Multiple sequence alignment - TraesCS6A01G159300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G159300 chr6A 100.000 3172 0 0 3554 6725 151468320 151465149 0.000000e+00 5858.0
1 TraesCS6A01G159300 chr6A 100.000 2606 0 0 755 3360 151471119 151468514 0.000000e+00 4813.0
2 TraesCS6A01G159300 chr6A 100.000 447 0 0 1 447 151471873 151471427 0.000000e+00 826.0
3 TraesCS6A01G159300 chr6A 100.000 152 0 0 6893 7044 151464981 151464830 1.500000e-71 281.0
4 TraesCS6A01G159300 chr6D 93.374 2641 100 36 755 3360 127183381 127185981 0.000000e+00 3838.0
5 TraesCS6A01G159300 chr6D 98.071 1244 23 1 3554 4797 127186303 127187545 0.000000e+00 2163.0
6 TraesCS6A01G159300 chr6D 92.758 1298 66 15 4913 6205 127187544 127188818 0.000000e+00 1851.0
7 TraesCS6A01G159300 chr6D 88.189 381 30 8 1 375 127182595 127182966 2.330000e-119 440.0
8 TraesCS6A01G159300 chr6D 83.721 172 21 4 4002 4172 37715249 37715414 9.460000e-34 156.0
9 TraesCS6A01G159300 chr6D 85.065 154 20 3 6893 7044 127189534 127189686 3.400000e-33 154.0
10 TraesCS6A01G159300 chr6B 95.804 2288 74 13 1078 3360 226358015 226360285 0.000000e+00 3674.0
11 TraesCS6A01G159300 chr6B 94.511 2168 71 21 3554 5720 226360359 226362479 0.000000e+00 3301.0
12 TraesCS6A01G159300 chr6B 91.982 449 30 5 5758 6205 226362815 226363258 6.000000e-175 625.0
13 TraesCS6A01G159300 chr6B 88.300 453 43 8 1 446 226356917 226357366 1.040000e-147 534.0
14 TraesCS6A01G159300 chr6B 93.396 212 5 4 755 960 226357568 226357776 8.880000e-79 305.0
15 TraesCS6A01G159300 chr6B 84.000 75 11 1 6517 6591 62407355 62407282 3.530000e-08 71.3
16 TraesCS6A01G159300 chr4A 92.257 1059 66 9 1441 2495 669571524 669572570 0.000000e+00 1487.0
17 TraesCS6A01G159300 chr4A 98.246 228 4 0 2544 2771 669572752 669572979 3.960000e-107 399.0
18 TraesCS6A01G159300 chr5D 94.048 168 10 0 4737 4904 529218160 529218327 9.070000e-64 255.0
19 TraesCS6A01G159300 chr5D 80.851 282 44 9 2123 2399 56929252 56929528 5.530000e-51 213.0
20 TraesCS6A01G159300 chr2B 95.092 163 6 2 4743 4904 608226725 608226886 9.070000e-64 255.0
21 TraesCS6A01G159300 chr2B 94.545 165 8 1 4741 4905 366017681 366017518 3.260000e-63 254.0
22 TraesCS6A01G159300 chr2B 100.000 28 0 0 26 53 801216023 801216050 1.300000e-02 52.8
23 TraesCS6A01G159300 chr2D 94.012 167 10 0 4740 4906 134301485 134301651 3.260000e-63 254.0
24 TraesCS6A01G159300 chr2D 94.545 165 8 1 4741 4905 296364047 296364210 3.260000e-63 254.0
25 TraesCS6A01G159300 chr2D 100.000 29 0 0 25 53 167020678 167020650 4.000000e-03 54.7
26 TraesCS6A01G159300 chr7D 93.529 170 10 1 4739 4907 454079412 454079243 1.170000e-62 252.0
27 TraesCS6A01G159300 chr7D 82.589 224 27 8 3916 4137 487867417 487867630 3.350000e-43 187.0
28 TraesCS6A01G159300 chr7D 82.589 224 26 11 3916 4137 37824300 37824088 1.210000e-42 185.0
29 TraesCS6A01G159300 chr7B 91.257 183 15 1 4743 4924 490207990 490208172 1.520000e-61 248.0
30 TraesCS6A01G159300 chr7B 93.413 167 10 1 4743 4908 382332091 382331925 5.460000e-61 246.0
31 TraesCS6A01G159300 chr1B 78.209 335 56 13 2166 2495 154161005 154160683 1.550000e-46 198.0
32 TraesCS6A01G159300 chr1B 100.000 29 0 0 2220 2248 656660737 656660709 4.000000e-03 54.7
33 TraesCS6A01G159300 chr1D 82.589 224 27 8 3916 4137 90549618 90549831 3.350000e-43 187.0
34 TraesCS6A01G159300 chr3D 82.589 224 26 9 3916 4137 25372492 25372704 1.210000e-42 185.0
35 TraesCS6A01G159300 chr3D 82.258 62 9 2 26 87 49547002 49546943 1.300000e-02 52.8
36 TraesCS6A01G159300 chr5A 82.143 224 26 10 3916 4137 34849994 34849783 5.610000e-41 180.0
37 TraesCS6A01G159300 chr5A 91.111 45 4 0 20 64 687756976 687756932 2.120000e-05 62.1
38 TraesCS6A01G159300 chr1A 78.547 289 50 10 2200 2483 94111804 94112085 5.610000e-41 180.0
39 TraesCS6A01G159300 chr4D 78.238 193 24 13 3946 4137 14581281 14581106 2.690000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G159300 chr6A 151464830 151471873 7043 True 2944.5 5858 100.0000 1 7044 4 chr6A.!!$R1 7043
1 TraesCS6A01G159300 chr6D 127182595 127189686 7091 False 1689.2 3838 91.4914 1 7044 5 chr6D.!!$F2 7043
2 TraesCS6A01G159300 chr6B 226356917 226363258 6341 False 1687.8 3674 92.7986 1 6205 5 chr6B.!!$F1 6204
3 TraesCS6A01G159300 chr4A 669571524 669572979 1455 False 943.0 1487 95.2515 1441 2771 2 chr4A.!!$F1 1330

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 1012 0.036294 CAACTCCGTTCCCTCCTTCC 60.036 60.000 0.00 0.0 0.00 3.46 F
962 1014 0.252742 ACTCCGTTCCCTCCTTCCAT 60.253 55.000 0.00 0.0 0.00 3.41 F
1817 1996 0.321653 GCCGTTCAGTGGATGGTCTT 60.322 55.000 11.53 0.0 0.00 3.01 F
1864 2043 2.101582 CTGCACACAGGTAGTATCCTCC 59.898 54.545 0.00 0.0 40.48 4.30 F
1865 2044 2.292257 TGCACACAGGTAGTATCCTCCT 60.292 50.000 0.00 0.0 35.37 3.69 F
3865 4375 1.339438 TGAGCCAGATCACTTTCCAGC 60.339 52.381 0.00 0.0 0.00 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2229 0.535335 AGCCTCCTCGAAACGCAATA 59.465 50.000 0.00 0.00 0.00 1.90 R
2279 2471 2.954989 TGCCTTGTTGTTTGTGCATAGA 59.045 40.909 0.00 0.00 0.00 1.98 R
3740 4250 2.669434 CAGCCATGTAATTGCAGCAAAC 59.331 45.455 12.97 7.49 37.46 2.93 R
3865 4375 8.397575 TGGAAAGTGATCTAGCTAGTACTATG 57.602 38.462 20.10 0.00 0.00 2.23 R
4282 4793 5.281727 CAGGCTGTACTTCTTTCAAAAACC 58.718 41.667 6.28 0.00 0.00 3.27 R
6061 7017 0.104120 CACTCACCAACCAGACGACA 59.896 55.000 0.00 0.00 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
164 168 9.498307 TTTCTTTAAAGTTCACGAGCTAAAAAG 57.502 29.630 14.74 9.64 31.24 2.27
165 169 8.205131 TCTTTAAAGTTCACGAGCTAAAAAGT 57.795 30.769 14.74 0.00 31.59 2.66
166 170 9.316730 TCTTTAAAGTTCACGAGCTAAAAAGTA 57.683 29.630 14.74 0.00 31.59 2.24
167 171 9.582223 CTTTAAAGTTCACGAGCTAAAAAGTAG 57.418 33.333 7.07 0.00 0.00 2.57
169 173 7.781548 AAAGTTCACGAGCTAAAAAGTAGAA 57.218 32.000 0.00 0.00 0.00 2.10
222 229 4.023450 GGAAGTAAAGAAACAAAGGGACGG 60.023 45.833 0.00 0.00 0.00 4.79
303 310 1.077501 CCAATGGCCAGGATCACGT 60.078 57.895 13.05 0.00 0.00 4.49
360 368 1.774856 AGCCAACCCTAACTGTCAACT 59.225 47.619 0.00 0.00 0.00 3.16
361 369 2.976882 AGCCAACCCTAACTGTCAACTA 59.023 45.455 0.00 0.00 0.00 2.24
423 431 4.066139 CCCCCAGCCCCTTCCTTG 62.066 72.222 0.00 0.00 0.00 3.61
429 437 4.803908 GCCCCTTCCTTGCCTCCG 62.804 72.222 0.00 0.00 0.00 4.63
446 454 2.920636 GCCCGGCCAACCCTATAA 59.079 61.111 2.24 0.00 0.00 0.98
850 899 4.408821 TGGCCCGTAGCAGCTTGG 62.409 66.667 0.00 2.91 46.50 3.61
