Multiple sequence alignment - TraesCS6A01G158900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G158900 chr6A 100.000 6858 0 0 1 6858 150964085 150970942 0.000000e+00 12665.0
1 TraesCS6A01G158900 chr6D 96.515 6743 133 24 1 6665 127388969 127382251 0.000000e+00 11057.0
2 TraesCS6A01G158900 chr6B 92.663 4307 182 43 447 4703 226405426 226401204 0.000000e+00 6080.0
3 TraesCS6A01G158900 chr6B 93.772 1140 50 10 4786 5923 226401209 226400089 0.000000e+00 1692.0
4 TraesCS6A01G158900 chr6B 82.927 451 27 19 6 406 226406210 226405760 1.820000e-95 361.0
5 TraesCS6A01G158900 chr6B 97.549 204 4 1 6656 6858 342685887 342686090 1.420000e-91 348.0
6 TraesCS6A01G158900 chr6B 79.482 463 42 25 5937 6374 226400109 226399675 5.240000e-71 279.0
7 TraesCS6A01G158900 chr6B 90.411 73 5 1 2137 2209 75961421 75961351 2.040000e-15 95.3
8 TraesCS6A01G158900 chr7B 97.585 207 4 1 6653 6858 469273253 469273047 3.040000e-93 353.0
9 TraesCS6A01G158900 chr7B 97.101 207 3 3 6652 6856 547153100 547152895 5.090000e-91 346.0
10 TraesCS6A01G158900 chr7B 96.635 208 5 2 6649 6856 162766441 162766646 1.830000e-90 344.0
11 TraesCS6A01G158900 chr7B 86.957 138 16 2 2857 2992 4821782 4821919 3.310000e-33 154.0
12 TraesCS6A01G158900 chr7B 86.957 138 16 2 2857 2992 727193706 727193569 3.310000e-33 154.0
13 TraesCS6A01G158900 chr2A 98.980 196 2 0 6663 6858 256970447 256970642 1.090000e-92 351.0
14 TraesCS6A01G158900 chr1B 98.030 203 3 1 6656 6857 371641420 371641218 1.090000e-92 351.0
15 TraesCS6A01G158900 chr1B 98.492 199 2 1 6660 6857 491815957 491816155 3.940000e-92 350.0
16 TraesCS6A01G158900 chr1B 86.957 138 16 2 2857 2992 626110242 626110105 3.310000e-33 154.0
17 TraesCS6A01G158900 chr5B 94.348 230 4 7 6632 6857 403364381 403364605 1.830000e-90 344.0
18 TraesCS6A01G158900 chr5B 86.232 138 17 2 2857 2992 101329567 101329704 1.540000e-31 148.0
19 TraesCS6A01G158900 chr3B 94.521 219 11 1 6640 6857 807197310 807197528 3.060000e-88 337.0
20 TraesCS6A01G158900 chr3B 86.957 138 16 2 2857 2992 821822605 821822742 3.310000e-33 154.0
21 TraesCS6A01G158900 chr4B 86.957 138 16 2 2857 2992 646212953 646212816 3.310000e-33 154.0
22 TraesCS6A01G158900 chr3A 86.232 138 17 2 2857 2992 514460079 514459942 1.540000e-31 148.0
23 TraesCS6A01G158900 chr3D 88.421 95 11 0 1819 1913 363802842 363802936 1.560000e-21 115.0
24 TraesCS6A01G158900 chr3D 81.481 135 16 7 1819 1949 363802420 363802549 1.220000e-17 102.0
25 TraesCS6A01G158900 chrUn 87.368 95 12 0 1819 1913 112535966 112535872 7.270000e-20 110.0
26 TraesCS6A01G158900 chr5A 95.122 41 2 0 1819 1859 311327010 311326970 1.600000e-06 65.8
27 TraesCS6A01G158900 chr5A 95.122 41 2 0 1819 1859 311327866 311327826 1.600000e-06 65.8
28 TraesCS6A01G158900 chr5A 95.122 41 2 0 1819 1859 311328721 311328681 1.600000e-06 65.8
29 TraesCS6A01G158900 chr5A 95.122 41 2 0 1819 1859 311329578 311329538 1.600000e-06 65.8
30 TraesCS6A01G158900 chr7D 100.000 28 0 0 6176 6203 167080919 167080946 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G158900 chr6A 150964085 150970942 6857 False 12665 12665 100.000 1 6858 1 chr6A.!!$F1 6857
