Multiple sequence alignment - TraesCS6A01G159400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G159400 chr6A 100.000 5745 0 0 1 5745 151487178 151492922 0.000000e+00 10610.0
1 TraesCS6A01G159400 chr6A 94.231 52 3 0 5104 5155 151492228 151492279 4.770000e-11 80.5
2 TraesCS6A01G159400 chr6A 94.231 52 3 0 5051 5102 151492281 151492332 4.770000e-11 80.5
3 TraesCS6A01G159400 chr6D 92.711 4651 217 38 603 5197 127141820 127137236 0.000000e+00 6599.0
4 TraesCS6A01G159400 chr6D 98.077 52 1 0 5051 5102 127137329 127137278 2.200000e-14 91.6
5 TraesCS6A01G159400 chr6B 94.771 3653 118 19 1217 4837 226190761 226187150 0.000000e+00 5620.0
6 TraesCS6A01G159400 chr6B 89.929 705 26 18 515 1211 226191467 226190800 0.000000e+00 867.0
7 TraesCS6A01G159400 chr6B 84.074 540 45 15 1 525 88325644 88326157 3.110000e-132 483.0
8 TraesCS6A01G159400 chr6B 92.803 264 14 3 4934 5197 226187106 226186848 1.510000e-100 377.0
9 TraesCS6A01G159400 chr6B 83.133 166 20 1 5588 5745 226186857 226186692 1.670000e-30 145.0
10 TraesCS6A01G159400 chr6B 96.296 54 2 0 5102 5155 226186996 226186943 7.930000e-14 89.8
11 TraesCS6A01G159400 chr1A 90.926 529 38 4 1 520 300396880 300396353 0.000000e+00 702.0
12 TraesCS6A01G159400 chr1A 88.636 396 38 5 5198 5588 581867095 581866702 5.210000e-130 475.0
13 TraesCS6A01G159400 chr1A 88.384 396 38 6 5198 5587 104392227 104392620 2.420000e-128 470.0
14 TraesCS6A01G159400 chr3A 91.031 524 37 4 1 515 571324934 571324412 0.000000e+00 699.0
15 TraesCS6A01G159400 chr3A 89.905 525 30 6 1 515 587410099 587410610 0.000000e+00 654.0
16 TraesCS6A01G159400 chr3A 87.925 530 39 7 1 519 430782130 430782645 8.240000e-168 601.0
17 TraesCS6A01G159400 chr3A 88.806 402 32 10 5198 5592 439733408 439733013 1.120000e-131 481.0
18 TraesCS6A01G159400 chr3A 88.413 397 40 5 5198 5590 1917926 1918320 1.870000e-129 473.0
19 TraesCS6A01G159400 chr3A 88.000 50 6 0 4249 4298 648262983 648262934 6.220000e-05 60.2
20 TraesCS6A01G159400 chr2A 89.524 525 44 6 1 516 36195289 36194767 0.000000e+00 654.0
21 TraesCS6A01G159400 chr2B 87.121 528 44 8 1 518 648643602 648643089 1.390000e-160 577.0
22 TraesCS6A01G159400 chr2B 85.389 527 52 10 1 515 33533303 33533816 1.830000e-144 523.0
23 TraesCS6A01G159400 chrUn 86.389 529 46 12 1 517 434245281 434244767 6.500000e-154 555.0
24 TraesCS6A01G159400 chrUn 86.389 529 46 12 1 517 445487471 445486957 6.500000e-154 555.0
25 TraesCS6A01G159400 chr5B 86.454 502 43 12 1 492 467371682 467371196 1.420000e-145 527.0
26 TraesCS6A01G159400 chr5B 88.191 398 37 7 5197 5588 34896307 34896700 3.130000e-127 466.0
27 TraesCS6A01G159400 chr4B 88.325 394 39 5 5198 5587 302741079 302741469 3.130000e-127 466.0
28 TraesCS6A01G159400 chr5A 87.970 399 41 6 5197 5591 667931035 667930640 1.130000e-126 464.0
29 TraesCS6A01G159400 chr5A 88.101 395 39 6 5198 5587 570173337 570172946 4.060000e-126 462.0
30 TraesCS6A01G159400 chr4A 87.940 398 37 8 5195 5587 562300968 562300577 5.250000e-125 459.0
31 TraesCS6A01G159400 chr4A 83.000 100 15 2 1026 1124 723693147 723693049 7.930000e-14 89.8
32 TraesCS6A01G159400 chr5D 82.387 511 57 14 17 517 49666453 49666940 1.150000e-111 414.0
33 TraesCS6A01G159400 chr7D 80.741 135 20 5 994 1124 13453849 13453981 3.660000e-17 100.0
34 TraesCS6A01G159400 chr7D 85.366 82 11 1 4087 4168 491265181 491265101 3.690000e-12 84.2
35 TraesCS6A01G159400 chr7A 85.000 100 13 2 1026 1124 12893904 12894002 3.660000e-17 100.0
36 TraesCS6A01G159400 chr7A 85.366 82 11 1 4087 4168 557890110 557890030 3.690000e-12 84.2
37 TraesCS6A01G159400 chr3D 90.909 44 4 0 4249 4292 512675556 512675513 6.220000e-05 60.2
38 TraesCS6A01G159400 chr3B 94.737 38 2 0 4249 4286 675041168 675041205 6.220000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G159400 chr6A 151487178 151492922 5744 False 3590.333333 10610 96.1540 1 5745 3 chr6A.!!$F1 5744
1 TraesCS6A01G159400 chr6D 127137236 127141820 4584 True 6599.000000 6599 92.7110 603 5197 1 chr6D.!!$R1 4594
2 TraesCS6A01G159400 chr6B 226186692 226191467 4775 True 1419.760000 5620 91.3864 515 5745 5 chr6B.!!$R1 5230
3 TraesCS6A01G159400 chr6B 88325644 88326157 513 False 483.000000 483 84.0740 1 525 1 chr6B.!!$F1 524
4 TraesCS6A01G159400 chr1A 300396353 300396880 527 True 702.000000 702 90.9260 1 520 1 chr1A.!!$R1 519
5 TraesCS6A01G159400 chr3A 571324412 571324934 522 True 699.000000 699 91.0310 1 515 1 chr3A.!!$R2 514
6 TraesCS6A01G159400 chr3A 587410099 587410610 511 False 654.000000 654 89.9050 1 515 1 chr3A.!!$F3 514
7 TraesCS6A01G159400 chr3A 430782130 430782645 515 False 601.000000 601 87.9250 1 519 1 chr3A.!!$F2 518
8 TraesCS6A01G159400 chr2A 36194767 36195289 522 True 654.000000 654 89.5240 1 516 1 chr2A.!!$R1 515
9 TraesCS6A01G159400 chr2B 648643089 648643602 513 True 577.000000 577 87.1210 1 518 1 chr2B.!!$R1 517
10 TraesCS6A01G159400 chr2B 33533303 33533816 513 False 523.000000 523 85.3890 1 515 1 chr2B.!!$F1 514
11 TraesCS6A01G159400 chrUn 434244767 434245281 514 True 555.000000 555 86.3890 1 517 1 chrUn.!!$R1 516
12 TraesCS6A01G159400 chrUn 445486957 445487471 514 True 555.000000 555 86.3890 1 517 1 chrUn.!!$R2 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
521 567 0.890683 CCAGCATCGCCCTTTCTTTT 59.109 50.000 0.00 0.0 0.00 2.27 F
1696 1788 1.749634 TCCTTCCTACTAAGCGTCTGC 59.250 52.381 0.00 0.0 43.24 4.26 F
1732 1824 0.749454 GCATTTGCATCCCGGAGAGT 60.749 55.000 0.73 0.0 41.59 3.24 F
2130 2223 1.032014 ACTTGGTGTGGTGCATGTTC 58.968 50.000 0.00 0.0 0.00 3.18 F
3221 3342 1.077716 GCCACTACCCAAATCGCCT 60.078 57.895 0.00 0.0 0.00 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1732 1824 1.844771 GAAGCATGACACGTGCAGCA 61.845 55.000 17.22 12.13 44.87 4.41 R
2781 2902 1.672356 CCTTGTTGCAGAGGGACCG 60.672 63.158 5.25 0.00 0.00 4.79 R
3204 3325 1.760613 TCTAGGCGATTTGGGTAGTGG 59.239 52.381 0.00 0.00 0.00 4.00 R
4080 4235 1.549620 CCCATATGTTGCCTGCAAACA 59.450 47.619 6.07 4.98 37.70 2.83 R
5204 5364 0.033796 ATGCCCATGAGTTCAGGGTG 60.034 55.000 11.44 4.89 45.66 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 4.496336 GCATCTCCCTGGGCGCTT 62.496 66.667 8.22 0.00 0.00 4.68
223 251 2.048127 ACGAAGCCGGTGAAGAGC 60.048 61.111 1.90 0.00 40.78 4.09
349 377 1.006571 GCAACGAGGAGGAACACGA 60.007 57.895 0.00 0.00 0.00 4.35
