATTTTTCCAT 58.159 32.000 8.87 0.00 42.19 3.41
3001 3199 7.289310 ATTGACACCAAAGGAATTTTTCCATT 58.711 30.769 8.87 0.31 42.19 3.16
3012 3210 6.765915 GAATTTTTCCATTGAGTCTAGGCT 57.234 37.500 0.00 0.00 0.00 4.58
3013 3211 6.765915 AATTTTTCCATTGAGTCTAGGCTC 57.234 37.500 17.74 17.74 36.12 4.70
3014 3212 4.908601 TTTTCCATTGAGTCTAGGCTCA 57.091 40.909 23.07 23.07 43.03 4.26
3015 3213 5.441718 TTTTCCATTGAGTCTAGGCTCAT 57.558 39.130 26.91 14.39 43.99 2.90
3016 3214 5.441718 TTTCCATTGAGTCTAGGCTCATT 57.558 39.130 26.91 20.33 43.99 2.57
3017 3215 5.441718 TTCCATTGAGTCTAGGCTCATTT 57.558 39.130 26.91 15.12 43.99 2.32
3018 3216 5.441718 TCCATTGAGTCTAGGCTCATTTT 57.558 39.130 26.91 12.69 43.99 1.82
3019 3217 5.819991 TCCATTGAGTCTAGGCTCATTTTT 58.180 37.500 26.91 10.30 43.99 1.94
3020 3218 6.957631 TCCATTGAGTCTAGGCTCATTTTTA 58.042 36.000 26.91 12.75 43.99 1.52
3021 3219 7.577303 TCCATTGAGTCTAGGCTCATTTTTAT 58.423 34.615 26.91 14.49 43.99 1.40
3022 3220 8.055181 TCCATTGAGTCTAGGCTCATTTTTATT 58.945 33.333 26.91 4.66 43.99 1.40
3023 3221 8.689972 CCATTGAGTCTAGGCTCATTTTTATTT 58.310 33.333 26.91 3.37 43.99 1.40
3026 3224 8.281212 TGAGTCTAGGCTCATTTTTATTTTCC 57.719 34.615 23.07 0.00 40.23 3.13
3027 3225 8.109634 TGAGTCTAGGCTCATTTTTATTTTCCT 58.890 33.333 23.07 0.00 40.23 3.36
3028 3226 9.614792 GAGTCTAGGCTCATTTTTATTTTCCTA 57.385 33.333 19.57 0.00 35.67 2.94
3046 3244 8.752005 TTTTCCTATGAAATGTGAAGGATAGG 57.248 34.615 0.00 0.00 40.08 2.57
3047 3245 7.690454 TTCCTATGAAATGTGAAGGATAGGA 57.310 36.000 0.00 0.00 39.66 2.94
3048 3246 7.690454 TCCTATGAAATGTGAAGGATAGGAA 57.310 36.000 0.00 0.00 38.86 3.36
3049 3247 7.509546 TCCTATGAAATGTGAAGGATAGGAAC 58.490 38.462 0.00 0.00 38.86 3.62
3050 3248 6.712547 CCTATGAAATGTGAAGGATAGGAACC 59.287 42.308 0.00 0.00 36.16 3.62
3051 3249 5.512942 TGAAATGTGAAGGATAGGAACCA 57.487 39.130 0.00 0.00 0.00 3.67
3052 3250 5.886609 TGAAATGTGAAGGATAGGAACCAA 58.113 37.500 0.00 0.00 0.00 3.67
3053 3251 6.493166 TGAAATGTGAAGGATAGGAACCAAT 58.507 36.000 0.00 0.00 0.00 3.16
3054 3252 6.603201 TGAAATGTGAAGGATAGGAACCAATC 59.397 38.462 0.00 0.00 0.00 2.67
3092 3290 6.396829 GAATCCATTCCTATGAACCAAAGG 57.603 41.667 0.00 0.00 33.37 3.11
3093 3291 4.249638 TCCATTCCTATGAACCAAAGGG 57.750 45.455 0.00 0.00 35.37 3.95
3094 3292 2.695147 CCATTCCTATGAACCAAAGGGC 59.305 50.000 0.00 0.00 33.50 5.19
3095 3293 3.628257 CCATTCCTATGAACCAAAGGGCT 60.628 47.826 0.00 0.00 33.50 5.19
3096 3294 3.825908 TTCCTATGAACCAAAGGGCTT 57.174 42.857 0.00 0.00 37.90 4.35
3097 3295 3.825908 TCCTATGAACCAAAGGGCTTT 57.174 42.857 0.00 0.00 37.90 3.51
3098 3296 4.938575 TCCTATGAACCAAAGGGCTTTA 57.061 40.909 0.00 0.00 37.90 1.85
3099 3297 5.263872 TCCTATGAACCAAAGGGCTTTAA 57.736 39.130 0.00 0.00 37.90 1.52
3100 3298 5.646215 TCCTATGAACCAAAGGGCTTTAAA 58.354 37.500 0.00 0.00 37.90 1.52
3101 3299 5.714806 TCCTATGAACCAAAGGGCTTTAAAG 59.285 40.000 11.02 11.02 37.90 1.85
3102 3300 4.890158 ATGAACCAAAGGGCTTTAAAGG 57.110 40.909 16.78 1.79 37.90 3.11
3103 3301 3.917300 TGAACCAAAGGGCTTTAAAGGA 58.083 40.909 16.78 0.00 37.90 3.36
3104 3302 4.290942 TGAACCAAAGGGCTTTAAAGGAA 58.709 39.130 16.78 0.00 37.90 3.36
3105 3303 4.717280 TGAACCAAAGGGCTTTAAAGGAAA 59.283 37.500 16.78 0.00 37.90 3.13
3106 3304 5.189934 TGAACCAAAGGGCTTTAAAGGAAAA 59.810 36.000 16.78 0.00 37.90 2.29
3107 3305 5.702065 ACCAAAGGGCTTTAAAGGAAAAA 57.298 34.783 16.78 0.00 37.90 1.94
3142 3340 9.713684 AGAATCCTATCCTCTAGAATTCCTATG 57.286 37.037 0.65 0.00 0.00 2.23
3143 3341 9.707957 GAATCCTATCCTCTAGAATTCCTATGA 57.292 37.037 0.65 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.380380 CCCCTCCCAATGCTTCACC 60.380 63.158 0.00 0.00 0.00 4.02
1 2 0.681243 GTCCCCTCCCAATGCTTCAC 60.681 60.000 0.00 0.00 0.00 3.18
2 3 1.139498 TGTCCCCTCCCAATGCTTCA 61.139 55.000 0.00 0.00 0.00 3.02
3 4 0.039618 TTGTCCCCTCCCAATGCTTC 59.960 55.000 0.00 0.00 0.00 3.86
4 5 0.486879 TTTGTCCCCTCCCAATGCTT 59.513 50.000 0.00 0.00 0.00 3.91
5 6 0.040204 CTTTGTCCCCTCCCAATGCT 59.960 55.000 0.00 0.00 0.00 3.79
6 7 0.251787 ACTTTGTCCCCTCCCAATGC 60.252 55.000 0.00 0.00 0.00 3.56
7 8 1.203050 ACACTTTGTCCCCTCCCAATG 60.203 52.381 0.00 0.00 0.00 2.82