933 985 4.031426 GCTTTCATTCGAACGTTACTCGAT 59.969 41.667 11.26 0.65 44.25 3.59
948 1000 2.120232 CTCGATCCGATTTCAACTCCG 58.880 52.381 0.00 0.00 34.61 4.63
960 1012 0.036294 CAACTCCGTTCCCTCCTTCC 60.036 60.000 0.00 0.00 0.00 3.46
961 1013 0.473117 AACTCCGTTCCCTCCTTCCA 60.473 55.000 0.00 0.00 0.00 3.53
962 1014 0.252742 ACTCCGTTCCCTCCTTCCAT 60.253 55.000 0.00 0.00 0.00 3.41
963 1015 1.007963 ACTCCGTTCCCTCCTTCCATA 59.992 52.381 0.00 0.00 0.00 2.74
966 1018 3.120108 TCCGTTCCCTCCTTCCATATTT 58.880 45.455 0.00 0.00 0.00 1.40
967 1019 4.300345 TCCGTTCCCTCCTTCCATATTTA 58.700 43.478 0.00 0.00 0.00 1.40
968 1020 4.102054 TCCGTTCCCTCCTTCCATATTTAC 59.898 45.833 0.00 0.00 0.00 2.01
969 1021 4.102681 CCGTTCCCTCCTTCCATATTTACT 59.897 45.833 0.00 0.00 0.00 2.24
970 1022 5.298347 CGTTCCCTCCTTCCATATTTACTC 58.702 45.833 0.00 0.00 0.00 2.59
1015 1067 4.508128 TCGCTCCGATTCGCCACC 62.508 66.667 0.00 0.00 0.00 4.61
1040 1092 1.345715 CGCCCTAAACATCCCCCTCT 61.346 60.000 0.00 0.00 0.00 3.69
1055 1107 3.036959 TCTCCCTCCCCCTCTCCC 61.037 72.222 0.00 0.00 0.00 4.30
1056 1108 4.179599 CTCCCTCCCCCTCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
1287 1462 4.155733 TAGTCCGTGCCATGCCGG 62.156 66.667 0.00 0.00 41.33 6.13
1358 1534 3.686726 AGTTCTCATCCAAGAAATCGCAC 59.313 43.478 0.00 0.00 37.04 5.34
1427 1604 1.134401 TCTCAATTCGTGGGATCAGCC 60.134 52.381 0.00 0.00 28.92 4.85
1434 1611 3.645660 TGGGATCAGCCGTGCCAA 61.646 61.111 0.00 0.00 33.87 4.52
1501 1679 3.243128 CGAAGATTCGGTGGGGTTT 57.757 52.632 7.08 0.00 46.30 3.27
1565 1743 2.097466 CGTCTGTCTTTGCTGGTTTTGT 59.903 45.455 0.00 0.00 0.00 2.83
1588 1767 7.206687 TGTGTTTGCTTCTAAAAGTATTTGGG 58.793 34.615 0.00 0.00 39.02 4.12
1777 1956 0.874390 ATAACAAGCACACAGGCACG 59.126 50.000 0.00 0.00 35.83 5.34
1816 1995 1.194781 AGCCGTTCAGTGGATGGTCT 61.195 55.000 11.53 6.20 0.00 3.85
1817 1996 0.321653 GCCGTTCAGTGGATGGTCTT 60.322 55.000 11.53 0.00 0.00 3.01
1864 2043 2.101582 CTGCACACAGGTAGTATCCTCC 59.898 54.545 0.00 0.00 40.48 4.30
1865 2044 2.292257 TGCACACAGGTAGTATCCTCCT 60.292 50.000 0.00 0.00 35.37 3.69
1868 2047 3.634448 CACACAGGTAGTATCCTCCTCTG 59.366 52.174 0.00 0.00 35.37 3.35
1883 2063 4.186926 CTCCTCTGCTTCGAAATCATTCA 58.813 43.478 0.00 0.00 35.15 2.57
1884 2064 4.186926 TCCTCTGCTTCGAAATCATTCAG 58.813 43.478 0.00 0.74 35.15 3.02
1892 2072 5.675575 GCTTCGAAATCATTCAGTGCTTCAT 60.676 40.000 0.00 0.00 35.15 2.57
1908 2089 3.058224 GCTTCATCTTTGGTTGCGTACTT 60.058 43.478 0.00 0.00 0.00 2.24
1914 2095 7.745015 TCATCTTTGGTTGCGTACTTAATTAC 58.255 34.615 0.00 0.00 0.00 1.89
2034 2222 9.273016 CCTGAATCTTGTTTCTGTAGTTTCTTA 57.727 33.333 0.00 0.00 0.00 2.10
2039 2227 7.871853 TCTTGTTTCTGTAGTTTCTTATTGGC 58.128 34.615 0.00 0.00 0.00 4.52
2040 2228 7.719633 TCTTGTTTCTGTAGTTTCTTATTGGCT 59.280 33.333 0.00 0.00 0.00 4.75
2041 2229 7.817418 TGTTTCTGTAGTTTCTTATTGGCTT 57.183 32.000 0.00 0.00 0.00 4.35
2042 2230 8.911918 TGTTTCTGTAGTTTCTTATTGGCTTA 57.088 30.769 0.00 0.00 0.00 3.09
2156 2346 6.190587 AGGAAATTTTCTTATGGGGAGACAG 58.809 40.000 8.93 0.00 0.00 3.51
2194 2384 4.672587 TCGAAGGAATGGACCATAAGAG 57.327 45.455 7.59 0.00 0.00 2.85
2206 2396 3.780850 GACCATAAGAGAAGGGGAGGAAA 59.219 47.826 0.00 0.00 0.00 3.13
2401 2593 6.656693 AGGATCACTGTGTTTTTCCTATTCAG 59.343 38.462 16.70 0.00 31.93 3.02
2915 3284 2.996631 AGGCAGGAAGATGATTCACAC 58.003 47.619 0.00 0.00 0.00 3.82
2944 3313 2.560542 CTCCCGAAGATCCTGTGGATAG 59.439 54.545 0.00 0.00 43.27 2.08
3628 4138 7.171678 AGCGGCAAGTAAATTCTAGATAATCAC 59.828 37.037 1.45 0.00 0.00 3.06
3740 4250 8.818622 ATTCACCATTATATTGGGATGATCAG 57.181 34.615 16.18 0.00 41.35 2.90
3784 4294 3.735746 GTGTGAGTTTTGGCTTTGTATGC 59.264 43.478 0.00 0.00 0.00 3.14
3865 4375 1.339438 TGAGCCAGATCACTTTCCAGC 60.339 52.381 0.00 0.00 0.00 4.85
3910 4420 9.945904 CTTTCCAGGATAGTACTAAAGAAAACT 57.054 33.333 6.70 0.00 0.00 2.66
4034 4545 7.093814 CCATCAAGTTGTCTTATCCAAATTCCA 60.094 37.037 2.11 0.00 28.60 3.53
4226 4737 3.777106 TCTTCCAGATCTGCTTTGTGT 57.223 42.857 17.76 0.00 0.00 3.72
4752 5263 6.387192 TTGATTTCATTTCTACTCCCTCCA 57.613 37.500 0.00 0.00 0.00 3.86
4800 5311 8.361139 AGAGATTTCAATAAGGACTACATACGG 58.639 37.037 0.00 0.00 0.00 4.02
4801 5312 8.246430 AGATTTCAATAAGGACTACATACGGA 57.754 34.615 0.00 0.00 0.00 4.69
4802 5313 8.871125 AGATTTCAATAAGGACTACATACGGAT 58.129 33.333 0.00 0.00 0.00 4.18
4803 5314 8.833231 ATTTCAATAAGGACTACATACGGATG 57.167 34.615 5.94 5.94 39.16 3.51
4805 5316 8.467963 TTCAATAAGGACTACATACGGATGTA 57.532 34.615 19.32 19.32 44.77 2.29
4806 5317 8.645814 TCAATAAGGACTACATACGGATGTAT 57.354 34.615 20.64 11.04 45.42 2.29
4807 5318 9.743581 TCAATAAGGACTACATACGGATGTATA 57.256 33.333 20.64 10.32 45.42 1.47
4812 5323 8.961294 AGGACTACATACGGATGTATATAGAC 57.039 38.462 20.64 10.95 45.42 2.59
4813 5324 8.546322 AGGACTACATACGGATGTATATAGACA 58.454 37.037 20.64 2.07 45.42 3.41
4814 5325 9.339850 GGACTACATACGGATGTATATAGACAT 57.660 37.037 20.64 12.70 45.42 3.06
4845 5356 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4846 5357 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4847 5358 5.412594 GTGTAGATTCACTCATTTTGCTCCA 59.587 40.000 0.00 0.00 35.68 3.86
4848 5359 6.094603 GTGTAGATTCACTCATTTTGCTCCAT 59.905 38.462 0.00 0.00 35.68 3.41
4849 5360 7.280876 GTGTAGATTCACTCATTTTGCTCCATA 59.719 37.037 0.00 0.00 35.68 2.74
4850 5361 7.994911 TGTAGATTCACTCATTTTGCTCCATAT 59.005 33.333 0.00 0.00 0.00 1.78
4851 5362 7.273320 AGATTCACTCATTTTGCTCCATATG 57.727 36.000 0.00 0.00 0.00 1.78
4852 5363 6.832384 AGATTCACTCATTTTGCTCCATATGT 59.168 34.615 1.24 0.00 0.00 2.29
4853 5364 7.994911 AGATTCACTCATTTTGCTCCATATGTA 59.005 33.333 1.24 0.00 0.00 2.29
4854 5365 7.558161 TTCACTCATTTTGCTCCATATGTAG 57.442 36.000 1.24 0.00 0.00 2.74
4855 5366 6.653020 TCACTCATTTTGCTCCATATGTAGT 58.347 36.000 1.24 0.00 0.00 2.73
4856 5367 6.763135 TCACTCATTTTGCTCCATATGTAGTC 59.237 38.462 1.24 0.00 0.00 2.59
4857 5368 6.017605 CACTCATTTTGCTCCATATGTAGTCC 60.018 42.308 1.24 0.00 0.00 3.85
4858 5369 5.056480 TCATTTTGCTCCATATGTAGTCCG 58.944 41.667 1.24 0.00 0.00 4.79
4859 5370 2.526304 TTGCTCCATATGTAGTCCGC 57.474 50.000 1.24 0.00 0.00 5.54
4860 5371 1.408969 TGCTCCATATGTAGTCCGCA 58.591 50.000 1.24 0.00 0.00 5.69
4861 5372 1.970640 TGCTCCATATGTAGTCCGCAT 59.029 47.619 1.24 0.00 0.00 4.73
4862 5373 2.368548 TGCTCCATATGTAGTCCGCATT 59.631 45.455 1.24 0.00 0.00 3.56
4863 5374 2.738846 GCTCCATATGTAGTCCGCATTG 59.261 50.000 1.24 0.00 0.00 2.82