1 TraesCS6A01G158900 chr6D 127382251 127388969 6718 True 11057 11057 96.515 1 6665 1 chr6D.!!$R1 6664
2 TraesCS6A01G158900 chr6B 226399675 226406210 6535 True 2103 6080 87.211 6 6374 4 chr6B.!!$R2 6368

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 1018 0.657368 CAAACTTGCACGCGAGTTCC 60.657 55.000 21.85 0.00 46.61 3.62 F
1627 2031 0.322816 GGGCCAATCTCTTGACAGCA 60.323 55.000 4.39 0.00 34.04 4.41 F
2075 2483 1.202336 GGAATGGCATGTACAAGCTGC 60.202 52.381 21.24 15.98 35.16 5.25 F
3474 3883 4.507710 TGTACTGTCCTGATGCTTCAATC 58.492 43.478 3.65 0.00 0.00 2.67 F
4437 4851 0.521291 GCTTGTGTGTGTGTGTGTGT 59.479 50.000 0.00 0.00 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2075 2483 3.557595 GTGCCCGTTCAATAGATTCAGAG 59.442 47.826 0.00 0.0 0.00 3.35 R
2921 3330 7.680982 TCCAACGTAAAATCTGACAATTATCG 58.319 34.615 0.00 0.0 0.00 2.92 R
3856 4269 2.675348 GCACATACAAGGTCTTCAGCTC 59.325 50.000 0.00 0.0 0.00 4.09 R
4442 4856 0.096976 GAGCACACACACACACACAC 59.903 55.000 0.00 0.0 0.00 3.82 R
6429 6876 0.396811 AACAAGGACTTGGAGGTCGG 59.603 55.000 15.72 0.0 44.45 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
481 842 1.455383 CCACCGCTGAGCTTTTTGGT 61.455 55.000 1.78 0.00 0.00 3.67
587 953 4.062293 GTTTCCCTGTTAAATTTGGTGCC 58.938 43.478 0.00 0.00 0.00 5.01
589 955 4.390129 TCCCTGTTAAATTTGGTGCCTA 57.610 40.909 0.00 0.00 0.00 3.93
628 994 3.214328 GTCAGTGGTGGTTGTTTCTGAT 58.786 45.455 0.00 0.00 35.07 2.90
645 1011 3.186409 TCTGATACTTCAAACTTGCACGC 59.814 43.478 0.00 0.00 0.00 5.34
652 1018 0.657368 CAAACTTGCACGCGAGTTCC 60.657 55.000 21.85 0.00 46.61 3.62
674 1050 4.656117 GTTTGGTTTGGGCGCGGG 62.656 66.667 8.83 0.00 0.00 6.13
747 1123 3.341857 TGTTTCGCAATTTAACACGCT 57.658 38.095 0.00 0.00 0.00 5.07
902 1278 9.462606 TCTGTCACATAGATAGAAGAACAGTAA 57.537 33.333 0.00 0.00 40.94 2.24
1475 1879 4.741185 GTGTAAACGGGAAATGTTTGGTTC 59.259 41.667 1.62 0.00 39.69 3.62
1627 2031 0.322816 GGGCCAATCTCTTGACAGCA 60.323 55.000 4.39 0.00 34.04 4.41
2075 2483 1.202336 GGAATGGCATGTACAAGCTGC 60.202 52.381 21.24 15.98 35.16 5.25
2755 3163 7.173722 ACATCTTGATGTTGATTCCTTCTCTT 58.826 34.615 10.15 0.00 0.00 2.85
2921 3330 8.918658 TGTGTCTTACGTATTTCACTTTGTATC 58.081 33.333 18.24 0.22 0.00 2.24
3474 3883 4.507710 TGTACTGTCCTGATGCTTCAATC 58.492 43.478 3.65 0.00 0.00 2.67
3856 4269 1.604185 GCCTAGACTCGGCTAGCATTG 60.604 57.143 18.24 7.76 44.17 2.82
4086 4500 4.443978 AGTATGATATTTGCTGCCAGGT 57.556 40.909 0.00 0.00 0.00 4.00
4436 4850 0.804364 AGCTTGTGTGTGTGTGTGTG 59.196 50.000 0.00 0.00 0.00 3.82
4437 4851 0.521291 GCTTGTGTGTGTGTGTGTGT 59.479 50.000 0.00 0.00 0.00 3.72
4438 4852 1.728825 GCTTGTGTGTGTGTGTGTGTG 60.729 52.381 0.00 0.00 0.00 3.82
4439 4853 1.535028 CTTGTGTGTGTGTGTGTGTGT 59.465 47.619 0.00 0.00 0.00 3.72