8 9 1.158007 ACACTTTGTCCCCTCCCAAT 58.842 50.000 0.00 0.00 0.00 3.16
9 10 0.184933 CACACTTTGTCCCCTCCCAA 59.815 55.000 0.00 0.00 0.00 4.12
10 11 0.991355 ACACACTTTGTCCCCTCCCA 60.991 55.000 0.00 0.00 29.79 4.37
11 12 0.185175 AACACACTTTGTCCCCTCCC 59.815 55.000 0.00 0.00 37.51 4.30
12 13 2.067365 AAACACACTTTGTCCCCTCC 57.933 50.000 0.00 0.00 37.51 4.30
13 14 5.784578 ATAAAAACACACTTTGTCCCCTC 57.215 39.130 0.00 0.00 37.51 4.30
14 15 6.370453 ACTATAAAAACACACTTTGTCCCCT 58.630 36.000 0.00 0.00 37.51 4.79
15 16 6.644248 ACTATAAAAACACACTTTGTCCCC 57.356 37.500 0.00 0.00 37.51 4.81
16 17 8.387190 ACTACTATAAAAACACACTTTGTCCC 57.613 34.615 0.00 0.00 37.51 4.46
103 105 5.588240 TGTCTCATACAATCGGTACATGTC 58.412 41.667 0.00 0.00 34.29 3.06
125 127 7.413219 CCAGGCATAAAACTTGCACAAATATTG 60.413 37.037 0.00 0.00 41.95 1.90
134 137 0.607620 GGCCAGGCATAAAACTTGCA 59.392 50.000 15.19 0.00 41.95 4.08
155 158 9.973246 GTTGTCATATAACAATATATTGCTCGG 57.027 33.333 22.66 9.80 40.96 4.63
172 175 7.886629 ATATGCACAAGGAAAGTTGTCATAT 57.113 32.000 0.00 11.63 38.65 1.78
174 177 6.594788 AATATGCACAAGGAAAGTTGTCAT 57.405 33.333 0.00 0.00 38.65 3.06
176 179 6.215845 ACAAATATGCACAAGGAAAGTTGTC 58.784 36.000 0.00 0.00 38.65 3.18
177 180 6.160576 ACAAATATGCACAAGGAAAGTTGT 57.839 33.333 0.00 0.00 41.47 3.32
178 181 8.246180 AGATACAAATATGCACAAGGAAAGTTG 58.754 33.333 0.00 0.00 0.00 3.16
179 182 8.353423 AGATACAAATATGCACAAGGAAAGTT 57.647 30.769 0.00 0.00 0.00 2.66
180 183 7.944729 AGATACAAATATGCACAAGGAAAGT 57.055 32.000 0.00 0.00 0.00 2.66
229 256 5.401531 TCCTCTCGCCAACCAATATATAC 57.598 43.478 0.00 0.00 0.00 1.47
238 265 1.605753 AAACTTTCCTCTCGCCAACC 58.394 50.000 0.00 0.00 0.00 3.77
270 297 5.357032 CCGGCTTACTTTCCTCAACATTTAT 59.643 40.000 0.00 0.00 0.00 1.40
429 457 2.288091 CGTTCATCCGAGCTCAGATGAT 60.288 50.000 32.92 17.80 46.13 2.45
489 517 8.127954 GTGCCAAACATTGACACAAATATTTTT 58.872 29.630 0.00 0.00 42.63 1.94
490 518 7.638134 GTGCCAAACATTGACACAAATATTTT 58.362 30.769 0.00 0.00 42.63 1.82
491 519 7.188468 GTGCCAAACATTGACACAAATATTT 57.812 32.000 4.91 0.00 42.63 1.40
499 527 4.935885 TTTTTGTGCCAAACATTGACAC 57.064 36.364 3.03 3.03 43.28 3.67
558 652 1.301716 TTGTTCTGAGCTCGGGTGC 60.302 57.895 22.38 12.72 0.00 5.01
564 658 4.836125 TCCAAATTGTTGTTCTGAGCTC 57.164 40.909 6.82 6.82 32.40 4.09
585 696 6.826668 TGATATGATTAAACACGTGGAGGAT 58.173 36.000 21.57 8.42 0.00 3.24
600 711 7.967890 TGTGCGAGATTTGTATGATATGATT 57.032 32.000 0.00 0.00 0.00 2.57
601 712 7.967890 TTGTGCGAGATTTGTATGATATGAT 57.032 32.000 0.00 0.00 0.00 2.45
617 728 0.381801 GGGCCAACATATTGTGCGAG 59.618 55.000 4.39 0.00 34.58 5.03
672 783 6.519679 AGCATCTCTTTGCACAATTATTGA 57.480 33.333 12.28 0.00 45.23 2.57
717 828 5.244785 TGTCTTTATAGCTCGAATGACGT 57.755 39.130 15.79 0.00 43.13 4.34
718 829 5.387855 GCATGTCTTTATAGCTCGAATGACG 60.388 44.000 15.79 8.37 44.09 4.35
719 830 5.107298 GGCATGTCTTTATAGCTCGAATGAC 60.107 44.000 14.75 14.75 32.90 3.06
720 831 4.991056 GGCATGTCTTTATAGCTCGAATGA 59.009 41.667 0.00 0.00 0.00 2.57
726 841 4.342862 TCCAGGCATGTCTTTATAGCTC 57.657 45.455 0.00 0.00 0.00 4.09
732 847 3.282021 GCTGATTCCAGGCATGTCTTTA 58.718 45.455 0.00 0.00 40.72 1.85
772 887 7.169982 CCTTGATAGTAATTTTCGCTCCACTAG 59.830 40.741 0.00 0.00 0.00 2.57
820 935 1.306148 ATCACATGCAGCTCCAATCG 58.694 50.000 0.00 0.00 0.00 3.34
869 984 7.941431 AGGCGTCATATTTATAGTAGCTAGT 57.059 36.000 6.29 6.29 0.00 2.57
1158 1284 0.992072 CGCTAATATCATCACCGCCG 59.008 55.000 0.00 0.00 0.00 6.46
1251 1377 9.550811 GCATGTATCACATTCACATATTACATG 57.449 33.333 12.87 12.87 36.53 3.21
1252 1378 9.287373 TGCATGTATCACATTCACATATTACAT 57.713 29.630 0.00 0.00 36.53 2.29
1259 1385 4.529897 ACCTGCATGTATCACATTCACAT 58.470 39.130 0.00 0.00 36.53 3.21
1344 1470 4.230041 AGGTAGGGTTGCTCTTAGTCTCTA 59.770 45.833 0.00 0.00 0.00 2.43
1349 1475 4.833938 GCTATAGGTAGGGTTGCTCTTAGT 59.166 45.833 1.04 0.00 0.00 2.24
1352 1478 3.930035 AGCTATAGGTAGGGTTGCTCTT 58.070 45.455 1.70 0.00 0.00 2.85
1355 1481 6.440965 CCTAATAAGCTATAGGTAGGGTTGCT 59.559 42.308 4.57 0.00 0.00 3.91
1369 1495 5.059161 CAGCATGCAAGACCTAATAAGCTA 58.941 41.667 21.98 0.00 0.00 3.32