4864 5375 3.554960 GCTCCATATGTAGTCCGCATTGA 60.555 47.826 1.24 0.00 0.00 2.57
4865 5376 4.240888 CTCCATATGTAGTCCGCATTGAG 58.759 47.826 1.24 0.00 0.00 3.02
4866 5377 3.895041 TCCATATGTAGTCCGCATTGAGA 59.105 43.478 1.24 0.00 0.00 3.27
4867 5378 4.528206 TCCATATGTAGTCCGCATTGAGAT 59.472 41.667 1.24 0.00 0.00 2.75
4868 5379 4.867047 CCATATGTAGTCCGCATTGAGATC 59.133 45.833 1.24 0.00 0.00 2.75
4869 5380 5.337089 CCATATGTAGTCCGCATTGAGATCT 60.337 44.000 0.00 0.00 0.00 2.75
4870 5381 3.717400 TGTAGTCCGCATTGAGATCTC 57.283 47.619 16.21 16.21 0.00 2.75
4871 5382 3.291584 TGTAGTCCGCATTGAGATCTCT 58.708 45.455 22.95 1.16 0.00 3.10
4872 5383 4.461198 TGTAGTCCGCATTGAGATCTCTA 58.539 43.478 22.95 16.42 0.00 2.43
4873 5384 4.887655 TGTAGTCCGCATTGAGATCTCTAA 59.112 41.667 22.95 15.32 0.00 2.10
4874 5385 5.359860 TGTAGTCCGCATTGAGATCTCTAAA 59.640 40.000 22.95 10.81 0.00 1.85
4875 5386 5.344743 AGTCCGCATTGAGATCTCTAAAA 57.655 39.130 22.95 10.10 0.00 1.52
4876 5387 5.734720 AGTCCGCATTGAGATCTCTAAAAA 58.265 37.500 22.95 9.74 0.00 1.94
4877 5388 5.814705 AGTCCGCATTGAGATCTCTAAAAAG 59.185 40.000 22.95 8.01 0.00 2.27
4878 5389 5.812642 GTCCGCATTGAGATCTCTAAAAAGA 59.187 40.000 22.95 10.78 0.00 2.52
4879 5390 5.812642 TCCGCATTGAGATCTCTAAAAAGAC 59.187 40.000 22.95 5.21 0.00 3.01
4880 5391 5.814705 CCGCATTGAGATCTCTAAAAAGACT 59.185 40.000 22.95 0.00 0.00 3.24
4881 5392 6.314896 CCGCATTGAGATCTCTAAAAAGACTT 59.685 38.462 22.95 0.00 0.00 3.01
4882 5393 7.397970 CGCATTGAGATCTCTAAAAAGACTTC 58.602 38.462 22.95 0.00 0.00 3.01
4883 5394 7.277539 CGCATTGAGATCTCTAAAAAGACTTCT 59.722 37.037 22.95 0.00 0.00 2.85
4884 5395 9.593134 GCATTGAGATCTCTAAAAAGACTTCTA 57.407 33.333 22.95 0.00 0.00 2.10
4894 5405 9.813080 CTCTAAAAAGACTTCTATTTTGGAACG 57.187 33.333 0.00 0.00 34.53 3.95
4895 5406 8.780249 TCTAAAAAGACTTCTATTTTGGAACGG 58.220 33.333 0.00 0.00 32.78 4.44
4896 5407 7.576861 AAAAAGACTTCTATTTTGGAACGGA 57.423 32.000 0.00 0.00 0.00 4.69
4897 5408 6.803154 AAAGACTTCTATTTTGGAACGGAG 57.197 37.500 0.00 0.00 0.00 4.63
4898 5409 4.833390 AGACTTCTATTTTGGAACGGAGG 58.167 43.478 0.00 0.00 0.00 4.30
4899 5410 3.939592 GACTTCTATTTTGGAACGGAGGG 59.060 47.826 0.00 0.00 0.00 4.30
4900 5411 3.585732 ACTTCTATTTTGGAACGGAGGGA 59.414 43.478 0.00 0.00 0.00 4.20
4901 5412 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
4902 5413 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
4903 5414 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
4904 5415 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
4905 5416 4.586306 ATTTTGGAACGGAGGGAGTATT 57.414 40.909 0.00 0.00 0.00 1.89
4906 5417 3.622166 TTTGGAACGGAGGGAGTATTC 57.378 47.619 0.00 0.00 0.00 1.75
4907 5418 2.241281 TGGAACGGAGGGAGTATTCA 57.759 50.000 0.00 0.00 0.00 2.57
4908 5419 2.108168 TGGAACGGAGGGAGTATTCAG 58.892 52.381 0.00 0.00 0.00 3.02
4909 5420 1.202545 GGAACGGAGGGAGTATTCAGC 60.203 57.143 0.00 0.00 0.00 4.26
4910 5421 1.480954 GAACGGAGGGAGTATTCAGCA 59.519 52.381 0.00 0.00 0.00 4.41
4911 5422 1.794714 ACGGAGGGAGTATTCAGCAT 58.205 50.000 0.00 0.00 0.00 3.79
5174 5802 3.562397 GGCATCCGACCCTACAAAA 57.438 52.632 0.00 0.00 0.00 2.44
5372 6000 3.833559 AACCCATTCTGTTGGAGGAAT 57.166 42.857 0.00 0.00 39.25 3.01
5508 6136 7.851387 GGCTTTATTATTCTGCCTACTATCC 57.149 40.000 0.00 0.00 40.36 2.59
5513 6141 5.916661 TTATTCTGCCTACTATCCCGATC 57.083 43.478 0.00 0.00 0.00 3.69
5720 6377 4.216472 TGACTGACTGATCACTACACAGAC 59.784 45.833 13.14 9.39 35.85 3.51
5722 6649 4.584743 ACTGACTGATCACTACACAGACAA 59.415 41.667 13.14 0.00 36.39 3.18
5731 6658 8.236586 TGATCACTACACAGACAAAATTTATGC 58.763 33.333 0.00 0.00 0.00 3.14
5732 6659 7.503521 TCACTACACAGACAAAATTTATGCA 57.496 32.000 0.00 0.00 0.00 3.96
5754 6681 3.863142 ATTGCTGAAAATCTGCCACTC 57.137 42.857 6.75 0.00 40.10 3.51
5832 6787 0.388520 CGATGACACGCCACTTGAGA 60.389 55.000 0.00 0.00 0.00 3.27
5915 6870 6.879276 TCTCTGAACCTCGGTATAGTATTG 57.121 41.667 0.00 0.00 0.00 1.90
5995 6950 7.227049 TGAGGCGTGATATATGATTCTTGTA 57.773 36.000 0.00 0.00 0.00 2.41
5997 6952 8.314021 TGAGGCGTGATATATGATTCTTGTATT 58.686 33.333 0.00 0.00 0.00 1.89
6061 7017 1.537990 GCCACGATTGTTTGCCTGTTT 60.538 47.619 0.00 0.00 0.00 2.83
6064 7020 2.788786 CACGATTGTTTGCCTGTTTGTC 59.211 45.455 0.00 0.00 0.00 3.18
6089 7045 0.868406 GTTGGTGAGTGAAAGCGAGG 59.132 55.000 0.00 0.00 0.00 4.63
6102 7058 1.883084 GCGAGGCGTGGGAATACTG 60.883 63.158 0.00 0.00 0.00 2.74
6105 7061 2.252072 GAGGCGTGGGAATACTGGCA 62.252 60.000 0.00 0.00 0.00 4.92
6140 7096 4.389576 GCTGTTGGAGTTGCGGCG 62.390 66.667 0.51 0.51 0.00 6.46
6162 7118 4.088638 CGATAACGCTATGATTTGTCTCCG 59.911 45.833 0.00 0.00 0.00 4.63
6164 7120 0.861837 CGCTATGATTTGTCTCCGCC 59.138 55.000 0.00 0.00 0.00 6.13
6210 7190 6.442541 TCCTTATGTTTGTCAGAGGGTAAA 57.557 37.500 0.00 0.00 36.19 2.01
6251 7231 6.849151 AGGGACTTTTAGGACACTAAATTGT 58.151 36.000 1.27 4.21 45.72 2.71
6252 7232 7.295340 AGGGACTTTTAGGACACTAAATTGTT 58.705 34.615 1.27 0.00 45.72 2.83
6253 7233 7.447545 AGGGACTTTTAGGACACTAAATTGTTC 59.552 37.037 1.27 3.40 45.72 3.18
6254 7234 7.447545 GGGACTTTTAGGACACTAAATTGTTCT 59.552 37.037 1.27 0.00 45.72 3.01
6268 7248 8.966868 ACTAAATTGTTCTTTGTTCTTCTCCAA 58.033 29.630 0.00 0.00 0.00 3.53
6274 7254 8.287439 TGTTCTTTGTTCTTCTCCAACAATTA 57.713 30.769 0.00 0.00 42.04 1.40
6288 7268 9.640952 TCTCCAACAATTATCCTATTTTTAGGG 57.359 33.333 0.00 0.00 37.81 3.53
6289 7269 9.421399 CTCCAACAATTATCCTATTTTTAGGGT 57.579 33.333 0.00 0.00 37.81 4.34
6307 7287 9.933723 TTTTAGGGTACTCAGTCATACTAAAAC 57.066 33.333 0.00 0.00 35.48 2.43
6309 7289 7.171630 AGGGTACTCAGTCATACTAAAACAG 57.828 40.000 0.00 0.00 0.00 3.16
6319 7299 6.653740 AGTCATACTAAAACAGCCAAACTACC 59.346 38.462 0.00 0.00 0.00 3.18
6320 7300 5.941647 TCATACTAAAACAGCCAAACTACCC 59.058 40.000 0.00 0.00 0.00 3.69
6321 7301 3.493334 ACTAAAACAGCCAAACTACCCC 58.507 45.455 0.00 0.00 0.00 4.95
6322 7302 1.712056 AAAACAGCCAAACTACCCCC 58.288 50.000 0.00 0.00 0.00 5.40
6323 7303 0.857675 AAACAGCCAAACTACCCCCT 59.142 50.000 0.00 0.00 0.00 4.79
6324 7304 0.404426 AACAGCCAAACTACCCCCTC 59.596 55.000 0.00 0.00 0.00 4.30
6325 7305 1.303282 CAGCCAAACTACCCCCTCC 59.697 63.158 0.00 0.00 0.00 4.30
6326 7306 2.271173 GCCAAACTACCCCCTCCG 59.729 66.667 0.00 0.00 0.00 4.63
6327 7307 2.599757 GCCAAACTACCCCCTCCGT 61.600 63.158 0.00 0.00 0.00 4.69
6328 7308 1.266867 GCCAAACTACCCCCTCCGTA 61.267 60.000 0.00 0.00 0.00 4.02