4440 4854 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4441 4855 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4442 4856 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4443 4857 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4444 4858 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4445 4859 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4446 4860 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4447 4861 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4448 4862 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4449 4863 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4450 4864 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4451 4865 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4758 5172 6.382608 CAGACACCATATGATACGTTCCTAG 58.617 44.000 3.65 0.00 0.00 3.02
5372 5786 1.892209 TTTCTCTTTTCGGCAGGGAC 58.108 50.000 0.00 0.00 0.00 4.46
5416 5830 3.686691 GCATTCCTGCTTACTCCATTCCT 60.687 47.826 0.00 0.00 45.32 3.36
5434 5848 0.882042 CTGCACAGACGCAAGGACTT 60.882 55.000 0.00 0.00 42.45 3.01
5549 5963 3.069980 GAGGCCGCTGACATCGTCT 62.070 63.158 0.00 0.00 33.15 4.18
5566 5980 2.159184 CGTCTTGATGAAGAGCAGCCTA 60.159 50.000 0.00 0.00 38.95 3.93
6001 6420 1.598130 GCACCTTGAACTGACGCCT 60.598 57.895 0.00 0.00 0.00 5.52
6091 6515 3.363341 TTTCCTTTTGTGCGGAATGAC 57.637 42.857 0.00 0.00 38.95 3.06
6223 6649 3.781307 TCCGGACCAATCTGCGGG 61.781 66.667 0.00 0.00 32.30 6.13
6252 6684 1.262417 CTGATGTCGGCAATCCAATCG 59.738 52.381 0.00 0.00 0.00 3.34
6256 6688 1.066787 TGTCGGCAATCCAATCGTACA 60.067 47.619 0.00 0.00 0.00 2.90
6299 6740 9.480053 CTGATTTGAACAAATTGGACTATGTTT 57.520 29.630 12.91 0.00 40.77 2.83
6308 6749 8.367156 ACAAATTGGACTATGTTTATGCAAACT 58.633 29.630 0.00 0.00 43.73 2.66
6376 6822 9.979578 TGACATACTTCAATAAACAAAAGCATT 57.020 25.926 0.00 0.00 0.00 3.56
6404 6851 7.660208 GGAAGTTAACTGTCTAAATCTTCACCA 59.340 37.037 9.34 0.00 33.91 4.17
6406 6853 7.736893 AGTTAACTGTCTAAATCTTCACCAGT 58.263 34.615 7.48 0.00 33.40 4.00
6426 6873 1.589414 AGCCATGAGCCCTAGAAAGT 58.411 50.000 0.00 0.00 45.47 2.66
6429 6876 2.911484 CCATGAGCCCTAGAAAGTGTC 58.089 52.381 0.00 0.00 0.00 3.67
6430 6877 2.420687 CCATGAGCCCTAGAAAGTGTCC 60.421 54.545 0.00 0.00 0.00 4.02
6453 6900 2.509964 ACCTCCAAGTCCTTGTTGTTCT 59.490 45.455 6.31 0.00 38.85 3.01
6466 6934 3.869065 TGTTGTTCTCCTTCGTTGTTCT 58.131 40.909 0.00 0.00 0.00 3.01
6471 6939 3.662247 TCTCCTTCGTTGTTCTCCTTC 57.338 47.619 0.00 0.00 0.00 3.46
6510 6978 2.165319 GTGAGCCACGGAAGTTTAGT 57.835 50.000 0.00 0.00 46.40 2.24
6511 6979 2.490991 GTGAGCCACGGAAGTTTAGTT 58.509 47.619 0.00 0.00 46.40 2.24
6520 6988 2.093783 CGGAAGTTTAGTTGCGGTCATC 59.906 50.000 3.63 0.00 37.59 2.92
6537 7005 1.280133 CATCGGCATAGGACATGGGAT 59.720 52.381 0.00 0.00 0.00 3.85
6539 7007 1.899814 TCGGCATAGGACATGGGATAC 59.100 52.381 0.00 0.00 0.00 2.24
6540 7008 1.623311 CGGCATAGGACATGGGATACA 59.377 52.381 0.00 0.00 39.74 2.29
6550 7018 1.134401 CATGGGATACAAGGTGTCGCT 60.134 52.381 10.51 0.00 37.47 4.93
6565 7033 3.200593 GCTGTCTCGCATGCCCTG 61.201 66.667 13.15 2.33 0.00 4.45
6624 7092 1.837439 AGGTGAGGTTGGCGATGAATA 59.163 47.619 0.00 0.00 0.00 1.75
6662 7130 2.388232 GCGCCAACGGGACTAGTTG 61.388 63.158 0.00 2.43 46.06 3.16
