Multiple sequence alignment - TraesCS6A01G159100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G159100 chr6A 100.000 6038 0 0 1 6038 150987969 150981932 0.000000e+00 11151.0
1 TraesCS6A01G159100 chr6A 88.119 101 11 1 1 100 186283773 186283873 1.060000e-22 119.0
2 TraesCS6A01G159100 chr6A 100.000 35 0 0 2364 2398 244233122 244233088 1.400000e-06 65.8
3 TraesCS6A01G159100 chr6A 97.368 38 0 1 2361 2398 535451624 535451588 5.050000e-06 63.9
4 TraesCS6A01G159100 chr6A 93.023 43 2 1 468 509 169912147 169912189 1.820000e-05 62.1
5 TraesCS6A01G159100 chr6A 100.000 29 0 0 2411 2439 150985500 150985472 3.000000e-03 54.7
6 TraesCS6A01G159100 chr6A 100.000 29 0 0 2470 2498 150985559 150985531 3.000000e-03 54.7
7 TraesCS6A01G159100 chr6D 92.177 2301 116 27 99 2371 127373916 127376180 0.000000e+00 3193.0
8 TraesCS6A01G159100 chr6D 95.476 1923 62 10 3020 4938 127376731 127378632 0.000000e+00 3046.0
9 TraesCS6A01G159100 chr6D 88.829 1119 50 25 4938 6038 127378663 127379724 0.000000e+00 1304.0
10 TraesCS6A01G159100 chr6D 92.527 562 11 10 2467 3000 127376179 127376737 0.000000e+00 776.0
11 TraesCS6A01G159100 chr6B 96.404 1585 51 6 3359 4942 226393607 226395186 0.000000e+00 2606.0
12 TraesCS6A01G159100 chr6B 88.889 1935 129 47 460 2371 226390893 226392764 0.000000e+00 2303.0
13 TraesCS6A01G159100 chr6B 89.511 1125 59 22 4935 6038 226395210 226396296 0.000000e+00 1369.0
14 TraesCS6A01G159100 chr6B 88.663 838 42 22 2467 3277 226392763 226393574 0.000000e+00 972.0
15 TraesCS6A01G159100 chr6B 82.301 226 40 0 192 417 226390594 226390819 4.770000e-46 196.0
16 TraesCS6A01G159100 chr6B 92.941 85 6 0 3270 3354 137385852 137385768 2.280000e-24 124.0
17 TraesCS6A01G159100 chr6B 92.941 85 6 0 3270 3354 632187380 632187296 2.280000e-24 124.0
18 TraesCS6A01G159100 chr6B 100.000 31 0 0 2409 2439 226392764 226392794 2.350000e-04 58.4
19 TraesCS6A01G159100 chr4A 91.667 96 7 1 4 98 473684713 473684808 1.370000e-26 132.0
20 TraesCS6A01G159100 chr4D 90.722 97 8 1 4 99 138360004 138359908 1.770000e-25 128.0
21 TraesCS6A01G159100 chr4D 100.000 35 0 0 2364 2398 40820417 40820383 1.400000e-06 65.8
22 TraesCS6A01G159100 chr4D 100.000 35 0 0 2364 2398 127559694 127559728 1.400000e-06 65.8
23 TraesCS6A01G159100 chr4D 100.000 35 0 0 2364 2398 457467092 457467126 1.400000e-06 65.8
24 TraesCS6A01G159100 chr4B 92.045 88 7 0 3271 3358 92663231 92663318 2.280000e-24 124.0
25 TraesCS6A01G159100 chr4B 100.000 35 0 0 2364 2398 81739577 81739543 1.400000e-06 65.8
26 TraesCS6A01G159100 chr7A 89.583 96 9 1 4 98 253592280 253592185 2.960000e-23 121.0
27 TraesCS6A01G159100 chr7A 90.110 91 9 0 3264 3354 84745730 84745820 1.060000e-22 119.0
28 TraesCS6A01G159100 chr7A 91.011 89 7 1 3270 3358 667157740 667157827 1.060000e-22 119.0
29 TraesCS6A01G159100 chr7A 73.276 348 75 11 5687 6025 587519894 587519556 1.780000e-20 111.0
30 TraesCS6A01G159100 chr2D 89.583 96 9 1 4 98 153903814 153903719 2.960000e-23 121.0
31 TraesCS6A01G159100 chr2D 89.583 96 9 1 4 98 436937691 436937596 2.960000e-23 121.0
32 TraesCS6A01G159100 chr2B 91.011 89 8 0 3266 3354 3463084 3462996 2.960000e-23 121.0
33 TraesCS6A01G159100 chr2B 100.000 35 0 0 2364 2398 466678652 466678686 1.400000e-06 65.8
34 TraesCS6A01G159100 chr7B 91.011 89 7 1 3270 3358 638514009 638514096 1.060000e-22 119.0
35 TraesCS6A01G159100 chr7B 73.639 349 72 13 5687 6025 544882580 544882242 3.820000e-22 117.0
36 TraesCS6A01G159100 chr7B 72.779 349 75 13 5687 6025 545973846 545974184 3.850000e-17 100.0
37 TraesCS6A01G159100 chr7B 72.493 349 76 13 5687 6025 544983658 544983320 1.790000e-15 95.3
38 TraesCS6A01G159100 chr3A 88.119 101 11 1 1 100 298564313 298564413 1.060000e-22 119.0
39 TraesCS6A01G159100 chr3A 87.379 103 10 3 3264 3363 110380036 110380138 1.380000e-21 115.0
40 TraesCS6A01G159100 chr2A 88.119 101 11 1 1 100 350710135 350710035 1.060000e-22 119.0
41 TraesCS6A01G159100 chr2A 100.000 35 0 0 2364 2398 48552850 48552816 1.400000e-06 65.8
42 TraesCS6A01G159100 chr1D 88.776 98 10 1 4 100 171861991 171861894 1.060000e-22 119.0
43 TraesCS6A01G159100 chr7D 73.121 346 79 10 5687 6025 515236276 515236614 1.780000e-20 111.0
44 TraesCS6A01G159100 chr7D 72.779 349 75 13 5687 6025 515220070 515220408 3.850000e-17 100.0
45 TraesCS6A01G159100 chr7D 72.493 349 76 13 5687 6025 514093770 514093432 1.790000e-15 95.3
46 TraesCS6A01G159100 chr5B 100.000 35 0 0 2364 2398 321062243 321062209 1.400000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G159100 chr6A 150981932 150987969 6037 True 3753.466667 11151 100.000000 1 6038 3 chr6A.!!$R3 6037
1 TraesCS6A01G159100 chr6D 127373916 127379724 5808 False 2079.750000 3193 92.252250 99 6038 4 chr6D.!!$F1 5939
2 TraesCS6A01G159100 chr6B 226390594 226396296 5702 False 1250.733333 2606 90.961333 192 6038 6 chr6B.!!$F1 5846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.175760 GCTGCTGAAGATGGGTCGTA 59.824 55.0 0.00 0.00 0.00 3.43 F
29 30 0.179081 GAAGATGGGTCGTACCAGGC 60.179 60.0 6.93 2.46 45.20 4.85 F
76 77 0.187361 AGGTAGGCAAGTTTGGGCAA 59.813 50.0 0.00 0.00 0.00 4.52 F
365 366 0.741221 GCTAGCCTCGGACCAAACTG 60.741 60.0 2.29 0.00 0.00 3.16 F
1637 1712 0.391927 CGGCGTTGTGGGGAATAAGA 60.392 55.0 0.00 0.00 0.00 2.10 F
2383 2461 0.106116 ACATCTACTCCCTCCGTCCC 60.106 60.0 0.00 0.00 0.00 4.46 F
3135 3241 0.036010 AGGTCATCCAACAGGAAGCG 60.036 55.0 0.00 0.00 34.49 4.68 F
4847 4956 1.290134 AGTTCCTCCAAGATGGGGAC 58.710 55.0 0.00 0.00 41.85 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1209 1273 0.394352 GTACCTGGTGGAAGCATGGG 60.394 60.000 10.23 0.0 46.93 4.00 R
1617 1692 0.675522 CTTATTCCCCACAACGCCGT 60.676 55.000 0.00 0.0 0.00 5.68 R
1637 1712 2.093500 TGAATAGCTTGGCATCACGACT 60.093 45.455 0.00 0.0 0.00 4.18 R
2363 2441 1.688627 GGGACGGAGGGAGTAGATGTT 60.689 57.143 0.00 0.0 0.00 2.71 R
2995 3101 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.0 0.00 3.72 R
3946 4052 0.600057 CCTCACAGGCAAAAGGCTTC 59.400 55.000 0.00 0.0 44.01 3.86 R
4964 5106 0.034896 GTCCTCGCCCTGAAGAAACA 59.965 55.000 0.00 0.0 0.00 2.83 R
5965 6138 3.991536 GACTCCAAGTCGGCGCTCC 62.992 68.421 7.64 0.0 35.28 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.313819 TGCTGCTGCTGAAGATGG 57.686 55.556 17.00 0.00 40.48 3.51
