Multiple sequence alignment - TraesCS6A01G159000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G159000 chr6A 100.000 3330 0 0 1 3330 150980007 150983336 0.000000e+00 6150.0
1 TraesCS6A01G159000 chr6D 92.582 3060 129 40 3 3026 127381660 127378663 0.000000e+00 4303.0
2 TraesCS6A01G159000 chr6D 98.046 307 4 1 3026 3330 127378632 127378326 1.760000e-147 532.0
3 TraesCS6A01G159000 chr6B 91.281 1514 68 25 1541 3029 226396684 226395210 0.000000e+00 2006.0
4 TraesCS6A01G159000 chr6B 88.389 956 59 24 637 1541 226397679 226396725 0.000000e+00 1103.0
5 TraesCS6A01G159000 chr6B 92.557 309 20 3 3022 3330 226395186 226394881 1.100000e-119 440.0
6 TraesCS6A01G159000 chr7D 74.309 724 166 16 1564 2277 515236989 515236276 4.200000e-74 289.0
7 TraesCS6A01G159000 chr7D 73.901 728 162 21 1564 2277 514093057 514093770 1.970000e-67 267.0
8 TraesCS6A01G159000 chr7D 73.865 727 164 19 1564 2277 515220783 515220070 1.970000e-67 267.0
9 TraesCS6A01G159000 chr7A 74.345 725 164 15 1564 2277 587519181 587519894 4.200000e-74 289.0
10 TraesCS6A01G159000 chr7B 75.193 649 137 17 1641 2277 544881944 544882580 5.440000e-73 285.0
11 TraesCS6A01G159000 chr7B 74.691 648 142 15 1641 2277 545974482 545973846 5.480000e-68 268.0
12 TraesCS6A01G159000 chr7B 74.228 648 145 15 1641 2277 544983022 544983658 5.510000e-63 252.0
13 TraesCS6A01G159000 chr5D 80.000 200 32 7 1697 1892 519545930 519546125 1.250000e-29 141.0
14 TraesCS6A01G159000 chr2B 80.508 118 15 7 1697 1810 690211224 690211111 2.130000e-12 84.2
15 TraesCS6A01G159000 chr2D 71.253 407 93 21 1697 2091 574346175 574345781 7.660000e-12 82.4
16 TraesCS6A01G159000 chr4B 80.909 110 13 8 1702 1807 86465879 86465984 2.750000e-11 80.5
17 TraesCS6A01G159000 chr2A 72.333 300 63 19 1696 1985 712702425 712702136 3.560000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G159000 chr6A 150980007 150983336 3329 False 6150.0 6150 100.000000 1 3330 1 chr6A.!!$F1 3329
1 TraesCS6A01G159000 chr6D 127378326 127381660 3334 True 2417.5 4303 95.314000 3 3330 2 chr6D.!!$R1 3327
2 TraesCS6A01G159000 chr6B 226394881 226397679 2798 True 1183.0 2006 90.742333 637 3330 3 chr6B.!!$R1 2693
3 TraesCS6A01G159000 chr7D 515236276 515236989 713 True 289.0 289 74.309000 1564 2277 1 chr7D.!!$R2 713