354 384 2.282958 AGGAGGAACACGAGCCGA 60.283 61.111 1.50 0.00 0.00 5.54
422 454 1.385743 CGCGAGAGAAAAACGACGATT 59.614 47.619 0.00 0.00 0.00 3.34
424 456 3.058520 CGCGAGAGAAAAACGACGATTTA 59.941 43.478 0.00 0.00 0.00 1.40
425 457 4.431986 CGCGAGAGAAAAACGACGATTTAA 60.432 41.667 0.00 0.00 0.00 1.52
428 460 7.168796 GCGAGAGAAAAACGACGATTTAATTA 58.831 34.615 0.00 0.00 0.00 1.40
448 480 2.398588 AGATAAGGATCCAACGGCTCA 58.601 47.619 15.82 0.00 31.81 4.26
450 482 1.860641 TAAGGATCCAACGGCTCAGA 58.139 50.000 15.82 0.00 0.00 3.27
455 487 1.541310 ATCCAACGGCTCAGAACGGA 61.541 55.000 0.00 0.00 0.00 4.69
456 488 1.079127 CCAACGGCTCAGAACGGAT 60.079 57.895 0.00 0.00 0.00 4.18
476 522 2.758327 ATAGAGTGCGACCGGCCA 60.758 61.111 0.00 0.00 42.61 5.36
521 567 0.890683 CCAGCATCGCCCTTTCTTTT 59.109 50.000 0.00 0.00 0.00 2.27
592 638 4.918810 CCCCCAAACAGAGCAATAATAC 57.081 45.455 0.00 0.00 0.00 1.89
593 639 4.536765 CCCCCAAACAGAGCAATAATACT 58.463 43.478 0.00 0.00 0.00 2.12
594 640 5.690865 CCCCCAAACAGAGCAATAATACTA 58.309 41.667 0.00 0.00 0.00 1.82
596 642 6.119536 CCCCAAACAGAGCAATAATACTACA 58.880 40.000 0.00 0.00 0.00 2.74
598 644 7.201732 CCCCAAACAGAGCAATAATACTACAAG 60.202 40.741 0.00 0.00 0.00 3.16
600 646 7.066284 CCAAACAGAGCAATAATACTACAAGCT 59.934 37.037 0.00 0.00 0.00 3.74
602 648 9.838339 AAACAGAGCAATAATACTACAAGCTAT 57.162 29.630 0.00 0.00 0.00 2.97
603 649 9.482627 AACAGAGCAATAATACTACAAGCTATC 57.517 33.333 0.00 0.00 0.00 2.08
604 650 8.091449 ACAGAGCAATAATACTACAAGCTATCC 58.909 37.037 0.00 0.00 0.00 2.59
605 651 8.310382 CAGAGCAATAATACTACAAGCTATCCT 58.690 37.037 0.00 0.00 0.00 3.24
606 652 8.875168 AGAGCAATAATACTACAAGCTATCCTT 58.125 33.333 0.00 0.00 0.00 3.36
716 763 4.410400 CGAAAGGGAAGCGGGGCT 62.410 66.667 0.00 0.00 42.56 5.19
738 785 4.933064 GCCTCGCGGATGTCGGAG 62.933 72.222 6.13 0.00 39.69 4.63
739 786 4.271816 CCTCGCGGATGTCGGAGG 62.272 72.222 6.13 0.00 44.00 4.30
740 787 4.271816 CTCGCGGATGTCGGAGGG 62.272 72.222 6.13 0.00 39.69 4.30
906 953 3.720193 CTGCTGCAGTGCCGTGAC 61.720 66.667 21.21 0.00 0.00 3.67
1184 1239 7.001073 GCTTCCCATTCCTGTTATAATCTCTT 58.999 38.462 0.00 0.00 0.00 2.85
1240 1328 8.175069 TGTTGAAGTTTTCGATGATATGCTAAC 58.825 33.333 0.00 0.00 0.00 2.34
1279 1367 2.613691 CAGGTGCTCAAATTCAATGGC 58.386 47.619 0.00 0.00 0.00 4.40
1294 1382 4.088634 TCAATGGCCAAGAAGCACTATTT 58.911 39.130 10.96 0.00 0.00 1.40
1306 1394 2.892852 AGCACTATTTTCAGCCTTGCAA 59.107 40.909 0.00 0.00 0.00 4.08
1334 1422 6.385467 AGTCAAAGAAGGTAGCATTATCCTCT 59.615 38.462 0.00 0.00 0.00 3.69
1388 1477 9.941664 CTTTTATCTTTTCGATATCACAGCAAT 57.058 29.630 3.12 0.00 34.68 3.56
1442 1534 6.321690 GGCTACTAGAACCTGAAGATACAGAA 59.678 42.308 0.00 0.00 39.94 3.02
1443 1535 7.422399 GCTACTAGAACCTGAAGATACAGAAG 58.578 42.308 0.00 0.00 39.94 2.85
1444 1536 6.783708 ACTAGAACCTGAAGATACAGAAGG 57.216 41.667 0.00 0.00 39.94 3.46
1467 1559 8.489676 AGGTCTTCTGATGATCTGTATATGTT 57.510 34.615 5.61 0.00 0.00 2.71
1640 1732 7.342769 TCGTCTTGCCTAATCTATTTACTGA 57.657 36.000 0.00 0.00 0.00 3.41
1696 1788 1.749634 TCCTTCCTACTAAGCGTCTGC 59.250 52.381 0.00 0.00 43.24 4.26
1732 1824 0.749454 GCATTTGCATCCCGGAGAGT 60.749 55.000 0.73 0.00 41.59 3.24
1742 1834 3.108289 CGGAGAGTGCTGCACGTG 61.108 66.667 25.39 12.28 39.64 4.49
1836 1928 5.187772 ACCATGAACTGTGAAGATAGTGCTA 59.812 40.000 0.00 0.00 0.00 3.49
1853 1945 9.757227 GATAGTGCTATCATCAAGTTTAGTTCT 57.243 33.333 12.80 0.00 41.12 3.01
1898 1990 3.991121 GGTTGTAGCTTCAGTGTCTTCTC 59.009 47.826 0.00 0.00 0.00 2.87
2130 2223 1.032014 ACTTGGTGTGGTGCATGTTC 58.968 50.000 0.00 0.00 0.00 3.18
2181 2292 8.786710 TGGTGGAGCTAAGGTATAACTATTAA 57.213 34.615 0.00 0.00 0.00 1.40
2695 2816 9.109393 GTTCATTGTCAGCTAAGGATAACAATA 57.891 33.333 0.00 0.00 36.02 1.90
2781 2902 7.277760 AGTGTTGCACTTCTTTTTGTTATTTCC 59.722 33.333 0.00 0.00 42.59 3.13
2887 3008 8.840321 AACATTTGTTATGGCTGAGTATCATAC 58.160 33.333 0.00 0.00 39.86 2.39
2940 3061 6.538742 GTGCTACATGAGGCATTCTTTAAGTA 59.461 38.462 17.00 0.00 40.66 2.24
2953 3074 9.489084 GCATTCTTTAAGTAACAAAATTTCCCT 57.511 29.630 0.00 0.00 0.00 4.20
2982 3103 7.402811 TCAAATTGCGAACTCGGTATATTAG 57.597 36.000 0.69 0.00 40.23 1.73
2983 3104 5.840940 AATTGCGAACTCGGTATATTAGC 57.159 39.130 0.69 0.00 40.23 3.09
3221 3342 1.077716 GCCACTACCCAAATCGCCT 60.078 57.895 0.00 0.00 0.00 5.52
3279 3400 3.742882 TCGAGCATGACTTCAAAGAAGTG 59.257 43.478 16.33 4.64 0.00 3.16
3301 3422 5.944007 GTGGTTGGAATCAGGTTAGTATTGT 59.056 40.000 0.00 0.00 0.00 2.71
3327 3448 8.107095 TGTAAAGTTCCTACTTGGATTGCTTAT 58.893 33.333 0.00 0.00 43.74 1.73
3514 3657 5.353956 CCATGTTTACGATCTGTCATTTCCA 59.646 40.000 0.00 0.00 0.00 3.53
4031 4186 2.508526 CCTGCCTTTAGTCTGCAAGTT 58.491 47.619 0.00 0.00 34.06 2.66
4080 4235 3.521126 GCATGGGGATATCTGACTGGTAT 59.479 47.826 2.05 0.00 0.00 2.73
4172 4327 5.941647 TGCTATTGGGTTAGTACAAAACCTC 59.058 40.000 22.34 15.62 44.83 3.85
4207 4363 2.598589 CGTTAGCTACGGCAACTAACA 58.401 47.619 15.47 0.00 46.42 2.41
4307 4463 0.034337 TTGTCACCCACGTAAGCTCC 59.966 55.000 0.00 0.00 45.62 4.70
4308 4464 0.830444 TGTCACCCACGTAAGCTCCT 60.830 55.000 0.00 0.00 45.62 3.69
4557 4713 0.103208 CTCCGGATCCCGTTTCTCAG 59.897 60.000 3.57 0.00 46.80 3.35
4565 4721 1.691976 TCCCGTTTCTCAGCAAGAAGA 59.308 47.619 2.35 0.00 44.69 2.87
4576 4732 1.302033 CAAGAAGAGGCACAGCGGT 60.302 57.895 0.00 0.00 0.00 5.68
4653 4809 4.704833 GAGCTCCAGCACGCCCAA 62.705 66.667 0.87 0.00 45.16 4.12
4711 4867 2.257676 GTGACGACCACGGAGGAC 59.742 66.667 2.94 0.00 44.46 3.85
4764 4920 2.316687 GCGTACATGCTCGCGTTC 59.683 61.111 16.75 0.00 42.79 3.95
4920 5077 0.036010 GCTCTGAAGCCTGCAGGTTA 60.036 55.000 32.81 13.16 43.10 2.85
4948 5107 4.721132 ACTACTTAGCAGACTAGCTAGGG 58.279 47.826 24.35 14.10 46.77 3.53
4955 5114 2.831333 CAGACTAGCTAGGGCATGTTG 58.169 52.381 24.35 8.01 41.70 3.33
4995 5154 5.738370 CGATCTCAACACTTCGAAACTTTT 58.262 37.500 0.00 0.00 33.59 2.27
5036 5196 7.978414 GCCTCGTATTACCTTAGTTAACTCTTT 59.022 37.037 12.39 0.00 0.00 2.52
5059 5219 3.505464 ATGTACCGTACTTCTGAGCAC 57.495 47.619 10.03 0.00 0.00 4.40
5186 5346 8.044060 TGCGAATCAAATATTGAAAGAAGAGT 57.956 30.769 0.00 0.00 43.95 3.24
5191 5351 9.753674 AATCAAATATTGAAAGAAGAGTGGGTA 57.246 29.630 0.00 0.00 43.95 3.69
5192 5352 9.753674 ATCAAATATTGAAAGAAGAGTGGGTAA 57.246 29.630 0.00 0.00 43.95 2.85