6665 7133 3.870606 CAACGGGACTAGTTGGCG 58.129 61.111 0.00 0.00 43.64 5.69
6666 7134 1.740296 CAACGGGACTAGTTGGCGG 60.740 63.158 0.00 0.00 43.64 6.13
6667 7135 2.212110 AACGGGACTAGTTGGCGGT 61.212 57.895 0.00 0.00 0.00 5.68
6668 7136 2.125673 CGGGACTAGTTGGCGGTG 60.126 66.667 0.00 0.00 0.00 4.94
6669 7137 2.939261 CGGGACTAGTTGGCGGTGT 61.939 63.158 0.00 0.00 0.00 4.16
6670 7138 1.079336 GGGACTAGTTGGCGGTGTC 60.079 63.158 0.00 0.00 0.00 3.67
6671 7139 1.445582 GGACTAGTTGGCGGTGTCG 60.446 63.158 0.00 0.00 39.81 4.35
6672 7140 1.445582 GACTAGTTGGCGGTGTCGG 60.446 63.158 0.00 0.00 36.79 4.79
6673 7141 2.151049 GACTAGTTGGCGGTGTCGGT 62.151 60.000 0.00 0.00 36.79 4.69
6674 7142 1.736645 CTAGTTGGCGGTGTCGGTG 60.737 63.158 0.00 0.00 36.79 4.94
6675 7143 2.430382 CTAGTTGGCGGTGTCGGTGT 62.430 60.000 0.00 0.00 36.79 4.16
6676 7144 2.424705 TAGTTGGCGGTGTCGGTGTC 62.425 60.000 0.00 0.00 36.79 3.67
6677 7145 3.851128 TTGGCGGTGTCGGTGTCA 61.851 61.111 0.00 0.00 36.79 3.58
6678 7146 3.387225 TTGGCGGTGTCGGTGTCAA 62.387 57.895 0.00 0.00 36.79 3.18
6679 7147 2.589442 GGCGGTGTCGGTGTCAAA 60.589 61.111 0.00 0.00 36.79 2.69
6680 7148 2.181521 GGCGGTGTCGGTGTCAAAA 61.182 57.895 0.00 0.00 36.79 2.44
6681 7149 1.010462 GCGGTGTCGGTGTCAAAAC 60.010 57.895 0.00 0.00 36.79 2.43
6682 7150 1.644913 CGGTGTCGGTGTCAAAACC 59.355 57.895 0.00 0.00 36.82 3.27
6688 7156 2.592287 GGTGTCAAAACCGGCGGA 60.592 61.111 35.78 6.54 0.00 5.54
6689 7157 1.969589 GGTGTCAAAACCGGCGGAT 60.970 57.895 35.78 20.37 0.00 4.18
6690 7158 1.500396 GTGTCAAAACCGGCGGATC 59.500 57.895 35.78 9.52 0.00 3.36
6691 7159 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
6692 7160 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
6693 7161 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
6698 7166 3.671411 CCGGCGGATCTCGGGTAG 61.671 72.222 24.41 0.00 42.32 3.18
6699 7167 3.671411 CGGCGGATCTCGGGTAGG 61.671 72.222 0.00 0.00 39.69 3.18
6700 7168 3.303928 GGCGGATCTCGGGTAGGG 61.304 72.222 5.87 0.00 39.69 3.53
6701 7169 3.303928 GCGGATCTCGGGTAGGGG 61.304 72.222 5.87 0.00 39.69 4.79
6702 7170 2.600769 CGGATCTCGGGTAGGGGG 60.601 72.222 0.00 0.00 34.75 5.40
6703 7171 2.613421 GGATCTCGGGTAGGGGGT 59.387 66.667 0.00 0.00 0.00 4.95
6704 7172 1.533513 GGATCTCGGGTAGGGGGTC 60.534 68.421 0.00 0.00 0.00 4.46
6705 7173 1.533513 GATCTCGGGTAGGGGGTCC 60.534 68.421 0.00 0.00 0.00 4.46
6706 7174 3.097429 ATCTCGGGTAGGGGGTCCC 62.097 68.421 0.00 0.00 45.90 4.46
6715 7183 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
6717 7185 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
6718 7186 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
6719 7187 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
6720 7188 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
6721 7189 0.456312 GTCCCGAACTGTGCGTCTAG 60.456 60.000 7.51 0.00 0.00 2.43
6722 7190 1.153823 CCCGAACTGTGCGTCTAGG 60.154 63.158 7.51 0.00 0.00 3.02
6723 7191 1.805945 CCGAACTGTGCGTCTAGGC 60.806 63.158 7.51 0.00 0.00 3.93
6724 7192 2.152699 CGAACTGTGCGTCTAGGCG 61.153 63.158 13.55 13.55 35.06 5.52