4 TraesCS6A01G159000 chr7D 514093057 514093770 713 False 267.0 267 73.901000 1564 2277 1 chr7D.!!$F1 713
5 TraesCS6A01G159000 chr7D 515220070 515220783 713 True 267.0 267 73.865000 1564 2277 1 chr7D.!!$R1 713
6 TraesCS6A01G159000 chr7A 587519181 587519894 713 False 289.0 289 74.345000 1564 2277 1 chr7A.!!$F1 713
7 TraesCS6A01G159000 chr7B 544881944 544882580 636 False 285.0 285 75.193000 1641 2277 1 chr7B.!!$F1 636
8 TraesCS6A01G159000 chr7B 545973846 545974482 636 True 268.0 268 74.691000 1641 2277 1 chr7B.!!$R1 636
9 TraesCS6A01G159000 chr7B 544983022 544983658 636 False 252.0 252 74.228000 1641 2277 1 chr7B.!!$F2 636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
233 235 0.309612 CGGTGCGCCTGTTTAAAAGT 59.690 50.0 15.69 0.0 0.0 2.66 F
1512 1569 0.035152 TCCCCAACGTACGCTCTCTA 60.035 55.0 16.72 0.0 0.0 2.43 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2028 2134 1.136500 GGTAGGAGACGTTGTCCATCC 59.864 57.143 17.55 14.58 36.43 3.51 R
2547 2688 0.106519 AACTATCACCAGGGCCATGC 60.107 55.000 13.13 0.00 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.881159 TAAACAACAGGCACCGGTCG 60.881 55.000 2.59 1.09 0.00 4.79
33 34 2.596553 AAACAACAGGCACCGGTCGA 62.597 55.000 2.59 0.00 0.00 4.20
78 79 2.087646 GGATGCTCAAGTGGGTTTCTC 58.912 52.381 0.00 0.00 0.00 2.87
144 145 3.192633 GCCCGTTTGAAATGTGGTAGATT 59.807 43.478 0.00 0.00 0.00 2.40
145 146 4.396790 GCCCGTTTGAAATGTGGTAGATTA 59.603 41.667 0.00 0.00 0.00 1.75
152 154 8.504005 GTTTGAAATGTGGTAGATTATATCCCG 58.496 37.037 0.00 0.00 0.00 5.14
208 210 3.998672 GAACGGCCACGGAGACCA 61.999 66.667 2.24 0.00 46.48 4.02
217 219 3.382832 CGGAGACCAGGAAGCGGT 61.383 66.667 0.00 0.00 40.30 5.68
233 235 0.309612 CGGTGCGCCTGTTTAAAAGT 59.690 50.000 15.69 0.00 0.00 2.66
275 277 1.821753 GCTCTAGAGTGAGGCTGAACA 59.178 52.381 20.75 0.00 34.82 3.18
359 361 3.991051 CCAGGGTGTCTGACGCGT 61.991 66.667 13.85 13.85 46.18 6.01
361 363 4.664677 AGGGTGTCTGACGCGTGC 62.665 66.667 20.70 9.34 42.37 5.34
389 391 3.353836 TTCGGACGCCTGCAAAGC 61.354 61.111 0.00 0.00 0.00 3.51
397 399 2.759114 CCTGCAAAGCCCCTCTGA 59.241 61.111 0.00 0.00 0.00 3.27
401 403 2.621407 CCTGCAAAGCCCCTCTGATTTA 60.621 50.000 0.00 0.00 0.00 1.40
404 406 2.363359 GCAAAGCCCCTCTGATTTATGG 59.637 50.000 0.00 0.00 0.00 2.74
460 462 4.164252 GTTCGAACGGATGCGAGT 57.836 55.556 15.49 0.00 37.85 4.18