5193 5353 9.581289 TCAAATATTGAAAGAAGAGTGGGTAAA 57.419 29.630 0.00 0.00 36.59 2.01
5194 5354 9.846248 CAAATATTGAAAGAAGAGTGGGTAAAG 57.154 33.333 0.00 0.00 0.00 1.85
5195 5355 9.807921 AAATATTGAAAGAAGAGTGGGTAAAGA 57.192 29.630 0.00 0.00 0.00 2.52
5196 5356 9.807921 AATATTGAAAGAAGAGTGGGTAAAGAA 57.192 29.630 0.00 0.00 0.00 2.52
5197 5357 7.751768 ATTGAAAGAAGAGTGGGTAAAGAAG 57.248 36.000 0.00 0.00 0.00 2.85
5198 5358 6.494666 TGAAAGAAGAGTGGGTAAAGAAGA 57.505 37.500 0.00 0.00 0.00 2.87
5199 5359 6.525629 TGAAAGAAGAGTGGGTAAAGAAGAG 58.474 40.000 0.00 0.00 0.00 2.85
5200 5360 6.326583 TGAAAGAAGAGTGGGTAAAGAAGAGA 59.673 38.462 0.00 0.00 0.00 3.10
5201 5361 5.993748 AGAAGAGTGGGTAAAGAAGAGAG 57.006 43.478 0.00 0.00 0.00 3.20
5202 5362 4.775253 AGAAGAGTGGGTAAAGAAGAGAGG 59.225 45.833 0.00 0.00 0.00 3.69
5203 5363 3.445987 AGAGTGGGTAAAGAAGAGAGGG 58.554 50.000 0.00 0.00 0.00 4.30
5204 5364 1.909986 AGTGGGTAAAGAAGAGAGGGC 59.090 52.381 0.00 0.00 0.00 5.19
5205 5365 1.628846 GTGGGTAAAGAAGAGAGGGCA 59.371 52.381 0.00 0.00 0.00 5.36
5206 5366 1.628846 TGGGTAAAGAAGAGAGGGCAC 59.371 52.381 0.00 0.00 0.00 5.01
5219 5379 4.326255 GGCACCCTGAACTCATGG 57.674 61.111 0.00 0.00 37.61 3.66
5220 5380 1.379044 GGCACCCTGAACTCATGGG 60.379 63.158 10.83 10.83 46.07 4.00
5221 5381 2.048603 GCACCCTGAACTCATGGGC 61.049 63.158 11.84 6.49 44.56 5.36
5222 5382 1.379916 CACCCTGAACTCATGGGCA 59.620 57.895 11.84 0.00 44.56 5.36
5223 5383 0.033796 CACCCTGAACTCATGGGCAT 60.034 55.000 11.84 0.00 44.56 4.40
5224 5384 1.212688 CACCCTGAACTCATGGGCATA 59.787 52.381 11.84 0.00 44.56 3.14
5225 5385 2.138542 ACCCTGAACTCATGGGCATAT 58.861 47.619 11.84 0.00 44.56 1.78
5226 5386 2.158564 ACCCTGAACTCATGGGCATATG 60.159 50.000 11.84 0.00 44.56 1.78
5227 5387 1.884579 CCTGAACTCATGGGCATATGC 59.115 52.381 19.79 19.79 41.14 3.14
5228 5388 2.578786 CTGAACTCATGGGCATATGCA 58.421 47.619 28.07 10.14 44.36 3.96
5229 5389 2.292569 CTGAACTCATGGGCATATGCAC 59.707 50.000 28.07 25.88 46.69 4.57
5230 5390 2.092267 TGAACTCATGGGCATATGCACT 60.092 45.455 29.21 13.16 46.62 4.40
5231 5391 2.267174 ACTCATGGGCATATGCACTC 57.733 50.000 29.21 17.49 46.62 3.51
5232 5392 1.491754 ACTCATGGGCATATGCACTCA 59.508 47.619 29.21 21.95 46.62 3.41
5233 5393 1.878088 CTCATGGGCATATGCACTCAC 59.122 52.381 29.21 11.56 46.62 3.51
5234 5394 1.491754 TCATGGGCATATGCACTCACT 59.508 47.619 29.21 9.90 46.62 3.41
5235 5395 2.092267 TCATGGGCATATGCACTCACTT 60.092 45.455 29.21 7.66 46.62 3.16
5236 5396 2.512692 TGGGCATATGCACTCACTTT 57.487 45.000 29.21 0.00 46.62 2.66
5237 5397 2.806434 TGGGCATATGCACTCACTTTT 58.194 42.857 29.21 0.00 46.62 2.27
5238 5398 2.754552 TGGGCATATGCACTCACTTTTC 59.245 45.455 29.21 7.99 46.62 2.29
5239 5399 2.754552 GGGCATATGCACTCACTTTTCA 59.245 45.455 28.07 0.00 42.27 2.69
5240 5400 3.193267 GGGCATATGCACTCACTTTTCAA 59.807 43.478 28.07 0.00 42.27 2.69
5241 5401 4.321899 GGGCATATGCACTCACTTTTCAAA 60.322 41.667 28.07 0.00 42.27 2.69
5242 5402 5.229423 GGCATATGCACTCACTTTTCAAAA 58.771 37.500 28.07 0.00 44.36 2.44
5243 5403 5.695816 GGCATATGCACTCACTTTTCAAAAA 59.304 36.000 28.07 0.00 44.36 1.94
5309 5469 8.841444 AAAGAAAATATCACGCATACATGTTC 57.159 30.769 2.30 0.00 0.00 3.18
5310 5470 6.649436 AGAAAATATCACGCATACATGTTCG 58.351 36.000 2.30 8.45 0.00 3.95
5311 5471 5.984233 AAATATCACGCATACATGTTCGT 57.016 34.783 2.30 9.13 35.35 3.85
5312 5472 7.436970 AGAAAATATCACGCATACATGTTCGTA 59.563 33.333 16.34 6.01 33.51 3.43
5313 5473 6.690704 AATATCACGCATACATGTTCGTAG 57.309 37.500 16.34 12.25 33.51 3.51
5314 5474 3.768468 TCACGCATACATGTTCGTAGA 57.232 42.857 16.34 13.70 33.51 2.59
5315 5475 4.301637 TCACGCATACATGTTCGTAGAT 57.698 40.909 16.34 0.00 35.04 1.98
5316 5476 4.041723 TCACGCATACATGTTCGTAGATG 58.958 43.478 16.34 9.22 35.04 2.90
5317 5477 3.796717 CACGCATACATGTTCGTAGATGT 59.203 43.478 16.34 9.67 40.88 3.06
5318 5478 3.796717 ACGCATACATGTTCGTAGATGTG 59.203 43.478 13.94 14.51 38.58 3.21
5319 5479 3.796717 CGCATACATGTTCGTAGATGTGT 59.203 43.478 13.94 5.52 38.58 3.72
5320 5480 4.317348 CGCATACATGTTCGTAGATGTGTG 60.317 45.833 19.35 19.35 44.63 3.82
5321 5481 4.566759 GCATACATGTTCGTAGATGTGTGT 59.433 41.667 22.49 6.09 44.08 3.72
5322 5482 5.746721 GCATACATGTTCGTAGATGTGTGTA 59.253 40.000 22.49 3.70 44.08 2.90
5323 5483 6.291637 GCATACATGTTCGTAGATGTGTGTAC 60.292 42.308 22.49 9.57 44.08 2.90
5324 5484 4.163552 ACATGTTCGTAGATGTGTGTACG 58.836 43.478 3.98 0.00 45.76 3.67
5325 5485 3.902261 TGTTCGTAGATGTGTGTACGT 57.098 42.857 0.00 0.00 44.96 3.57
5326 5486 3.557508 TGTTCGTAGATGTGTGTACGTG 58.442 45.455 0.00 0.00 44.96 4.49
5327 5487 3.250521 TGTTCGTAGATGTGTGTACGTGA 59.749 43.478 0.00 0.00 44.96 4.35
5328 5488 3.460362 TCGTAGATGTGTGTACGTGAC 57.540 47.619 0.00 0.00 44.96 3.67
5329 5489 2.807392 TCGTAGATGTGTGTACGTGACA 59.193 45.455 0.00 0.00 44.96 3.58
5342 5502 6.905544 TGTACGTGACACAAAGTTTTATGA 57.094 33.333 6.37 0.00 31.20 2.15
5343 5503 7.304919 TGTACGTGACACAAAGTTTTATGAA 57.695 32.000 6.37 0.00 31.20 2.57
5344 5504 7.749808 TGTACGTGACACAAAGTTTTATGAAA 58.250 30.769 6.37 0.00 31.20 2.69
5345 5505 8.235226 TGTACGTGACACAAAGTTTTATGAAAA 58.765 29.630 6.37 0.00 31.20 2.29
5346 5506 9.063739 GTACGTGACACAAAGTTTTATGAAAAA 57.936 29.630 6.37 0.00 32.15 1.94
5387 5547 8.835467 TCTTCGTAAAAAGACAAATTTCAGTG 57.165 30.769 0.00 0.00 30.38 3.66
5388 5548 7.431084 TCTTCGTAAAAAGACAAATTTCAGTGC 59.569 33.333 0.00 0.00 30.38 4.40
5389 5549 6.791303 TCGTAAAAAGACAAATTTCAGTGCT 58.209 32.000 0.00 0.00 0.00 4.40
5390 5550 7.254852 TCGTAAAAAGACAAATTTCAGTGCTT 58.745 30.769 0.00 0.00 0.00 3.91
5391 5551 7.431084 TCGTAAAAAGACAAATTTCAGTGCTTC 59.569 33.333 0.00 0.00 0.00 3.86
5392 5552 7.432252 CGTAAAAAGACAAATTTCAGTGCTTCT 59.568 33.333 0.00 0.00 0.00 2.85
5393 5553 9.730420 GTAAAAAGACAAATTTCAGTGCTTCTA 57.270 29.630 0.00 0.00 0.00 2.10
5395 5555 9.651913 AAAAAGACAAATTTCAGTGCTTCTAAA 57.348 25.926 0.00 0.00 0.00 1.85
5396 5556 9.822185 AAAAGACAAATTTCAGTGCTTCTAAAT 57.178 25.926 0.00 0.00 0.00 1.40
5399 5559 9.289782 AGACAAATTTCAGTGCTTCTAAATAGT 57.710 29.630 0.00 0.00 0.00 2.12
5400 5560 9.334693 GACAAATTTCAGTGCTTCTAAATAGTG 57.665 33.333 0.00 0.00 0.00 2.74
5401 5561 8.850156 ACAAATTTCAGTGCTTCTAAATAGTGT 58.150 29.630 0.00 0.00 0.00 3.55