1370 1496 3.881688 CAGCATGCAAGACCTAATAAGCT 59.118 43.478 21.98 0.00 0.00 3.74
1371 1497 3.629398 ACAGCATGCAAGACCTAATAAGC 59.371 43.478 21.98 0.00 42.53 3.09
1372 1498 4.274459 GGACAGCATGCAAGACCTAATAAG 59.726 45.833 21.98 0.00 42.53 1.73
1373 1499 4.080356 AGGACAGCATGCAAGACCTAATAA 60.080 41.667 24.55 0.00 42.53 1.40
1374 1500 3.455910 AGGACAGCATGCAAGACCTAATA 59.544 43.478 24.55 0.00 42.53 0.98
1375 1501 2.240667 AGGACAGCATGCAAGACCTAAT 59.759 45.455 24.55 8.54 42.53 1.73
1376 1502 1.630369 AGGACAGCATGCAAGACCTAA 59.370 47.619 24.55 0.00 42.53 2.69
1377 1503 1.065926 CAGGACAGCATGCAAGACCTA 60.066 52.381 25.02 0.00 42.53 3.08
1378 1504 0.322277 CAGGACAGCATGCAAGACCT 60.322 55.000 21.98 21.88 42.53 3.85
1379 1505 2.177950 CAGGACAGCATGCAAGACC 58.822 57.895 21.98 20.05 42.53 3.85
1395 1521 4.250116 AGAGTATATTTCCTGCTCGCAG 57.750 45.455 11.83 11.83 43.26 5.18
1396 1522 4.672587 AAGAGTATATTTCCTGCTCGCA 57.327 40.909 0.00 0.00 0.00 5.10
1397 1523 5.993106 AAAAGAGTATATTTCCTGCTCGC 57.007 39.130 0.00 0.00 0.00 5.03
1421 1547 9.431887 GCATGTATAGAGTATATTTCCCGAAAA 57.568 33.333 0.00 0.00 33.56 2.29
1422 1548 8.590204 TGCATGTATAGAGTATATTTCCCGAAA 58.410 33.333 0.00 0.00 34.46 3.46
1423 1549 8.129496 TGCATGTATAGAGTATATTTCCCGAA 57.871 34.615 0.00 0.00 0.00 4.30
1424 1550 7.712204 TGCATGTATAGAGTATATTTCCCGA 57.288 36.000 0.00 0.00 0.00 5.14
1425 1551 8.197439 TGATGCATGTATAGAGTATATTTCCCG 58.803 37.037 2.46 0.00 0.00 5.14
1426 1552 9.319143 GTGATGCATGTATAGAGTATATTTCCC 57.681 37.037 2.46 0.00 0.00 3.97
1436 1562 6.529477 CCGTTAGATGTGATGCATGTATAGAG 59.471 42.308 2.46 0.00 38.06 2.43
1455 1581 6.312918 GCACCAATACATATATCCACCGTTAG 59.687 42.308 0.00 0.00 0.00 2.34
1492 1618 7.313646 TCTAACGACCTAAAGCATCATATAGC 58.686 38.462 0.00 0.00 0.00 2.97
1554 1680 8.781196 GTGCATGATACATGAGTGAAAGAATAT 58.219 33.333 14.65 0.00 0.00 1.28
1555 1681 7.042523 CGTGCATGATACATGAGTGAAAGAATA 60.043 37.037 14.65 0.00 0.00 1.75
1556 1682 6.238293 CGTGCATGATACATGAGTGAAAGAAT 60.238 38.462 14.65 0.00 0.00 2.40
1557 1683 5.063817 CGTGCATGATACATGAGTGAAAGAA 59.936 40.000 14.65 0.00 0.00 2.52
1558 1684 4.567959 CGTGCATGATACATGAGTGAAAGA 59.432 41.667 14.65 0.00 0.00 2.52
1559 1685 4.330894 ACGTGCATGATACATGAGTGAAAG 59.669 41.667 14.17 2.52 0.00 2.62
1560 1686 4.252878 ACGTGCATGATACATGAGTGAAA 58.747 39.130 14.17 0.00 0.00 2.69
1561 1687 3.860641 ACGTGCATGATACATGAGTGAA 58.139 40.909 14.17 0.00 0.00 3.18
1562 1688 3.525268 ACGTGCATGATACATGAGTGA 57.475 42.857 14.17 0.00 0.00 3.41
1563 1689 4.111916 TGTACGTGCATGATACATGAGTG 58.888 43.478 14.17 6.10 0.00 3.51
1571 1697 6.969828 TTGTTGTTATGTACGTGCATGATA 57.030 33.333 26.72 15.58 0.00 2.15
1603 1733 3.112075 CGTCGACACGCTTGCCAT 61.112 61.111 17.16 0.00 39.69 4.40
1644 1774 9.347240 CAGTGAACCTATCTTGAAATTATCCAT 57.653 33.333 0.00 0.00 0.00 3.41
1647 1777 9.383519 TCACAGTGAACCTATCTTGAAATTATC 57.616 33.333 0.00 0.00 0.00 1.75
1650 1780 7.227156 ACTCACAGTGAACCTATCTTGAAATT 58.773 34.615 4.41 0.00 0.00 1.82
1654 1785 5.773176 TGTACTCACAGTGAACCTATCTTGA 59.227 40.000 4.41 0.00 0.00 3.02
1655 1786 6.025749 TGTACTCACAGTGAACCTATCTTG 57.974 41.667 4.41 0.00 0.00 3.02
1656 1787 6.127310 GGATGTACTCACAGTGAACCTATCTT 60.127 42.308 4.41 0.00 38.30 2.40
1657 1788 5.361285 GGATGTACTCACAGTGAACCTATCT 59.639 44.000 4.41 0.00 38.30 1.98
1658 1789 5.127194 TGGATGTACTCACAGTGAACCTATC 59.873 44.000 4.41 6.80 38.30 2.08
1659 1790 5.023452 TGGATGTACTCACAGTGAACCTAT 58.977 41.667 4.41 0.00 38.30 2.57
1660 1791 4.412843 TGGATGTACTCACAGTGAACCTA 58.587 43.478 4.41 0.00 38.30 3.08
1661 1792 3.239449 TGGATGTACTCACAGTGAACCT 58.761 45.455 4.41 0.00 38.30 3.50
1662 1793 3.678056 TGGATGTACTCACAGTGAACC 57.322 47.619 4.41 2.83 38.30 3.62
1663 1794 6.560253 AAAATGGATGTACTCACAGTGAAC 57.440 37.500 4.41 1.43 38.30 3.18
1664 1795 8.862325 ATAAAAATGGATGTACTCACAGTGAA 57.138 30.769 4.41 0.00 38.30 3.18
1665 1796 8.729756 CAATAAAAATGGATGTACTCACAGTGA 58.270 33.333 2.48 2.48 38.30 3.41
1666 1797 8.514594 ACAATAAAAATGGATGTACTCACAGTG 58.485 33.333 0.00 0.00 38.30 3.66
1667 1798 8.514594 CACAATAAAAATGGATGTACTCACAGT 58.485 33.333 0.00 0.00 38.30 3.55