461 463 1.702299 GTTCGAACGGATGCGAGTG 59.298 57.895 15.49 1.74 37.85 3.51
519 522 0.684805 AACGGTTTTGCCCCAGACAA 60.685 50.000 0.00 0.00 0.00 3.18
529 532 2.017113 GCCCCAGACAAACCCTATTCG 61.017 57.143 0.00 0.00 0.00 3.34
652 655 6.464222 CATGTTTTAGAGTCAACCAGGAGTA 58.536 40.000 0.00 0.00 0.00 2.59
703 710 0.759060 AAGCCCCACCTGTTTTCCAC 60.759 55.000 0.00 0.00 0.00 4.02
714 721 1.778383 TTTTCCACCCTGCCTCCCT 60.778 57.895 0.00 0.00 0.00 4.20
722 729 4.767255 CTGCCTCCCTCACCGCAC 62.767 72.222 0.00 0.00 0.00 5.34
1281 1338 3.884774 AACTTCCTGGTGGGCGCA 61.885 61.111 10.83 0.00 34.39 6.09
1341 1398 2.046892 CTGGACGGCAACCTCCTG 60.047 66.667 0.00 0.00 0.00 3.86
1506 1563 1.227176 GATCCTCCCCAACGTACGC 60.227 63.158 16.72 0.00 0.00 4.42
1507 1564 1.673808 GATCCTCCCCAACGTACGCT 61.674 60.000 16.72 0.00 0.00 5.07
1509 1566 2.348888 CCTCCCCAACGTACGCTCT 61.349 63.158 16.72 0.00 0.00 4.09
1512 1569 0.035152 TCCCCAACGTACGCTCTCTA 60.035 55.000 16.72 0.00 0.00 2.43
1515 1572 1.471684 CCCAACGTACGCTCTCTACTT 59.528 52.381 16.72 0.00 0.00 2.24
1527 1588 4.676459 CGCTCTCTACTTCTCTTGCATTGA 60.676 45.833 0.00 0.00 0.00 2.57
1537 1598 5.885230 TCTCTTGCATTGACATTAACCAG 57.115 39.130 0.00 0.00 0.00 4.00
1541 1602 5.769662 TCTTGCATTGACATTAACCAGAACT 59.230 36.000 0.00 0.00 0.00 3.01
1542 1603 6.265196 TCTTGCATTGACATTAACCAGAACTT 59.735 34.615 0.00 0.00 0.00 2.66
1543 1604 6.012658 TGCATTGACATTAACCAGAACTTC 57.987 37.500 0.00 0.00 0.00 3.01
1544 1605 5.088739 GCATTGACATTAACCAGAACTTCG 58.911 41.667 0.00 0.00 0.00 3.79
1545 1606 4.742438 TTGACATTAACCAGAACTTCGC 57.258 40.909 0.00 0.00 0.00 4.70
1546 1607 4.002906 TGACATTAACCAGAACTTCGCT 57.997 40.909 0.00 0.00 0.00 4.93
1550 1656 2.060326 TAACCAGAACTTCGCTGACG 57.940 50.000 0.00 0.00 42.01 4.35
1618 1724 2.049802 AACAACGCGACGATCCGT 60.050 55.556 15.93 0.00 45.10 4.69
1997 2103 3.991536 GACTCCAAGTCGGCGCTCC 62.992 68.421 7.64 0.00 35.28 4.70
2335 2459 0.108472 TCGCATGCCTCTGACTCAAG 60.108 55.000 13.15 0.00 0.00 3.02
2337 2461 1.375098 GCATGCCTCTGACTCAAGCC 61.375 60.000 6.36 0.00 0.00 4.35
2338 2462 0.035725 CATGCCTCTGACTCAAGCCA 60.036 55.000 0.00 0.00 0.00 4.75
2339 2463 0.035630 ATGCCTCTGACTCAAGCCAC 60.036 55.000 0.00 0.00 0.00 5.01
2340 2464 1.739562 GCCTCTGACTCAAGCCACG 60.740 63.158 0.00 0.00 0.00 4.94