18 19 1.378119 TGCTGCTGCTGAAGATGGG 60.378 57.895 17.00 0.00 40.48 4.00
19 20 1.378250 GCTGCTGCTGAAGATGGGT 60.378 57.895 10.92 0.00 36.03 4.51
20 21 1.375098 GCTGCTGCTGAAGATGGGTC 61.375 60.000 10.92 0.00 36.03 4.46
21 22 1.078918 TGCTGCTGAAGATGGGTCG 60.079 57.895 0.00 0.00 0.00 4.79
22 23 1.078848 GCTGCTGAAGATGGGTCGT 60.079 57.895 0.00 0.00 0.00 4.34
23 24 0.175760 GCTGCTGAAGATGGGTCGTA 59.824 55.000 0.00 0.00 0.00 3.43
24 25 1.927895 CTGCTGAAGATGGGTCGTAC 58.072 55.000 0.00 0.00 0.00 3.67
25 26 0.535335 TGCTGAAGATGGGTCGTACC 59.465 55.000 0.00 0.00 37.60 3.34
26 27 0.535335 GCTGAAGATGGGTCGTACCA 59.465 55.000 3.46 3.46 46.24 3.25
27 28 1.471676 GCTGAAGATGGGTCGTACCAG 60.472 57.143 6.93 0.00 45.20 4.00
28 29 1.137086 CTGAAGATGGGTCGTACCAGG 59.863 57.143 6.93 0.00 45.20 4.45
29 30 0.179081 GAAGATGGGTCGTACCAGGC 60.179 60.000 6.93 2.46 45.20 4.85
30 31 1.623542 AAGATGGGTCGTACCAGGCC 61.624 60.000 0.00 0.00 45.20 5.19
31 32 3.441011 GATGGGTCGTACCAGGCCG 62.441 68.421 0.00 0.00 45.20 6.13
33 34 3.698820 GGGTCGTACCAGGCCGTT 61.699 66.667 0.00 0.00 41.02 4.44
34 35 2.433664 GGTCGTACCAGGCCGTTG 60.434 66.667 0.00 0.00 38.42 4.10
35 36 2.433664 GTCGTACCAGGCCGTTGG 60.434 66.667 9.48 9.48 44.09 3.77
58 59 3.052082 CCACGCTCAAGCCCACAG 61.052 66.667 0.00 0.00 37.91 3.66
59 60 3.052082 CACGCTCAAGCCCACAGG 61.052 66.667 0.00 0.00 37.91 4.00
60 61 3.560251 ACGCTCAAGCCCACAGGT 61.560 61.111 0.00 0.00 37.91 4.00
61 62 2.214216 ACGCTCAAGCCCACAGGTA 61.214 57.895 0.00 0.00 37.91 3.08
62 63 1.448540 CGCTCAAGCCCACAGGTAG 60.449 63.158 0.00 0.00 37.91 3.18
63 64 1.078143 GCTCAAGCCCACAGGTAGG 60.078 63.158 0.00 0.00 34.57 3.18
70 71 3.745723 CCCACAGGTAGGCAAGTTT 57.254 52.632 0.00 0.00 0.00 2.66
71 72 1.247567 CCCACAGGTAGGCAAGTTTG 58.752 55.000 0.00 0.00 0.00 2.93
72 73 1.247567 CCACAGGTAGGCAAGTTTGG 58.752 55.000 0.00 0.00 0.00 3.28
73 74 1.247567 CACAGGTAGGCAAGTTTGGG 58.752 55.000 0.00 0.00 0.00 4.12
74 75 0.539669 ACAGGTAGGCAAGTTTGGGC 60.540 55.000 0.00 0.00 0.00 5.36
75 76 0.539438 CAGGTAGGCAAGTTTGGGCA 60.539 55.000 0.00 0.00 0.00 5.36
76 77 0.187361 AGGTAGGCAAGTTTGGGCAA 59.813 50.000 0.00 0.00 0.00 4.52
77 78 1.203174 AGGTAGGCAAGTTTGGGCAAT 60.203 47.619 0.00 0.00 0.00 3.56
78 79 1.204704 GGTAGGCAAGTTTGGGCAATC 59.795 52.381 0.00 0.00 0.00 2.67
79 80 1.204704 GTAGGCAAGTTTGGGCAATCC 59.795 52.381 0.00 0.00 0.00 3.01
88 89 3.797353 GGGCAATCCCGGCTCAGA 61.797 66.667 0.00 0.00 43.94 3.27
89 90 2.272146 GGCAATCCCGGCTCAGAA 59.728 61.111 0.00 0.00 0.00 3.02
90 91 2.115291 GGCAATCCCGGCTCAGAAC 61.115 63.158 0.00 0.00 0.00 3.01
91 92 2.464459 GCAATCCCGGCTCAGAACG 61.464 63.158 0.00 0.00 0.00 3.95
92 93 2.125106 AATCCCGGCTCAGAACGC 60.125 61.111 0.00 0.00 0.00 4.84
93 94 3.682292 AATCCCGGCTCAGAACGCC 62.682 63.158 0.00 0.00 44.11 5.68
154 155 1.885887 CGTTTTTCAAGAGGCATGGGA 59.114 47.619 0.00 0.00 0.00 4.37
159 160 1.067295 TCAAGAGGCATGGGACTGTT 58.933 50.000 0.00 0.00 35.69 3.16
172 173 2.887568 CTGTTGCTAGCGGAGGCG 60.888 66.667 10.77 0.00 46.35 5.52
177 178 4.577246 GCTAGCGGAGGCGGTCTG 62.577 72.222 0.00 0.00 46.35 3.51
187 188 3.681835 GCGGTCTGACGGTGGACT 61.682 66.667 15.47 0.00 33.46 3.85
203 204 1.686325 GACTAAGGGAGGCGGCATCA 61.686 60.000 17.05 0.00 0.00 3.07
287 288 1.306970 CGTCCTGTAGGAGGGAGGT 59.693 63.158 11.79 0.00 46.49 3.85
347 348 3.954258 AGCATAAATCCACCTTACCAAGC 59.046 43.478 0.00 0.00 0.00 4.01
365 366 0.741221 GCTAGCCTCGGACCAAACTG 60.741 60.000 2.29 0.00 0.00 3.16
386 387 5.707298 ACTGTGAGGAAAACCATATTGACAG 59.293 40.000 0.00 0.00 34.58 3.51
387 388 4.458989 TGTGAGGAAAACCATATTGACAGC 59.541 41.667 0.00 0.00 0.00 4.40
435 436 0.889994 TTGGTAGTGCGATGTACCGT 59.110 50.000 0.00 0.00 41.57 4.83
530 570 7.678194 ATCAATGACACACTGTTTTAAAACG 57.322 32.000 22.57 19.07 41.74 3.60
550 590 3.509575 ACGGGCTTCAAAATTTATGCAGA 59.490 39.130 0.00 0.00 0.00 4.26
565 605 4.624336 ATGCAGACCGAGATCGATATAC 57.376 45.455 0.00 0.00 43.02 1.47
566 606 2.747989 TGCAGACCGAGATCGATATACC 59.252 50.000 0.00 0.00 43.02 2.73
574 614 4.264585 CGAGATCGATATACCACGATTCG 58.735 47.826 4.14 4.14 46.71 3.34
588 628 3.254060 ACGATTCGTGAGATCCTGTTTG 58.746 45.455 11.56 0.00 39.18 2.93
591 631 2.768253 TCGTGAGATCCTGTTTGCAT 57.232 45.000 0.00 0.00 33.31 3.96
612 661 3.951775 ACTGCAAACACCTTCAAACAA 57.048 38.095 0.00 0.00 0.00 2.83
638 687 4.669700 TGACAACTCTACTAGGGTTGCTA 58.330 43.478 23.56 13.01 42.55 3.49
648 697 7.351952 TCTACTAGGGTTGCTATTAAGAGACA 58.648 38.462 0.11 0.00 0.00 3.41
657 706 5.118990 TGCTATTAAGAGACAGGCAACATC 58.881 41.667 0.11 0.00 41.41 3.06
658 707 5.118990 GCTATTAAGAGACAGGCAACATCA 58.881 41.667 0.11 0.00 41.41 3.07
666 715 4.847198 AGACAGGCAACATCAATATCACA 58.153 39.130 0.00 0.00 41.41 3.58
669 718 3.379057 CAGGCAACATCAATATCACAGCA 59.621 43.478 0.00 0.00 41.41 4.41
692 741 5.165911 TGTAGACGATCGGTGTCTTTATC 57.834 43.478 20.98 4.23 44.00 1.75
694 743 4.294416 AGACGATCGGTGTCTTTATCTG 57.706 45.455 20.98 0.00 44.00 2.90
698 747 4.174009 CGATCGGTGTCTTTATCTGTGTT 58.826 43.478 7.38 0.00 0.00 3.32
699 748 4.625742 CGATCGGTGTCTTTATCTGTGTTT 59.374 41.667 7.38 0.00 0.00 2.83
700 749 5.803461 CGATCGGTGTCTTTATCTGTGTTTA 59.197 40.000 7.38 0.00 0.00 2.01
701 750 6.475727 CGATCGGTGTCTTTATCTGTGTTTAT 59.524 38.462 7.38 0.00 0.00 1.40
702 751 7.010183 CGATCGGTGTCTTTATCTGTGTTTATT 59.990 37.037 7.38 0.00 0.00 1.40
703 752 7.972832 TCGGTGTCTTTATCTGTGTTTATTT 57.027 32.000 0.00 0.00 0.00 1.40
704 753 9.661563 ATCGGTGTCTTTATCTGTGTTTATTTA 57.338 29.630 0.00 0.00 0.00 1.40
705 754 9.491675 TCGGTGTCTTTATCTGTGTTTATTTAA 57.508 29.630 0.00 0.00 0.00 1.52
706 755 9.755064 CGGTGTCTTTATCTGTGTTTATTTAAG 57.245 33.333 0.00 0.00 0.00 1.85
738 787 3.440173 CCAAACGAACCATACATGCTCTT 59.560 43.478 0.00 0.00 0.00 2.85
937 994 3.368116 CCGATATCCCCTACGGCTTTTAG 60.368 52.174 0.00 0.00 38.98 1.85
958 1015 1.206578 CGCCGTTCGAGCAAACAAT 59.793 52.632 0.00 0.00 41.67 2.71
1231 1295 1.556911 CATGCTTCCACCAGGTACTCT 59.443 52.381 0.00 0.00 34.60 3.24
1246 1310 1.341156 ACTCTGCCTGCCCATCTACC 61.341 60.000 0.00 0.00 0.00 3.18
1253 1317 2.049627 CTGCCCATCTACCTGCTCCC 62.050 65.000 0.00 0.00 0.00 4.30
1313 1377 6.595772 AGAGTAGAGCGAGCATAATTTTTG 57.404 37.500 0.00 0.00 0.00 2.44
1314 1378 6.109359 AGAGTAGAGCGAGCATAATTTTTGT 58.891 36.000 0.00 0.00 0.00 2.83
1362 1426 5.922544 CGATTGAATGCTTGGGGAATTAATC 59.077 40.000 0.00 0.00 0.00 1.75