1668 1799 8.729756 TCACAATAAAAATGGATGTACTCACAG 58.270 33.333 0.00 0.00 38.30 3.66
1669 1800 8.628630 TCACAATAAAAATGGATGTACTCACA 57.371 30.769 0.00 0.00 39.52 3.58
1670 1801 8.730680 ACTCACAATAAAAATGGATGTACTCAC 58.269 33.333 0.00 0.00 0.00 3.51
1671 1802 8.862325 ACTCACAATAAAAATGGATGTACTCA 57.138 30.769 0.00 0.00 0.00 3.41
1673 1804 9.733556 TGTACTCACAATAAAAATGGATGTACT 57.266 29.630 0.00 0.00 0.00 2.73
1674 1805 9.988350 CTGTACTCACAATAAAAATGGATGTAC 57.012 33.333 0.00 0.00 33.22 2.90
1675 1806 8.673711 GCTGTACTCACAATAAAAATGGATGTA 58.326 33.333 0.00 0.00 33.22 2.29
1676 1807 7.394359 AGCTGTACTCACAATAAAAATGGATGT 59.606 33.333 0.00 0.00 33.22 3.06
1677 1808 7.765307 AGCTGTACTCACAATAAAAATGGATG 58.235 34.615 0.00 0.00 33.22 3.51
1678 1809 7.944729 AGCTGTACTCACAATAAAAATGGAT 57.055 32.000 0.00 0.00 33.22 3.41
1679 1810 8.318412 TCTAGCTGTACTCACAATAAAAATGGA 58.682 33.333 0.00 0.00 33.22 3.41
1680 1811 8.492673 TCTAGCTGTACTCACAATAAAAATGG 57.507 34.615 0.00 0.00 33.22 3.16
1707 1838 8.846423 ATAGTTAGTGGGGATCTTGGATATAG 57.154 38.462 0.00 0.00 0.00 1.31
1712 1843 3.895656 CGATAGTTAGTGGGGATCTTGGA 59.104 47.826 0.00 0.00 0.00 3.53
1713 1844 3.895656 TCGATAGTTAGTGGGGATCTTGG 59.104 47.826 0.00 0.00 37.40 3.61
1714 1845 4.262079 GGTCGATAGTTAGTGGGGATCTTG 60.262 50.000 0.00 0.00 37.40 3.02
1715 1846 3.896272 GGTCGATAGTTAGTGGGGATCTT 59.104 47.826 0.00 0.00 37.40 2.40
1716 1847 3.498334 GGTCGATAGTTAGTGGGGATCT 58.502 50.000 0.00 0.00 37.40 2.75
1717 1848 2.228343 CGGTCGATAGTTAGTGGGGATC 59.772 54.545 0.00 0.00 37.40 3.36
1722 1857 2.941064 TCAGTCGGTCGATAGTTAGTGG 59.059 50.000 0.00 0.00 37.40 4.00
1723 1858 4.815040 ATCAGTCGGTCGATAGTTAGTG 57.185 45.455 0.00 0.00 37.40 2.74
1853 2000 9.883142 TGAAGAAAAATTTACATCCAAACTGTT 57.117 25.926 0.00 0.00 0.00 3.16
1996 2143 0.030504 TGTTGAAGTTGTGGCGCATG 59.969 50.000 10.83 0.00 0.00 4.06
2130 2277 1.680338 GGATTAGATTTGCTGGCGGT 58.320 50.000 0.00 0.00 0.00 5.68
2158 2328 2.418628 CCCGTGTGTGGTAGCTATTTTG 59.581 50.000 0.00 0.00 0.00 2.44
2159 2329 2.303600 TCCCGTGTGTGGTAGCTATTTT 59.696 45.455 0.00 0.00 0.00 1.82
2168 2338 4.602259 CGTGCTCCCGTGTGTGGT 62.602 66.667 0.00 0.00 0.00 4.16
2215 2385 4.754114 GCCAGTCTTATTCTCATGTGATCC 59.246 45.833 0.00 0.00 0.00 3.36
2225 2395 6.281405 CGGTAATTGTAGCCAGTCTTATTCT 58.719 40.000 0.00 0.00 0.00 2.40
2227 2397 5.104652 ACCGGTAATTGTAGCCAGTCTTATT 60.105 40.000 4.49 0.00 0.00 1.40
2236 2407 5.876460 TCTTTTTCTACCGGTAATTGTAGCC 59.124 40.000 16.65 0.00 35.50 3.93
2244 2415 5.990120 AGCTAGTCTTTTTCTACCGGTAA 57.010 39.130 16.65 0.00 0.00 2.85
2288 2459 1.244816 CGGGGTCTTTTGGAAGGAAC 58.755 55.000 0.00 0.00 33.56 3.62
2292 2463 1.977009 GGCCGGGGTCTTTTGGAAG 60.977 63.158 2.18 0.00 0.00 3.46
2293 2464 2.116556 GGCCGGGGTCTTTTGGAA 59.883 61.111 2.18 0.00 0.00 3.53
2296 2467 3.638592 ATCCGGCCGGGGTCTTTTG 62.639 63.158 42.36 15.31 36.01 2.44
2297 2468 3.335729 ATCCGGCCGGGGTCTTTT 61.336 61.111 42.36 16.50 36.01 2.27
2298 2469 4.109675 CATCCGGCCGGGGTCTTT 62.110 66.667 42.36 18.27 36.01 2.52
2310 2492 7.691463 GCTACGTACACTAGTATTATTCATCCG 59.309 40.741 0.00 0.00 31.84 4.18
2321 2503 4.878397 GGGAAGAAGCTACGTACACTAGTA 59.122 45.833 0.00 0.00 0.00 1.82
2323 2505 3.946558 AGGGAAGAAGCTACGTACACTAG 59.053 47.826 0.00 0.00 0.00 2.57
2324 2506 3.960571 AGGGAAGAAGCTACGTACACTA 58.039 45.455 0.00 0.00 0.00 2.74
2325 2507 2.805194 AGGGAAGAAGCTACGTACACT 58.195 47.619 0.00 0.00 0.00 3.55
2326 2508 3.589495 AAGGGAAGAAGCTACGTACAC 57.411 47.619 0.00 0.00 0.00 2.90
2327 2509 4.612264 AAAAGGGAAGAAGCTACGTACA 57.388 40.909 0.00 0.00 0.00 2.90
2343 2525 2.754472 CTTTTTCTCCGCCCAAAAAGG 58.246 47.619 12.43 0.00 42.29 3.11
2346 2528 1.115467 TGCTTTTTCTCCGCCCAAAA 58.885 45.000 0.00 0.00 0.00 2.44
2350 2532 1.401905 CTATGTGCTTTTTCTCCGCCC 59.598 52.381 0.00 0.00 0.00 6.13
2351 2533 1.202188 GCTATGTGCTTTTTCTCCGCC 60.202 52.381 0.00 0.00 38.95 6.13
2352 2534 2.179949 GCTATGTGCTTTTTCTCCGC 57.820 50.000 0.00 0.00 38.95 5.54
2362 2544 5.287674 ACATCTATGTGAAGCTATGTGCT 57.712 39.130 0.00 0.00 46.95 4.40
2363 2545 5.745514 CAACATCTATGTGAAGCTATGTGC 58.254 41.667 0.00 0.00 41.61 4.57