6329 7309 1.278537 CCAAACTACCCCCTCCGTAA 58.721 55.000 0.00 0.00 0.00 3.18
6330 7310 1.629861 CCAAACTACCCCCTCCGTAAA 59.370 52.381 0.00 0.00 0.00 2.01
6331 7311 2.040145 CCAAACTACCCCCTCCGTAAAA 59.960 50.000 0.00 0.00 0.00 1.52
6332 7312 3.498301 CCAAACTACCCCCTCCGTAAAAA 60.498 47.826 0.00 0.00 0.00 1.94
6377 7357 5.950023 ACTAAATAGTGATCTACGGAGGGA 58.050 41.667 0.00 0.00 34.72 4.20
6378 7358 6.005198 ACTAAATAGTGATCTACGGAGGGAG 58.995 44.000 0.00 0.00 34.72 4.30
6379 7359 4.456662 AATAGTGATCTACGGAGGGAGT 57.543 45.455 0.00 0.00 0.00 3.85
6380 7360 5.579753 AATAGTGATCTACGGAGGGAGTA 57.420 43.478 0.00 0.00 0.00 2.59
6381 7361 3.211718 AGTGATCTACGGAGGGAGTAC 57.788 52.381 0.00 0.00 0.00 2.73
6382 7362 2.778850 AGTGATCTACGGAGGGAGTACT 59.221 50.000 0.00 0.00 0.00 2.73
6383 7363 3.202595 AGTGATCTACGGAGGGAGTACTT 59.797 47.826 0.00 0.00 0.00 2.24
6384 7364 3.315749 GTGATCTACGGAGGGAGTACTTG 59.684 52.174 0.00 0.00 0.00 3.16
6385 7365 3.201487 TGATCTACGGAGGGAGTACTTGA 59.799 47.826 0.00 0.00 0.00 3.02
6386 7366 3.947612 TCTACGGAGGGAGTACTTGAT 57.052 47.619 0.00 0.00 0.00 2.57
6387 7367 3.818180 TCTACGGAGGGAGTACTTGATC 58.182 50.000 0.00 0.00 0.00 2.92
6388 7368 1.390565 ACGGAGGGAGTACTTGATCG 58.609 55.000 0.00 1.13 0.00 3.69
6396 7376 2.286294 GGAGTACTTGATCGCATTGCAG 59.714 50.000 9.69 0.33 0.00 4.41
6407 7387 2.166254 TCGCATTGCAGACTCATCACTA 59.834 45.455 9.69 0.00 0.00 2.74
6411 7391 4.201792 GCATTGCAGACTCATCACTACAAG 60.202 45.833 3.15 0.00 0.00 3.16
6428 7408 9.023962 TCACTACAAGCTTCCAAATATTCAAAT 57.976 29.630 0.00 0.00 0.00 2.32
6429 7409 9.079833 CACTACAAGCTTCCAAATATTCAAATG 57.920 33.333 0.00 0.00 0.00 2.32
6432 7412 7.099120 ACAAGCTTCCAAATATTCAAATGTCC 58.901 34.615 0.00 0.00 0.00 4.02
6433 7413 6.855763 AGCTTCCAAATATTCAAATGTCCA 57.144 33.333 0.00 0.00 0.00 4.02
6434 7414 7.243604 AGCTTCCAAATATTCAAATGTCCAA 57.756 32.000 0.00 0.00 0.00 3.53
6435 7415 7.678837 AGCTTCCAAATATTCAAATGTCCAAA 58.321 30.769 0.00 0.00 0.00 3.28
6436 7416 7.603784 AGCTTCCAAATATTCAAATGTCCAAAC 59.396 33.333 0.00 0.00 0.00 2.93
6437 7417 7.411804 GCTTCCAAATATTCAAATGTCCAAACG 60.412 37.037 0.00 0.00 0.00 3.60
6438 7418 6.987386 TCCAAATATTCAAATGTCCAAACGT 58.013 32.000 0.00 0.00 0.00 3.99
6439 7419 7.437748 TCCAAATATTCAAATGTCCAAACGTT 58.562 30.769 0.00 0.00 36.14 3.99
6440 7420 7.596995 TCCAAATATTCAAATGTCCAAACGTTC 59.403 33.333 0.00 0.00 33.42 3.95
6441 7421 7.410300 CCAAATATTCAAATGTCCAAACGTTCG 60.410 37.037 0.00 0.00 33.42 3.95
6442 7422 4.822036 ATTCAAATGTCCAAACGTTCGA 57.178 36.364 0.00 0.00 33.42 3.71
6443 7423 4.617808 TTCAAATGTCCAAACGTTCGAA 57.382 36.364 0.00 0.00 33.42 3.71
6444 7424 3.942739 TCAAATGTCCAAACGTTCGAAC 58.057 40.909 18.47 18.47 33.42 3.95
6445 7425 3.623960 TCAAATGTCCAAACGTTCGAACT 59.376 39.130 24.80 10.19 33.42 3.01
6446 7426 4.095185 TCAAATGTCCAAACGTTCGAACTT 59.905 37.500 24.80 14.17 33.42 2.66
6447 7427 5.293814 TCAAATGTCCAAACGTTCGAACTTA 59.706 36.000 24.80 1.02 33.42 2.24
6467 7447 9.628746 GAACTTACAAACTTCCAAACAGTTTTA 57.371 29.630 0.00 0.00 41.58 1.52
6468 7448 9.984190 AACTTACAAACTTCCAAACAGTTTTAA 57.016 25.926 0.00 0.00 41.58 1.52
6469 7449 9.984190 ACTTACAAACTTCCAAACAGTTTTAAA 57.016 25.926 0.00 0.00 41.58 1.52
6471 7451 9.760077 TTACAAACTTCCAAACAGTTTTAAACA 57.240 25.926 10.60 0.00 41.58 2.83
6474 7454 6.902224 ACTTCCAAACAGTTTTAAACATGC 57.098 33.333 10.60 0.00 0.00 4.06
6475 7455 6.402222 ACTTCCAAACAGTTTTAAACATGCA 58.598 32.000 10.60 0.00 0.00 3.96
6476 7456 6.876257 ACTTCCAAACAGTTTTAAACATGCAA 59.124 30.769 10.60 0.00 0.00 4.08
6477 7457 6.654793 TCCAAACAGTTTTAAACATGCAAC 57.345 33.333 10.60 0.00 0.00 4.17
6479 7459 5.289675 CCAAACAGTTTTAAACATGCAACGA 59.710 36.000 10.60 0.00 0.00 3.85
6480 7460 6.019156 CCAAACAGTTTTAAACATGCAACGAT 60.019 34.615 10.60 0.00 0.00 3.73
6481 7461 6.747659 AACAGTTTTAAACATGCAACGATC 57.252 33.333 10.60 0.00 0.00 3.69
6482 7462 6.072112 ACAGTTTTAAACATGCAACGATCT 57.928 33.333 10.60 0.00 0.00 2.75
6486 7466 7.059488 CAGTTTTAAACATGCAACGATCTACAC 59.941 37.037 10.60 0.00 0.00 2.90
6487 7467 3.722555 AAACATGCAACGATCTACACG 57.277 42.857 0.00 0.00 0.00 4.49
6488 7468 0.999406 ACATGCAACGATCTACACGC 59.001 50.000 0.00 0.00 0.00 5.34
6490 7470 1.752501 ATGCAACGATCTACACGCGC 61.753 55.000 5.73 0.00 34.61 6.86
6492 7472 1.951181 GCAACGATCTACACGCGCAA 61.951 55.000 5.73 0.00 34.33 4.85
6493 7473 0.436913 CAACGATCTACACGCGCAAA 59.563 50.000 5.73 0.00 0.00 3.68
6495 7475 0.665068 ACGATCTACACGCGCAAACA 60.665 50.000 5.73 0.00 0.00 2.83
6496 7476 0.645355 CGATCTACACGCGCAAACAT 59.355 50.000 5.73 0.00 0.00 2.71
6498 7478 2.694043 GATCTACACGCGCAAACATTC 58.306 47.619 5.73 0.00 0.00 2.67
6499 7479 1.503294 TCTACACGCGCAAACATTCA 58.497 45.000 5.73 0.00 0.00 2.57
6500 7480 1.867865 TCTACACGCGCAAACATTCAA 59.132 42.857 5.73 0.00 0.00 2.69
6501 7481 2.288186 TCTACACGCGCAAACATTCAAA 59.712 40.909 5.73 0.00 0.00 2.69
6503 7483 2.468831 ACACGCGCAAACATTCAAATT 58.531 38.095 5.73 0.00 0.00 1.82
6505 7485 4.045104 ACACGCGCAAACATTCAAATTTA 58.955 34.783 5.73 0.00 0.00 1.40
6506 7486 4.504461 ACACGCGCAAACATTCAAATTTAA 59.496 33.333 5.73 0.00 0.00 1.52
6507 7487 5.005779 ACACGCGCAAACATTCAAATTTAAA 59.994 32.000 5.73 0.00 0.00 1.52
6508 7488 5.333107 CACGCGCAAACATTCAAATTTAAAC 59.667 36.000 5.73 0.00 0.00 2.01
6511 7491 7.096023 ACGCGCAAACATTCAAATTTAAACATA 60.096 29.630 5.73 0.00 0.00 2.29
6512 7492 7.211678 CGCGCAAACATTCAAATTTAAACATAC 59.788 33.333 8.75 0.00 0.00 2.39
6513 7493 8.220434 GCGCAAACATTCAAATTTAAACATACT 58.780 29.630 0.30 0.00 0.00 2.12
6534 7618 9.557338 CATACTAGACTACAAACACTAGACAAC 57.443 37.037 0.00 0.00 36.72 3.32
6539 7623 7.873910 AGACTACAAACACTAGACAACTACTC 58.126 38.462 0.00 0.00 0.00 2.59
6543 7627 5.597182 ACAAACACTAGACAACTACTCCTCA 59.403 40.000 0.00 0.00 0.00 3.86
6555 7639 0.814457 ACTCCTCATCACTCTCACGC 59.186 55.000 0.00 0.00 0.00 5.34
6556 7640 0.813821 CTCCTCATCACTCTCACGCA 59.186 55.000 0.00 0.00 0.00 5.24
6557 7641 0.528017 TCCTCATCACTCTCACGCAC 59.472 55.000 0.00 0.00 0.00 5.34
6558 7642 0.244721 CCTCATCACTCTCACGCACA 59.755 55.000 0.00 0.00 0.00 4.57
6560 7644 2.407090 CTCATCACTCTCACGCACAAA 58.593 47.619 0.00 0.00 0.00 2.83
6567 7651 2.987149 ACTCTCACGCACAAAGTTATCG 59.013 45.455 0.00 0.00 0.00 2.92
6571 7655 0.165944 ACGCACAAAGTTATCGCAGC 59.834 50.000 0.00 0.00 0.00 5.25
6573 7657 0.521291 GCACAAAGTTATCGCAGCCA 59.479 50.000 0.00 0.00 0.00 4.75
6575 7659 2.584791 CACAAAGTTATCGCAGCCAAC 58.415 47.619 0.00 0.00 0.00 3.77