1407 1476 7.498070 GTGACTAGCACTTTTTGATAATTGC 57.502 36.000 9.26 0.00 44.27 3.56
1420 1491 8.674263 TTTTGATAATTGCAGTTGGTGATTTT 57.326 26.923 4.47 0.00 0.00 1.82
1425 1496 6.949578 AATTGCAGTTGGTGATTTTATTCG 57.050 33.333 0.00 0.00 0.00 3.34
1429 1500 4.165779 CAGTTGGTGATTTTATTCGGTGC 58.834 43.478 0.00 0.00 0.00 5.01
1486 1561 3.179339 TTCTTGGGGTTGGGCCGA 61.179 61.111 0.00 0.00 38.44 5.54
1562 1637 4.553330 TGTTCCTCTTAGCTAACTTGGG 57.447 45.455 0.86 2.89 0.00 4.12
1612 1687 7.116075 TGTTATTACTGTTCCATGGTAAGCAT 58.884 34.615 12.58 6.62 0.00 3.79
1613 1688 7.066887 TGTTATTACTGTTCCATGGTAAGCATG 59.933 37.037 12.58 0.00 0.00 4.06
1617 1692 4.682553 CCATGGTAAGCATGGGCA 57.317 55.556 2.57 0.00 44.32 5.36
1636 1711 0.675522 ACGGCGTTGTGGGGAATAAG 60.676 55.000 6.77 0.00 0.00 1.73
1637 1712 0.391927 CGGCGTTGTGGGGAATAAGA 60.392 55.000 0.00 0.00 0.00 2.10
1638 1713 1.379527 GGCGTTGTGGGGAATAAGAG 58.620 55.000 0.00 0.00 0.00 2.85
1708 1783 9.559732 TTAATTATGCTGCTGATGTAATGTAGT 57.440 29.630 0.00 0.00 0.00 2.73
1710 1785 8.768957 ATTATGCTGCTGATGTAATGTAGTAG 57.231 34.615 0.00 0.00 0.00 2.57
1724 1799 6.791867 AATGTAGTAGTATGCCTTGTGAGA 57.208 37.500 0.00 0.00 0.00 3.27
1729 1804 3.423539 AGTATGCCTTGTGAGAAAGCA 57.576 42.857 0.00 0.00 0.00 3.91
1754 1829 9.139174 CACAAGTTTCAAACAGTTTTTCAGTAT 57.861 29.630 2.41 0.00 0.00 2.12
1816 1891 3.470709 AGTCATCTGGTTTATCATGGCG 58.529 45.455 0.00 0.00 0.00 5.69
1836 1911 2.560896 GCGAAGTAAAGTGCAAAGACG 58.439 47.619 0.00 0.00 0.00 4.18
1967 2042 2.191641 GACAGCCATCTGCCTCCC 59.808 66.667 0.00 0.00 44.10 4.30
2270 2348 6.575162 ATGTCAAACAACTTAAGCTTAGGG 57.425 37.500 18.70 12.39 0.00 3.53
2297 2375 1.351707 CGCGTGAACTGTGTGCTTT 59.648 52.632 0.00 0.00 0.00 3.51
2363 2441 2.601240 TGGTGCAATCTGATCCCAAA 57.399 45.000 0.00 0.00 0.00 3.28
2369 2447 4.159135 GTGCAATCTGATCCCAAAACATCT 59.841 41.667 0.00 0.00 0.00 2.90
2370 2448 5.357878 GTGCAATCTGATCCCAAAACATCTA 59.642 40.000 0.00 0.00 0.00 1.98
2371 2449 5.357878 TGCAATCTGATCCCAAAACATCTAC 59.642 40.000 0.00 0.00 0.00 2.59
2372 2450 5.591877 GCAATCTGATCCCAAAACATCTACT 59.408 40.000 0.00 0.00 0.00 2.57
2373 2451 6.238593 GCAATCTGATCCCAAAACATCTACTC 60.239 42.308 0.00 0.00 0.00 2.59
2374 2452 5.359194 TCTGATCCCAAAACATCTACTCC 57.641 43.478 0.00 0.00 0.00 3.85
2375 2453 4.164221 TCTGATCCCAAAACATCTACTCCC 59.836 45.833 0.00 0.00 0.00 4.30
2376 2454 4.111577 TGATCCCAAAACATCTACTCCCT 58.888 43.478 0.00 0.00 0.00 4.20
2377 2455 4.164221 TGATCCCAAAACATCTACTCCCTC 59.836 45.833 0.00 0.00 0.00 4.30
2378 2456 2.844348 TCCCAAAACATCTACTCCCTCC 59.156 50.000 0.00 0.00 0.00 4.30
2379 2457 2.420129 CCCAAAACATCTACTCCCTCCG 60.420 54.545 0.00 0.00 0.00 4.63
2380 2458 2.236395 CCAAAACATCTACTCCCTCCGT 59.764 50.000 0.00 0.00 0.00 4.69
2381 2459 3.522553 CAAAACATCTACTCCCTCCGTC 58.477 50.000 0.00 0.00 0.00 4.79
2382 2460 1.777941 AACATCTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
2383 2461 0.106116 ACATCTACTCCCTCCGTCCC 60.106 60.000 0.00 0.00 0.00 4.46
2384 2462 0.106167 CATCTACTCCCTCCGTCCCA 60.106 60.000 0.00 0.00 0.00 4.37
2385 2463 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
2386 2464 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
2387 2465 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
2388 2466 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
2389 2467 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
2390 2468 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
2391 2469 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
2392 2470 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2393 2471 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
2394 2472 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2395 2473 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
2396 2474 6.269194 TCCCTCCGTCCCATAATATAAGAAT 58.731 40.000 0.00 0.00 0.00 2.40
2397 2475 6.156256 TCCCTCCGTCCCATAATATAAGAATG 59.844 42.308 0.00 0.00 0.00 2.67
2398 2476 6.349300 CCTCCGTCCCATAATATAAGAATGG 58.651 44.000 4.96 4.96 39.95 3.16
2399 2477 5.741011 TCCGTCCCATAATATAAGAATGGC 58.259 41.667 6.04 0.00 39.10 4.40
2400 2478 5.487488 TCCGTCCCATAATATAAGAATGGCT 59.513 40.000 6.04 0.00 39.10 4.75
2401 2479 6.670464 TCCGTCCCATAATATAAGAATGGCTA 59.330 38.462 6.04 0.00 39.10 3.93
2402 2480 7.181305 TCCGTCCCATAATATAAGAATGGCTAA 59.819 37.037 6.04 0.00 39.10 3.09
2403 2481 7.993183 CCGTCCCATAATATAAGAATGGCTAAT 59.007 37.037 6.04 0.00 39.10 1.73
2417 2495 9.500785 AAGAATGGCTAATAAGAAGATTAGAGC 57.499 33.333 7.24 0.00 40.46 4.09
2418 2496 8.100164 AGAATGGCTAATAAGAAGATTAGAGCC 58.900 37.037 12.91 12.91 40.46 4.70
2419 2497 7.566658 ATGGCTAATAAGAAGATTAGAGCCT 57.433 36.000 17.49 6.96 40.46 4.58
2420 2498 6.763355 TGGCTAATAAGAAGATTAGAGCCTG 58.237 40.000 17.49 0.00 40.46 4.85
2421 2499 6.169800 GGCTAATAAGAAGATTAGAGCCTGG 58.830 44.000 12.67 0.00 40.46 4.45
2422 2500 5.641636 GCTAATAAGAAGATTAGAGCCTGGC 59.358 44.000 11.65 11.65 40.46 4.85
2423 2501 5.903198 AATAAGAAGATTAGAGCCTGGCT 57.097 39.130 23.64 23.64 43.88 4.75
2424 2502 7.310113 GCTAATAAGAAGATTAGAGCCTGGCTA 60.310 40.741 23.44 6.65 40.46 3.93
2425 2503 7.380423 AATAAGAAGATTAGAGCCTGGCTAA 57.620 36.000 23.44 14.08 39.88 3.09
2426 2504 5.903198 AAGAAGATTAGAGCCTGGCTAAT 57.097 39.130 23.44 18.52 39.88 1.73
2427 2505 8.671987 ATAAGAAGATTAGAGCCTGGCTAATA 57.328 34.615 23.44 14.81 39.88 0.98
2428 2506 7.380423 AAGAAGATTAGAGCCTGGCTAATAA 57.620 36.000 23.44 22.19 39.88 1.40
2429 2507 7.003402 AGAAGATTAGAGCCTGGCTAATAAG 57.997 40.000 23.44 0.00 39.88 1.73
2430 2508 6.784969 AGAAGATTAGAGCCTGGCTAATAAGA 59.215 38.462 23.44 5.18 39.88 2.10
2431 2509 7.291182 AGAAGATTAGAGCCTGGCTAATAAGAA 59.709 37.037 23.44 9.71 39.88 2.52
2432 2510 7.003402 AGATTAGAGCCTGGCTAATAAGAAG 57.997 40.000 23.44 0.00 39.88 2.85
2433 2511 6.784969 AGATTAGAGCCTGGCTAATAAGAAGA 59.215 38.462 23.44 2.89 39.88 2.87
2434 2512 7.457535 AGATTAGAGCCTGGCTAATAAGAAGAT 59.542 37.037 23.44 8.32 39.88 2.40
2435 2513 5.903198 AGAGCCTGGCTAATAAGAAGATT 57.097 39.130 23.44 0.00 39.88 2.40
2436 2514 5.863965 AGAGCCTGGCTAATAAGAAGATTC 58.136 41.667 23.44 4.30 39.88 2.52
2437 2515 5.606329 AGAGCCTGGCTAATAAGAAGATTCT 59.394 40.000 23.44 6.80 39.88 2.40
2438 2516 6.101005 AGAGCCTGGCTAATAAGAAGATTCTT 59.899 38.462 23.44 12.19 43.96 2.52