2364 2546 5.295045 TGCAACATCTATGTGAAGCTATGTG 59.705 40.000 13.22 1.15 41.61 3.21
2365 2547 5.430886 TGCAACATCTATGTGAAGCTATGT 58.569 37.500 13.22 0.00 41.61 2.29
2366 2548 5.996669 TGCAACATCTATGTGAAGCTATG 57.003 39.130 13.22 0.00 41.61 2.23
2367 2549 6.293698 TGATGCAACATCTATGTGAAGCTAT 58.706 36.000 8.87 7.76 41.61 2.97
2468 2666 6.431234 AGGAATAACAACTTGTCAGAATCACC 59.569 38.462 0.00 0.00 0.00 4.02
2469 2667 7.301054 CAGGAATAACAACTTGTCAGAATCAC 58.699 38.462 0.00 0.00 0.00 3.06
2475 2673 5.308825 AGACCAGGAATAACAACTTGTCAG 58.691 41.667 0.00 0.00 31.46 3.51
2477 2675 4.695928 GGAGACCAGGAATAACAACTTGTC 59.304 45.833 0.00 0.00 0.00 3.18
2480 2678 4.263506 CCAGGAGACCAGGAATAACAACTT 60.264 45.833 0.00 0.00 0.00 2.66
2490 2688 1.577729 AGATCATCCAGGAGACCAGGA 59.422 52.381 4.50 4.50 39.12 3.86
2491 2689 1.969923 GAGATCATCCAGGAGACCAGG 59.030 57.143 0.00 0.00 0.00 4.45
2492 2690 2.675583 TGAGATCATCCAGGAGACCAG 58.324 52.381 0.00 0.00 0.00 4.00
2493 2691 2.854736 TGAGATCATCCAGGAGACCA 57.145 50.000 0.00 0.00 0.00 4.02
2494 2692 2.224257 GCTTGAGATCATCCAGGAGACC 60.224 54.545 0.00 0.00 0.00 3.85
2495 2693 2.433604 TGCTTGAGATCATCCAGGAGAC 59.566 50.000 0.00 0.00 0.00 3.36
2496 2694 2.755686 TGCTTGAGATCATCCAGGAGA 58.244 47.619 0.00 0.00 0.00 3.71
2497 2695 3.773418 ATGCTTGAGATCATCCAGGAG 57.227 47.619 0.00 0.00 0.00 3.69
2529 2727 1.368579 CCAAACAAAGGCAGGGCAG 59.631 57.895 0.00 0.00 0.00 4.85
2554 2752 6.630931 GCGCTAGCAATCAAATTAAAATCAC 58.369 36.000 16.45 0.00 44.35 3.06
2555 2753 6.810888 GCGCTAGCAATCAAATTAAAATCA 57.189 33.333 16.45 0.00 44.35 2.57
2571 2769 0.179205 CTTTTGTCAGCAGCGCTAGC 60.179 55.000 10.99 16.77 45.58 3.42
2572 2770 0.179205 GCTTTTGTCAGCAGCGCTAG 60.179 55.000 10.99 5.98 39.83 3.42
2573 2771 0.884259 TGCTTTTGTCAGCAGCGCTA 60.884 50.000 10.99 0.00 45.14 4.26
2574 2772 2.188829 TGCTTTTGTCAGCAGCGCT 61.189 52.632 2.64 2.64 45.14 5.92
2575 2773 2.332514 TGCTTTTGTCAGCAGCGC 59.667 55.556 0.00 0.00 45.14 5.92
2596 2794 2.032634 GTGCGCCGGTTCAGATTGA 61.033 57.895 4.18 0.00 0.00 2.57
2634 2832 4.736126 TGAGCTCCATCTCGTTTATGAA 57.264 40.909 12.15 0.00 35.90 2.57
2644 2842 2.194859 ACATGTCCTTGAGCTCCATCT 58.805 47.619 12.15 0.00 0.00 2.90
2675 2873 2.488204 TGAACCAAATGCATCTCCGA 57.512 45.000 0.00 0.00 0.00 4.55
2686 2884 4.898861 ACCTTCCTTGCTTATTGAACCAAA 59.101 37.500 0.00 0.00 0.00 3.28
2692 2890 3.973206 TCGACCTTCCTTGCTTATTGA 57.027 42.857 0.00 0.00 0.00 2.57
2694 2892 4.369182 CGTATCGACCTTCCTTGCTTATT 58.631 43.478 0.00 0.00 0.00 1.40
2702 2900 1.135083 CAACAGCGTATCGACCTTCCT 60.135 52.381 0.00 0.00 0.00 3.36
2703 2901 1.278238 CAACAGCGTATCGACCTTCC 58.722 55.000 0.00 0.00 0.00 3.46
2704 2902 1.992170 ACAACAGCGTATCGACCTTC 58.008 50.000 0.00 0.00 0.00 3.46
2705 2903 2.450609 AACAACAGCGTATCGACCTT 57.549 45.000 0.00 0.00 0.00 3.50
2706 2904 2.450609 AAACAACAGCGTATCGACCT 57.549 45.000 0.00 0.00 0.00 3.85
2707 2905 4.634991 CTTAAAACAACAGCGTATCGACC 58.365 43.478 0.00 0.00 0.00 4.79
2708 2906 4.079710 GCTTAAAACAACAGCGTATCGAC 58.920 43.478 0.00 0.00 0.00 4.20
2709 2907 4.316375 GCTTAAAACAACAGCGTATCGA 57.684 40.909 0.00 0.00 0.00 3.59
2716 2914 4.788609 GCTCTTATCGCTTAAAACAACAGC 59.211 41.667 0.00 0.00 0.00 4.40
2717 2915 5.927030 TGCTCTTATCGCTTAAAACAACAG 58.073 37.500 0.00 0.00 0.00 3.16
2718 2916 5.933187 TGCTCTTATCGCTTAAAACAACA 57.067 34.783 0.00 0.00 0.00 3.33
2719 2917 6.371389 AGTTGCTCTTATCGCTTAAAACAAC 58.629 36.000 0.00 0.00 32.46 3.32
2720 2918 6.348213 GGAGTTGCTCTTATCGCTTAAAACAA 60.348 38.462 0.00 0.00 0.00 2.83
2721 2919 5.121768 GGAGTTGCTCTTATCGCTTAAAACA 59.878 40.000 0.00 0.00 0.00 2.83
2722 2920 5.121768 TGGAGTTGCTCTTATCGCTTAAAAC 59.878 40.000 0.00 0.00 0.00 2.43
2723 2921 5.242434 TGGAGTTGCTCTTATCGCTTAAAA 58.758 37.500 0.00 0.00 0.00 1.52
2724 2922 4.827692 TGGAGTTGCTCTTATCGCTTAAA 58.172 39.130 0.00 0.00 0.00 1.52
2725 2923 4.465632 TGGAGTTGCTCTTATCGCTTAA 57.534 40.909 0.00 0.00 0.00 1.85
2726 2924 4.181578 GTTGGAGTTGCTCTTATCGCTTA 58.818 43.478 0.00 0.00 0.00 3.09
2727 2925 3.003480 GTTGGAGTTGCTCTTATCGCTT 58.997 45.455 0.00 0.00 0.00 4.68