5402 5562 9.683069 CAAATTTCAGTGCTTCTAAATAGTGTT 57.317 29.630 0.00 0.00 0.00 3.32
5403 5563 9.899226 AAATTTCAGTGCTTCTAAATAGTGTTC 57.101 29.630 0.00 0.00 0.00 3.18
5404 5564 7.435068 TTTCAGTGCTTCTAAATAGTGTTCC 57.565 36.000 0.00 0.00 0.00 3.62
5405 5565 6.109156 TCAGTGCTTCTAAATAGTGTTCCA 57.891 37.500 0.00 0.00 0.00 3.53
5406 5566 5.932303 TCAGTGCTTCTAAATAGTGTTCCAC 59.068 40.000 0.00 0.00 34.10 4.02
5407 5567 4.929808 AGTGCTTCTAAATAGTGTTCCACG 59.070 41.667 0.00 0.00 39.64 4.94
5408 5568 4.092968 GTGCTTCTAAATAGTGTTCCACGG 59.907 45.833 0.00 0.00 39.64 4.94
5409 5569 3.063588 GCTTCTAAATAGTGTTCCACGGC 59.936 47.826 0.00 0.00 39.64 5.68
5410 5570 3.965379 TCTAAATAGTGTTCCACGGCA 57.035 42.857 0.00 0.00 39.64 5.69
5411 5571 4.481368 TCTAAATAGTGTTCCACGGCAT 57.519 40.909 0.00 0.00 39.64 4.40
5412 5572 5.601583 TCTAAATAGTGTTCCACGGCATA 57.398 39.130 0.00 0.00 39.64 3.14
5413 5573 5.979993 TCTAAATAGTGTTCCACGGCATAA 58.020 37.500 0.00 0.00 39.64 1.90
5414 5574 6.588204 TCTAAATAGTGTTCCACGGCATAAT 58.412 36.000 0.00 0.00 39.64 1.28
5415 5575 7.051623 TCTAAATAGTGTTCCACGGCATAATT 58.948 34.615 0.00 0.00 39.64 1.40
5416 5576 6.524101 AAATAGTGTTCCACGGCATAATTT 57.476 33.333 0.00 0.00 39.64 1.82
5417 5577 6.524101 AATAGTGTTCCACGGCATAATTTT 57.476 33.333 0.00 0.00 39.64 1.82
5418 5578 4.434713 AGTGTTCCACGGCATAATTTTC 57.565 40.909 0.00 0.00 39.64 2.29
5419 5579 4.079253 AGTGTTCCACGGCATAATTTTCT 58.921 39.130 0.00 0.00 39.64 2.52
5420 5580 4.082787 AGTGTTCCACGGCATAATTTTCTG 60.083 41.667 0.00 0.00 39.64 3.02
5421 5581 3.823873 TGTTCCACGGCATAATTTTCTGT 59.176 39.130 0.00 0.00 0.00 3.41
5422 5582 4.083003 TGTTCCACGGCATAATTTTCTGTC 60.083 41.667 0.00 0.00 0.00 3.51
5423 5583 3.950397 TCCACGGCATAATTTTCTGTCT 58.050 40.909 0.00 0.00 0.00 3.41
5424 5584 4.331968 TCCACGGCATAATTTTCTGTCTT 58.668 39.130 0.00 0.00 0.00 3.01
5425 5585 4.764823 TCCACGGCATAATTTTCTGTCTTT 59.235 37.500 0.00 0.00 0.00 2.52
5426 5586 5.242838 TCCACGGCATAATTTTCTGTCTTTT 59.757 36.000 0.00 0.00 0.00 2.27
5427 5587 5.925969 CCACGGCATAATTTTCTGTCTTTTT 59.074 36.000 0.00 0.00 0.00 1.94
5447 5607 6.414408 TTTTTGCACATACCACAACAAAAG 57.586 33.333 0.00 0.00 38.01 2.27
5448 5608 4.727507 TTGCACATACCACAACAAAAGT 57.272 36.364 0.00 0.00 0.00 2.66
5449 5609 4.300189 TGCACATACCACAACAAAAGTC 57.700 40.909 0.00 0.00 0.00 3.01
5450 5610 3.696548 TGCACATACCACAACAAAAGTCA 59.303 39.130 0.00 0.00 0.00 3.41
5451 5611 4.340666 TGCACATACCACAACAAAAGTCAT 59.659 37.500 0.00 0.00 0.00 3.06
5452 5612 5.163468 TGCACATACCACAACAAAAGTCATT 60.163 36.000 0.00 0.00 0.00 2.57
5453 5613 5.752955 GCACATACCACAACAAAAGTCATTT 59.247 36.000 0.00 0.00 0.00 2.32
5454 5614 6.257630 GCACATACCACAACAAAAGTCATTTT 59.742 34.615 0.00 0.00 39.22 1.82
5455 5615 7.201600 GCACATACCACAACAAAAGTCATTTTT 60.202 33.333 0.00 0.00 39.55 1.94
5456 5616 8.327429 CACATACCACAACAAAAGTCATTTTTC 58.673 33.333 0.00 0.00 36.87 2.29
5457 5617 7.494298 ACATACCACAACAAAAGTCATTTTTCC 59.506 33.333 0.00 0.00 36.87 3.13
5458 5618 4.867608 ACCACAACAAAAGTCATTTTTCCG 59.132 37.500 0.00 0.00 36.87 4.30
5459 5619 4.867608 CCACAACAAAAGTCATTTTTCCGT 59.132 37.500 0.00 0.00 36.87 4.69
5460 5620 5.220378 CCACAACAAAAGTCATTTTTCCGTG 60.220 40.000 0.00 0.00 36.87 4.94
5461 5621 5.574830 CACAACAAAAGTCATTTTTCCGTGA 59.425 36.000 0.00 0.00 36.87 4.35
5462 5622 6.090088 CACAACAAAAGTCATTTTTCCGTGAA 59.910 34.615 0.00 0.00 36.87 3.18
5463 5623 6.647067 ACAACAAAAGTCATTTTTCCGTGAAA 59.353 30.769 0.00 0.00 36.87 2.69
5464 5624 7.333174 ACAACAAAAGTCATTTTTCCGTGAAAT 59.667 29.630 0.81 0.00 36.87 2.17
5465 5625 7.841915 ACAAAAGTCATTTTTCCGTGAAATT 57.158 28.000 0.81 0.00 36.87 1.82
5466 5626 8.262715 ACAAAAGTCATTTTTCCGTGAAATTT 57.737 26.923 0.00 0.00 36.87 1.82
5467 5627 8.726068 ACAAAAGTCATTTTTCCGTGAAATTTT 58.274 25.926 0.00 2.00 36.87 1.82
5471 5631 8.017587 AGTCATTTTTCCGTGAAATTTTATGC 57.982 30.769 0.00 0.00 31.34 3.14
5472 5632 7.655328 AGTCATTTTTCCGTGAAATTTTATGCA 59.345 29.630 0.00 0.00 31.34 3.96
5473 5633 7.739911 GTCATTTTTCCGTGAAATTTTATGCAC 59.260 33.333 0.00 0.00 31.34 4.57
5477 5637 3.600026 CGTGAAATTTTATGCACGCAC 57.400 42.857 14.64 5.14 45.81 5.34
5478 5638 2.976509 CGTGAAATTTTATGCACGCACA 59.023 40.909 14.64 0.00 45.81 4.57
5479 5639 3.607641 CGTGAAATTTTATGCACGCACAT 59.392 39.130 14.64 0.00 45.81 3.21
5480 5640 4.790651 CGTGAAATTTTATGCACGCACATA 59.209 37.500 14.64 0.00 45.81 2.29
5481 5641 5.284897 CGTGAAATTTTATGCACGCACATAA 59.715 36.000 14.64 6.61 45.81 1.90
5482 5642 6.183359 CGTGAAATTTTATGCACGCACATAAA 60.183 34.615 14.64 15.64 45.92 1.40
5487 5647 1.962412 ATGCACGCACATAAAACACG 58.038 45.000 0.00 0.00 0.00 4.49
5488 5648 0.938008 TGCACGCACATAAAACACGA 59.062 45.000 0.00 0.00 0.00 4.35
5489 5649 1.330829 TGCACGCACATAAAACACGAA 59.669 42.857 0.00 0.00 0.00 3.85
5490 5650 1.969256 GCACGCACATAAAACACGAAG 59.031 47.619 0.00 0.00 0.00 3.79
5491 5651 2.349060 GCACGCACATAAAACACGAAGA 60.349 45.455 0.00 0.00 0.00 2.87
5492 5652 3.666902 GCACGCACATAAAACACGAAGAT 60.667 43.478 0.00 0.00 0.00 2.40
5493 5653 3.840209 CACGCACATAAAACACGAAGATG 59.160 43.478 0.00 0.00 0.00 2.90
5494 5654 3.496884 ACGCACATAAAACACGAAGATGT 59.503 39.130 0.00 0.00 0.00 3.06
5495 5655 4.687018 ACGCACATAAAACACGAAGATGTA 59.313 37.500 0.00 0.00 30.75 2.29
5496 5656 5.013236 CGCACATAAAACACGAAGATGTAC 58.987 41.667 0.00 0.00 30.75 2.90
5497 5657 5.321516 GCACATAAAACACGAAGATGTACC 58.678 41.667 0.00 0.00 30.75 3.34
5498 5658 5.672819 GCACATAAAACACGAAGATGTACCC 60.673 44.000 0.00 0.00 30.75 3.69
5499 5659 4.628333 ACATAAAACACGAAGATGTACCCG 59.372 41.667 0.00 0.00 30.75 5.28
5500 5660 2.825861 AAACACGAAGATGTACCCGT 57.174 45.000 0.00 0.00 35.46 5.28
5502 5662 2.369870 CACGAAGATGTACCCGTGC 58.630 57.895 0.00 0.00 44.24 5.34
5503 5663 0.389296 CACGAAGATGTACCCGTGCA 60.389 55.000 0.00 0.00 44.24 4.57
5504 5664 0.319083 ACGAAGATGTACCCGTGCAA 59.681 50.000 0.00 0.00 33.69 4.08
5505 5665 1.066430 ACGAAGATGTACCCGTGCAAT 60.066 47.619 0.00 0.00 33.69 3.56
5506 5666 2.006888 CGAAGATGTACCCGTGCAATT 58.993 47.619 0.00 0.00 0.00 2.32
5507 5667 2.418628 CGAAGATGTACCCGTGCAATTT 59.581 45.455 0.00 0.00 0.00 1.82
5508 5668 3.119990 CGAAGATGTACCCGTGCAATTTT 60.120 43.478 0.00 0.00 0.00 1.82
5509 5669 4.614993 CGAAGATGTACCCGTGCAATTTTT 60.615 41.667 0.00 0.00 0.00 1.94
5563 5723 9.906660 TGTTTTTCAAAGTGGATTCATATGTAC 57.093 29.630 1.90 0.00 0.00 2.90