6725 7193 1.805945 GAACTGTGCGTCTAGGCGG 60.806 63.158 19.86 3.85 35.06 6.13
6726 7194 2.209064 GAACTGTGCGTCTAGGCGGA 62.209 60.000 19.86 14.02 35.06 5.54
6727 7195 1.605058 AACTGTGCGTCTAGGCGGAT 61.605 55.000 19.86 0.00 34.24 4.18
6728 7196 1.589993 CTGTGCGTCTAGGCGGATG 60.590 63.158 19.86 9.25 34.24 3.51
6729 7197 2.279517 GTGCGTCTAGGCGGATGG 60.280 66.667 19.86 0.00 34.24 3.51
6730 7198 2.758327 TGCGTCTAGGCGGATGGT 60.758 61.111 19.86 0.00 35.06 3.55
6731 7199 1.454295 TGCGTCTAGGCGGATGGTA 60.454 57.895 19.86 0.00 35.06 3.25
6732 7200 1.038681 TGCGTCTAGGCGGATGGTAA 61.039 55.000 19.86 0.00 35.06 2.85
6733 7201 0.596859 GCGTCTAGGCGGATGGTAAC 60.597 60.000 19.86 0.00 0.00 2.50
6746 7214 2.409064 TGGTAACAGGAGACAAGGGA 57.591 50.000 0.00 0.00 46.17 4.20
6747 7215 1.975680 TGGTAACAGGAGACAAGGGAC 59.024 52.381 0.00 0.00 46.17 4.46
6748 7216 1.975680 GGTAACAGGAGACAAGGGACA 59.024 52.381 0.00 0.00 0.00 4.02
6749 7217 2.289506 GGTAACAGGAGACAAGGGACAC 60.290 54.545 0.00 0.00 0.00 3.67
6750 7218 0.393077 AACAGGAGACAAGGGACACG 59.607 55.000 0.00 0.00 0.00 4.49
6751 7219 0.469331 ACAGGAGACAAGGGACACGA 60.469 55.000 0.00 0.00 0.00 4.35
6752 7220 0.898320 CAGGAGACAAGGGACACGAT 59.102 55.000 0.00 0.00 0.00 3.73
6753 7221 0.898320 AGGAGACAAGGGACACGATG 59.102 55.000 0.00 0.00 0.00 3.84
6754 7222 0.608640 GGAGACAAGGGACACGATGT 59.391 55.000 0.00 0.00 0.00 3.06
6755 7223 1.002087 GGAGACAAGGGACACGATGTT 59.998 52.381 0.00 0.00 0.00 2.71
6756 7224 2.550208 GGAGACAAGGGACACGATGTTT 60.550 50.000 0.00 0.00 0.00 2.83
6757 7225 3.139077 GAGACAAGGGACACGATGTTTT 58.861 45.455 0.00 0.00 0.00 2.43
6758 7226 3.551846 AGACAAGGGACACGATGTTTTT 58.448 40.909 0.00 0.00 0.00 1.94
6759 7227 4.710324 AGACAAGGGACACGATGTTTTTA 58.290 39.130 0.00 0.00 0.00 1.52
6760 7228 5.313712 AGACAAGGGACACGATGTTTTTAT 58.686 37.500 0.00 0.00 0.00 1.40
6761 7229 5.411669 AGACAAGGGACACGATGTTTTTATC 59.588 40.000 0.00 0.00 0.00 1.75
6762 7230 4.457949 ACAAGGGACACGATGTTTTTATCC 59.542 41.667 0.00 0.00 0.00 2.59
6763 7231 4.295141 AGGGACACGATGTTTTTATCCA 57.705 40.909 0.00 0.00 0.00 3.41
6764 7232 4.261801 AGGGACACGATGTTTTTATCCAG 58.738 43.478 0.00 0.00 0.00 3.86
6765 7233 3.377172 GGGACACGATGTTTTTATCCAGG 59.623 47.826 0.00 0.00 0.00 4.45
6766 7234 4.007659 GGACACGATGTTTTTATCCAGGT 58.992 43.478 0.00 0.00 0.00 4.00
6767 7235 4.457949 GGACACGATGTTTTTATCCAGGTT 59.542 41.667 0.00 0.00 0.00 3.50
6768 7236 5.391629 GGACACGATGTTTTTATCCAGGTTC 60.392 44.000 0.00 0.00 0.00 3.62
6769 7237 4.153475 ACACGATGTTTTTATCCAGGTTCG 59.847 41.667 0.00 0.00 0.00 3.95
6770 7238 3.687698 ACGATGTTTTTATCCAGGTTCGG 59.312 43.478 0.00 0.00 0.00 4.30
6771 7239 3.064820 CGATGTTTTTATCCAGGTTCGGG 59.935 47.826 0.00 0.00 0.00 5.14
6772 7240 2.164338 TGTTTTTATCCAGGTTCGGGC 58.836 47.619 0.00 0.00 0.00 6.13
6773 7241 1.475280 GTTTTTATCCAGGTTCGGGCC 59.525 52.381 0.00 0.00 0.00 5.80
6774 7242 0.033894 TTTTATCCAGGTTCGGGCCC 60.034 55.000 13.57 13.57 0.00 5.80
6775 7243 0.917333 TTTATCCAGGTTCGGGCCCT 60.917 55.000 22.43 0.00 0.00 5.19