2728 2926 2.622436 GTTGGAGTTGCTCTTATCGCT 58.378 47.619 0.00 0.00 0.00 4.93
2729 2927 1.324736 CGTTGGAGTTGCTCTTATCGC 59.675 52.381 0.00 0.00 0.00 4.58
2730 2928 1.927174 CCGTTGGAGTTGCTCTTATCG 59.073 52.381 0.00 0.00 0.00 2.92
2731 2929 2.280628 CCCGTTGGAGTTGCTCTTATC 58.719 52.381 0.00 0.00 0.00 1.75
2732 2930 1.679032 GCCCGTTGGAGTTGCTCTTAT 60.679 52.381 0.00 0.00 0.00 1.73
2733 2931 0.321298 GCCCGTTGGAGTTGCTCTTA 60.321 55.000 0.00 0.00 0.00 2.10
2734 2932 1.600916 GCCCGTTGGAGTTGCTCTT 60.601 57.895 0.00 0.00 0.00 2.85
2735 2933 2.032681 GCCCGTTGGAGTTGCTCT 59.967 61.111 0.00 0.00 0.00 4.09
2736 2934 3.056328 GGCCCGTTGGAGTTGCTC 61.056 66.667 0.00 0.00 0.00 4.26
2739 2937 2.046314 ATCGGCCCGTTGGAGTTG 60.046 61.111 1.63 0.00 0.00 3.16
2740 2938 2.267961 GATCGGCCCGTTGGAGTT 59.732 61.111 1.63 0.00 0.00 3.01
2741 2939 4.143333 CGATCGGCCCGTTGGAGT 62.143 66.667 7.38 0.00 0.00 3.85
2742 2940 2.845752 TTTCGATCGGCCCGTTGGAG 62.846 60.000 16.41 0.00 0.00 3.86
2743 2941 2.945161 TTTCGATCGGCCCGTTGGA 61.945 57.895 16.41 0.00 0.00 3.53
2744 2942 2.435234 TTTCGATCGGCCCGTTGG 60.435 61.111 16.41 0.00 0.00 3.77
2745 2943 2.782615 GTTTCGATCGGCCCGTTG 59.217 61.111 16.41 0.00 0.00 4.10
2746 2944 2.812178 CGTTTCGATCGGCCCGTT 60.812 61.111 16.41 0.00 0.00 4.44
2747 2945 4.807039 CCGTTTCGATCGGCCCGT 62.807 66.667 16.41 0.00 41.48 5.28
2758 2956 0.236449 ACAAAATCGCCGACCGTTTC 59.764 50.000 0.00 0.00 38.35 2.78
2759 2957 0.236449 GACAAAATCGCCGACCGTTT 59.764 50.000 0.00 0.00 38.35 3.60
2760 2958 1.571215 GGACAAAATCGCCGACCGTT 61.571 55.000 0.00 0.00 38.35 4.44
2761 2959 2.030958 GGACAAAATCGCCGACCGT 61.031 57.895 0.00 0.00 38.35 4.83
2762 2960 1.366111 ATGGACAAAATCGCCGACCG 61.366 55.000 0.00 0.00 38.61 4.79
2763 2961 0.808755 AATGGACAAAATCGCCGACC 59.191 50.000 0.00 0.00 0.00 4.79
2764 2962 2.095466 TCAAATGGACAAAATCGCCGAC 60.095 45.455 0.00 0.00 0.00 4.79
2765 2963 2.155279 TCAAATGGACAAAATCGCCGA 58.845 42.857 0.00 0.00 0.00 5.54
2766 2964 2.095263 ACTCAAATGGACAAAATCGCCG 60.095 45.455 0.00 0.00 0.00 6.46
2767 2965 3.501950 GACTCAAATGGACAAAATCGCC 58.498 45.455 0.00 0.00 0.00 5.54
2768 2966 3.120338 TCGACTCAAATGGACAAAATCGC 60.120 43.478 0.00 0.00 0.00 4.58
2769 2967 4.394795 GTCGACTCAAATGGACAAAATCG 58.605 43.478 8.70 0.00 0.00 3.34
2770 2968 4.215399 TGGTCGACTCAAATGGACAAAATC 59.785 41.667 16.46 0.00 0.00 2.17
2771 2969 4.141287 TGGTCGACTCAAATGGACAAAAT 58.859 39.130 16.46 0.00 0.00 1.82
2772 2970 3.546724 TGGTCGACTCAAATGGACAAAA 58.453 40.909 16.46 0.00 0.00 2.44
2773 2971 3.138304 CTGGTCGACTCAAATGGACAAA 58.862 45.455 16.46 0.00 0.00 2.83
2774 2972 2.549992 CCTGGTCGACTCAAATGGACAA 60.550 50.000 16.46 0.00 0.00 3.18
2775 2973 1.001974 CCTGGTCGACTCAAATGGACA 59.998 52.381 16.46 0.21 0.00 4.02
2776 2974 1.726853 CCTGGTCGACTCAAATGGAC 58.273 55.000 16.46 0.00 0.00 4.02
2777 2975 0.036388 GCCTGGTCGACTCAAATGGA 60.036 55.000 16.46 0.00 0.00 3.41
2778 2976 1.361668 CGCCTGGTCGACTCAAATGG 61.362 60.000 16.46 10.26 0.00 3.16
2779 2977 1.361668 CCGCCTGGTCGACTCAAATG 61.362 60.000 16.46 1.59 0.00 2.32
2780 2978 1.079127 CCGCCTGGTCGACTCAAAT 60.079 57.895 16.46 0.00 0.00 2.32
2781 2979 2.204461 TCCGCCTGGTCGACTCAAA 61.204 57.895 16.46 0.00 36.30 2.69
2782 2980 2.599281 TCCGCCTGGTCGACTCAA 60.599 61.111 16.46 0.64 36.30 3.02
2783 2981 3.371063 GTCCGCCTGGTCGACTCA 61.371 66.667 16.46 10.78 36.30 3.41
2784 2982 3.371063 TGTCCGCCTGGTCGACTC 61.371 66.667 16.46 6.30 36.30 3.36
2785 2983 3.681835 GTGTCCGCCTGGTCGACT 61.682 66.667 16.46 0.00 36.30 4.18
2789 2987 3.771160 ATCCGTGTCCGCCTGGTC 61.771 66.667 0.00 0.00 36.30 4.02
2790 2988 4.082523 CATCCGTGTCCGCCTGGT 62.083 66.667 0.00 0.00 36.30 4.00
2791 2989 4.082523 ACATCCGTGTCCGCCTGG 62.083 66.667 0.00 0.00 31.41 4.45
2803 3001 3.004734 CCCAAATATGAAAGCGGACATCC 59.995 47.826 0.00 0.00 0.00 3.51
2804 3002 3.632145 ACCCAAATATGAAAGCGGACATC 59.368 43.478 0.00 0.00 0.00 3.06
2805 3003 3.631250 ACCCAAATATGAAAGCGGACAT 58.369 40.909 0.00 0.00 0.00 3.06
2806 3004 3.013921 GACCCAAATATGAAAGCGGACA 58.986 45.455 0.00 0.00 0.00 4.02
2807 3005 2.031683 CGACCCAAATATGAAAGCGGAC 59.968 50.000 0.00 0.00 0.00 4.79