6588 7672 2.738480 CCAACGTCGGAACCCTCA 59.262 61.111 0.00 0.00 0.00 3.86
6589 7673 1.295423 CCAACGTCGGAACCCTCAT 59.705 57.895 0.00 0.00 0.00 2.90
6591 7675 0.037697 CAACGTCGGAACCCTCATCA 60.038 55.000 0.00 0.00 0.00 3.07
6607 7691 2.093500 TCATCATTGGACTCCACCTTCG 60.093 50.000 0.00 0.00 30.78 3.79
6612 7696 0.757561 TGGACTCCACCTTCGTCACA 60.758 55.000 0.00 0.00 0.00 3.58
6623 7707 0.396435 TTCGTCACATGTGAAGGCCT 59.604 50.000 32.28 0.00 41.85 5.19
6630 7714 1.377725 ATGTGAAGGCCTTGGCTCG 60.378 57.895 26.25 0.00 37.50 5.03
6649 7892 2.168496 CGTCCTCCTTACTGTTCTCCA 58.832 52.381 0.00 0.00 0.00 3.86
6652 7895 1.204941 CCTCCTTACTGTTCTCCACCG 59.795 57.143 0.00 0.00 0.00 4.94
6656 7899 2.299297 CCTTACTGTTCTCCACCGTCTT 59.701 50.000 0.00 0.00 0.00 3.01
6657 7900 3.244112 CCTTACTGTTCTCCACCGTCTTT 60.244 47.826 0.00 0.00 0.00 2.52
6669 7912 1.359459 CCGTCTTTAAGGTGCCGAGC 61.359 60.000 0.00 0.00 0.00 5.03
6674 7917 1.401905 CTTTAAGGTGCCGAGCCAATC 59.598 52.381 0.00 0.00 0.00 2.67
6675 7918 0.326595 TTAAGGTGCCGAGCCAATCA 59.673 50.000 0.00 0.00 0.00 2.57
6678 7926 2.401766 GGTGCCGAGCCAATCAGTG 61.402 63.158 0.00 0.00 0.00 3.66
6698 7946 3.496884 GTGGTTGCATTGAAACTCGACTA 59.503 43.478 7.45 0.00 0.00 2.59
6707 7955 6.470160 CATTGAAACTCGACTAAAAGGATCG 58.530 40.000 0.00 0.00 37.20 3.69
6713 7961 4.469625 TCGACTAAAAGGATCGAGATCG 57.530 45.455 6.96 0.00 39.80 3.69
6952 8201 9.627123 ATTAGTTAGCAACTTTAGGCAATATGA 57.373 29.630 6.82 0.00 42.81 2.15
6967 8216 8.985315 AGGCAATATGAGAAATATGAAAGTGA 57.015 30.769 0.00 0.00 0.00 3.41
6984 8233 5.886960 AAGTGAGCCTAATAAGTGCAAAG 57.113 39.130 0.00 0.00 0.00 2.77
6985 8234 5.165961 AGTGAGCCTAATAAGTGCAAAGA 57.834 39.130 0.00 0.00 0.00 2.52
7016 8265 9.261180 TCTAGTGCTAGCAATATAATCAACAAC 57.739 33.333 23.80 4.82 33.32 3.32
7017 8266 9.265901 CTAGTGCTAGCAATATAATCAACAACT 57.734 33.333 23.80 11.81 0.00 3.16
7019 8268 9.613428 AGTGCTAGCAATATAATCAACAACTAA 57.387 29.630 21.29 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
200 207 4.556104 GCCGTCCCTTTGTTTCTTTACTTC 60.556 45.833 0.00 0.00 0.00 3.01
204 211 3.217681 AGCCGTCCCTTTGTTTCTTTA 57.782 42.857 0.00 0.00 0.00 1.85
255 262 9.370930 AGGATCTGATGGCAAAAATATATTGAA 57.629 29.630 0.00 0.00 0.00 2.69
272 279 2.041350 GGCCATTGGATGAGGATCTGAT 59.959 50.000 6.95 0.00 34.92 2.90
280 287 1.144298 TGATCCTGGCCATTGGATGAG 59.856 52.381 26.90 4.35 42.56 2.90
303 310 5.080337 AGAGGAAGAATATGATAGTGGCGA 58.920 41.667 0.00 0.00 0.00 5.54
339 346 2.976882 AGTTGACAGTTAGGGTTGGCTA 59.023 45.455 0.00 0.00 0.00 3.93
412 420 4.803908 CGGAGGCAAGGAAGGGGC 62.804 72.222 0.00 0.00 0.00 5.80
429 437 2.920636 TTATAGGGTTGGCCGGGC 59.079 61.111 23.42 23.42 34.97 6.13
793 842 0.178990 GGGGCAGGCCTATTTACCAG 60.179 60.000 13.81 0.00 36.10 4.00
839 888 2.694760 GCACAGGCCAAGCTGCTAC 61.695 63.158 5.01 0.00 0.00 3.58
948 1000 5.456330 GGGAGTAAATATGGAAGGAGGGAAC 60.456 48.000 0.00 0.00 0.00 3.62
1094 1267 1.214062 GCTGAGTCCTCACCTCACG 59.786 63.158 0.00 0.00 35.23 4.35
1123 1296 2.202932 CCAACGGCAGGAGATCGG 60.203 66.667 0.00 0.00 0.00 4.18
1171 1344 2.160417 CAGAGAAGGGACGCAATGAAAC 59.840 50.000 0.00 0.00 0.00 2.78
1287 1462 2.039879 ACCTGAAATACTGGGACCACAC 59.960 50.000 0.00 0.00 41.11 3.82
1294 1469 2.418746 CGTCTCCACCTGAAATACTGGG 60.419 54.545 0.00 0.00 41.11 4.45
1296 1471 2.418746 CCCGTCTCCACCTGAAATACTG 60.419 54.545 0.00 0.00 0.00 2.74
1358 1534 1.950909 TGCAACGGGGTAACAAAGAAG 59.049 47.619 0.00 0.00 39.74 2.85
1427 1604 0.032815 AACCCGGAAATTTTGGCACG 59.967 50.000 0.73 0.00 0.00 5.34
1434 1611 1.684450 AGCAACGAAACCCGGAAATTT 59.316 42.857 0.73 0.00 43.93 1.82
1501 1679 8.637196 ACAAAATCAAACCCCTAAAACAAAAA 57.363 26.923 0.00 0.00 0.00 1.94
1511 1689 3.239449 GGAGGAACAAAATCAAACCCCT 58.761 45.455 0.00 0.00 0.00 4.79
1565 1743 6.220201 GCCCAAATACTTTTAGAAGCAAACA 58.780 36.000 0.00 0.00 36.29 2.83
1588 1767 2.438868 AAGGAAAACAAGAATGGCGC 57.561 45.000 0.00 0.00 0.00 6.53
1618 1797 3.222603 ACAAGAAGGGATTGTGGTGTTC 58.777 45.455 0.00 0.00 39.36 3.18
1625 1804 9.679661 AATAAAAACAAAACAAGAAGGGATTGT 57.320 25.926 0.00 0.00 42.55 2.71
1777 1956 1.941999 GCCCAACTTCAGCAGCCATC 61.942 60.000 0.00 0.00 0.00 3.51
1816 1995 3.428452 CGTTGTAGGGCGAATCTGAGTAA 60.428 47.826 0.00 0.00 0.00 2.24
1817 1996 2.098607 CGTTGTAGGGCGAATCTGAGTA 59.901 50.000 0.00 0.00 0.00 2.59
1864 2043 4.727162 GCACTGAATGATTTCGAAGCAGAG 60.727 45.833 0.00 2.36 34.39 3.35
1865 2044 3.125829 GCACTGAATGATTTCGAAGCAGA 59.874 43.478 0.00 0.00 34.39 4.26
1868 2047 3.754188 AGCACTGAATGATTTCGAAGC 57.246 42.857 0.00 0.00 34.39 3.86
1883 2063 1.267806 CGCAACCAAAGATGAAGCACT 59.732 47.619 0.00 0.00 0.00 4.40
1884 2064 1.001378 ACGCAACCAAAGATGAAGCAC 60.001 47.619 0.00 0.00 0.00 4.40
1892 2072 5.996513 TGGTAATTAAGTACGCAACCAAAGA 59.003 36.000 6.97 0.00 32.81 2.52
1932 2114 7.273815 GCACTACGATATCAAGGAGCTATTAAC 59.726 40.741 3.12 0.00 0.00 2.01
2034 2222 2.097466 CCTCGAAACGCAATAAGCCAAT 59.903 45.455 0.00 0.00 41.38 3.16
2035 2223 1.466950 CCTCGAAACGCAATAAGCCAA 59.533 47.619 0.00 0.00 41.38 4.52
2036 2224 1.083489 CCTCGAAACGCAATAAGCCA 58.917 50.000 0.00 0.00 41.38 4.75
2037 2225 1.327764 CTCCTCGAAACGCAATAAGCC 59.672 52.381 0.00 0.00 41.38 4.35
2038 2226 1.327764 CCTCCTCGAAACGCAATAAGC 59.672 52.381 0.00 0.00 40.87 3.09
2039 2227 1.327764 GCCTCCTCGAAACGCAATAAG 59.672 52.381 0.00 0.00 0.00 1.73
2040 2228 1.066430 AGCCTCCTCGAAACGCAATAA 60.066 47.619 0.00 0.00 0.00 1.40
2041 2229 0.535335 AGCCTCCTCGAAACGCAATA 59.465 50.000 0.00 0.00 0.00 1.90
2042 2230 0.535335 TAGCCTCCTCGAAACGCAAT 59.465 50.000 0.00 0.00 0.00 3.56
2138 2327 7.466804 ACAAATACTGTCTCCCCATAAGAAAA 58.533 34.615 0.00 0.00 29.87 2.29
2156 2346 7.083875 TCCTTCGAATCAAATGGACAAATAC 57.916 36.000 0.00 0.00 0.00 1.89
2279 2471 2.954989 TGCCTTGTTGTTTGTGCATAGA 59.045 40.909 0.00 0.00 0.00 1.98
2401 2593 3.982576 AAACTGGGTGTTTGATTCGAC 57.017 42.857 0.00 0.00 46.08 4.20
2843 3212 4.365514 TTCTTCCAATGTGGCTTCAGTA 57.634 40.909 0.00 0.00 37.47 2.74
3638 4148 8.942338 TTGCGATGAACTTTCTATACTACAAT 57.058 30.769 0.00 0.00 0.00 2.71
3714 4224 9.910267 CTGATCATCCCAATATAATGGTGAATA 57.090 33.333 6.09 0.00 38.91 1.75
3740 4250 2.669434 CAGCCATGTAATTGCAGCAAAC 59.331 45.455 12.97 7.49 37.46 2.93
3865 4375 8.397575 TGGAAAGTGATCTAGCTAGTACTATG 57.602 38.462 20.10 0.00 0.00 2.23
4282 4793 5.281727 CAGGCTGTACTTCTTTCAAAAACC 58.718 41.667 6.28 0.00 0.00 3.27