2418 2553 5.576447 TGTTTCTTTCTTTTTCGCTTCCT 57.424 34.783 0.00 0.00 0.00 3.36
2419 2554 6.687081 TGTTTCTTTCTTTTTCGCTTCCTA 57.313 33.333 0.00 0.00 0.00 2.94
2420 2555 7.272037 TGTTTCTTTCTTTTTCGCTTCCTAT 57.728 32.000 0.00 0.00 0.00 2.57
2478 2619 2.222027 GGTGTAAGCAGCTGACAGTTT 58.778 47.619 20.43 5.55 39.79 2.66
2485 2626 3.545703 AGCAGCTGACAGTTTACTTGTT 58.454 40.909 20.43 0.00 0.00 2.83
2504 2645 7.369803 CTTGTTAATGATAGCAAGTGTCTGT 57.630 36.000 4.80 0.00 42.27 3.41
2538 2679 5.244626 AGAATTTGGCTCAAGCATGTTAACT 59.755 36.000 7.22 0.00 44.36 2.24
2547 2688 4.629634 TCAAGCATGTTAACTACGTGATGG 59.370 41.667 7.22 0.00 44.95 3.51
2549 2690 2.675844 GCATGTTAACTACGTGATGGCA 59.324 45.455 7.22 0.00 44.95 4.92
2575 2716 3.322254 CCCTGGTGATAGTTAGCTACCAG 59.678 52.174 18.77 18.77 38.08 4.00
2576 2717 3.322254 CCTGGTGATAGTTAGCTACCAGG 59.678 52.174 26.59 26.59 45.08 4.45
2577 2718 2.698797 TGGTGATAGTTAGCTACCAGGC 59.301 50.000 0.00 0.00 0.00 4.85
2578 2719 2.698797 GGTGATAGTTAGCTACCAGGCA 59.301 50.000 0.00 0.00 34.17 4.75
2636 2779 1.135333 TCAGCCGAAACCCAACAAAAC 59.865 47.619 0.00 0.00 0.00 2.43
2637 2780 1.134965 CAGCCGAAACCCAACAAAACA 60.135 47.619 0.00 0.00 0.00 2.83
2638 2781 1.550976 AGCCGAAACCCAACAAAACAA 59.449 42.857 0.00 0.00 0.00 2.83
2690 2833 1.672356 CGGTGTTGCAGGGGAGAAG 60.672 63.158 0.00 0.00 0.00 2.85
2723 2867 3.110358 CGAAATGACGCACGGTAGAATA 58.890 45.455 0.00 0.00 0.00 1.75
2776 2920 5.594317 AGGAAATGCGGCTAAAAGTAATCAT 59.406 36.000 0.00 0.00 0.00 2.45
2786 2930 7.850982 CGGCTAAAAGTAATCATGTTATCACAC 59.149 37.037 0.00 0.00 35.03 3.82
2824 2978 9.646522 ATTCATCCCAATTTTATTGCTACTAGT 57.353 29.630 0.00 0.00 0.00 2.57
2844 2998 5.086104 AGTACTATTTACCACCACTGCTG 57.914 43.478 0.00 0.00 0.00 4.41
2880 3034 0.953727 TGGCAGCTTGCTAAACACAG 59.046 50.000 7.85 0.00 44.28 3.66
2891 3045 2.859806 GCTAAACACAGTGCCTGCTTTG 60.860 50.000 0.00 0.00 34.37 2.77
2908 3062 4.096382 TGCTTTGTTCCAAGAACTGAAGAC 59.904 41.667 19.17 13.76 0.00 3.01
2914 3068 3.251484 TCCAAGAACTGAAGACCATCCT 58.749 45.455 0.00 0.00 0.00 3.24
2917 3071 2.907892 AGAACTGAAGACCATCCTCCA 58.092 47.619 0.00 0.00 0.00 3.86
2952 3106 1.521681 CGACGGCAGAATCTTCCCC 60.522 63.158 0.00 0.00 0.00 4.81
2993 3147 0.895530 TTGTAGTCCTCGCCCTGAAG 59.104 55.000 0.00 0.00 0.00 3.02