2808 3006 2.285083 CGACCCAAATATGAAAGCGGA 58.715 47.619 0.00 0.00 0.00 5.54
2809 3007 1.333619 CCGACCCAAATATGAAAGCGG 59.666 52.381 0.00 0.00 0.00 5.52
2810 3008 1.268539 GCCGACCCAAATATGAAAGCG 60.269 52.381 0.00 0.00 0.00 4.68
2811 3009 1.268539 CGCCGACCCAAATATGAAAGC 60.269 52.381 0.00 0.00 0.00 3.51
2812 3010 2.014128 ACGCCGACCCAAATATGAAAG 58.986 47.619 0.00 0.00 0.00 2.62
2813 3011 1.740585 CACGCCGACCCAAATATGAAA 59.259 47.619 0.00 0.00 0.00 2.69
2814 3012 1.339247 ACACGCCGACCCAAATATGAA 60.339 47.619 0.00 0.00 0.00 2.57
2815 3013 0.250793 ACACGCCGACCCAAATATGA 59.749 50.000 0.00 0.00 0.00 2.15
2816 3014 0.376852 CACACGCCGACCCAAATATG 59.623 55.000 0.00 0.00 0.00 1.78
2817 3015 1.373590 GCACACGCCGACCCAAATAT 61.374 55.000 0.00 0.00 0.00 1.28
2818 3016 2.036006 GCACACGCCGACCCAAATA 61.036 57.895 0.00 0.00 0.00 1.40
2819 3017 3.361977 GCACACGCCGACCCAAAT 61.362 61.111 0.00 0.00 0.00 2.32
2830 3028 3.716006 CAGTCTTGGGCGCACACG 61.716 66.667 14.54 12.18 44.07 4.49
2831 3029 3.357079 CCAGTCTTGGGCGCACAC 61.357 66.667 14.54 0.00 41.05 3.82
2838 3036 2.359975 GTTCGGGCCAGTCTTGGG 60.360 66.667 4.39 0.00 45.16 4.12
2840 3038 0.609131 AATGGTTCGGGCCAGTCTTG 60.609 55.000 4.39 0.00 42.47 3.02
2841 3039 0.112412 AAATGGTTCGGGCCAGTCTT 59.888 50.000 4.39 0.00 42.47 3.01
2842 3040 0.112412 AAAATGGTTCGGGCCAGTCT 59.888 50.000 4.39 0.00 42.47 3.24
2843 3041 0.243636 CAAAATGGTTCGGGCCAGTC 59.756 55.000 4.39 0.00 42.47 3.51
2844 3042 1.184970 CCAAAATGGTTCGGGCCAGT 61.185 55.000 4.39 0.00 42.47 4.00
2845 3043 1.591183 CCAAAATGGTTCGGGCCAG 59.409 57.895 4.39 0.00 42.47 4.85
2846 3044 1.910772 CCCAAAATGGTTCGGGCCA 60.911 57.895 4.39 1.57 43.48 5.36
2847 3045 1.884075 GACCCAAAATGGTTCGGGCC 61.884 60.000 0.00 0.00 42.97 5.80
2848 3046 0.898326 AGACCCAAAATGGTTCGGGC 60.898 55.000 0.00 0.00 42.97 6.13
2849 3047 1.173913 GAGACCCAAAATGGTTCGGG 58.826 55.000 0.00 0.00 44.88 5.14
2850 3048 2.200373 AGAGACCCAAAATGGTTCGG 57.800 50.000 0.00 0.00 39.24 4.30
2851 3049 4.298332 CAAAAGAGACCCAAAATGGTTCG 58.702 43.478 0.00 0.00 39.24 3.95
2852 3050 4.100963 ACCAAAAGAGACCCAAAATGGTTC 59.899 41.667 0.00 0.00 39.24 3.62
2853 3051 4.037222 ACCAAAAGAGACCCAAAATGGTT 58.963 39.130 0.00 0.00 39.24 3.67
2854 3052 3.653164 ACCAAAAGAGACCCAAAATGGT 58.347 40.909 0.00 0.00 42.79 3.55
2855 3053 4.100808 TGAACCAAAAGAGACCCAAAATGG 59.899 41.667 0.00 0.00 37.25 3.16
2856 3054 5.275067 TGAACCAAAAGAGACCCAAAATG 57.725 39.130 0.00 0.00 0.00 2.32
2857 3055 6.211384 CCTATGAACCAAAAGAGACCCAAAAT 59.789 38.462 0.00 0.00 0.00 1.82
2858 3056 5.538433 CCTATGAACCAAAAGAGACCCAAAA 59.462 40.000 0.00 0.00 0.00 2.44
2859 3057 5.076873 CCTATGAACCAAAAGAGACCCAAA 58.923 41.667 0.00 0.00 0.00 3.28
2860 3058 4.352595 TCCTATGAACCAAAAGAGACCCAA 59.647 41.667 0.00 0.00 0.00 4.12
2861 3059 3.913799 TCCTATGAACCAAAAGAGACCCA 59.086 43.478 0.00 0.00 0.00 4.51
2862 3060 4.569719 TCCTATGAACCAAAAGAGACCC 57.430 45.455 0.00 0.00 0.00 4.46
2863 3061 6.099845 TCCTATCCTATGAACCAAAAGAGACC 59.900 42.308 0.00 0.00 0.00 3.85
2864 3062 7.125792 TCCTATCCTATGAACCAAAAGAGAC 57.874 40.000 0.00 0.00 0.00 3.36
2865 3063 7.937700 ATCCTATCCTATGAACCAAAAGAGA 57.062 36.000 0.00 0.00 0.00 3.10
2868 3066 9.155975 CGATAATCCTATCCTATGAACCAAAAG 57.844 37.037 0.00 0.00 31.68 2.27
2869 3067 8.656806 ACGATAATCCTATCCTATGAACCAAAA 58.343 33.333 0.00 0.00 31.68 2.44
2870 3068 8.202461 ACGATAATCCTATCCTATGAACCAAA 57.798 34.615 0.00 0.00 31.68 3.28
2871 3069 7.792364 ACGATAATCCTATCCTATGAACCAA 57.208 36.000 0.00 0.00 31.68 3.67
2872 3070 8.333984 TCTACGATAATCCTATCCTATGAACCA 58.666 37.037 0.00 0.00 31.68 3.67
2873 3071 8.749026 TCTACGATAATCCTATCCTATGAACC 57.251 38.462 0.00 0.00 31.68 3.62
2944 3142 9.178758 GACATTTTGTTTCCTATTCCTACTCAT 57.821 33.333 0.00 0.00 0.00 2.90
2945 3143 8.160765 TGACATTTTGTTTCCTATTCCTACTCA 58.839 33.333 0.00 0.00 0.00 3.41
2946 3144 8.561738 TGACATTTTGTTTCCTATTCCTACTC 57.438 34.615 0.00 0.00 0.00 2.59
2947 3145 9.533831 AATGACATTTTGTTTCCTATTCCTACT 57.466 29.630 0.00 0.00 0.00 2.57
2950 3148 8.869109 TCAAATGACATTTTGTTTCCTATTCCT 58.131 29.630 10.77 0.00 37.73 3.36
2951 3149 9.657419 ATCAAATGACATTTTGTTTCCTATTCC 57.343 29.630 10.77 0.00 37.73 3.01