6776 7244 1.342672 TTATCCAGGTTCGGGCCCTC 61.343 60.000 22.43 10.12 0.00 4.30
6777 7245 2.252012 TATCCAGGTTCGGGCCCTCT 62.252 60.000 22.43 9.13 0.00 3.69
6778 7246 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
6779 7247 4.148825 CAGGTTCGGGCCCTCTCG 62.149 72.222 22.43 6.49 0.00 4.04
6780 7248 4.377760 AGGTTCGGGCCCTCTCGA 62.378 66.667 22.43 9.26 0.00 4.04
6781 7249 3.155167 GGTTCGGGCCCTCTCGAT 61.155 66.667 22.43 0.00 35.25 3.59
6782 7250 2.107141 GTTCGGGCCCTCTCGATG 59.893 66.667 22.43 1.43 35.25 3.84
6783 7251 3.154473 TTCGGGCCCTCTCGATGG 61.154 66.667 22.43 0.54 35.25 3.51
6784 7252 3.672338 TTCGGGCCCTCTCGATGGA 62.672 63.158 22.43 3.53 35.25 3.41
6785 7253 3.610669 CGGGCCCTCTCGATGGAG 61.611 72.222 22.43 0.00 41.89 3.86
6793 7261 3.180891 CCTCTCGATGGAGGTAAAACC 57.819 52.381 11.66 0.00 45.65 3.27
6794 7262 2.158943 CCTCTCGATGGAGGTAAAACCC 60.159 54.545 11.66 0.00 45.65 4.11
6795 7263 2.766828 CTCTCGATGGAGGTAAAACCCT 59.233 50.000 4.78 0.00 39.75 4.34
6796 7264 3.958798 CTCTCGATGGAGGTAAAACCCTA 59.041 47.826 4.78 0.00 39.75 3.53
6797 7265 3.703052 TCTCGATGGAGGTAAAACCCTAC 59.297 47.826 4.78 0.00 39.75 3.18
6798 7266 3.705072 CTCGATGGAGGTAAAACCCTACT 59.295 47.826 0.00 0.00 39.75 2.57
6799 7267 3.703052 TCGATGGAGGTAAAACCCTACTC 59.297 47.826 0.00 0.00 39.75 2.59
6800 7268 3.181468 CGATGGAGGTAAAACCCTACTCC 60.181 52.174 0.00 0.00 39.75 3.85
6801 7269 3.572661 TGGAGGTAAAACCCTACTCCT 57.427 47.619 10.05 0.00 39.75 3.69
6802 7270 3.178865 TGGAGGTAAAACCCTACTCCTG 58.821 50.000 10.05 0.00 39.75 3.86
6803 7271 2.093075 GGAGGTAAAACCCTACTCCTGC 60.093 54.545 0.00 0.00 39.75 4.85
6804 7272 2.838813 GAGGTAAAACCCTACTCCTGCT 59.161 50.000 0.00 0.00 39.75 4.24
6805 7273 3.257578 AGGTAAAACCCTACTCCTGCTT 58.742 45.455 0.00 0.00 39.75 3.91
6806 7274 3.009143 AGGTAAAACCCTACTCCTGCTTG 59.991 47.826 0.00 0.00 39.75 4.01
6807 7275 3.008704 GGTAAAACCCTACTCCTGCTTGA 59.991 47.826 0.00 0.00 30.04 3.02
6808 7276 4.324331 GGTAAAACCCTACTCCTGCTTGAT 60.324 45.833 0.00 0.00 30.04 2.57
6809 7277 4.388577 AAAACCCTACTCCTGCTTGATT 57.611 40.909 0.00 0.00 0.00 2.57
6810 7278 5.514500 AAAACCCTACTCCTGCTTGATTA 57.486 39.130 0.00 0.00 0.00 1.75
6811 7279 5.514500 AAACCCTACTCCTGCTTGATTAA 57.486 39.130 0.00 0.00 0.00 1.40
6812 7280 5.717119 AACCCTACTCCTGCTTGATTAAT 57.283 39.130 0.00 0.00 0.00 1.40
6813 7281 6.824958 AACCCTACTCCTGCTTGATTAATA 57.175 37.500 0.00 0.00 0.00 0.98
6814 7282 7.394144 AACCCTACTCCTGCTTGATTAATAT 57.606 36.000 0.00 0.00 0.00 1.28
6815 7283 7.394144 ACCCTACTCCTGCTTGATTAATATT 57.606 36.000 0.00 0.00 0.00 1.28
6816 7284 7.227156 ACCCTACTCCTGCTTGATTAATATTG 58.773 38.462 0.00 0.00 0.00 1.90
6817 7285 7.072454 ACCCTACTCCTGCTTGATTAATATTGA 59.928 37.037 0.00 0.00 0.00 2.57
6818 7286 8.105829 CCCTACTCCTGCTTGATTAATATTGAT 58.894 37.037 0.00 0.00 0.00 2.57
6819 7287 8.944029 CCTACTCCTGCTTGATTAATATTGATG 58.056 37.037 0.00 0.00 0.00 3.07
6820 7288 9.716531 CTACTCCTGCTTGATTAATATTGATGA 57.283 33.333 0.00 0.00 0.00 2.92
6827 7295 9.758021 TGCTTGATTAATATTGATGATATGGGT 57.242 29.630 0.00 0.00 31.27 4.51