2439 2517 6.295249 AGCCTGGCTAATAAGAAGATTCTTC 58.705 40.000 21.98 17.04 41.10 2.87
2440 2518 6.058183 GCCTGGCTAATAAGAAGATTCTTCA 58.942 40.000 24.51 8.70 43.72 3.02
2441 2519 6.714356 GCCTGGCTAATAAGAAGATTCTTCAT 59.286 38.462 24.51 17.02 43.72 2.57
2442 2520 7.308469 GCCTGGCTAATAAGAAGATTCTTCATG 60.308 40.741 24.51 10.84 43.72 3.07
2443 2521 7.935755 CCTGGCTAATAAGAAGATTCTTCATGA 59.064 37.037 24.51 11.83 43.72 3.07
2444 2522 9.504708 CTGGCTAATAAGAAGATTCTTCATGAT 57.495 33.333 24.51 13.30 43.72 2.45
2445 2523 9.499479 TGGCTAATAAGAAGATTCTTCATGATC 57.501 33.333 24.51 9.70 43.72 2.92
2446 2524 8.945057 GGCTAATAAGAAGATTCTTCATGATCC 58.055 37.037 24.51 13.78 43.72 3.36
2447 2525 8.945057 GCTAATAAGAAGATTCTTCATGATCCC 58.055 37.037 24.51 7.66 43.72 3.85
2450 2528 9.705103 AATAAGAAGATTCTTCATGATCCCAAA 57.295 29.630 24.51 0.12 43.72 3.28
2451 2529 9.705103 ATAAGAAGATTCTTCATGATCCCAAAA 57.295 29.630 24.51 0.00 43.72 2.44
2452 2530 7.401955 AGAAGATTCTTCATGATCCCAAAAC 57.598 36.000 24.51 0.00 32.55 2.43
2453 2531 6.950041 AGAAGATTCTTCATGATCCCAAAACA 59.050 34.615 24.51 0.00 32.55 2.83
2454 2532 7.618512 AGAAGATTCTTCATGATCCCAAAACAT 59.381 33.333 24.51 0.00 32.55 2.71
2455 2533 7.344095 AGATTCTTCATGATCCCAAAACATC 57.656 36.000 0.00 0.00 0.00 3.06
2456 2534 7.124052 AGATTCTTCATGATCCCAAAACATCT 58.876 34.615 0.00 0.00 0.00 2.90
2457 2535 7.618512 AGATTCTTCATGATCCCAAAACATCTT 59.381 33.333 0.00 0.00 0.00 2.40
2458 2536 6.764308 TCTTCATGATCCCAAAACATCTTC 57.236 37.500 0.00 0.00 0.00 2.87
2459 2537 5.653769 TCTTCATGATCCCAAAACATCTTCC 59.346 40.000 0.00 0.00 0.00 3.46
2460 2538 3.947196 TCATGATCCCAAAACATCTTCCG 59.053 43.478 0.00 0.00 0.00 4.30
2461 2539 3.433306 TGATCCCAAAACATCTTCCGT 57.567 42.857 0.00 0.00 0.00 4.69
2462 2540 3.081061 TGATCCCAAAACATCTTCCGTG 58.919 45.455 0.00 0.00 0.00 4.94
2463 2541 1.904287 TCCCAAAACATCTTCCGTGG 58.096 50.000 0.00 0.00 0.00 4.94
2464 2542 1.422024 TCCCAAAACATCTTCCGTGGA 59.578 47.619 0.00 0.00 0.00 4.02
2465 2543 1.812571 CCCAAAACATCTTCCGTGGAG 59.187 52.381 0.00 0.00 0.00 3.86
2721 2810 8.871686 ATATTTTTGTTTCACTCAGGTTTCAC 57.128 30.769 0.00 0.00 0.00 3.18
2811 2900 6.443792 CAGGTACACATCCCAAAAGTTTTAC 58.556 40.000 0.00 0.00 0.00 2.01
2842 2940 7.450074 TGTTTATGTAGTGTCCTGTCTGATTT 58.550 34.615 0.00 0.00 0.00 2.17
2973 3079 9.202273 GAACCTTCTGTCTCATGCTATAAATAG 57.798 37.037 0.00 0.00 0.00 1.73
3009 3115 9.830975 ATTATATATATGTGTGTGTGTGTGTGT 57.169 29.630 5.44 0.00 0.00 3.72
3010 3116 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
3011 3117 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
3012 3118 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3013 3119 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3014 3120 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3015 3121 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3016 3122 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3017 3123 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3018 3124 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
3135 3241 0.036010 AGGTCATCCAACAGGAAGCG 60.036 55.000 0.00 0.00 34.49 4.68
3254 3360 4.688879 TGTGGTTATTGTCGACACATCTTC 59.311 41.667 19.90 7.34 37.16 2.87
3255 3361 4.929808 GTGGTTATTGTCGACACATCTTCT 59.070 41.667 19.90 0.00 30.55 2.85
3279 3385 8.630917 TCTCTAATTAACCAAATACTCTCTCCG 58.369 37.037 0.00 0.00 0.00 4.63
3301 3407 8.897872 TCCGTTCCTAAATATATGACCTTTTC 57.102 34.615 0.00 0.00 0.00 2.29
3580 3686 3.126831 CCACTGTGTCTGTTCTGACTTC 58.873 50.000 7.08 5.52 37.79 3.01
3676 3782 6.326064 AGCTTCAGTAAGACACCTGATATCAT 59.674 38.462 5.72 0.00 34.37 2.45
3714 3820 8.780846 TTTTAGGATAAGCTTTGAATCACGTA 57.219 30.769 3.20 0.00 0.00 3.57
3763 3869 7.033530 TGTGTAATGTTTGTTTTCTACTGGG 57.966 36.000 0.00 0.00 0.00 4.45
3821 3927 7.541783 CAGAGTTCTGTATCTCTTGCTATATGC 59.458 40.741 0.91 0.00 38.74 3.14
3934 4040 3.941483 CTGTATCACCTTGGATTGTGACC 59.059 47.826 0.00 0.00 43.69 4.02
3946 4052 2.141011 TTGTGACCCTGGATGCCCTG 62.141 60.000 0.00 0.00 0.00 4.45
4047 4153 4.276678 TGAGCATTTTGTTCTCCTGTGAAG 59.723 41.667 0.00 0.00 0.00 3.02
4076 4182 4.722361 TTGTTTTGTGTTACAGGAACCC 57.278 40.909 0.00 0.00 37.22 4.11
4079 4185 3.278668 TTTGTGTTACAGGAACCCGAA 57.721 42.857 0.00 0.00 37.22 4.30
4159 4265 4.943705 ACGATCTTGTCACATTATTGCCTT 59.056 37.500 0.00 0.00 0.00 4.35
4376 4482 4.688879 GCATAATTCAATCCATGGTGCATG 59.311 41.667 12.58 7.03 41.10 4.06
4393 4499 7.711846 TGGTGCATGCGTATTTTATTTCTTAT 58.288 30.769 14.09 0.00 0.00 1.73
4808 4917 2.088104 ACGGGCAGAAGGAGATATCA 57.912 50.000 5.32 0.00 0.00 2.15
4847 4956 1.290134 AGTTCCTCCAAGATGGGGAC 58.710 55.000 0.00 0.00 41.85 4.46
4911 5022 7.846066 TGTCCTTTTTCTTTTCTTTTCCATCA 58.154 30.769 0.00 0.00 0.00 3.07
4955 5097 6.849588 TTTCGAAGATGATATGATGTGTGG 57.150 37.500 0.00 0.00 35.04 4.17
4956 5098 5.789643 TCGAAGATGATATGATGTGTGGA 57.210 39.130 0.00 0.00 0.00 4.02
4957 5099 6.350629 TCGAAGATGATATGATGTGTGGAT 57.649 37.500 0.00 0.00 0.00 3.41
4958 5100 6.161381 TCGAAGATGATATGATGTGTGGATG 58.839 40.000 0.00 0.00 0.00 3.51
4960 5102 6.090493 CGAAGATGATATGATGTGTGGATGTC 59.910 42.308 0.00 0.00 0.00 3.06
4963 5105 7.104290 AGATGATATGATGTGTGGATGTCATC 58.896 38.462 4.06 4.06 41.48 2.92
4964 5106 6.429521 TGATATGATGTGTGGATGTCATCT 57.570 37.500 12.54 0.00 38.78 2.90
4965 5107 6.228258 TGATATGATGTGTGGATGTCATCTG 58.772 40.000 12.54 0.00 38.78 2.90
4966 5108 3.986996 TGATGTGTGGATGTCATCTGT 57.013 42.857 12.54 0.00 38.78 3.41
4968 5110 4.654915 TGATGTGTGGATGTCATCTGTTT 58.345 39.130 12.54 0.00 38.78 2.83
4969 5111 4.696877 TGATGTGTGGATGTCATCTGTTTC 59.303 41.667 12.54 4.11 38.78 2.78
5010 5157 0.953471 TTGGATTCGGAACCTGCACG 60.953 55.000 0.00 0.00 0.00 5.34
5045 5192 0.543277 TCGCTTCCATGAGCCAAGAT 59.457 50.000 0.00 0.00 39.51 2.40
5048 5195 1.409241 GCTTCCATGAGCCAAGATGGA 60.409 52.381 0.00 0.00 45.27 3.41
5054 5201 0.841961 TGAGCCAAGATGGAGGATGG 59.158 55.000 0.00 0.00 40.96 3.51
5071 5218 3.753797 GGATGGTCTTCAGTTCTTGGAAC 59.246 47.826 2.57 2.57 0.00 3.62
5118 5265 2.225467 GCCATGTATCTTGAAGGGCTC 58.775 52.381 0.00 0.00 37.00 4.70
5135 5282 2.355716 GGCTCAGCAGTGGTGGTAAATA 60.356 50.000 21.53 0.83 31.49 1.40
5136 5283 2.939103 GCTCAGCAGTGGTGGTAAATAG 59.061 50.000 21.53 11.58 31.49 1.73