2995 3149 1.183549 GTAGTCCTCGCCCTGAAGAA 58.816 55.000 0.00 0.00 0.00 2.52
2996 3150 1.549170 GTAGTCCTCGCCCTGAAGAAA 59.451 52.381 0.00 0.00 0.00 2.52
3003 3157 1.623311 TCGCCCTGAAGAAACAGATGA 59.377 47.619 0.00 0.00 39.94 2.92
3051 3241 7.333423 TCGAAATTTTCAAGACCGATAATGTCT 59.667 33.333 9.66 0.00 44.75 3.41
3098 3293 1.024271 TCACTGAACCTTGCAACAGC 58.976 50.000 13.15 0.00 34.25 4.40
3154 3349 0.251916 TGCGGATCGAATTCCCAACT 59.748 50.000 0.00 0.00 31.61 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.068560 TGTTGTTTATACCTGACCACGC 58.931 45.455 0.00 0.00 0.00 5.34
1 2 3.682858 CCTGTTGTTTATACCTGACCACG 59.317 47.826 0.00 0.00 0.00 4.94
131 132 6.296259 GGGACGGGATATAATCTACCACATTT 60.296 42.308 0.00 0.00 0.00 2.32
144 145 0.410663 ACGGGATGGGACGGGATATA 59.589 55.000 0.00 0.00 0.00 0.86
145 146 0.903454 GACGGGATGGGACGGGATAT 60.903 60.000 0.00 0.00 0.00 1.63
169 171 2.464459 GCCGGAGCAACGAGATTGG 61.464 63.158 5.05 0.00 38.88 3.16
199 201 3.382832 CCGCTTCCTGGTCTCCGT 61.383 66.667 0.00 0.00 0.00 4.69
249 251 3.477224 CTCACTCTAGAGCGCCGGC 62.477 68.421 19.07 19.07 40.37 6.13
260 262 0.982704 ATGCTGTTCAGCCTCACTCT 59.017 50.000 19.91 0.00 0.00 3.24
275 277 1.271379 CAGTTGCCACACATTCATGCT 59.729 47.619 0.00 0.00 0.00 3.79
361 363 3.103911 GTCCGAACCGCTGTCACG 61.104 66.667 0.00 2.06 0.00 4.35
382 384 2.897271 TAAATCAGAGGGGCTTTGCA 57.103 45.000 0.00 0.00 0.00 4.08
397 399 2.175931 TCCAATGCGGTACCCCATAAAT 59.824 45.455 12.46 0.00 35.57 1.40
401 403 1.440618 TATCCAATGCGGTACCCCAT 58.559 50.000 6.21 6.21 35.57 4.00
404 406 6.386654 CAATTTATTATCCAATGCGGTACCC 58.613 40.000 6.25 0.00 35.57 3.69
460 462 3.332385 GGCCGGACCCCTAAACCA 61.332 66.667 5.05 0.00 0.00 3.67
461 463 4.478371 CGGCCGGACCCCTAAACC 62.478 72.222 20.10 0.00 33.26 3.27
519 522 9.706691 CATATTCATTACTGTACGAATAGGGTT 57.293 33.333 17.25 5.38 34.71 4.11
529 532 7.805071 GCTGCCAAATCATATTCATTACTGTAC 59.195 37.037 0.00 0.00 0.00 2.90
585 588 2.609491 CCAGTGCTAAGTGCTAACGTGA 60.609 50.000 0.00 0.00 43.37 4.35
714 721 2.011741 CTATAGGTGCGGTGCGGTGA 62.012 60.000 0.00 0.00 0.00 4.02
910 935 1.292223 GCTTATATGCGGCGGAGGA 59.708 57.895 9.78 0.00 0.00 3.71
990 1020 2.205074 GCCGTCACCATCTTGATAGTG 58.795 52.381 3.40 3.40 0.00 2.74
1176 1233 4.634133 TGCGTCGCGTCCGTCTTT 62.634 61.111 13.38 0.00 35.54 2.52