4559 5070 9.941664 CAAAAATATCTTCTGACGATTAGCAAT 57.058 29.630 1.76 0.00 0.00 3.56
4823 5334 5.412594 TGGAGCAAAATGAGTGAATCTACAC 59.587 40.000 0.00 0.00 40.60 2.90
4824 5335 5.559770 TGGAGCAAAATGAGTGAATCTACA 58.440 37.500 0.00 0.00 0.00 2.74
4825 5336 6.690194 ATGGAGCAAAATGAGTGAATCTAC 57.310 37.500 0.00 0.00 0.00 2.59
4826 5337 7.994911 ACATATGGAGCAAAATGAGTGAATCTA 59.005 33.333 7.80 0.00 0.00 1.98
4827 5338 6.832384 ACATATGGAGCAAAATGAGTGAATCT 59.168 34.615 7.80 0.00 0.00 2.40
4828 5339 7.035840 ACATATGGAGCAAAATGAGTGAATC 57.964 36.000 7.80 0.00 0.00 2.52
4829 5340 7.776969 ACTACATATGGAGCAAAATGAGTGAAT 59.223 33.333 15.30 0.00 0.00 2.57
4830 5341 7.112122 ACTACATATGGAGCAAAATGAGTGAA 58.888 34.615 15.30 0.00 0.00 3.18
4831 5342 6.653020 ACTACATATGGAGCAAAATGAGTGA 58.347 36.000 15.30 0.00 0.00 3.41
4832 5343 6.017605 GGACTACATATGGAGCAAAATGAGTG 60.018 42.308 15.30 0.00 0.00 3.51
4833 5344 6.058183 GGACTACATATGGAGCAAAATGAGT 58.942 40.000 15.30 0.00 0.00 3.41
4834 5345 5.178252 CGGACTACATATGGAGCAAAATGAG 59.822 44.000 15.30 0.00 0.00 2.90
4835 5346 5.056480 CGGACTACATATGGAGCAAAATGA 58.944 41.667 15.30 0.00 0.00 2.57
4836 5347 4.319766 GCGGACTACATATGGAGCAAAATG 60.320 45.833 15.30 0.84 0.00 2.32
4837 5348 3.815401 GCGGACTACATATGGAGCAAAAT 59.185 43.478 15.30 0.00 0.00 1.82
4838 5349 3.202906 GCGGACTACATATGGAGCAAAA 58.797 45.455 15.30 0.00 0.00 2.44
4839 5350 2.169561 TGCGGACTACATATGGAGCAAA 59.830 45.455 15.30 0.00 0.00 3.68
4840 5351 1.760029 TGCGGACTACATATGGAGCAA 59.240 47.619 15.30 0.00 0.00 3.91
4841 5352 1.408969 TGCGGACTACATATGGAGCA 58.591 50.000 15.30 5.14 0.00 4.26
4842 5353 2.738846 CAATGCGGACTACATATGGAGC 59.261 50.000 15.30 7.75 0.00 4.70
4843 5354 4.021981 TCTCAATGCGGACTACATATGGAG 60.022 45.833 13.77 13.77 0.00 3.86
4844 5355 3.895041 TCTCAATGCGGACTACATATGGA 59.105 43.478 7.80 0.00 0.00 3.41
4845 5356 4.257267 TCTCAATGCGGACTACATATGG 57.743 45.455 7.80 0.00 0.00 2.74
4846 5357 5.718146 AGATCTCAATGCGGACTACATATG 58.282 41.667 0.00 0.00 0.00 1.78
4847 5358 5.714333 AGAGATCTCAATGCGGACTACATAT 59.286 40.000 24.39 0.00 0.00 1.78
4848 5359 5.073428 AGAGATCTCAATGCGGACTACATA 58.927 41.667 24.39 0.00 0.00 2.29
4849 5360 3.894427 AGAGATCTCAATGCGGACTACAT 59.106 43.478 24.39 0.00 0.00 2.29
4850 5361 3.291584 AGAGATCTCAATGCGGACTACA 58.708 45.455 24.39 0.00 0.00 2.74
4851 5362 5.440234 TTAGAGATCTCAATGCGGACTAC 57.560 43.478 24.39 0.00 0.00 2.73
4852 5363 6.465439 TTTTAGAGATCTCAATGCGGACTA 57.535 37.500 24.39 2.17 0.00 2.59
4853 5364 5.344743 TTTTAGAGATCTCAATGCGGACT 57.655 39.130 24.39 3.15 0.00 3.85
4854 5365 5.812642 TCTTTTTAGAGATCTCAATGCGGAC 59.187 40.000 24.39 0.00 0.00 4.79
4855 5366 5.812642 GTCTTTTTAGAGATCTCAATGCGGA 59.187 40.000 24.39 12.20 0.00 5.54
4856 5367 5.814705 AGTCTTTTTAGAGATCTCAATGCGG 59.185 40.000 24.39 10.24 0.00 5.69
4857 5368 6.900568 AGTCTTTTTAGAGATCTCAATGCG 57.099 37.500 24.39 8.28 0.00 4.73
4858 5369 8.491331 AGAAGTCTTTTTAGAGATCTCAATGC 57.509 34.615 24.39 0.00 0.00 3.56
4868 5379 9.813080 CGTTCCAAAATAGAAGTCTTTTTAGAG 57.187 33.333 0.00 0.00 0.00 2.43
4869 5380 8.780249 CCGTTCCAAAATAGAAGTCTTTTTAGA 58.220 33.333 0.00 0.00 0.00 2.10
4870 5381 8.780249 TCCGTTCCAAAATAGAAGTCTTTTTAG 58.220 33.333 0.00 0.00 0.00 1.85
4871 5382 8.680039 TCCGTTCCAAAATAGAAGTCTTTTTA 57.320 30.769 0.00 0.00 0.00 1.52
4872 5383 7.255486 CCTCCGTTCCAAAATAGAAGTCTTTTT 60.255 37.037 0.00 0.00 0.00 1.94
4873 5384 6.206829 CCTCCGTTCCAAAATAGAAGTCTTTT 59.793 38.462 0.00 0.00 0.00 2.27
4874 5385 5.705905 CCTCCGTTCCAAAATAGAAGTCTTT 59.294 40.000 0.00 0.00 0.00 2.52
4875 5386 5.246307 CCTCCGTTCCAAAATAGAAGTCTT 58.754 41.667 0.00 0.00 0.00 3.01
4876 5387 4.323562 CCCTCCGTTCCAAAATAGAAGTCT 60.324 45.833 0.00 0.00 0.00 3.24
4877 5388 3.939592 CCCTCCGTTCCAAAATAGAAGTC 59.060 47.826 0.00 0.00 0.00 3.01
4878 5389 3.585732 TCCCTCCGTTCCAAAATAGAAGT 59.414 43.478 0.00 0.00 0.00 3.01
4879 5390 4.192317 CTCCCTCCGTTCCAAAATAGAAG 58.808 47.826 0.00 0.00 0.00 2.85
4880 5391 3.585732 ACTCCCTCCGTTCCAAAATAGAA 59.414 43.478 0.00 0.00 0.00 2.10
4881 5392 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
4882 5393 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
4883 5394 5.190132 TGAATACTCCCTCCGTTCCAAAATA 59.810 40.000 0.00 0.00 0.00 1.40
4884 5395 4.018779 TGAATACTCCCTCCGTTCCAAAAT 60.019 41.667 0.00 0.00 0.00 1.82
4885 5396 3.328343 TGAATACTCCCTCCGTTCCAAAA 59.672 43.478 0.00 0.00 0.00 2.44
4886 5397 2.907696 TGAATACTCCCTCCGTTCCAAA 59.092 45.455 0.00 0.00 0.00 3.28
4887 5398 2.500098 CTGAATACTCCCTCCGTTCCAA 59.500 50.000 0.00 0.00 0.00 3.53
4888 5399 2.108168 CTGAATACTCCCTCCGTTCCA 58.892 52.381 0.00 0.00 0.00 3.53
4889 5400 1.202545 GCTGAATACTCCCTCCGTTCC 60.203 57.143 0.00 0.00 0.00 3.62
4890 5401 1.480954 TGCTGAATACTCCCTCCGTTC 59.519 52.381 0.00 0.00 0.00 3.95
4891 5402 1.568504 TGCTGAATACTCCCTCCGTT 58.431 50.000 0.00 0.00 0.00 4.44
4892 5403 1.794714 ATGCTGAATACTCCCTCCGT 58.205 50.000 0.00 0.00 0.00 4.69
4893 5404 3.259374 ACATATGCTGAATACTCCCTCCG 59.741 47.826 1.58 0.00 0.00 4.63
4894 5405 4.899352 ACATATGCTGAATACTCCCTCC 57.101 45.455 1.58 0.00 0.00 4.30
4895 5406 5.468072 CACAACATATGCTGAATACTCCCTC 59.532 44.000 12.98 0.00 0.00 4.30
4896 5407 5.371526 CACAACATATGCTGAATACTCCCT 58.628 41.667 12.98 0.00 0.00 4.20
4897 5408 4.516698 CCACAACATATGCTGAATACTCCC 59.483 45.833 12.98 0.00 0.00 4.30
4898 5409 5.368145 TCCACAACATATGCTGAATACTCC 58.632 41.667 12.98 0.00 0.00 3.85
4899 5410 6.925610 TTCCACAACATATGCTGAATACTC 57.074 37.500 12.98 0.00 0.00 2.59
4900 5411 7.776969 AGATTTCCACAACATATGCTGAATACT 59.223 33.333 12.98 4.41 0.00 2.12
4901 5412 7.934457 AGATTTCCACAACATATGCTGAATAC 58.066 34.615 12.98 2.65 0.00 1.89
4902 5413 8.407832 CAAGATTTCCACAACATATGCTGAATA 58.592 33.333 12.98 0.00 0.00 1.75
4903 5414 7.123098 TCAAGATTTCCACAACATATGCTGAAT 59.877 33.333 12.98 2.28 0.00 2.57
4904 5415 6.433716 TCAAGATTTCCACAACATATGCTGAA 59.566 34.615 12.98 1.69 0.00 3.02
4905 5416 5.945191 TCAAGATTTCCACAACATATGCTGA 59.055 36.000 12.98 0.00 0.00 4.26
4906 5417 6.198650 TCAAGATTTCCACAACATATGCTG 57.801 37.500 1.58 3.22 0.00 4.41
4907 5418 6.839124 TTCAAGATTTCCACAACATATGCT 57.161 33.333 1.58 0.00 0.00 3.79
4908 5419 9.754382 AATATTCAAGATTTCCACAACATATGC 57.246 29.630 1.58 0.00 0.00 3.14
5372 6000 6.862209 ACAGTAACTTTTGACAAAGCATTCA 58.138 32.000 0.10 0.00 43.03 2.57
5434 6062 1.261480 TACCCCATGCACGCAAAAAT 58.739 45.000 0.00 0.00 0.00 1.82
5508 6136 7.073883 TGAATTTATACGACTTCTACGATCGG 58.926 38.462 20.98 2.12 40.16 4.18