6838 7306 7.914427 TTGATGATATGGGTAGTACAAGAGT 57.086 36.000 2.06 0.00 0.00 3.24
6839 7307 9.601810 ATTGATGATATGGGTAGTACAAGAGTA 57.398 33.333 2.06 0.00 0.00 2.59
6840 7308 8.637196 TGATGATATGGGTAGTACAAGAGTAG 57.363 38.462 2.06 0.00 0.00 2.57
6841 7309 8.445588 TGATGATATGGGTAGTACAAGAGTAGA 58.554 37.037 2.06 0.00 0.00 2.59
6842 7310 9.469097 GATGATATGGGTAGTACAAGAGTAGAT 57.531 37.037 2.06 0.00 0.00 1.98
6843 7311 8.865420 TGATATGGGTAGTACAAGAGTAGATC 57.135 38.462 2.06 0.00 0.00 2.75
6844 7312 8.670490 TGATATGGGTAGTACAAGAGTAGATCT 58.330 37.037 0.00 0.00 41.27 2.75
6846 7314 9.962809 ATATGGGTAGTACAAGAGTAGATCTAC 57.037 37.037 22.97 22.97 37.23 2.59
6847 7315 6.599445 TGGGTAGTACAAGAGTAGATCTACC 58.401 44.000 25.93 18.03 41.83 3.18
6848 7316 6.159222 TGGGTAGTACAAGAGTAGATCTACCA 59.841 42.308 25.93 11.57 43.02 3.25
6849 7317 6.486320 GGGTAGTACAAGAGTAGATCTACCAC 59.514 46.154 25.93 20.17 43.02 4.16
6850 7318 6.202570 GGTAGTACAAGAGTAGATCTACCACG 59.797 46.154 25.93 15.78 41.98 4.94
6851 7319 5.987098 AGTACAAGAGTAGATCTACCACGA 58.013 41.667 25.93 7.35 37.23 4.35
6852 7320 6.050432 AGTACAAGAGTAGATCTACCACGAG 58.950 44.000 25.93 18.86 37.23 4.18
6853 7321 5.100344 ACAAGAGTAGATCTACCACGAGA 57.900 43.478 25.93 0.00 37.23 4.04
6854 7322 5.686753 ACAAGAGTAGATCTACCACGAGAT 58.313 41.667 25.93 8.56 37.23 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
266 312 4.069232 CGCGGCAAGAGGACTGGA 62.069 66.667 0.00 0.00 0.00 3.86
380 446 4.893601 GCGGGCTCTAGGGTTCGC 62.894 72.222 14.02 14.02 36.51 4.70
503 864 0.030908 CGTACCAGAGAGCGGAATCC 59.969 60.000 0.00 0.00 0.00 3.01
587 953 2.397252 GCGCGCAAACAGCTCTAG 59.603 61.111 29.10 0.00 42.61 2.43
628 994 1.525197 CTCGCGTGCAAGTTTGAAGTA 59.475 47.619 5.77 0.00 0.00 2.24
645 1011 3.443976 CAAACCAAACCAAAGGAACTCG 58.556 45.455 0.00 0.00 38.49 4.18
652 1018 1.157257 GCGCCCAAACCAAACCAAAG 61.157 55.000 0.00 0.00 0.00 2.77
674 1050 7.938034 CCATAAATCATGCAGCAGATTTTGCC 61.938 42.308 25.14 0.00 42.59 4.52
697 1073 6.452494 TTCTCAACGATTTGTTTTTACCCA 57.548 33.333 0.00 0.00 39.29 4.51
747 1123 4.222588 CCCCAAATCTTCAGCCAAATAACA 59.777 41.667 0.00 0.00 0.00 2.41
836 1212 5.186992 TGCATTAGAAGTACAGACAGCCTAA 59.813 40.000 0.00 0.00 0.00 2.69
902 1278 6.543831 GTCAGAACCTATTAATGGAGTGCAAT 59.456 38.462 0.00 0.00 0.00 3.56
1475 1879 5.500234 TGTAGGACAAAATTCATCTCCTGG 58.500 41.667 0.00 0.00 33.28 4.45
2075 2483 3.557595 GTGCCCGTTCAATAGATTCAGAG 59.442 47.826 0.00 0.00 0.00 3.35
2921 3330 7.680982 TCCAACGTAAAATCTGACAATTATCG 58.319 34.615 0.00 0.00 0.00 2.92
3803 4216 6.868339 TCATATCGGTCATGTACATCACATTC 59.132 38.462 12.22 0.00 46.01 2.67
3822 4235 5.350365 CGAGTCTAGGCTGACTACTCATATC 59.650 48.000 0.00 4.89 46.11 1.63
3856 4269 2.675348 GCACATACAAGGTCTTCAGCTC 59.325 50.000 0.00 0.00 0.00 4.09
4436 4850 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4437 4851 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4438 4852 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4439 4853 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4440 4854 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