1506 1563 5.718146 TGTCAATGCAAGAGAAGTAGAGAG 58.282 41.667 0.00 0.00 0.00 3.20
1507 1564 5.728637 TGTCAATGCAAGAGAAGTAGAGA 57.271 39.130 0.00 0.00 0.00 3.10
1509 1566 7.334421 GGTTAATGTCAATGCAAGAGAAGTAGA 59.666 37.037 0.00 0.00 0.00 2.59
1512 1569 5.769662 TGGTTAATGTCAATGCAAGAGAAGT 59.230 36.000 0.00 0.00 0.00 3.01
1515 1572 5.559770 TCTGGTTAATGTCAATGCAAGAGA 58.440 37.500 0.00 0.00 0.00 3.10
1527 1588 3.746492 GTCAGCGAAGTTCTGGTTAATGT 59.254 43.478 0.56 0.00 32.63 2.71
1537 1598 2.087009 CCGTCCGTCAGCGAAGTTC 61.087 63.158 0.00 0.00 41.33 3.01
1541 1602 3.744719 CCTCCGTCCGTCAGCGAA 61.745 66.667 0.00 0.00 41.33 4.70
1543 1604 4.778415 CACCTCCGTCCGTCAGCG 62.778 72.222 0.00 0.00 37.95 5.18
1545 1606 3.006756 ATGCACCTCCGTCCGTCAG 62.007 63.158 0.00 0.00 0.00 3.51
1546 1607 2.994995 ATGCACCTCCGTCCGTCA 60.995 61.111 0.00 0.00 0.00 4.35
1550 1656 2.124570 ATGCATGCACCTCCGTCC 60.125 61.111 25.37 0.00 0.00 4.79
1570 1676 2.360852 ACCAGGCTCTGCATGCAC 60.361 61.111 18.46 7.33 39.11 4.57
1673 1779 2.741092 GTTCTCCACCAGCACCGA 59.259 61.111 0.00 0.00 0.00 4.69
2028 2134 1.136500 GGTAGGAGACGTTGTCCATCC 59.864 57.143 17.55 14.58 36.43 3.51
2167 2291 4.373116 TTGAGCGTGACGGCCTCC 62.373 66.667 7.25 0.00 0.00 4.30
2292 2416 0.317603 CTTGACGACGTTGACGGACT 60.318 55.000 10.51 0.00 44.95 3.85
2346 2470 3.714487 AATGAATCCGGGTGGGCGG 62.714 63.158 0.00 0.00 35.24 6.13
2411 2546 6.764877 ACAAACGTATGATAATAGGAAGCG 57.235 37.500 0.00 0.00 0.00 4.68
2510 2651 5.717119 ACATGCTTGAGCCAAATTCTTAAG 58.283 37.500 6.60 0.00 41.18 1.85
2518 2659 4.083537 CGTAGTTAACATGCTTGAGCCAAA 60.084 41.667 8.61 0.00 41.18 3.28
2524 2665 4.629634 CCATCACGTAGTTAACATGCTTGA 59.370 41.667 8.61 6.98 41.61 3.02
2527 2668 2.936498 GCCATCACGTAGTTAACATGCT 59.064 45.455 8.61 0.00 41.61 3.79
2547 2688 0.106519 AACTATCACCAGGGCCATGC 60.107 55.000 13.13 0.00 0.00 4.06
2549 2690 1.421646 GCTAACTATCACCAGGGCCAT 59.578 52.381 6.18 0.00 0.00 4.40
2575 2716 0.679960 GGTAGATTGTGGTGGGTGCC 60.680 60.000 0.00 0.00 0.00 5.01
2576 2717 0.328258 AGGTAGATTGTGGTGGGTGC 59.672 55.000 0.00 0.00 0.00 5.01
2577 2718 2.420129 GCTAGGTAGATTGTGGTGGGTG 60.420 54.545 0.00 0.00 0.00 4.61
2578 2719 1.838077 GCTAGGTAGATTGTGGTGGGT 59.162 52.381 0.00 0.00 0.00 4.51
2636 2779 2.679355 TGCGATTGTTCCGAAGTTTG 57.321 45.000 0.00 0.00 0.00 2.93