5137 5284 3.619979 GCTCAGCAGTGGTGGTAAATAGT 60.620 47.826 21.53 0.00 31.49 2.12
5138 5285 4.382685 GCTCAGCAGTGGTGGTAAATAGTA 60.383 45.833 21.53 0.00 31.49 1.82
5139 5286 5.080969 TCAGCAGTGGTGGTAAATAGTAC 57.919 43.478 21.53 0.00 31.49 2.73
5140 5287 4.775780 TCAGCAGTGGTGGTAAATAGTACT 59.224 41.667 21.53 0.00 31.49 2.73
5146 5293 7.424001 CAGTGGTGGTAAATAGTACTAGTAGC 58.576 42.308 8.85 12.28 0.00 3.58
5176 5333 2.959465 GGATGAATTCCCCCTAGTGG 57.041 55.000 2.27 0.00 38.75 4.00
5186 5343 2.193127 CCCCCTAGTGGTGTGATAACA 58.807 52.381 0.00 0.00 0.00 2.41
5205 5362 5.835113 AACATGATTACTTTTAGCCGCAT 57.165 34.783 0.00 0.00 0.00 4.73
5216 5373 0.750249 TAGCCGCATTTCCTCGATGA 59.250 50.000 0.00 0.00 0.00 2.92
5217 5374 0.107456 AGCCGCATTTCCTCGATGAT 59.893 50.000 0.00 0.00 0.00 2.45
5218 5375 1.344438 AGCCGCATTTCCTCGATGATA 59.656 47.619 0.00 0.00 0.00 2.15
5219 5376 2.027745 AGCCGCATTTCCTCGATGATAT 60.028 45.455 0.00 0.00 0.00 1.63
5220 5377 2.349886 GCCGCATTTCCTCGATGATATC 59.650 50.000 0.00 0.00 0.00 1.63
5272 5429 3.906601 GCGTCATTTCGTTTTCTTCCTTC 59.093 43.478 0.00 0.00 0.00 3.46
5279 5437 4.004196 TCGTTTTCTTCCTTCTTCTCCC 57.996 45.455 0.00 0.00 0.00 4.30
5324 5482 1.944024 TGTTGCGATTGTTCCGAAGTT 59.056 42.857 0.00 0.00 0.00 2.66
5325 5483 2.356382 TGTTGCGATTGTTCCGAAGTTT 59.644 40.909 0.00 0.00 0.00 2.66
5326 5484 2.679355 TGCGATTGTTCCGAAGTTTG 57.321 45.000 0.00 0.00 0.00 2.93
5384 5544 1.838077 GCTAGGTAGATTGTGGTGGGT 59.162 52.381 0.00 0.00 0.00 4.51
5385 5545 2.420129 GCTAGGTAGATTGTGGTGGGTG 60.420 54.545 0.00 0.00 0.00 4.61
5386 5546 0.328258 AGGTAGATTGTGGTGGGTGC 59.672 55.000 0.00 0.00 0.00 5.01
5387 5547 0.679960 GGTAGATTGTGGTGGGTGCC 60.680 60.000 0.00 0.00 0.00 5.01
5413 5573 1.421646 GCTAACTATCACCAGGGCCAT 59.578 52.381 6.18 0.00 0.00 4.40
5415 5575 0.106519 AACTATCACCAGGGCCATGC 60.107 55.000 13.13 0.00 0.00 4.06
5435 5595 2.936498 GCCATCACGTAGTTAACATGCT 59.064 45.455 8.61 0.00 41.61 3.79
5438 5598 4.629634 CCATCACGTAGTTAACATGCTTGA 59.370 41.667 8.61 6.98 41.61 3.02
5442 5602 3.000041 CGTAGTTAACATGCTTGAGCCA 59.000 45.455 8.61 0.00 41.18 4.75
5452 5612 5.717119 ACATGCTTGAGCCAAATTCTTAAG 58.283 37.500 6.60 0.00 41.18 1.85
5551 5717 6.764877 ACAAACGTATGATAATAGGAAGCG 57.235 37.500 0.00 0.00 0.00 4.68
5609 5778 5.391312 ACAAAAGAAAGAATGAATCCGGG 57.609 39.130 0.00 0.00 0.00 5.73
5614 5783 0.395724 AAGAATGAATCCGGGTGGGC 60.396 55.000 0.00 0.00 35.24 5.36
5670 5843 0.317603 CTTGACGACGTTGACGGACT 60.318 55.000 10.51 0.00 44.95 3.85
5747 5920 1.557443 GGTTGACGTTGACGAGCTGG 61.557 60.000 10.87 0.00 43.02 4.85
5795 5968 4.373116 TTGAGCGTGACGGCCTCC 62.373 66.667 7.25 0.00 0.00 4.30
5934 6107 1.136500 GGTAGGAGACGTTGTCCATCC 59.864 57.143 17.55 14.58 36.43 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.378119 CCCATCTTCAGCAGCAGCA 60.378 57.895 3.17 0.00 45.49 4.41
1 2 1.375098 GACCCATCTTCAGCAGCAGC 61.375 60.000 0.00 0.00 42.56 5.25
2 3 1.088340 CGACCCATCTTCAGCAGCAG 61.088 60.000 0.00 0.00 0.00 4.24
3 4 1.078918 CGACCCATCTTCAGCAGCA 60.079 57.895 0.00 0.00 0.00 4.41
4 5 0.175760 TACGACCCATCTTCAGCAGC 59.824 55.000 0.00 0.00 0.00 5.25
5 6 1.471676 GGTACGACCCATCTTCAGCAG 60.472 57.143 0.00 0.00 30.04 4.24
6 7 0.535335 GGTACGACCCATCTTCAGCA 59.465 55.000 0.00 0.00 30.04 4.41
7 8 0.535335 TGGTACGACCCATCTTCAGC 59.465 55.000 0.00 0.00 37.50 4.26
8 9 1.137086 CCTGGTACGACCCATCTTCAG 59.863 57.143 0.00 0.00 37.50 3.02
9 10 1.191535 CCTGGTACGACCCATCTTCA 58.808 55.000 0.00 0.00 37.50 3.02
10 11 0.179081 GCCTGGTACGACCCATCTTC 60.179 60.000 0.00 0.00 37.50 2.87
11 12 1.623542 GGCCTGGTACGACCCATCTT 61.624 60.000 0.00 0.00 37.50 2.40
12 13 2.064581 GGCCTGGTACGACCCATCT 61.065 63.158 0.00 0.00 37.50 2.90
13 14 2.504519 GGCCTGGTACGACCCATC 59.495 66.667 0.00 0.00 37.50 3.51
14 15 3.467226 CGGCCTGGTACGACCCAT 61.467 66.667 0.00 0.00 37.50 4.00
16 17 3.698820 AACGGCCTGGTACGACCC 61.699 66.667 17.38 0.00 37.50 4.46
17 18 2.433664 CAACGGCCTGGTACGACC 60.434 66.667 17.38 0.00 39.22 4.79
18 19 2.433664 CCAACGGCCTGGTACGAC 60.434 66.667 17.38 0.00 0.00 4.34
41 42 3.052082 CTGTGGGCTTGAGCGTGG 61.052 66.667 0.00 0.00 43.26 4.94
42 43 2.449031 TACCTGTGGGCTTGAGCGTG 62.449 60.000 0.00 0.00 43.26 5.34
43 44 2.172483 CTACCTGTGGGCTTGAGCGT 62.172 60.000 0.00 0.00 43.26 5.07
44 45 1.448540 CTACCTGTGGGCTTGAGCG 60.449 63.158 0.00 0.00 43.26 5.03
45 46 1.078143 CCTACCTGTGGGCTTGAGC 60.078 63.158 0.00 0.00 41.14 4.26
52 53 1.247567 CAAACTTGCCTACCTGTGGG 58.752 55.000 0.00 0.00 38.88 4.61
53 54 1.247567 CCAAACTTGCCTACCTGTGG 58.752 55.000 0.00 0.00 0.00 4.17
54 55 1.247567 CCCAAACTTGCCTACCTGTG 58.752 55.000 0.00 0.00 0.00 3.66
55 56 0.539669 GCCCAAACTTGCCTACCTGT 60.540 55.000 0.00 0.00 0.00 4.00
56 57 0.539438 TGCCCAAACTTGCCTACCTG 60.539 55.000 0.00 0.00 0.00 4.00
57 58 0.187361 TTGCCCAAACTTGCCTACCT 59.813 50.000 0.00 0.00 0.00 3.08
58 59 1.204704 GATTGCCCAAACTTGCCTACC 59.795 52.381 0.00 0.00 0.00 3.18
59 60 1.204704 GGATTGCCCAAACTTGCCTAC 59.795 52.381 0.00 0.00 34.14 3.18
60 61 1.555967 GGATTGCCCAAACTTGCCTA 58.444 50.000 0.00 0.00 34.14 3.93
61 62 2.365410 GGATTGCCCAAACTTGCCT 58.635 52.632 0.00 0.00 34.14 4.75
72 73 2.115291 GTTCTGAGCCGGGATTGCC 61.115 63.158 2.18 0.00 0.00 4.52
73 74 2.464459 CGTTCTGAGCCGGGATTGC 61.464 63.158 2.18 0.00 0.00 3.56
74 75 2.464459 GCGTTCTGAGCCGGGATTG 61.464 63.158 2.18 0.00 0.00 2.67
75 76 2.125106 GCGTTCTGAGCCGGGATT 60.125 61.111 2.18 0.00 0.00 3.01
76 77 4.162690 GGCGTTCTGAGCCGGGAT 62.163 66.667 2.18 0.00 45.58 3.85
82 83 2.049063 ACTGTCGGCGTTCTGAGC 60.049 61.111 6.85 0.00 0.00 4.26
83 84 0.730834 CTGACTGTCGGCGTTCTGAG 60.731 60.000 6.85 0.00 0.00 3.35
84 85 1.285950 CTGACTGTCGGCGTTCTGA 59.714 57.895 6.85 0.00 0.00 3.27
85 86 0.240145 TACTGACTGTCGGCGTTCTG 59.760 55.000 16.33 8.33 0.00 3.02
86 87 1.174783 ATACTGACTGTCGGCGTTCT 58.825 50.000 16.33 0.00 0.00 3.01
87 88 1.654105 CAATACTGACTGTCGGCGTTC 59.346 52.381 16.33 2.07 0.00 3.95
88 89 1.671850 CCAATACTGACTGTCGGCGTT 60.672 52.381 16.33 8.63 0.00 4.84
89 90 0.108804 CCAATACTGACTGTCGGCGT 60.109 55.000 16.33 9.09 0.00 5.68
90 91 0.172578 TCCAATACTGACTGTCGGCG 59.827 55.000 16.33 0.00 0.00 6.46
91 92 1.204941 ACTCCAATACTGACTGTCGGC 59.795 52.381 16.33 0.00 0.00 5.54
92 93 3.193691 AGAACTCCAATACTGACTGTCGG 59.806 47.826 14.91 14.91 0.00 4.79