5564 5724 9.353999 GTTTTTCAAAGTGGATTCATATGTACC 57.646 33.333 1.90 5.74 0.00 3.34
5565 5725 7.639113 TTTCAAAGTGGATTCATATGTACCC 57.361 36.000 1.90 0.00 0.00 3.69
5566 5726 5.364778 TCAAAGTGGATTCATATGTACCCG 58.635 41.667 1.90 0.00 0.00 5.28
5567 5727 5.129650 TCAAAGTGGATTCATATGTACCCGA 59.870 40.000 1.90 0.00 0.00 5.14
5568 5728 5.825593 AAGTGGATTCATATGTACCCGAT 57.174 39.130 1.90 0.00 0.00 4.18
5569 5729 5.825593 AGTGGATTCATATGTACCCGATT 57.174 39.130 1.90 0.00 0.00 3.34
5570 5730 6.187727 AGTGGATTCATATGTACCCGATTT 57.812 37.500 1.90 0.00 0.00 2.17
5571 5731 6.231211 AGTGGATTCATATGTACCCGATTTC 58.769 40.000 1.90 0.00 0.00 2.17
5572 5732 5.995282 GTGGATTCATATGTACCCGATTTCA 59.005 40.000 1.90 0.00 0.00 2.69
5573 5733 6.655003 GTGGATTCATATGTACCCGATTTCAT 59.345 38.462 1.90 0.00 0.00 2.57
5574 5734 6.878923 TGGATTCATATGTACCCGATTTCATC 59.121 38.462 1.90 0.00 0.00 2.92
5575 5735 6.316390 GGATTCATATGTACCCGATTTCATCC 59.684 42.308 1.90 0.00 0.00 3.51
5576 5736 5.816955 TCATATGTACCCGATTTCATCCA 57.183 39.130 1.90 0.00 0.00 3.41
5577 5737 6.373005 TCATATGTACCCGATTTCATCCAT 57.627 37.500 1.90 0.00 0.00 3.41
5578 5738 6.172630 TCATATGTACCCGATTTCATCCATG 58.827 40.000 1.90 0.00 0.00 3.66
5579 5739 2.571212 TGTACCCGATTTCATCCATGC 58.429 47.619 0.00 0.00 0.00 4.06
5580 5740 2.092699 TGTACCCGATTTCATCCATGCA 60.093 45.455 0.00 0.00 0.00 3.96
5581 5741 1.392589 ACCCGATTTCATCCATGCAC 58.607 50.000 0.00 0.00 0.00 4.57
5582 5742 1.064463 ACCCGATTTCATCCATGCACT 60.064 47.619 0.00 0.00 0.00 4.40
5583 5743 1.605710 CCCGATTTCATCCATGCACTC 59.394 52.381 0.00 0.00 0.00 3.51
5584 5744 1.605710 CCGATTTCATCCATGCACTCC 59.394 52.381 0.00 0.00 0.00 3.85
5585 5745 2.569059 CGATTTCATCCATGCACTCCT 58.431 47.619 0.00 0.00 0.00 3.69
5586 5746 2.547211 CGATTTCATCCATGCACTCCTC 59.453 50.000 0.00 0.00 0.00 3.71
5587 5747 2.028420 TTTCATCCATGCACTCCTCG 57.972 50.000 0.00 0.00 0.00 4.63
5588 5748 0.178767 TTCATCCATGCACTCCTCGG 59.821 55.000 0.00 0.00 0.00 4.63
5589 5749 1.227764 CATCCATGCACTCCTCGGG 60.228 63.158 0.00 0.00 0.00 5.14
5590 5750 1.690633 ATCCATGCACTCCTCGGGT 60.691 57.895 0.00 0.00 0.00 5.28
5613 5773 1.700739 AGAAACCCATCCGTGGTTGTA 59.299 47.619 0.00 0.00 45.23 2.41
5662 5830 3.683885 TCTCTAAAGGAGACCGGCA 57.316 52.632 0.00 0.00 45.20 5.69
5671 5839 0.178068 GGAGACCGGCAAATAGCTCA 59.822 55.000 0.00 0.00 44.79 4.26
5673 5841 0.462759 AGACCGGCAAATAGCTCAGC 60.463 55.000 0.00 0.00 44.79 4.26
5675 5843 0.830648 ACCGGCAAATAGCTCAGCTA 59.169 50.000 9.36 9.36 45.55 3.32
5676 5844 1.221414 CCGGCAAATAGCTCAGCTAC 58.779 55.000 9.07 0.00 44.24 3.58
5681 5849 3.629398 GGCAAATAGCTCAGCTACATGTT 59.371 43.478 9.07 0.00 44.24 2.71
5685 5853 2.751166 AGCTCAGCTACATGTTCGTT 57.249 45.000 2.30 0.00 36.99 3.85
5693 5861 7.197071 TCAGCTACATGTTCGTTTTTATGTT 57.803 32.000 2.30 0.00 35.55 2.71
5695 5863 6.246332 CAGCTACATGTTCGTTTTTATGTTCG 59.754 38.462 2.30 0.00 35.55 3.95
5698 5866 4.673311 ACATGTTCGTTTTTATGTTCGCAC 59.327 37.500 0.00 0.00 30.05 5.34
5699 5867 4.274421 TGTTCGTTTTTATGTTCGCACA 57.726 36.364 0.00 0.00 37.31 4.57
5705 5873 3.840890 TTTTATGTTCGCACATGGTCC 57.159 42.857 11.11 0.00 43.92 4.46
5719 5887 2.106074 GGTCCGCGAACATGATGCA 61.106 57.895 8.23 0.00 0.00 3.96
5720 5888 1.349627 GTCCGCGAACATGATGCAG 59.650 57.895 8.23 0.00 0.00 4.41
5725 5893 1.590932 GCGAACATGATGCAGGAGAT 58.409 50.000 0.00 0.00 0.00 2.75
5729 5897 3.986572 CGAACATGATGCAGGAGATAGTC 59.013 47.826 0.00 0.00 0.00 2.59
5737 5905 5.072736 TGATGCAGGAGATAGTCATCCAATT 59.927 40.000 0.00 0.00 38.12 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 3.973267 GACGACTGGAGCTCACCGC 62.973 68.421 17.19 0.00 39.57 5.68
206 233 2.048127 GCTCTTCACCGGCTTCGT 60.048 61.111 0.00 0.00 0.00 3.85
223 251 2.202797 CAGTCCTCGGCGACCATG 60.203 66.667 4.99 0.00 32.91 3.66
333 361 1.289380 GCTCGTGTTCCTCCTCGTT 59.711 57.895 0.00 0.00 0.00 3.85
340 368 4.052229 CGGTCGGCTCGTGTTCCT 62.052 66.667 0.00 0.00 0.00 3.36
354 384 3.782443 GAACCCCATCTCGCCGGT 61.782 66.667 1.90 0.00 0.00 5.28
413 445 9.420551 GGATCCTTATCTAATTAAATCGTCGTT 57.579 33.333 3.84 0.00 32.29 3.85
422 454 7.074653 AGCCGTTGGATCCTTATCTAATTAA 57.925 36.000 14.23 0.00 35.36 1.40
424 456 5.071788 TGAGCCGTTGGATCCTTATCTAATT 59.928 40.000 14.23 0.00 37.30 1.40
425 457 4.593206 TGAGCCGTTGGATCCTTATCTAAT 59.407 41.667 14.23 0.00 37.30 1.73
428 460 2.366916 CTGAGCCGTTGGATCCTTATCT 59.633 50.000 14.23 3.64 37.30 1.98
448 480 1.264557 CGCACTCTATCGATCCGTTCT 59.735 52.381 0.00 0.00 0.00 3.01
450 482 1.002684 GTCGCACTCTATCGATCCGTT 60.003 52.381 0.00 0.00 37.06 4.44
455 487 1.950007 CCGGTCGCACTCTATCGAT 59.050 57.895 2.16 2.16 37.06 3.59
456 488 2.831366 GCCGGTCGCACTCTATCGA 61.831 63.158 1.90 0.00 37.47 3.59
463 509 3.284449 GTTTTGGCCGGTCGCACT 61.284 61.111 0.00 0.00 40.31 4.40
503 549 2.730550 AAAAAGAAAGGGCGATGCTG 57.269 45.000 0.00 0.00 0.00 4.41
1240 1328 3.501445 CCTGCAGAGAGAAAGGTTTCTTG 59.499 47.826 17.39 2.96 46.84 3.02
1279 1367 3.760684 AGGCTGAAAATAGTGCTTCTTGG 59.239 43.478 0.00 0.00 0.00 3.61
1294 1382 2.346766 TGACTCTTTGCAAGGCTGAA 57.653 45.000 3.19 0.00 0.00 3.02
1306 1394 7.051000 GGATAATGCTACCTTCTTTGACTCTT 58.949 38.462 0.00 0.00 0.00 2.85
1334 1422 8.737168 AGTTATGCAGCAATCTAACTAAATCA 57.263 30.769 15.41 0.00 33.75 2.57
1442 1534 8.489676 AACATATACAGATCATCAGAAGACCT 57.510 34.615 0.00 0.00 0.00 3.85
1443 1535 8.584157 AGAACATATACAGATCATCAGAAGACC 58.416 37.037 0.00 0.00 0.00 3.85
1467 1559 8.855110 TGCAATTTTAATCAGGAAACAACTAGA 58.145 29.630 0.00 0.00 0.00 2.43
1640 1732 6.883217 AGAATCATCAACTCTGCACAAGTAAT 59.117 34.615 0.00 0.00 0.00 1.89
1696 1788 5.276678 GCAAATGCGATTGATGAGATTTTGG 60.277 40.000 5.55 0.00 31.84 3.28
1732 1824 1.844771 GAAGCATGACACGTGCAGCA 61.845 55.000 17.22 12.13 44.87 4.41
1865 1957 7.549134 CACTGAAGCTACAACCACATATTTAGA 59.451 37.037 0.00 0.00 0.00 2.10
1874 1966 3.113260 AGACACTGAAGCTACAACCAC 57.887 47.619 0.00 0.00 0.00 4.16
1877 1969 4.877282 AGAGAAGACACTGAAGCTACAAC 58.123 43.478 0.00 0.00 0.00 3.32
1898 1990 4.870426 TCAGCGCTACTATCAAAGGAAAAG 59.130 41.667 10.99 0.00 0.00 2.27
2130 2223 2.607635 ACAGCGTTGTAACACAGAACAG 59.392 45.455 1.89 0.00 35.25 3.16
2181 2292 8.154856 ACACGTATTCAGCCCAGTAATAATAAT 58.845 33.333 0.00 0.00 0.00 1.28