2637 2780 2.356382 TGTTGCGATTGTTCCGAAGTTT 59.644 40.909 0.00 0.00 0.00 2.66
2638 2781 1.944024 TGTTGCGATTGTTCCGAAGTT 59.056 42.857 0.00 0.00 0.00 2.66
2683 2826 4.004196 TCGTTTTCTTCCTTCTTCTCCC 57.996 45.455 0.00 0.00 0.00 4.30
2690 2833 3.906601 GCGTCATTTCGTTTTCTTCCTTC 59.093 43.478 0.00 0.00 0.00 3.46
2742 2886 2.349886 GCCGCATTTCCTCGATGATATC 59.650 50.000 0.00 0.00 0.00 1.63
2743 2887 2.027745 AGCCGCATTTCCTCGATGATAT 60.028 45.455 0.00 0.00 0.00 1.63
2744 2888 1.344438 AGCCGCATTTCCTCGATGATA 59.656 47.619 0.00 0.00 0.00 2.15
2745 2889 0.107456 AGCCGCATTTCCTCGATGAT 59.893 50.000 0.00 0.00 0.00 2.45
2746 2890 0.750249 TAGCCGCATTTCCTCGATGA 59.250 50.000 0.00 0.00 0.00 2.92
2757 2901 5.835113 AACATGATTACTTTTAGCCGCAT 57.165 34.783 0.00 0.00 0.00 4.73
2776 2920 2.193127 CCCCCTAGTGGTGTGATAACA 58.807 52.381 0.00 0.00 0.00 2.41
2786 2930 2.959465 GGATGAATTCCCCCTAGTGG 57.041 55.000 2.27 0.00 38.75 4.00
2816 2970 7.424001 CAGTGGTGGTAAATAGTACTAGTAGC 58.576 42.308 8.85 12.28 0.00 3.58
2822 2976 4.775780 TCAGCAGTGGTGGTAAATAGTACT 59.224 41.667 21.53 0.00 31.49 2.73
2823 2977 5.080969 TCAGCAGTGGTGGTAAATAGTAC 57.919 43.478 21.53 0.00 31.49 2.73
2824 2978 4.382685 GCTCAGCAGTGGTGGTAAATAGTA 60.383 45.833 21.53 0.00 31.49 1.82
2844 2998 2.225467 GCCATGTATCTTGAAGGGCTC 58.775 52.381 0.00 0.00 37.00 4.70
2891 3045 3.753797 GGATGGTCTTCAGTTCTTGGAAC 59.246 47.826 2.57 2.57 0.00 3.62
2908 3062 0.841961 TGAGCCAAGATGGAGGATGG 59.158 55.000 0.00 0.00 40.96 3.51
2914 3068 1.409241 GCTTCCATGAGCCAAGATGGA 60.409 52.381 0.00 0.00 45.27 3.41
2917 3071 0.543277 TCGCTTCCATGAGCCAAGAT 59.457 50.000 0.00 0.00 39.51 2.40
2952 3106 0.953471 TTGGATTCGGAACCTGCACG 60.953 55.000 0.00 0.00 0.00 5.34
2993 3147 4.696877 TGATGTGTGGATGTCATCTGTTTC 59.303 41.667 12.54 4.11 38.78 2.78
2995 3149 4.290711 TGATGTGTGGATGTCATCTGTT 57.709 40.909 12.54 0.00 38.78 3.16
2996 3150 3.986996 TGATGTGTGGATGTCATCTGT 57.013 42.857 12.54 0.00 38.78 3.41
3003 3157 5.930569 CGAAGATGATATGATGTGTGGATGT 59.069 40.000 0.00 0.00 0.00 3.06
3051 3241 7.846066 TGTCCTTTTTCTTTTCTTTTCCATCA 58.154 30.769 0.00 0.00 0.00 3.07
3115 3310 1.290134 AGTTCCTCCAAGATGGGGAC 58.710 55.000 0.00 0.00 41.85 4.46
3154 3349 2.088104 ACGGGCAGAAGGAGATATCA 57.912 50.000 5.32 0.00 0.00 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.