93 94 4.442375 AGAACTCCAATACTGACTGTCG 57.558 45.455 2.98 0.99 0.00 4.35
94 95 6.031751 AGAAGAACTCCAATACTGACTGTC 57.968 41.667 0.00 0.00 0.00 3.51
95 96 5.336055 CGAGAAGAACTCCAATACTGACTGT 60.336 44.000 0.00 0.00 42.18 3.55
96 97 5.098893 CGAGAAGAACTCCAATACTGACTG 58.901 45.833 0.00 0.00 42.18 3.51
97 98 4.158764 CCGAGAAGAACTCCAATACTGACT 59.841 45.833 0.00 0.00 42.18 3.41
154 155 2.266055 GCCTCCGCTAGCAACAGT 59.734 61.111 16.45 0.00 0.00 3.55
172 173 0.531200 CCTTAGTCCACCGTCAGACC 59.469 60.000 0.00 0.00 33.29 3.85
177 178 1.957765 GCCTCCCTTAGTCCACCGTC 61.958 65.000 0.00 0.00 0.00 4.79
187 188 2.443394 CCTGATGCCGCCTCCCTTA 61.443 63.158 0.00 0.00 0.00 2.69
203 204 3.474570 GCGCCTCTCCACCATCCT 61.475 66.667 0.00 0.00 0.00 3.24
228 229 4.954118 ACCAGGTCCTCCGCCACA 62.954 66.667 0.00 0.00 39.05 4.17
260 261 0.460284 CCTACAGGACGTGTGCATCC 60.460 60.000 10.99 0.00 40.69 3.51
298 299 5.748152 CACGTGAATTCAAACATTCAAAGGT 59.252 36.000 10.90 0.00 43.30 3.50
347 348 0.608640 ACAGTTTGGTCCGAGGCTAG 59.391 55.000 0.00 0.00 0.00 3.42
365 366 4.702131 AGCTGTCAATATGGTTTTCCTCAC 59.298 41.667 0.00 0.00 41.38 3.51
497 537 7.325660 ACAGTGTGTCATTGATTTATGGATC 57.674 36.000 0.00 0.00 0.00 3.36
516 556 4.035278 TGAAGCCCGTTTTAAAACAGTG 57.965 40.909 26.24 16.18 38.81 3.66
530 570 4.183865 GGTCTGCATAAATTTTGAAGCCC 58.816 43.478 0.00 0.00 0.00 5.19
550 590 3.049708 TCGTGGTATATCGATCTCGGT 57.950 47.619 0.00 0.00 40.29 4.69
574 614 4.871993 CAGTATGCAAACAGGATCTCAC 57.128 45.455 0.00 0.00 0.00 3.51
591 631 5.392767 TTTGTTTGAAGGTGTTTGCAGTA 57.607 34.783 0.00 0.00 0.00 2.74
598 638 7.781056 AGTTGTCATATTTGTTTGAAGGTGTT 58.219 30.769 0.00 0.00 0.00 3.32
601 641 7.823745 AGAGTTGTCATATTTGTTTGAAGGT 57.176 32.000 0.00 0.00 0.00 3.50
606 646 8.883731 CCCTAGTAGAGTTGTCATATTTGTTTG 58.116 37.037 0.00 0.00 0.00 2.93
612 661 6.384305 AGCAACCCTAGTAGAGTTGTCATATT 59.616 38.462 21.42 3.43 42.25 1.28
638 687 7.994911 TGATATTGATGTTGCCTGTCTCTTAAT 59.005 33.333 0.00 0.00 0.00 1.40
648 697 3.623703 TGCTGTGATATTGATGTTGCCT 58.376 40.909 0.00 0.00 0.00 4.75
657 706 5.060200 CGATCGTCTACATGCTGTGATATTG 59.940 44.000 7.03 0.00 0.00 1.90
658 707 5.157067 CGATCGTCTACATGCTGTGATATT 58.843 41.667 7.03 0.00 0.00 1.28
666 715 1.065701 GACACCGATCGTCTACATGCT 59.934 52.381 15.09 0.00 0.00 3.79
669 718 5.531659 AGATAAAGACACCGATCGTCTACAT 59.468 40.000 15.09 7.17 42.90 2.29
677 726 7.772332 ATAAACACAGATAAAGACACCGATC 57.228 36.000 0.00 0.00 0.00 3.69
705 754 9.669887 TGTATGGTTCGTTTGGTTAAATATACT 57.330 29.630 0.00 0.00 0.00 2.12
708 757 7.918562 GCATGTATGGTTCGTTTGGTTAAATAT 59.081 33.333 0.00 0.00 0.00 1.28
817 869 4.421948 GTGTCCTTCTCGTGTTAGGTATG 58.578 47.826 7.80 0.00 0.00 2.39
937 994 4.007940 TTTGCTCGAACGGCGCAC 62.008 61.111 10.83 0.00 40.61 5.34
944 1001 3.180387 GCTTTGTGATTGTTTGCTCGAAC 59.820 43.478 0.00 0.00 0.00 3.95
958 1015 2.866010 CGCGTCGTGTGCTTTGTGA 61.866 57.895 0.00 0.00 0.00 3.58
981 1045 2.507324 GCCGACTCCGACTTGCTC 60.507 66.667 0.00 0.00 38.22 4.26
982 1046 2.172483 ATTGCCGACTCCGACTTGCT 62.172 55.000 0.00 0.00 38.22 3.91
983 1047 1.741770 ATTGCCGACTCCGACTTGC 60.742 57.895 0.00 0.00 38.22 4.01
984 1048 1.361668 CCATTGCCGACTCCGACTTG 61.362 60.000 0.00 0.00 38.22 3.16
988 1052 4.812476 CGCCATTGCCGACTCCGA 62.812 66.667 0.00 0.00 38.22 4.55
990 1054 4.467084 TCCGCCATTGCCGACTCC 62.467 66.667 0.00 0.00 0.00 3.85
991 1055 2.892425 CTCCGCCATTGCCGACTC 60.892 66.667 0.00 0.00 0.00 3.36
1209 1273 0.394352 GTACCTGGTGGAAGCATGGG 60.394 60.000 10.23 0.00 46.93 4.00
1231 1295 3.047807 GCAGGTAGATGGGCAGGCA 62.048 63.158 0.00 0.00 0.00 4.75
1246 1310 2.202987 GCAGATGACGGGGAGCAG 60.203 66.667 0.00 0.00 0.00 4.24
1253 1317 1.579698 CAATCTCAGGCAGATGACGG 58.420 55.000 0.00 0.00 41.47 4.79
1313 1377 2.547826 GCCGGTAATCAGTTGGACTAC 58.452 52.381 1.90 0.00 0.00 2.73
1314 1378 1.135527 CGCCGGTAATCAGTTGGACTA 59.864 52.381 1.90 0.00 0.00 2.59
1330 1394 2.351548 CATTCAATCGCTGCGCCG 60.352 61.111 18.65 7.99 0.00 6.46
1362 1426 1.779569 ACTACAACTTCGGCAACTCG 58.220 50.000 0.00 0.00 0.00 4.18
1397 1461 9.941325 AATAAAATCACCAACTGCAATTATCAA 57.059 25.926 0.00 0.00 0.00 2.57
1407 1476 4.082787 AGCACCGAATAAAATCACCAACTG 60.083 41.667 0.00 0.00 0.00 3.16
1420 1491 5.293324 CACAGCAGTAATTAAGCACCGAATA 59.707 40.000 12.19 0.00 0.00 1.75
1425 1496 2.476185 CGCACAGCAGTAATTAAGCACC 60.476 50.000 12.19 0.00 0.00 5.01
1562 1637 6.803154 AGTAAAATCAAGGAGTAGCACAAC 57.197 37.500 0.00 0.00 0.00 3.32
1616 1691 0.956410 TTATTCCCCACAACGCCGTG 60.956 55.000 0.00 0.00 36.61 4.94
1617 1692 0.675522 CTTATTCCCCACAACGCCGT 60.676 55.000 0.00 0.00 0.00 5.68
1636 1711 2.231215 ATAGCTTGGCATCACGACTC 57.769 50.000 0.00 0.00 0.00 3.36
1637 1712 2.093500 TGAATAGCTTGGCATCACGACT 60.093 45.455 0.00 0.00 0.00 4.18
1638 1713 2.279741 TGAATAGCTTGGCATCACGAC 58.720 47.619 0.00 0.00 0.00 4.34
1707 1782 4.093556 GTGCTTTCTCACAAGGCATACTAC 59.906 45.833 0.00 0.00 36.97 2.73
1708 1783 4.253685 GTGCTTTCTCACAAGGCATACTA 58.746 43.478 0.00 0.00 36.97 1.82
1709 1784 3.077359 GTGCTTTCTCACAAGGCATACT 58.923 45.455 0.00 0.00 36.97 2.12
1710 1785 2.813754 TGTGCTTTCTCACAAGGCATAC 59.186 45.455 0.00 0.00 43.27 2.39
1724 1799 6.859420 AAAACTGTTTGAAACTTGTGCTTT 57.141 29.167 9.69 4.68 0.00 3.51
1729 1804 9.705290 AATACTGAAAAACTGTTTGAAACTTGT 57.295 25.926 9.69 5.65 33.04 3.16
1754 1829 8.364142 CCAAACCATGACCAAATTAGAACTAAA 58.636 33.333 0.00 0.00 0.00 1.85
1816 1891 2.560896 CGTCTTTGCACTTTACTTCGC 58.439 47.619 0.00 0.00 0.00 4.70
2261 2339 2.772287 GCGCATTCTATCCCTAAGCTT 58.228 47.619 0.30 3.48 0.00 3.74
2270 2348 1.927174 ACAGTTCACGCGCATTCTATC 59.073 47.619 5.73 0.00 0.00 2.08
2363 2441 1.688627 GGGACGGAGGGAGTAGATGTT 60.689 57.143 0.00 0.00 0.00 2.71
2369 2447 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2370 2448 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2371 2449 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2372 2450 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
2373 2451 6.349300 CATTCTTATATTATGGGACGGAGGG 58.651 44.000 0.00 0.00 0.00 4.30
2374 2452 6.349300 CCATTCTTATATTATGGGACGGAGG 58.651 44.000 0.00 0.00 36.10 4.30
2375 2453 5.817816 GCCATTCTTATATTATGGGACGGAG 59.182 44.000 0.00 0.00 39.36 4.63
2376 2454 5.487488 AGCCATTCTTATATTATGGGACGGA 59.513 40.000 0.00 0.00 39.36 4.69