2183 2294 7.058023 ACACGTATTCAGCCCAGTAATAATA 57.942 36.000 0.00 0.00 0.00 0.98
2184 2295 5.925509 ACACGTATTCAGCCCAGTAATAAT 58.074 37.500 0.00 0.00 0.00 1.28
2185 2296 5.347620 ACACGTATTCAGCCCAGTAATAA 57.652 39.130 0.00 0.00 0.00 1.40
2186 2297 5.347620 AACACGTATTCAGCCCAGTAATA 57.652 39.130 0.00 0.00 0.00 0.98
2187 2298 3.906720 ACACGTATTCAGCCCAGTAAT 57.093 42.857 0.00 0.00 0.00 1.89
2188 2299 3.688694 AACACGTATTCAGCCCAGTAA 57.311 42.857 0.00 0.00 0.00 2.24
2189 2300 3.007074 TGAAACACGTATTCAGCCCAGTA 59.993 43.478 10.86 0.00 33.15 2.74
2190 2301 2.224426 TGAAACACGTATTCAGCCCAGT 60.224 45.455 10.86 0.00 33.15 4.00
2191 2302 2.422597 TGAAACACGTATTCAGCCCAG 58.577 47.619 10.86 0.00 33.15 4.45
2192 2303 2.552599 TGAAACACGTATTCAGCCCA 57.447 45.000 10.86 0.00 33.15 5.36
2564 2676 4.595762 AATTTCATATGCAGCCATGGAC 57.404 40.909 18.40 7.03 32.85 4.02
2565 2677 6.097981 TGTTTAATTTCATATGCAGCCATGGA 59.902 34.615 18.40 0.00 32.85 3.41
2695 2816 9.512588 CTTCATGTCATAATAGCTTTCCCTATT 57.487 33.333 0.00 0.00 40.24 1.73
2781 2902 1.672356 CCTTGTTGCAGAGGGACCG 60.672 63.158 5.25 0.00 0.00 4.79
2898 3019 9.687210 CATGTAGCACAGAAATATTGCAATAAT 57.313 29.630 22.37 12.18 38.81 1.28
2921 3042 9.643693 ATTTTGTTACTTAAAGAATGCCTCATG 57.356 29.630 0.00 0.00 0.00 3.07
2940 3061 8.136800 GCAATTTGAATTCAGGGAAATTTTGTT 58.863 29.630 8.41 0.00 0.00 2.83
2953 3074 3.252215 ACCGAGTTCGCAATTTGAATTCA 59.748 39.130 3.38 3.38 38.18 2.57
2982 3103 5.841957 AACCTTTGGAATCATCATACAGC 57.158 39.130 0.00 0.00 0.00 4.40
3204 3325 1.760613 TCTAGGCGATTTGGGTAGTGG 59.239 52.381 0.00 0.00 0.00 4.00
3221 3342 7.390440 CCATGTACTTGTGGAAATCAAAGTCTA 59.610 37.037 7.86 0.00 37.72 2.59
3279 3400 5.944007 ACACAATACTAACCTGATTCCAACC 59.056 40.000 0.00 0.00 0.00 3.77
3334 3455 7.178274 TGAGCATCATTAGGTAAACCAAACAAT 59.822 33.333 1.26 0.00 42.56 2.71
3657 3812 1.956477 GGCAAGAAAGACAGCCAGAAA 59.044 47.619 0.00 0.00 46.26 2.52
4080 4235 1.549620 CCCATATGTTGCCTGCAAACA 59.450 47.619 6.07 4.98 37.70 2.83
4172 4327 4.514401 AGCTAACGGGAAAAAGATAGTGG 58.486 43.478 0.00 0.00 0.00 4.00
4207 4363 6.757897 TTTGACACAGAAACAGAATTGTCT 57.242 33.333 0.00 0.00 36.23 3.41
4307 4463 5.720371 TGGTGAAATTAATGGTGGAACAG 57.280 39.130 0.00 0.00 41.80 3.16
4308 4464 5.835819 TCTTGGTGAAATTAATGGTGGAACA 59.164 36.000 0.00 0.00 39.98 3.18
4557 4713 2.684843 CCGCTGTGCCTCTTCTTGC 61.685 63.158 0.00 0.00 0.00 4.01
4636 4792 4.704833 TTGGGCGTGCTGGAGCTC 62.705 66.667 4.71 4.71 42.66 4.09
4888 5045 1.153489 CAGAGCTAGCATGCCACGT 60.153 57.895 18.83 0.00 0.00 4.49
4892 5049 2.319219 GCTTCAGAGCTAGCATGCC 58.681 57.895 18.83 0.00 45.65 4.40
4920 5077 9.280174 CTAGCTAGTCTGCTAAGTAGTTTATCT 57.720 37.037 12.92 0.00 43.84 1.98
4948 5107 0.673644 ACGGTCCAGTAGCAACATGC 60.674 55.000 0.00 0.00 45.46 4.06
4995 5154 9.726232 GTAATACGAGGCGATATTATATTGTCA 57.274 33.333 6.81 0.00 0.00 3.58
5036 5196 6.060136 AGTGCTCAGAAGTACGGTACATATA 58.940 40.000 19.62 1.51 42.38 0.86
5037 5197 4.888239 AGTGCTCAGAAGTACGGTACATAT 59.112 41.667 19.62 2.93 42.38 1.78
5038 5198 4.267536 AGTGCTCAGAAGTACGGTACATA 58.732 43.478 19.62 0.54 42.38 2.29
5118 5278 7.716123 AGAAGAGAAAAATCATGATAGGAGCAG 59.284 37.037 9.04 0.00 0.00 4.24
5148 5308 2.487372 TGATTCGCATGCTTGTGCTTAA 59.513 40.909 17.13 0.00 42.88 1.85
5165 5325 8.655935 ACCCACTCTTCTTTCAATATTTGATT 57.344 30.769 0.00 0.00 39.84 2.57
5186 5346 1.628846 GTGCCCTCTCTTCTTTACCCA 59.371 52.381 0.00 0.00 0.00 4.51
5191 5351 0.695347 CAGGGTGCCCTCTCTTCTTT 59.305 55.000 6.84 0.00 46.28 2.52
5192 5352 0.178891 TCAGGGTGCCCTCTCTTCTT 60.179 55.000 6.84 0.00 46.28 2.52
5193 5353 0.178891 TTCAGGGTGCCCTCTCTTCT 60.179 55.000 6.84 0.00 46.28 2.85
5194 5354 0.035915 GTTCAGGGTGCCCTCTCTTC 60.036 60.000 6.84 0.00 46.28 2.87
5195 5355 0.474660 AGTTCAGGGTGCCCTCTCTT 60.475 55.000 6.84 0.00 46.28 2.85
5196 5356 0.907230 GAGTTCAGGGTGCCCTCTCT 60.907 60.000 6.84 6.01 46.28 3.10
5197 5357 1.194781 TGAGTTCAGGGTGCCCTCTC 61.195 60.000 6.84 11.49 46.28 3.20
5198 5358 0.548682 ATGAGTTCAGGGTGCCCTCT 60.549 55.000 6.84 1.53 46.28 3.69
5199 5359 0.393537 CATGAGTTCAGGGTGCCCTC 60.394 60.000 6.84 0.00 46.28 4.30
5201 5361 1.379044 CCATGAGTTCAGGGTGCCC 60.379 63.158 4.70 0.00 42.43 5.36
5202 5362 1.379044 CCCATGAGTTCAGGGTGCC 60.379 63.158 11.44 0.00 45.66 5.01
5203 5363 2.048603 GCCCATGAGTTCAGGGTGC 61.049 63.158 11.44 10.30 45.66 5.01
5204 5364 0.033796 ATGCCCATGAGTTCAGGGTG 60.034 55.000 11.44 4.89 45.66 4.61
5205 5365 1.595311 TATGCCCATGAGTTCAGGGT 58.405 50.000 11.44 0.00 45.66 4.34
5206 5366 2.511659 CATATGCCCATGAGTTCAGGG 58.488 52.381 5.86 5.86 46.58 4.45
5207 5367 1.884579 GCATATGCCCATGAGTTCAGG 59.115 52.381 17.26 0.00 34.31 3.86
5208 5368 2.292569 GTGCATATGCCCATGAGTTCAG 59.707 50.000 24.54 0.00 41.18 3.02
5209 5369 2.092267 AGTGCATATGCCCATGAGTTCA 60.092 45.455 24.54 0.00 41.18 3.18
5210 5370 2.551459 GAGTGCATATGCCCATGAGTTC 59.449 50.000 24.54 2.30 41.18 3.01
5211 5371 2.092267 TGAGTGCATATGCCCATGAGTT 60.092 45.455 24.54 0.00 41.18 3.01
5212 5372 1.491754 TGAGTGCATATGCCCATGAGT 59.508 47.619 24.54 8.57 41.18 3.41
5213 5373 1.878088 GTGAGTGCATATGCCCATGAG 59.122 52.381 24.54 0.00 41.18 2.90
5214 5374 1.491754 AGTGAGTGCATATGCCCATGA 59.508 47.619 24.54 2.66 41.18 3.07
5215 5375 1.977056 AGTGAGTGCATATGCCCATG 58.023 50.000 24.54 0.00 41.18 3.66
5216 5376 2.742428 AAGTGAGTGCATATGCCCAT 57.258 45.000 24.54 10.49 41.18 4.00
5217 5377 2.512692 AAAGTGAGTGCATATGCCCA 57.487 45.000 24.54 16.19 41.18 5.36
5218 5378 2.754552 TGAAAAGTGAGTGCATATGCCC 59.245 45.455 24.54 13.97 41.18 5.36
5219 5379 4.439305 TTGAAAAGTGAGTGCATATGCC 57.561 40.909 24.54 15.47 41.18 4.40
5220 5380 6.768029 TTTTTGAAAAGTGAGTGCATATGC 57.232 33.333 21.09 21.09 42.50 3.14
5283 5443 9.289303 GAACATGTATGCGTGATATTTTCTTTT 57.711 29.630 10.22 0.00 35.65 2.27
5284 5444 7.639850 CGAACATGTATGCGTGATATTTTCTTT 59.360 33.333 10.22 0.00 35.65 2.52
5285 5445 7.125755 CGAACATGTATGCGTGATATTTTCTT 58.874 34.615 10.22 0.00 35.65 2.52
5286 5446 6.257849 ACGAACATGTATGCGTGATATTTTCT 59.742 34.615 17.06 0.00 35.44 2.52
5287 5447 6.418956 ACGAACATGTATGCGTGATATTTTC 58.581 36.000 17.06 2.14 35.44 2.29
5288 5448 6.358118 ACGAACATGTATGCGTGATATTTT 57.642 33.333 17.06 0.00 35.44 1.82
5289 5449 5.984233 ACGAACATGTATGCGTGATATTT 57.016 34.783 17.06 0.00 35.44 1.40