5513 6141 7.375280 ACACGATGAATTTATACGACTTCTACG 59.625 37.037 0.00 0.00 0.00 3.51
5695 6352 3.057245 TGTGTAGTGATCAGTCAGTCAGC 60.057 47.826 6.25 0.00 38.86 4.26
5731 6658 4.312443 AGTGGCAGATTTTCAGCAATTTG 58.688 39.130 0.00 0.00 29.77 2.32
5732 6659 4.563061 GAGTGGCAGATTTTCAGCAATTT 58.437 39.130 0.00 0.00 29.77 1.82
5754 6681 6.615088 AGAAACAGAATTGTTCCATGAATCG 58.385 36.000 0.00 0.00 46.54 3.34
5820 6775 0.179045 AACTGCTTCTCAAGTGGCGT 60.179 50.000 0.00 0.00 0.00 5.68
5832 6787 0.953727 TTGCGCATCTCAAACTGCTT 59.046 45.000 12.75 0.00 36.23 3.91
5850 6805 1.314730 CCAAGTAACCGTGCCAACTT 58.685 50.000 0.00 0.00 32.52 2.66
5915 6870 3.808728 TCATGCCTAACATACAGCCTTC 58.191 45.455 0.00 0.00 36.64 3.46
5995 6950 6.601217 GCTCTTTCCTTCCTTATGAACTCAAT 59.399 38.462 0.00 0.00 0.00 2.57
5997 6952 5.013079 TGCTCTTTCCTTCCTTATGAACTCA 59.987 40.000 0.00 0.00 0.00 3.41
6005 6960 2.915869 TCCCTGCTCTTTCCTTCCTTA 58.084 47.619 0.00 0.00 0.00 2.69
6006 6961 1.747444 TCCCTGCTCTTTCCTTCCTT 58.253 50.000 0.00 0.00 0.00 3.36
6009 6964 1.952839 GCCTTCCCTGCTCTTTCCTTC 60.953 57.143 0.00 0.00 0.00 3.46
6061 7017 0.104120 CACTCACCAACCAGACGACA 59.896 55.000 0.00 0.00 0.00 4.35
6064 7020 1.867233 CTTTCACTCACCAACCAGACG 59.133 52.381 0.00 0.00 0.00 4.18
6089 7045 1.102978 AATTGCCAGTATTCCCACGC 58.897 50.000 0.00 0.00 0.00 5.34
6102 7058 2.068519 GCCAAGCACAAGTTAATTGCC 58.931 47.619 0.00 0.00 43.15 4.52
6140 7096 4.143305 GCGGAGACAAATCATAGCGTTATC 60.143 45.833 0.00 0.00 0.00 1.75
6150 7106 1.375396 CACCGGCGGAGACAAATCA 60.375 57.895 35.78 0.00 27.25 2.57
6162 7118 2.279502 TACGATCAGCAGACACCGGC 62.280 60.000 0.00 0.00 0.00 6.13
6164 7120 0.248661 CCTACGATCAGCAGACACCG 60.249 60.000 0.00 0.00 0.00 4.94
6192 7149 7.178451 CCCTAAATTTTACCCTCTGACAAACAT 59.822 37.037 0.00 0.00 0.00 2.71
6200 7157 3.699538 GGTGCCCTAAATTTTACCCTCTG 59.300 47.826 0.00 0.00 0.00 3.35
6210 7190 3.326588 GTCCCTTTTTGGTGCCCTAAATT 59.673 43.478 2.74 0.00 29.55 1.82
6229 7209 8.392372 AGAACAATTTAGTGTCCTAAAAGTCC 57.608 34.615 0.00 0.00 44.20 3.85
6245 7225 7.610865 TGTTGGAGAAGAACAAAGAACAATTT 58.389 30.769 0.00 0.00 30.35 1.82
6248 7228 6.582677 TTGTTGGAGAAGAACAAAGAACAA 57.417 33.333 0.00 0.00 39.71 2.83
6249 7229 6.773976 ATTGTTGGAGAAGAACAAAGAACA 57.226 33.333 0.00 0.00 44.32 3.18
6250 7230 9.399403 GATAATTGTTGGAGAAGAACAAAGAAC 57.601 33.333 0.00 0.00 44.32 3.01
6251 7231 8.576442 GGATAATTGTTGGAGAAGAACAAAGAA 58.424 33.333 0.00 0.00 44.32 2.52
6252 7232 7.944554 AGGATAATTGTTGGAGAAGAACAAAGA 59.055 33.333 0.00 0.00 44.32 2.52
6253 7233 8.115490 AGGATAATTGTTGGAGAAGAACAAAG 57.885 34.615 0.00 0.00 44.32 2.77
6254 7234 9.753674 ATAGGATAATTGTTGGAGAAGAACAAA 57.246 29.630 0.00 0.00 44.32 2.83
6274 7254 7.989947 TGACTGAGTACCCTAAAAATAGGAT 57.010 36.000 3.46 0.00 39.60 3.24
6284 7264 7.147949 GCTGTTTTAGTATGACTGAGTACCCTA 60.148 40.741 0.00 0.00 0.00 3.53
6285 7265 6.351117 GCTGTTTTAGTATGACTGAGTACCCT 60.351 42.308 0.00 0.00 0.00 4.34
6287 7267 5.811100 GGCTGTTTTAGTATGACTGAGTACC 59.189 44.000 0.00 0.00 0.00 3.34
6288 7268 6.395629 TGGCTGTTTTAGTATGACTGAGTAC 58.604 40.000 0.00 0.00 0.00 2.73
6289 7269 6.599356 TGGCTGTTTTAGTATGACTGAGTA 57.401 37.500 0.00 0.00 0.00 2.59
6290 7270 5.483685 TGGCTGTTTTAGTATGACTGAGT 57.516 39.130 0.00 0.00 0.00 3.41
6291 7271 6.428159 AGTTTGGCTGTTTTAGTATGACTGAG 59.572 38.462 0.00 0.00 0.00 3.35
6292 7272 6.296026 AGTTTGGCTGTTTTAGTATGACTGA 58.704 36.000 0.00 0.00 0.00 3.41
6296 7276 5.941647 GGGTAGTTTGGCTGTTTTAGTATGA 59.058 40.000 0.00 0.00 0.00 2.15
6307 7287 1.303282 GGAGGGGGTAGTTTGGCTG 59.697 63.158 0.00 0.00 0.00 4.85
6309 7289 1.266867 TACGGAGGGGGTAGTTTGGC 61.267 60.000 0.00 0.00 0.00 4.52
6354 7334 5.950023 TCCCTCCGTAGATCACTATTTAGT 58.050 41.667 0.00 0.00 36.90 2.24
6355 7335 6.005198 ACTCCCTCCGTAGATCACTATTTAG 58.995 44.000 0.00 0.00 0.00 1.85
6356 7336 5.950023 ACTCCCTCCGTAGATCACTATTTA 58.050 41.667 0.00 0.00 0.00 1.40
6357 7337 4.805744 ACTCCCTCCGTAGATCACTATTT 58.194 43.478 0.00 0.00 0.00 1.40
6358 7338 4.456662 ACTCCCTCCGTAGATCACTATT 57.543 45.455 0.00 0.00 0.00 1.73
6359 7339 4.598373 AGTACTCCCTCCGTAGATCACTAT 59.402 45.833 0.00 0.00 0.00 2.12
6360 7340 3.972638 AGTACTCCCTCCGTAGATCACTA 59.027 47.826 0.00 0.00 0.00 2.74
6361 7341 2.778850 AGTACTCCCTCCGTAGATCACT 59.221 50.000 0.00 0.00 0.00 3.41
6362 7342 3.211718 AGTACTCCCTCCGTAGATCAC 57.788 52.381 0.00 0.00 0.00 3.06
6363 7343 3.201487 TCAAGTACTCCCTCCGTAGATCA 59.799 47.826 0.00 0.00 0.00 2.92
6364 7344 3.818180 TCAAGTACTCCCTCCGTAGATC 58.182 50.000 0.00 0.00 0.00 2.75
6365 7345 3.947612 TCAAGTACTCCCTCCGTAGAT 57.052 47.619 0.00 0.00 0.00 1.98
6366 7346 3.743584 CGATCAAGTACTCCCTCCGTAGA 60.744 52.174 0.00 0.00 0.00 2.59
6367 7347 2.548904 CGATCAAGTACTCCCTCCGTAG 59.451 54.545 0.00 0.00 0.00 3.51
6368 7348 2.569059 CGATCAAGTACTCCCTCCGTA 58.431 52.381 0.00 0.00 0.00 4.02
6369 7349 1.390565 CGATCAAGTACTCCCTCCGT 58.609 55.000 0.00 0.00 0.00 4.69
6370 7350 0.030908 GCGATCAAGTACTCCCTCCG 59.969 60.000 0.00 0.00 0.00 4.63
6371 7351 1.112113 TGCGATCAAGTACTCCCTCC 58.888 55.000 0.00 0.00 0.00 4.30
6372 7352 3.126831 CAATGCGATCAAGTACTCCCTC 58.873 50.000 0.00 0.00 0.00 4.30
6373 7353 2.743183 GCAATGCGATCAAGTACTCCCT 60.743 50.000 0.00 0.00 0.00 4.20
6374 7354 1.599542 GCAATGCGATCAAGTACTCCC 59.400 52.381 0.00 0.00 0.00 4.30
6375 7355 2.279741 TGCAATGCGATCAAGTACTCC 58.720 47.619 0.00 0.00 0.00 3.85
6376 7356 3.000724 GTCTGCAATGCGATCAAGTACTC 59.999 47.826 0.00 0.00 0.00 2.59
6377 7357 2.932614 GTCTGCAATGCGATCAAGTACT 59.067 45.455 0.00 0.00 0.00 2.73
6378 7358 2.932614 AGTCTGCAATGCGATCAAGTAC 59.067 45.455 0.00 0.00 0.00 2.73
6379 7359 3.190079 GAGTCTGCAATGCGATCAAGTA 58.810 45.455 0.00 0.00 0.00 2.24
6380 7360 2.005451 GAGTCTGCAATGCGATCAAGT 58.995 47.619 0.00 0.00 0.00 3.16
6381 7361 2.004733 TGAGTCTGCAATGCGATCAAG 58.995 47.619 0.00 0.00 0.00 3.02
6382 7362 2.097680 TGAGTCTGCAATGCGATCAA 57.902 45.000 0.00 0.00 0.00 2.57
6383 7363 2.207590 GATGAGTCTGCAATGCGATCA 58.792 47.619 0.00 2.39 0.00 2.92
6384 7364 2.033065 GTGATGAGTCTGCAATGCGATC 60.033 50.000 0.00 0.00 0.00 3.69
6385 7365 1.938577 GTGATGAGTCTGCAATGCGAT 59.061 47.619 0.00 0.00 0.00 4.58
6386 7366 1.066645 AGTGATGAGTCTGCAATGCGA 60.067 47.619 0.00 0.00 0.00 5.10
6387 7367 1.366679 AGTGATGAGTCTGCAATGCG 58.633 50.000 0.00 0.00 0.00 4.73
6388 7368 3.264947 TGTAGTGATGAGTCTGCAATGC 58.735 45.455 0.00 0.00 0.00 3.56