2969 3167 6.669125 ATTCCTTTGGTGTCAATCAAATGA 57.331 33.333 3.89 4.37 33.19 2.57
2970 3168 7.733402 AAATTCCTTTGGTGTCAATCAAATG 57.267 32.000 3.89 2.57 33.19 2.32
2971 3169 8.750515 AAAAATTCCTTTGGTGTCAATCAAAT 57.249 26.923 3.89 0.00 33.19 2.32
2972 3170 7.281999 GGAAAAATTCCTTTGGTGTCAATCAAA 59.718 33.333 1.86 3.54 46.57 2.69
2973 3171 6.765512 GGAAAAATTCCTTTGGTGTCAATCAA 59.234 34.615 1.86 0.00 46.57 2.57
2974 3172 6.287525 GGAAAAATTCCTTTGGTGTCAATCA 58.712 36.000 1.86 0.00 46.57 2.57
2975 3173 6.785488 GGAAAAATTCCTTTGGTGTCAATC 57.215 37.500 1.86 0.00 46.57 2.67
2987 3185 8.285329 GAGCCTAGACTCAATGGAAAAATTCCT 61.285 40.741 10.28 0.00 42.21 3.36
2988 3186 6.183360 GAGCCTAGACTCAATGGAAAAATTCC 60.183 42.308 0.51 2.12 42.14 3.01
2989 3187 6.375455 TGAGCCTAGACTCAATGGAAAAATTC 59.625 38.462 6.25 0.00 43.59 2.17
2990 3188 6.248433 TGAGCCTAGACTCAATGGAAAAATT 58.752 36.000 6.25 0.00 43.59 1.82
2991 3189 5.819991 TGAGCCTAGACTCAATGGAAAAAT 58.180 37.500 6.25 0.00 43.59 1.82
2992 3190 5.241403 TGAGCCTAGACTCAATGGAAAAA 57.759 39.130 6.25 0.00 43.59 1.94
2993 3191 4.908601 TGAGCCTAGACTCAATGGAAAA 57.091 40.909 6.25 0.00 43.59 2.29
3002 3200 8.512966 AGGAAAATAAAAATGAGCCTAGACTC 57.487 34.615 0.00 0.00 37.19 3.36
3020 3218 9.359653 CCTATCCTTCACATTTCATAGGAAAAT 57.640 33.333 6.65 0.00 45.52 1.82
3021 3219 8.556589 TCCTATCCTTCACATTTCATAGGAAAA 58.443 33.333 6.65 0.00 45.52 2.29
3022 3220 8.101309 TCCTATCCTTCACATTTCATAGGAAA 57.899 34.615 4.85 4.85 46.36 3.13
3023 3221 7.690454 TCCTATCCTTCACATTTCATAGGAA 57.310 36.000 3.47 0.00 39.17 3.36
3024 3222 7.420214 GGTTCCTATCCTTCACATTTCATAGGA 60.420 40.741 2.01 2.01 39.98 2.94
3025 3223 6.712547 GGTTCCTATCCTTCACATTTCATAGG 59.287 42.308 0.00 0.00 35.93 2.57
3026 3224 7.282585 TGGTTCCTATCCTTCACATTTCATAG 58.717 38.462 0.00 0.00 0.00 2.23
3027 3225 7.206789 TGGTTCCTATCCTTCACATTTCATA 57.793 36.000 0.00 0.00 0.00 2.15
3028 3226 6.078456 TGGTTCCTATCCTTCACATTTCAT 57.922 37.500 0.00 0.00 0.00 2.57
3029 3227 5.512942 TGGTTCCTATCCTTCACATTTCA 57.487 39.130 0.00 0.00 0.00 2.69
3030 3228 6.039829 GGATTGGTTCCTATCCTTCACATTTC 59.960 42.308 19.71 0.00 41.78 2.17
3031 3229 5.893824 GGATTGGTTCCTATCCTTCACATTT 59.106 40.000 19.71 0.00 41.78 2.32
3032 3230 5.449553 GGATTGGTTCCTATCCTTCACATT 58.550 41.667 19.71 0.00 41.78 2.71
3033 3231 5.053978 GGATTGGTTCCTATCCTTCACAT 57.946 43.478 19.71 0.00 41.78 3.21
3034 3232 4.503714 GGATTGGTTCCTATCCTTCACA 57.496 45.455 19.71 0.00 41.78 3.58
3045 3243 7.974504 TCCTATTTCTACATAGGATTGGTTCC 58.025 38.462 5.49 0.00 46.83 3.62
3069 3267 5.302823 CCCTTTGGTTCATAGGAATGGATTC 59.697 44.000 6.07 0.00 35.14 2.52
3070 3268 5.211201 CCCTTTGGTTCATAGGAATGGATT 58.789 41.667 6.07 0.00 35.14 3.01
3071 3269 4.808042 CCCTTTGGTTCATAGGAATGGAT 58.192 43.478 6.07 0.00 35.14 3.41
3072 3270 3.627237 GCCCTTTGGTTCATAGGAATGGA 60.627 47.826 6.07 0.00 35.14 3.41
3073 3271 2.695147 GCCCTTTGGTTCATAGGAATGG 59.305 50.000 6.07 0.00 35.14 3.16
3074 3272 3.635591 AGCCCTTTGGTTCATAGGAATG 58.364 45.455 6.07 0.00 35.14 2.67
3075 3273 4.337264 AAGCCCTTTGGTTCATAGGAAT 57.663 40.909 6.07 0.00 35.14 3.01
3076 3274 3.825908 AAGCCCTTTGGTTCATAGGAA 57.174 42.857 6.07 0.00 35.14 3.36
3077 3275 3.825908 AAAGCCCTTTGGTTCATAGGA 57.174 42.857 6.07 0.00 35.14 2.94
3078 3276 5.105351 CCTTTAAAGCCCTTTGGTTCATAGG 60.105 44.000 9.86 0.00 33.40 2.57
3079 3277 5.714806 TCCTTTAAAGCCCTTTGGTTCATAG 59.285 40.000 9.86 0.00 32.32 2.23
3080 3278 5.646215 TCCTTTAAAGCCCTTTGGTTCATA 58.354 37.500 9.86 0.00 32.32 2.15
3081 3279 4.488770 TCCTTTAAAGCCCTTTGGTTCAT 58.511 39.130 9.86 0.00 32.32 2.57
3082 3280 3.917300 TCCTTTAAAGCCCTTTGGTTCA 58.083 40.909 9.86 0.00 32.32 3.18
3083 3281 4.948341 TTCCTTTAAAGCCCTTTGGTTC 57.052 40.909 9.86 0.00 32.32 3.62
3084 3282 5.702065 TTTTCCTTTAAAGCCCTTTGGTT 57.298 34.783 9.86 0.00 35.85 3.67
3085 3283 5.702065 TTTTTCCTTTAAAGCCCTTTGGT 57.298 34.783 9.86 0.00 34.23 3.67
3116 3314 9.713684 CATAGGAATTCTAGAGGATAGGATTCT 57.286 37.037 13.16 5.20 38.80 2.40
3117 3315 9.707957 TCATAGGAATTCTAGAGGATAGGATTC 57.292 37.037 5.23 7.20 38.32 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.