5290 5450 6.443792 TCTACGAACATGTATGCGTGATATT 58.556 36.000 23.25 0.00 37.56 1.28
5291 5451 6.009115 TCTACGAACATGTATGCGTGATAT 57.991 37.500 23.25 6.37 37.56 1.63
5292 5452 5.427036 TCTACGAACATGTATGCGTGATA 57.573 39.130 23.25 11.12 37.56 2.15
5293 5453 4.301637 TCTACGAACATGTATGCGTGAT 57.698 40.909 23.25 0.00 37.56 3.06
5294 5454 3.768468 TCTACGAACATGTATGCGTGA 57.232 42.857 23.25 17.27 37.56 4.35
5295 5455 3.796717 ACATCTACGAACATGTATGCGTG 59.203 43.478 23.25 15.90 37.56 5.34
5296 5456 3.796717 CACATCTACGAACATGTATGCGT 59.203 43.478 20.18 20.18 40.42 5.24
5297 5457 3.796717 ACACATCTACGAACATGTATGCG 59.203 43.478 0.00 6.45 31.78 4.73
5298 5458 4.566759 ACACACATCTACGAACATGTATGC 59.433 41.667 0.00 0.00 31.71 3.14
5299 5459 6.075572 CGTACACACATCTACGAACATGTATG 60.076 42.308 0.00 0.04 38.40 2.39
5300 5460 5.969435 CGTACACACATCTACGAACATGTAT 59.031 40.000 0.00 0.00 38.40 2.29
5301 5461 5.106594 ACGTACACACATCTACGAACATGTA 60.107 40.000 0.00 0.00 38.40 2.29
5302 5462 4.163552 CGTACACACATCTACGAACATGT 58.836 43.478 0.00 0.00 38.40 3.21
5303 5463 4.030195 CACGTACACACATCTACGAACATG 59.970 45.833 4.35 0.00 38.40 3.21
5304 5464 4.083164 TCACGTACACACATCTACGAACAT 60.083 41.667 4.35 0.00 38.40 2.71
5305 5465 3.250521 TCACGTACACACATCTACGAACA 59.749 43.478 4.35 0.00 38.40 3.18
5306 5466 3.601211 GTCACGTACACACATCTACGAAC 59.399 47.826 4.35 0.00 38.40 3.95
5307 5467 3.250521 TGTCACGTACACACATCTACGAA 59.749 43.478 4.35 0.00 38.40 3.85
5308 5468 2.807392 TGTCACGTACACACATCTACGA 59.193 45.455 4.35 0.00 38.40 3.43
5309 5469 3.191735 TGTCACGTACACACATCTACG 57.808 47.619 0.00 0.00 41.24 3.51
5319 5479 6.905544 TCATAAAACTTTGTGTCACGTACA 57.094 33.333 0.00 0.00 35.06 2.90
5320 5480 8.603983 TTTTCATAAAACTTTGTGTCACGTAC 57.396 30.769 0.00 0.00 32.07 3.67
5362 5522 7.431084 GCACTGAAATTTGTCTTTTTACGAAGA 59.569 33.333 0.00 0.00 33.44 2.87
5363 5523 7.432252 AGCACTGAAATTTGTCTTTTTACGAAG 59.568 33.333 0.00 0.00 0.00 3.79
5364 5524 7.254852 AGCACTGAAATTTGTCTTTTTACGAA 58.745 30.769 0.00 0.00 0.00 3.85
5365 5525 6.791303 AGCACTGAAATTTGTCTTTTTACGA 58.209 32.000 0.00 0.00 0.00 3.43
5366 5526 7.432252 AGAAGCACTGAAATTTGTCTTTTTACG 59.568 33.333 0.00 0.00 0.00 3.18
5367 5527 8.634475 AGAAGCACTGAAATTTGTCTTTTTAC 57.366 30.769 0.00 0.00 0.00 2.01
5369 5529 9.651913 TTTAGAAGCACTGAAATTTGTCTTTTT 57.348 25.926 0.00 0.00 0.00 1.94
5370 5530 9.822185 ATTTAGAAGCACTGAAATTTGTCTTTT 57.178 25.926 0.00 0.00 0.00 2.27
5373 5533 9.289782 ACTATTTAGAAGCACTGAAATTTGTCT 57.710 29.630 0.00 0.00 0.00 3.41
5374 5534 9.334693 CACTATTTAGAAGCACTGAAATTTGTC 57.665 33.333 0.00 0.00 0.00 3.18
5375 5535 8.850156 ACACTATTTAGAAGCACTGAAATTTGT 58.150 29.630 0.00 0.00 0.00 2.83
5376 5536 9.683069 AACACTATTTAGAAGCACTGAAATTTG 57.317 29.630 0.00 0.00 0.00 2.32
5377 5537 9.899226 GAACACTATTTAGAAGCACTGAAATTT 57.101 29.630 0.00 0.00 0.00 1.82
5378 5538 8.515414 GGAACACTATTTAGAAGCACTGAAATT 58.485 33.333 0.00 0.00 0.00 1.82
5379 5539 7.665559 TGGAACACTATTTAGAAGCACTGAAAT 59.334 33.333 0.00 0.00 0.00 2.17
5380 5540 6.995686 TGGAACACTATTTAGAAGCACTGAAA 59.004 34.615 0.00 0.00 0.00 2.69
5381 5541 6.530120 TGGAACACTATTTAGAAGCACTGAA 58.470 36.000 0.00 0.00 0.00 3.02
5382 5542 6.109156 TGGAACACTATTTAGAAGCACTGA 57.891 37.500 0.00 0.00 0.00 3.41
5399 5559 3.823873 ACAGAAAATTATGCCGTGGAACA 59.176 39.130 0.00 0.00 35.74 3.18
5400 5560 4.156008 AGACAGAAAATTATGCCGTGGAAC 59.844 41.667 0.00 0.00 0.00 3.62
5401 5561 4.331968 AGACAGAAAATTATGCCGTGGAA 58.668 39.130 0.00 0.00 0.00 3.53
5402 5562 3.950397 AGACAGAAAATTATGCCGTGGA 58.050 40.909 0.00 0.00 0.00 4.02
5403 5563 4.701956 AAGACAGAAAATTATGCCGTGG 57.298 40.909 0.00 0.00 0.00 4.94
5424 5584 5.934625 ACTTTTGTTGTGGTATGTGCAAAAA 59.065 32.000 0.00 0.00 36.05 1.94
5425 5585 5.482908 ACTTTTGTTGTGGTATGTGCAAAA 58.517 33.333 0.00 0.00 35.45 2.44
5426 5586 5.078411 ACTTTTGTTGTGGTATGTGCAAA 57.922 34.783 0.00 0.00 0.00 3.68
5427 5587 4.158579 TGACTTTTGTTGTGGTATGTGCAA 59.841 37.500 0.00 0.00 0.00 4.08
5428 5588 3.696548 TGACTTTTGTTGTGGTATGTGCA 59.303 39.130 0.00 0.00 0.00 4.57
5429 5589 4.300189 TGACTTTTGTTGTGGTATGTGC 57.700 40.909 0.00 0.00 0.00 4.57
5430 5590 7.769272 AAAATGACTTTTGTTGTGGTATGTG 57.231 32.000 0.00 0.00 33.33 3.21
5431 5591 7.494298 GGAAAAATGACTTTTGTTGTGGTATGT 59.506 33.333 0.00 0.00 37.36 2.29
5432 5592 7.306515 CGGAAAAATGACTTTTGTTGTGGTATG 60.307 37.037 0.00 0.00 37.36 2.39
5433 5593 6.699642 CGGAAAAATGACTTTTGTTGTGGTAT 59.300 34.615 0.00 0.00 37.36 2.73
5434 5594 6.037098 CGGAAAAATGACTTTTGTTGTGGTA 58.963 36.000 0.00 0.00 37.36 3.25
5435 5595 4.867608 CGGAAAAATGACTTTTGTTGTGGT 59.132 37.500 0.00 0.00 37.36 4.16
5436 5596 4.867608 ACGGAAAAATGACTTTTGTTGTGG 59.132 37.500 0.00 0.00 37.36 4.17
5437 5597 5.574830 TCACGGAAAAATGACTTTTGTTGTG 59.425 36.000 0.00 4.95 37.36 3.33
5438 5598 5.715070 TCACGGAAAAATGACTTTTGTTGT 58.285 33.333 0.00 0.00 37.36 3.32
5439 5599 6.639671 TTCACGGAAAAATGACTTTTGTTG 57.360 33.333 0.00 0.00 37.36 3.33
5440 5600 7.841915 ATTTCACGGAAAAATGACTTTTGTT 57.158 28.000 3.67 0.00 37.36 2.83
5441 5601 7.841915 AATTTCACGGAAAAATGACTTTTGT 57.158 28.000 3.67 0.00 37.36 2.83
5445 5605 8.495148 GCATAAAATTTCACGGAAAAATGACTT 58.505 29.630 0.00 0.00 35.11 3.01
5446 5606 7.655328 TGCATAAAATTTCACGGAAAAATGACT 59.345 29.630 0.00 0.00 35.11 3.41
5447 5607 7.739911 GTGCATAAAATTTCACGGAAAAATGAC 59.260 33.333 0.00 4.20 35.11 3.06
5448 5608 7.358765 CGTGCATAAAATTTCACGGAAAAATGA 60.359 33.333 17.67 0.00 45.76 2.57
5449 5609 6.731505 CGTGCATAAAATTTCACGGAAAAATG 59.268 34.615 17.67 6.59 45.76 2.32
5450 5610 6.816377 CGTGCATAAAATTTCACGGAAAAAT 58.184 32.000 17.67 0.00 45.76 1.82
5451 5611 6.204075 CGTGCATAAAATTTCACGGAAAAA 57.796 33.333 17.67 0.00 45.76 1.94
5452 5612 5.814314 CGTGCATAAAATTTCACGGAAAA 57.186 34.783 17.67 0.00 45.76 2.29
5453 5613 4.793028 TGCGTGCATAAAATTTCACGGAAA 60.793 37.500 23.36 2.25 46.84 3.13
5454 5614 3.304726 TGCGTGCATAAAATTTCACGGAA 60.305 39.130 23.36 4.93 46.84 4.30
5458 5618 6.624710 TTATGTGCGTGCATAAAATTTCAC 57.375 33.333 0.00 0.00 38.09 3.18
5465 5625 3.908978 CGTGTTTTATGTGCGTGCATAAA 59.091 39.130 16.73 16.73 44.64 1.40
5466 5626 3.186613 TCGTGTTTTATGTGCGTGCATAA 59.813 39.130 0.00 8.87 38.94 1.90
5467 5627 2.737252 TCGTGTTTTATGTGCGTGCATA 59.263 40.909 0.00 0.00 0.00 3.14