2377 2455 5.745227 AGCCATTCTTATATTATGGGACGG 58.255 41.667 0.00 0.00 39.36 4.79
2378 2456 8.964476 ATTAGCCATTCTTATATTATGGGACG 57.036 34.615 0.00 0.00 39.36 4.79
2391 2469 9.500785 GCTCTAATCTTCTTATTAGCCATTCTT 57.499 33.333 0.00 0.00 38.69 2.52
2392 2470 8.100164 GGCTCTAATCTTCTTATTAGCCATTCT 58.900 37.037 0.00 0.00 38.69 2.40
2393 2471 8.100164 AGGCTCTAATCTTCTTATTAGCCATTC 58.900 37.037 12.15 0.00 38.69 2.67
2394 2472 7.882271 CAGGCTCTAATCTTCTTATTAGCCATT 59.118 37.037 12.15 0.00 38.69 3.16
2395 2473 7.393216 CAGGCTCTAATCTTCTTATTAGCCAT 58.607 38.462 12.15 0.00 38.69 4.40
2396 2474 6.239714 CCAGGCTCTAATCTTCTTATTAGCCA 60.240 42.308 12.15 0.00 38.69 4.75
2397 2475 6.169800 CCAGGCTCTAATCTTCTTATTAGCC 58.830 44.000 0.00 0.00 38.69 3.93
2398 2476 5.641636 GCCAGGCTCTAATCTTCTTATTAGC 59.358 44.000 3.29 0.00 38.69 3.09
2399 2477 7.003402 AGCCAGGCTCTAATCTTCTTATTAG 57.997 40.000 8.70 0.00 39.71 1.73
2400 2478 8.492415 TTAGCCAGGCTCTAATCTTCTTATTA 57.508 34.615 20.38 0.00 40.44 0.98
2401 2479 5.903198 AGCCAGGCTCTAATCTTCTTATT 57.097 39.130 8.70 0.00 30.62 1.40
2402 2480 7.566658 ATTAGCCAGGCTCTAATCTTCTTAT 57.433 36.000 20.38 0.00 40.44 1.73
2403 2481 8.492415 TTATTAGCCAGGCTCTAATCTTCTTA 57.508 34.615 20.38 0.00 40.44 2.10
2404 2482 5.903198 ATTAGCCAGGCTCTAATCTTCTT 57.097 39.130 20.38 0.00 40.44 2.52
2405 2483 6.784969 TCTTATTAGCCAGGCTCTAATCTTCT 59.215 38.462 20.38 0.00 40.44 2.85
2406 2484 6.998802 TCTTATTAGCCAGGCTCTAATCTTC 58.001 40.000 20.38 0.00 40.44 2.87
2407 2485 7.291182 TCTTCTTATTAGCCAGGCTCTAATCTT 59.709 37.037 20.38 0.00 40.44 2.40
2408 2486 6.784969 TCTTCTTATTAGCCAGGCTCTAATCT 59.215 38.462 20.38 0.00 40.44 2.40
2409 2487 6.998802 TCTTCTTATTAGCCAGGCTCTAATC 58.001 40.000 20.38 0.00 40.44 1.75
2410 2488 7.566658 ATCTTCTTATTAGCCAGGCTCTAAT 57.433 36.000 20.38 15.92 40.44 1.73
2411 2489 7.291182 AGAATCTTCTTATTAGCCAGGCTCTAA 59.709 37.037 20.38 15.82 35.44 2.10
2412 2490 6.784969 AGAATCTTCTTATTAGCCAGGCTCTA 59.215 38.462 20.38 8.09 35.44 2.43
2413 2491 5.606329 AGAATCTTCTTATTAGCCAGGCTCT 59.394 40.000 20.38 9.64 35.44 4.09
2414 2492 5.863965 AGAATCTTCTTATTAGCCAGGCTC 58.136 41.667 20.38 0.00 35.44 4.70
2415 2493 5.903198 AGAATCTTCTTATTAGCCAGGCT 57.097 39.130 20.63 20.63 37.11 4.58
2416 2494 6.058183 TGAAGAATCTTCTTATTAGCCAGGC 58.942 40.000 21.89 1.84 46.84 4.85
2417 2495 7.935755 TCATGAAGAATCTTCTTATTAGCCAGG 59.064 37.037 21.89 3.22 46.84 4.45
2418 2496 8.899427 TCATGAAGAATCTTCTTATTAGCCAG 57.101 34.615 21.89 4.03 46.84 4.85
2419 2497 9.499479 GATCATGAAGAATCTTCTTATTAGCCA 57.501 33.333 21.89 1.57 46.84 4.75
2420 2498 8.945057 GGATCATGAAGAATCTTCTTATTAGCC 58.055 37.037 21.89 13.09 46.84 3.93
2421 2499 8.945057 GGGATCATGAAGAATCTTCTTATTAGC 58.055 37.037 21.89 8.88 46.84 3.09
2424 2502 9.705103 TTTGGGATCATGAAGAATCTTCTTATT 57.295 29.630 21.89 8.13 46.84 1.40
2425 2503 9.705103 TTTTGGGATCATGAAGAATCTTCTTAT 57.295 29.630 21.89 13.00 46.84 1.73
2426 2504 8.960591 GTTTTGGGATCATGAAGAATCTTCTTA 58.039 33.333 21.89 9.20 46.84 2.10
2428 2506 6.950041 TGTTTTGGGATCATGAAGAATCTTCT 59.050 34.615 21.89 3.52 39.74 2.85
2429 2507 7.161773 TGTTTTGGGATCATGAAGAATCTTC 57.838 36.000 15.62 15.62 0.00 2.87
2430 2508 7.618512 AGATGTTTTGGGATCATGAAGAATCTT 59.381 33.333 0.00 0.00 0.00 2.40
2431 2509 7.124052 AGATGTTTTGGGATCATGAAGAATCT 58.876 34.615 0.00 0.00 0.00 2.40
2432 2510 7.344095 AGATGTTTTGGGATCATGAAGAATC 57.656 36.000 0.00 0.00 0.00 2.52
2433 2511 7.147776 GGAAGATGTTTTGGGATCATGAAGAAT 60.148 37.037 0.00 0.00 0.00 2.40
2434 2512 6.153340 GGAAGATGTTTTGGGATCATGAAGAA 59.847 38.462 0.00 0.00 0.00 2.52
2435 2513 5.653769 GGAAGATGTTTTGGGATCATGAAGA 59.346 40.000 0.00 0.00 0.00 2.87
2436 2514 5.449588 CGGAAGATGTTTTGGGATCATGAAG 60.450 44.000 0.00 0.00 0.00 3.02
2437 2515 4.398988 CGGAAGATGTTTTGGGATCATGAA 59.601 41.667 0.00 0.00 0.00 2.57
2438 2516 3.947196 CGGAAGATGTTTTGGGATCATGA 59.053 43.478 0.00 0.00 0.00 3.07
2439 2517 3.696051 ACGGAAGATGTTTTGGGATCATG 59.304 43.478 0.00 0.00 0.00 3.07
2440 2518 3.696051 CACGGAAGATGTTTTGGGATCAT 59.304 43.478 0.00 0.00 0.00 2.45
2441 2519 3.081061 CACGGAAGATGTTTTGGGATCA 58.919 45.455 0.00 0.00 0.00 2.92
2442 2520 2.423538 CCACGGAAGATGTTTTGGGATC 59.576 50.000 0.00 0.00 0.00 3.36
2443 2521 2.041081 TCCACGGAAGATGTTTTGGGAT 59.959 45.455 0.00 0.00 0.00 3.85
2444 2522 1.422024 TCCACGGAAGATGTTTTGGGA 59.578 47.619 0.00 0.00 0.00 4.37
2445 2523 1.812571 CTCCACGGAAGATGTTTTGGG 59.187 52.381 0.00 0.00 0.00 4.12
2446 2524 2.504367 ACTCCACGGAAGATGTTTTGG 58.496 47.619 0.00 0.00 0.00 3.28
2447 2525 5.682943 TTTACTCCACGGAAGATGTTTTG 57.317 39.130 0.00 0.00 0.00 2.44
2448 2526 6.894339 AATTTACTCCACGGAAGATGTTTT 57.106 33.333 0.00 0.00 0.00 2.43
2449 2527 7.391620 TCTAATTTACTCCACGGAAGATGTTT 58.608 34.615 0.00 0.00 0.00 2.83
2450 2528 6.942976 TCTAATTTACTCCACGGAAGATGTT 58.057 36.000 0.00 0.00 0.00 2.71
2451 2529 6.540438 TCTAATTTACTCCACGGAAGATGT 57.460 37.500 0.00 0.00 0.00 3.06
2452 2530 5.463724 GCTCTAATTTACTCCACGGAAGATG 59.536 44.000 0.00 0.00 0.00 2.90
2453 2531 5.453480 GGCTCTAATTTACTCCACGGAAGAT 60.453 44.000 0.00 0.00 0.00 2.40
2454 2532 4.142004 GGCTCTAATTTACTCCACGGAAGA 60.142 45.833 0.00 0.00 0.00 2.87
2455 2533 4.120589 GGCTCTAATTTACTCCACGGAAG 58.879 47.826 0.00 0.00 0.00 3.46
2456 2534 3.773119 AGGCTCTAATTTACTCCACGGAA 59.227 43.478 0.00 0.00 0.00 4.30
2457 2535 3.132289 CAGGCTCTAATTTACTCCACGGA 59.868 47.826 0.00 0.00 0.00 4.69
2458 2536 3.458189 CAGGCTCTAATTTACTCCACGG 58.542 50.000 0.00 0.00 0.00 4.94
2459 2537 3.458189 CCAGGCTCTAATTTACTCCACG 58.542 50.000 0.00 0.00 0.00 4.94
2460 2538 3.118223 AGCCAGGCTCTAATTTACTCCAC 60.118 47.826 8.70 0.00 30.62 4.02
2461 2539 3.115390 AGCCAGGCTCTAATTTACTCCA 58.885 45.455 8.70 0.00 30.62 3.86
2462 2540 3.847671 AGCCAGGCTCTAATTTACTCC 57.152 47.619 8.70 0.00 30.62 3.85
2463 2541 8.368668 TCTTATTAGCCAGGCTCTAATTTACTC 58.631 37.037 20.38 0.00 40.44 2.59
2464 2542 8.263854 TCTTATTAGCCAGGCTCTAATTTACT 57.736 34.615 20.38 0.00 40.44 2.24
2465 2543 8.904099 TTCTTATTAGCCAGGCTCTAATTTAC 57.096 34.615 20.38 0.00 40.44 2.01
2698 2787 6.935167 AGTGAAACCTGAGTGAAACAAAAAT 58.065 32.000 0.00 0.00 36.85 1.82
2811 2900 8.035394 AGACAGGACACTACATAAACAACTATG 58.965 37.037 0.00 0.00 35.71 2.23
2824 2913 7.393841 ACTACTAAATCAGACAGGACACTAC 57.606 40.000 0.00 0.00 0.00 2.73