6396 7376 4.193826 TGGAAGCTTGTAGTGATGAGTC 57.806 45.455 2.10 0.00 0.00 3.36
6407 7387 7.099120 GGACATTTGAATATTTGGAAGCTTGT 58.901 34.615 2.10 0.00 0.00 3.16
6411 7391 7.411804 CGTTTGGACATTTGAATATTTGGAAGC 60.412 37.037 0.00 0.00 0.00 3.86
6428 7408 3.519579 TGTAAGTTCGAACGTTTGGACA 58.480 40.909 25.61 16.04 0.00 4.02
6429 7409 4.519191 TTGTAAGTTCGAACGTTTGGAC 57.481 40.909 21.48 17.98 0.00 4.02
6432 7412 5.450066 GGAAGTTTGTAAGTTCGAACGTTTG 59.550 40.000 21.48 9.40 40.87 2.93
6433 7413 5.122082 TGGAAGTTTGTAAGTTCGAACGTTT 59.878 36.000 21.48 14.11 40.87 3.60
6434 7414 4.630940 TGGAAGTTTGTAAGTTCGAACGTT 59.369 37.500 21.48 17.37 40.87 3.99
6435 7415 4.183101 TGGAAGTTTGTAAGTTCGAACGT 58.817 39.130 21.87 21.03 40.87 3.99
6436 7416 4.782252 TGGAAGTTTGTAAGTTCGAACG 57.218 40.909 21.87 0.00 40.87 3.95
6437 7417 6.316319 TGTTTGGAAGTTTGTAAGTTCGAAC 58.684 36.000 20.71 20.71 40.87 3.95
6438 7418 6.149807 ACTGTTTGGAAGTTTGTAAGTTCGAA 59.850 34.615 0.00 0.00 40.87 3.71
6439 7419 5.644636 ACTGTTTGGAAGTTTGTAAGTTCGA 59.355 36.000 0.00 0.00 40.87 3.71
6440 7420 5.875930 ACTGTTTGGAAGTTTGTAAGTTCG 58.124 37.500 0.00 0.00 40.87 3.95
6441 7421 8.528917 AAAACTGTTTGGAAGTTTGTAAGTTC 57.471 30.769 6.53 0.00 44.93 3.01
6442 7422 9.984190 TTAAAACTGTTTGGAAGTTTGTAAGTT 57.016 25.926 6.53 0.00 44.93 2.66
6443 7423 9.984190 TTTAAAACTGTTTGGAAGTTTGTAAGT 57.016 25.926 6.53 0.00 44.93 2.24
6445 7425 9.760077 TGTTTAAAACTGTTTGGAAGTTTGTAA 57.240 25.926 6.53 0.00 44.93 2.41
6446 7426 9.930693 ATGTTTAAAACTGTTTGGAAGTTTGTA 57.069 25.926 6.53 0.00 44.93 2.41
6447 7427 8.716909 CATGTTTAAAACTGTTTGGAAGTTTGT 58.283 29.630 6.53 0.00 44.93 2.83
6467 7447 2.159707 GCGTGTAGATCGTTGCATGTTT 60.160 45.455 0.00 0.00 0.00 2.83
6468 7448 1.393539 GCGTGTAGATCGTTGCATGTT 59.606 47.619 0.00 0.00 0.00 2.71
6469 7449 0.999406 GCGTGTAGATCGTTGCATGT 59.001 50.000 0.00 0.00 0.00 3.21
6470 7450 0.043907 CGCGTGTAGATCGTTGCATG 60.044 55.000 0.00 0.00 0.00 4.06
6471 7451 1.752501 GCGCGTGTAGATCGTTGCAT 61.753 55.000 8.43 0.00 34.18 3.96
6474 7454 0.436913 TTTGCGCGTGTAGATCGTTG 59.563 50.000 8.43 0.00 0.00 4.10
6475 7455 0.437295 GTTTGCGCGTGTAGATCGTT 59.563 50.000 8.43 0.00 0.00 3.85
6476 7456 0.665068 TGTTTGCGCGTGTAGATCGT 60.665 50.000 8.43 0.00 0.00 3.73
6477 7457 0.645355 ATGTTTGCGCGTGTAGATCG 59.355 50.000 8.43 0.00 0.00 3.69
6479 7459 2.073056 TGAATGTTTGCGCGTGTAGAT 58.927 42.857 8.43 0.00 0.00 1.98
6480 7460 1.503294 TGAATGTTTGCGCGTGTAGA 58.497 45.000 8.43 0.00 0.00 2.59
6481 7461 2.308347 TTGAATGTTTGCGCGTGTAG 57.692 45.000 8.43 0.00 0.00 2.74
6482 7462 2.757686 TTTGAATGTTTGCGCGTGTA 57.242 40.000 8.43 0.00 0.00 2.90
6486 7466 5.427082 TGTTTAAATTTGAATGTTTGCGCG 58.573 33.333 0.00 0.00 0.00 6.86
6487 7467 8.220434 AGTATGTTTAAATTTGAATGTTTGCGC 58.780 29.630 0.00 0.00 0.00 6.09
6506 7486 9.293404 TGTCTAGTGTTTGTAGTCTAGTATGTT 57.707 33.333 0.00 0.00 33.72 2.71
6507 7487 8.859236 TGTCTAGTGTTTGTAGTCTAGTATGT 57.141 34.615 0.00 0.00 33.72 2.29
6508 7488 9.557338 GTTGTCTAGTGTTTGTAGTCTAGTATG 57.443 37.037 0.00 0.00 33.72 2.39
6511 7491 7.820578 AGTTGTCTAGTGTTTGTAGTCTAGT 57.179 36.000 0.00 0.00 33.72 2.57
6512 7492 9.001542 AGTAGTTGTCTAGTGTTTGTAGTCTAG 57.998 37.037 0.00 0.00 33.41 2.43
6513 7493 8.915057 AGTAGTTGTCTAGTGTTTGTAGTCTA 57.085 34.615 0.00 0.00 0.00 2.59
6514 7494 7.040548 GGAGTAGTTGTCTAGTGTTTGTAGTCT 60.041 40.741 0.00 0.00 30.79 3.24
6515 7495 7.040548 AGGAGTAGTTGTCTAGTGTTTGTAGTC 60.041 40.741 0.00 0.00 30.79 2.59
6516 7496 6.776603 AGGAGTAGTTGTCTAGTGTTTGTAGT 59.223 38.462 0.00 0.00 30.79 2.73
6517 7497 7.040617 TGAGGAGTAGTTGTCTAGTGTTTGTAG 60.041 40.741 0.00 0.00 30.79 2.74
6519 7499 5.597182 TGAGGAGTAGTTGTCTAGTGTTTGT 59.403 40.000 0.00 0.00 30.79 2.83
6520 7500 6.085555 TGAGGAGTAGTTGTCTAGTGTTTG 57.914 41.667 0.00 0.00 30.79 2.93
6531 7615 4.438065 CGTGAGAGTGATGAGGAGTAGTTG 60.438 50.000 0.00 0.00 0.00 3.16
6534 7618 2.032799 GCGTGAGAGTGATGAGGAGTAG 59.967 54.545 0.00 0.00 0.00 2.57
6539 7623 0.244721 TGTGCGTGAGAGTGATGAGG 59.755 55.000 0.00 0.00 0.00 3.86
6543 7627 2.533266 ACTTTGTGCGTGAGAGTGAT 57.467 45.000 0.00 0.00 0.00 3.06
6555 7639 2.584791 GTTGGCTGCGATAACTTTGTG 58.415 47.619 0.00 0.00 0.00 3.33
6556 7640 1.196808 CGTTGGCTGCGATAACTTTGT 59.803 47.619 10.01 0.00 0.00 2.83
6557 7641 1.196808 ACGTTGGCTGCGATAACTTTG 59.803 47.619 8.11 0.75 0.00 2.77
6558 7642 1.463444 GACGTTGGCTGCGATAACTTT 59.537 47.619 8.11 0.18 0.00 2.66
6560 7644 1.076533 CGACGTTGGCTGCGATAACT 61.077 55.000 8.11 0.72 0.00 2.24
6567 7651 3.723348 GGTTCCGACGTTGGCTGC 61.723 66.667 17.75 9.01 0.00 5.25
6571 7655 0.739813 GATGAGGGTTCCGACGTTGG 60.740 60.000 16.40 16.40 0.00 3.77
6573 7657 0.902531 ATGATGAGGGTTCCGACGTT 59.097 50.000 0.00 0.00 0.00 3.99
6575 7659 1.290203 CAATGATGAGGGTTCCGACG 58.710 55.000 0.00 0.00 0.00 5.12
6588 7672 1.909302 ACGAAGGTGGAGTCCAATGAT 59.091 47.619 15.09 0.02 34.18 2.45
6589 7673 1.275291 GACGAAGGTGGAGTCCAATGA 59.725 52.381 15.09 0.00 34.18 2.57
6591 7675 1.002087 GTGACGAAGGTGGAGTCCAAT 59.998 52.381 15.09 2.38 34.18 3.16
6607 7691 0.883833 CCAAGGCCTTCACATGTGAC 59.116 55.000 27.88 16.32 39.66 3.67
6612 7696 1.377725 CGAGCCAAGGCCTTCACAT 60.378 57.895 17.29 1.29 43.17 3.21
6623 7707 0.895530 CAGTAAGGAGGACGAGCCAA 59.104 55.000 0.00 0.00 40.02 4.52
6630 7714 2.234168 GGTGGAGAACAGTAAGGAGGAC 59.766 54.545 0.00 0.00 0.00 3.85
6649 7892 0.037605 CTCGGCACCTTAAAGACGGT 60.038 55.000 0.00 0.00 0.00 4.83
6652 7895 0.321298 TGGCTCGGCACCTTAAAGAC 60.321 55.000 0.00 0.00 0.00 3.01
6656 7899 0.326595 TGATTGGCTCGGCACCTTAA 59.673 50.000 0.00 0.00 0.00 1.85
6657 7900 0.107703 CTGATTGGCTCGGCACCTTA 60.108 55.000 0.00 0.00 0.00 2.69
6674 7917 2.290367 TCGAGTTTCAATGCAACCACTG 59.710 45.455 0.00 0.00 0.00 3.66
6675 7918 2.290641 GTCGAGTTTCAATGCAACCACT 59.709 45.455 0.00 0.00 0.00 4.00
6678 7926 4.742438 TTAGTCGAGTTTCAATGCAACC 57.258 40.909 0.00 0.00 0.00 3.77
6685 7933 5.775686 TCGATCCTTTTAGTCGAGTTTCAA 58.224 37.500 0.00 0.00 39.22 2.69
6934 8183 9.403110 CATATTTCTCATATTGCCTAAAGTTGC 57.597 33.333 0.00 0.00 0.00 4.17
6943 8192 7.806960 GCTCACTTTCATATTTCTCATATTGCC 59.193 37.037 0.00 0.00 0.00 4.52
6945 8194 9.064706 AGGCTCACTTTCATATTTCTCATATTG 57.935 33.333 0.00 0.00 0.00 1.90
6967 8216 7.059156 AGAATCATCTTTGCACTTATTAGGCT 58.941 34.615 0.00 0.00 29.15 4.58
6977 8226 5.277250 GCTAGCACTAGAATCATCTTTGCAC 60.277 44.000 10.63 1.97 42.09 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.