5468 5628 1.533299 TCGTGTTTTATGTGCGTGCAT 59.467 42.857 0.00 0.12 0.00 3.96
5469 5629 0.938008 TCGTGTTTTATGTGCGTGCA 59.062 45.000 0.00 0.00 0.00 4.57
5470 5630 1.969256 CTTCGTGTTTTATGTGCGTGC 59.031 47.619 0.00 0.00 0.00 5.34
5471 5631 3.513462 TCTTCGTGTTTTATGTGCGTG 57.487 42.857 0.00 0.00 0.00 5.34
5472 5632 3.496884 ACATCTTCGTGTTTTATGTGCGT 59.503 39.130 0.00 0.00 29.93 5.24
5473 5633 4.065423 ACATCTTCGTGTTTTATGTGCG 57.935 40.909 0.00 0.00 29.93 5.34
5474 5634 5.321516 GGTACATCTTCGTGTTTTATGTGC 58.678 41.667 0.00 0.00 33.90 4.57
5475 5635 5.445407 CGGGTACATCTTCGTGTTTTATGTG 60.445 44.000 0.00 0.00 33.15 3.21
5476 5636 4.628333 CGGGTACATCTTCGTGTTTTATGT 59.372 41.667 0.00 0.00 35.16 2.29
5477 5637 4.628333 ACGGGTACATCTTCGTGTTTTATG 59.372 41.667 0.00 0.00 34.40 1.90
5478 5638 4.628333 CACGGGTACATCTTCGTGTTTTAT 59.372 41.667 13.04 0.00 45.15 1.40
5479 5639 3.989167 CACGGGTACATCTTCGTGTTTTA 59.011 43.478 13.04 0.00 45.15 1.52
5480 5640 2.803956 CACGGGTACATCTTCGTGTTTT 59.196 45.455 13.04 0.00 45.15 2.43
5481 5641 2.409975 CACGGGTACATCTTCGTGTTT 58.590 47.619 13.04 0.00 45.15 2.83
5482 5642 2.074547 CACGGGTACATCTTCGTGTT 57.925 50.000 13.04 0.00 45.15 3.32
5483 5643 3.806591 CACGGGTACATCTTCGTGT 57.193 52.632 13.04 0.00 45.15 4.49
5485 5645 0.319083 TTGCACGGGTACATCTTCGT 59.681 50.000 0.00 0.00 36.19 3.85
5486 5646 1.651987 ATTGCACGGGTACATCTTCG 58.348 50.000 0.00 0.00 0.00 3.79
5487 5647 4.434713 AAAATTGCACGGGTACATCTTC 57.565 40.909 0.00 0.00 0.00 2.87
5488 5648 4.864704 AAAAATTGCACGGGTACATCTT 57.135 36.364 0.00 0.00 0.00 2.40
5537 5697 9.906660 GTACATATGAATCCACTTTGAAAAACA 57.093 29.630 10.38 0.00 0.00 2.83
5538 5698 9.353999 GGTACATATGAATCCACTTTGAAAAAC 57.646 33.333 10.38 0.00 0.00 2.43
5539 5699 8.527810 GGGTACATATGAATCCACTTTGAAAAA 58.472 33.333 10.38 0.00 0.00 1.94
5540 5700 7.148154 CGGGTACATATGAATCCACTTTGAAAA 60.148 37.037 10.38 0.00 0.00 2.29
5541 5701 6.317642 CGGGTACATATGAATCCACTTTGAAA 59.682 38.462 10.38 0.00 0.00 2.69
5542 5702 5.820423 CGGGTACATATGAATCCACTTTGAA 59.180 40.000 10.38 0.00 0.00 2.69
5543 5703 5.129650 TCGGGTACATATGAATCCACTTTGA 59.870 40.000 10.38 0.00 0.00 2.69
5544 5704 5.364778 TCGGGTACATATGAATCCACTTTG 58.635 41.667 10.38 0.00 0.00 2.77
5545 5705 5.623956 TCGGGTACATATGAATCCACTTT 57.376 39.130 10.38 0.00 0.00 2.66
5546 5706 5.825593 ATCGGGTACATATGAATCCACTT 57.174 39.130 10.38 0.00 0.00 3.16
5547 5707 5.825593 AATCGGGTACATATGAATCCACT 57.174 39.130 10.38 0.00 0.00 4.00
5548 5708 5.995282 TGAAATCGGGTACATATGAATCCAC 59.005 40.000 10.38 0.00 0.00 4.02
5549 5709 6.181206 TGAAATCGGGTACATATGAATCCA 57.819 37.500 10.38 0.00 0.00 3.41
5550 5710 6.316390 GGATGAAATCGGGTACATATGAATCC 59.684 42.308 10.38 8.19 46.86 3.01
5551 5711 6.878923 TGGATGAAATCGGGTACATATGAATC 59.121 38.462 10.38 0.00 46.86 2.52
5552 5712 6.778821 TGGATGAAATCGGGTACATATGAAT 58.221 36.000 10.38 0.00 46.86 2.57
5553 5713 6.181206 TGGATGAAATCGGGTACATATGAA 57.819 37.500 10.38 0.00 46.86 2.57
5554 5714 5.816955 TGGATGAAATCGGGTACATATGA 57.183 39.130 10.38 0.00 46.86 2.15
5555 5715 5.163723 GCATGGATGAAATCGGGTACATATG 60.164 44.000 0.00 0.00 46.86 1.78
5556 5716 4.943705 GCATGGATGAAATCGGGTACATAT 59.056 41.667 0.00 0.00 46.86 1.78
5557 5717 4.202409 TGCATGGATGAAATCGGGTACATA 60.202 41.667 0.00 0.00 46.86 2.29
5558 5718 3.149196 GCATGGATGAAATCGGGTACAT 58.851 45.455 0.00 0.00 46.86 2.29
5559 5719 2.092699 TGCATGGATGAAATCGGGTACA 60.093 45.455 0.00 0.00 46.86 2.90
5560 5720 2.290641 GTGCATGGATGAAATCGGGTAC 59.709 50.000 0.00 0.00 46.86 3.34
5561 5721 2.172505 AGTGCATGGATGAAATCGGGTA 59.827 45.455 0.00 0.00 46.86 3.69
5562 5722 1.064463 AGTGCATGGATGAAATCGGGT 60.064 47.619 0.00 0.00 46.86 5.28
5563 5723 1.605710 GAGTGCATGGATGAAATCGGG 59.394 52.381 0.00 0.00 46.86 5.14
5564 5724 1.605710 GGAGTGCATGGATGAAATCGG 59.394 52.381 0.00 0.00 46.86 4.18
5565 5725 2.547211 GAGGAGTGCATGGATGAAATCG 59.453 50.000 0.00 0.00 46.86 3.34
5566 5726 2.547211 CGAGGAGTGCATGGATGAAATC 59.453 50.000 0.00 0.00 44.55 2.17
5567 5727 2.569059 CGAGGAGTGCATGGATGAAAT 58.431 47.619 0.00 0.00 0.00 2.17
5568 5728 1.407299 CCGAGGAGTGCATGGATGAAA 60.407 52.381 0.00 0.00 0.00 2.69
5569 5729 0.178767 CCGAGGAGTGCATGGATGAA 59.821 55.000 0.00 0.00 0.00 2.57
5570 5730 1.689243 CCCGAGGAGTGCATGGATGA 61.689 60.000 0.00 0.00 0.00 2.92
5571 5731 1.227764 CCCGAGGAGTGCATGGATG 60.228 63.158 0.00 0.00 0.00 3.51
5572 5732 0.398522 TACCCGAGGAGTGCATGGAT 60.399 55.000 0.00 0.00 0.00 3.41
5573 5733 0.616395 TTACCCGAGGAGTGCATGGA 60.616 55.000 0.00 0.00 0.00 3.41
5574 5734 0.251916 TTTACCCGAGGAGTGCATGG 59.748 55.000 0.00 0.00 0.00 3.66
5575 5735 1.207089 TCTTTACCCGAGGAGTGCATG 59.793 52.381 0.00 0.00 0.00 4.06
5576 5736 1.568504 TCTTTACCCGAGGAGTGCAT 58.431 50.000 0.00 0.00 0.00 3.96
5577 5737 1.344065 TTCTTTACCCGAGGAGTGCA 58.656 50.000 0.00 0.00 0.00 4.57
5578 5738 2.074576 GTTTCTTTACCCGAGGAGTGC 58.925 52.381 0.00 0.00 0.00 4.40
5579 5739 2.696506 GGTTTCTTTACCCGAGGAGTG 58.303 52.381 0.00 0.00 31.71 3.51
5588 5748 2.089201 CCACGGATGGGTTTCTTTACC 58.911 52.381 0.00 0.00 43.04 2.85
5606 5766 2.141448 TGCCCGGACTGTACAACCA 61.141 57.895 0.73 0.00 0.00 3.67
5613 5773 3.168528 ACCTTGTGCCCGGACTGT 61.169 61.111 0.73 0.00 0.00 3.55
5662 5830 4.759782 ACGAACATGTAGCTGAGCTATTT 58.240 39.130 18.18 8.64 43.30 1.40
5671 5839 6.304126 CGAACATAAAAACGAACATGTAGCT 58.696 36.000 0.00 0.00 31.55 3.32
5673 5841 6.031003 GTGCGAACATAAAAACGAACATGTAG 59.969 38.462 0.00 0.00 34.85 2.74
5675 5843 4.673311 GTGCGAACATAAAAACGAACATGT 59.327 37.500 0.00 0.00 34.85 3.21
5676 5844 4.672862 TGTGCGAACATAAAAACGAACATG 59.327 37.500 0.00 0.00 38.99 3.21
5681 5849 3.251245 ACCATGTGCGAACATAAAAACGA 59.749 39.130 9.20 0.00 0.00 3.85
5685 5853 3.840890 GGACCATGTGCGAACATAAAA 57.159 42.857 9.20 0.00 0.00 1.52
5695 5863 2.398554 ATGTTCGCGGACCATGTGC 61.399 57.895 16.49 0.00 0.00 4.57
5698 5866 0.305617 CATCATGTTCGCGGACCATG 59.694 55.000 16.49 18.89 37.82 3.66
5699 5867 1.439353 GCATCATGTTCGCGGACCAT 61.439 55.000 16.49 7.65 0.00 3.55
5705 5873 0.807275 TCTCCTGCATCATGTTCGCG 60.807 55.000 0.00 0.00 0.00 5.87
5716 5884 4.657504 AGAATTGGATGACTATCTCCTGCA 59.342 41.667 0.00 0.00 33.68 4.41
5719 5887 7.865820 TGAAAAGAATTGGATGACTATCTCCT 58.134 34.615 0.00 0.00 33.68 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.