2842 2940 6.070881 TGGAAAACGGCTAATGGTTACTACTA 60.071 38.462 0.00 0.00 0.00 1.82
2995 3101 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2996 3102 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2997 3103 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2998 3104 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2999 3105 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3000 3106 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3001 3107 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3002 3108 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3003 3109 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3004 3110 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3005 3111 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
3006 3112 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
3007 3113 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
3008 3114 2.480802 TGTAACACACACACACACACAC 59.519 45.455 0.00 0.00 30.04 3.82
3009 3115 2.767505 TGTAACACACACACACACACA 58.232 42.857 0.00 0.00 30.04 3.72
3135 3241 2.987232 AGGACCGAAATAAGGTTGAGC 58.013 47.619 0.00 0.00 43.01 4.26
3254 3360 8.414778 ACGGAGAGAGTATTTGGTTAATTAGAG 58.585 37.037 0.00 0.00 0.00 2.43
3255 3361 8.302515 ACGGAGAGAGTATTTGGTTAATTAGA 57.697 34.615 0.00 0.00 0.00 2.10
3373 3479 9.010029 ACGACATTAGTGAATCAAGGTTAATTT 57.990 29.630 0.00 0.00 0.00 1.82
3580 3686 7.163001 TCTCTGGCTGCAATATAGTATACAG 57.837 40.000 5.50 0.00 0.00 2.74
3714 3820 6.047870 TGCAGCATTTCAACTTTTGTACAAT 58.952 32.000 9.56 0.00 0.00 2.71
3763 3869 7.385478 AGAGAAGAATTGAACTAGAAACGAACC 59.615 37.037 0.00 0.00 0.00 3.62
3794 3900 8.791675 CATATAGCAAGAGATACAGAACTCTGA 58.208 37.037 13.61 0.00 46.59 3.27
3821 3927 3.439129 TCATGAAGCACTGCAGAAGATTG 59.561 43.478 23.35 8.97 0.00 2.67
3934 4040 2.123982 GGCTTCAGGGCATCCAGG 60.124 66.667 0.00 0.00 40.53 4.45
3946 4052 0.600057 CCTCACAGGCAAAAGGCTTC 59.400 55.000 0.00 0.00 44.01 3.86
4035 4141 8.519799 AAACAAATTAGTTCTTCACAGGAGAA 57.480 30.769 0.00 0.00 0.00 2.87
4047 4153 9.575783 TTCCTGTAACACAAAACAAATTAGTTC 57.424 29.630 0.00 0.00 0.00 3.01
4076 4182 3.125316 CAGCTAAGTAAGGCAAAGGTTCG 59.875 47.826 0.00 0.00 0.00 3.95
4079 4185 4.367039 TTCAGCTAAGTAAGGCAAAGGT 57.633 40.909 0.00 0.00 0.00 3.50
4159 4265 4.511826 AGAAACGGCAAAAACAAAACAACA 59.488 33.333 0.00 0.00 0.00 3.33
4393 4499 2.813754 CGGAGAAAACCAGCAGATTGAA 59.186 45.455 0.00 0.00 0.00 2.69
4407 4513 7.778083 ACACTATGAATATACACACGGAGAAA 58.222 34.615 0.00 0.00 0.00 2.52
4485 4591 4.339429 CACTTCGGGCATATTTTAACACG 58.661 43.478 0.00 0.00 0.00 4.49
4808 4917 0.251916 TGCGGATCGAATTCCCAACT 59.748 50.000 0.00 0.00 31.61 3.16
4864 4973 1.024271 TCACTGAACCTTGCAACAGC 58.976 50.000 13.15 0.00 34.25 4.40
4911 5022 7.333423 TCGAAATTTTCAAGACCGATAATGTCT 59.667 33.333 9.66 0.00 44.75 3.41
4955 5097 3.376546 GCCCTGAAGAAACAGATGACATC 59.623 47.826 7.39 7.39 39.94 3.06
4956 5098 3.350833 GCCCTGAAGAAACAGATGACAT 58.649 45.455 0.00 0.00 39.94 3.06
4957 5099 2.783135 GCCCTGAAGAAACAGATGACA 58.217 47.619 0.00 0.00 39.94 3.58
4958 5100 1.734465 CGCCCTGAAGAAACAGATGAC 59.266 52.381 0.00 0.00 39.94 3.06
4960 5102 2.005451 CTCGCCCTGAAGAAACAGATG 58.995 52.381 0.00 0.00 39.94 2.90
4963 5105 0.321671 TCCTCGCCCTGAAGAAACAG 59.678 55.000 0.00 0.00 37.61 3.16
4964 5106 0.034896 GTCCTCGCCCTGAAGAAACA 59.965 55.000 0.00 0.00 0.00 2.83
4965 5107 0.321996 AGTCCTCGCCCTGAAGAAAC 59.678 55.000 0.00 0.00 0.00 2.78
4966 5108 1.549170 GTAGTCCTCGCCCTGAAGAAA 59.451 52.381 0.00 0.00 0.00 2.52
4968 5110 0.039180 TGTAGTCCTCGCCCTGAAGA 59.961 55.000 0.00 0.00 0.00 2.87
4969 5111 0.895530 TTGTAGTCCTCGCCCTGAAG 59.104 55.000 0.00 0.00 0.00 3.02
5010 5157 1.521681 CGACGGCAGAATCTTCCCC 60.522 63.158 0.00 0.00 0.00 4.81
5045 5192 2.907892 AGAACTGAAGACCATCCTCCA 58.092 47.619 0.00 0.00 0.00 3.86
5048 5195 3.251484 TCCAAGAACTGAAGACCATCCT 58.749 45.455 0.00 0.00 0.00 3.24
5054 5201 4.096382 TGCTTTGTTCCAAGAACTGAAGAC 59.904 41.667 19.17 13.76 0.00 3.01
5071 5218 2.859806 GCTAAACACAGTGCCTGCTTTG 60.860 50.000 0.00 0.00 34.37 2.77
5082 5229 0.953727 TGGCAGCTTGCTAAACACAG 59.046 50.000 7.85 0.00 44.28 3.66
5118 5265 5.086104 AGTACTATTTACCACCACTGCTG 57.914 43.478 0.00 0.00 0.00 4.41
5135 5282 9.561069 CATCCCAATTTTATTGCTACTAGTACT 57.439 33.333 0.00 0.00 0.00 2.73
5136 5283 9.555727 TCATCCCAATTTTATTGCTACTAGTAC 57.444 33.333 0.00 0.00 0.00 2.73
5138 5285 9.646522 ATTCATCCCAATTTTATTGCTACTAGT 57.353 29.630 0.00 0.00 0.00 2.57
5176 5333 7.850982 CGGCTAAAAGTAATCATGTTATCACAC 59.149 37.037 0.00 0.00 35.03 3.82
5186 5343 5.594317 AGGAAATGCGGCTAAAAGTAATCAT 59.406 36.000 0.00 0.00 0.00 2.45
5239 5396 3.110358 CGAAATGACGCACGGTAGAATA 58.890 45.455 0.00 0.00 0.00 1.75
5272 5429 1.672356 CGGTGTTGCAGGGGAGAAG 60.672 63.158 0.00 0.00 0.00 2.85
5324 5482 1.550976 AGCCGAAACCCAACAAAACAA 59.449 42.857 0.00 0.00 0.00 2.83
5325 5483 1.134965 CAGCCGAAACCCAACAAAACA 60.135 47.619 0.00 0.00 0.00 2.83
5326 5484 1.135333 TCAGCCGAAACCCAACAAAAC 59.865 47.619 0.00 0.00 0.00 2.43
5384 5544 2.698797 GGTGATAGTTAGCTACCAGGCA 59.301 50.000 0.00 0.00 34.17 4.75
5385 5545 2.698797 TGGTGATAGTTAGCTACCAGGC 59.301 50.000 0.00 0.00 0.00 4.85
5386 5546 3.322254 CCTGGTGATAGTTAGCTACCAGG 59.678 52.174 26.59 26.59 45.08 4.45
5387 5547 3.322254 CCCTGGTGATAGTTAGCTACCAG 59.678 52.174 18.77 18.77 38.08 4.00
5413 5573 2.675844 GCATGTTAACTACGTGATGGCA 59.324 45.455 7.22 0.00 44.95 4.92
5415 5575 4.629634 TCAAGCATGTTAACTACGTGATGG 59.370 41.667 7.22 0.00 44.95 3.51
5424 5584 5.244626 AGAATTTGGCTCAAGCATGTTAACT 59.755 36.000 7.22 0.00 44.36 2.24
5458 5618 7.369803 CTTGTTAATGATAGCAAGTGTCTGT 57.630 36.000 4.80 0.00 42.27 3.41
5477 5637 3.545703 AGCAGCTGACAGTTTACTTGTT 58.454 40.909 20.43 0.00 0.00 2.83
5484 5644 2.222027 GGTGTAAGCAGCTGACAGTTT 58.778 47.619 20.43 5.55 39.79 2.66
5542 5708 7.272037 TGTTTCTTTCTTTTTCGCTTCCTAT 57.728 32.000 0.00 0.00 0.00 2.57
5543 5709 6.687081 TGTTTCTTTCTTTTTCGCTTCCTA 57.313 33.333 0.00 0.00 0.00 2.94
5544 5710 5.576447 TGTTTCTTTCTTTTTCGCTTCCT 57.424 34.783 0.00 0.00 0.00 3.36
5627 5800 0.108472 TCGCATGCCTCTGACTCAAG 60.108 55.000 13.15 0.00 0.00 3.02
5965 6138 3.991536 GACTCCAAGTCGGCGCTCC 62.992 68.421 7.64 0.00 35.28 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.