4441 4855 0.605050 AGCACACACACACACACACA 60.605 50.000 0.00 0.00 0.00 3.72
4442 4856 0.096976 GAGCACACACACACACACAC 59.903 55.000 0.00 0.00 0.00 3.82
4443 4857 1.357991 CGAGCACACACACACACACA 61.358 55.000 0.00 0.00 0.00 3.72
4444 4858 1.348250 CGAGCACACACACACACAC 59.652 57.895 0.00 0.00 0.00 3.82
4445 4859 1.079474 ACGAGCACACACACACACA 60.079 52.632 0.00 0.00 0.00 3.72
4446 4860 1.348250 CACGAGCACACACACACAC 59.652 57.895 0.00 0.00 0.00 3.82
4447 4861 2.460275 GCACGAGCACACACACACA 61.460 57.895 0.00 0.00 41.58 3.72
4448 4862 2.324477 GCACGAGCACACACACAC 59.676 61.111 0.00 0.00 41.58 3.82
4449 4863 2.969677 ATCGCACGAGCACACACACA 62.970 55.000 5.50 0.00 42.27 3.72
4450 4864 1.006825 TATCGCACGAGCACACACAC 61.007 55.000 5.50 0.00 42.27 3.82
4451 4865 1.006825 GTATCGCACGAGCACACACA 61.007 55.000 5.50 0.00 42.27 3.72
5301 5715 3.072915 TCTCAGCTTTTCCAACTGGATCA 59.927 43.478 0.00 0.00 44.98 2.92
5372 5786 6.804677 TGCAAAATGTAATGCCAGGTAATAG 58.195 36.000 0.00 0.00 41.87 1.73
5416 5830 1.146041 AAGTCCTTGCGTCTGTGCA 59.854 52.632 0.00 0.00 44.61 4.57
5549 5963 2.093288 CCACTAGGCTGCTCTTCATCAA 60.093 50.000 0.00 0.00 0.00 2.57
5650 6064 3.405093 GATCGGCATGCCCAGGACA 62.405 63.158 30.79 8.29 0.00 4.02
5674 6088 4.675029 AACGGGAACAGGACGCCG 62.675 66.667 0.00 0.00 0.00 6.46
5743 6157 2.485582 CAGACGACGCTCACCGAT 59.514 61.111 0.00 0.00 41.02 4.18
6001 6420 2.625790 AGCAAACAGGGCGTTTTCAATA 59.374 40.909 0.00 0.00 45.79 1.90
6376 6822 7.597743 GTGAAGATTTAGACAGTTAACTTCCGA 59.402 37.037 5.07 0.00 33.84 4.55
6404 6851 2.478872 TTCTAGGGCTCATGGCTACT 57.521 50.000 6.20 7.35 41.46 2.57
6406 6853 2.435805 CACTTTCTAGGGCTCATGGCTA 59.564 50.000 6.20 0.00 41.46 3.93
6426 6873 0.471211 AAGGACTTGGAGGTCGGACA 60.471 55.000 10.76 0.00 37.12 4.02
6429 6876 0.396811 AACAAGGACTTGGAGGTCGG 59.603 55.000 15.72 0.00 44.45 4.79
6430 6877 1.202651 ACAACAAGGACTTGGAGGTCG 60.203 52.381 15.72 1.37 44.45 4.79
6453 6900 1.684983 ACGAAGGAGAACAACGAAGGA 59.315 47.619 0.00 0.00 0.00 3.36
6502 6970 2.073816 CCGATGACCGCAACTAAACTT 58.926 47.619 0.00 0.00 36.84 2.66
6503 6971 1.722011 CCGATGACCGCAACTAAACT 58.278 50.000 0.00 0.00 36.84 2.66
6504 6972 0.096454 GCCGATGACCGCAACTAAAC 59.904 55.000 0.00 0.00 36.84 2.01
6505 6973 0.320858 TGCCGATGACCGCAACTAAA 60.321 50.000 0.00 0.00 36.84 1.85
6506 6974 0.107897 ATGCCGATGACCGCAACTAA 60.108 50.000 0.00 0.00 36.84 2.24
6507 6975 0.747852 TATGCCGATGACCGCAACTA 59.252 50.000 0.00 0.00 36.84 2.24
6508 6976 0.530650 CTATGCCGATGACCGCAACT 60.531 55.000 0.00 0.00 36.84 3.16
6509 6977 1.498865 CCTATGCCGATGACCGCAAC 61.499 60.000 0.00 0.00 36.84 4.17
6510 6978 1.227527 CCTATGCCGATGACCGCAA 60.228 57.895 0.00 0.00 36.84 4.85
6511 6979 2.131067 TCCTATGCCGATGACCGCA 61.131 57.895 0.00 0.00 36.84 5.69
6520 6988 1.623311 TGTATCCCATGTCCTATGCCG 59.377 52.381 0.00 0.00 0.00 5.69
6537 7005 0.240145 CGAGACAGCGACACCTTGTA 59.760 55.000 0.00 0.00 0.00 2.41
6539 7007 2.375766 GCGAGACAGCGACACCTTG 61.376 63.158 0.00 0.00 0.00 3.61
6540 7008 2.049063 GCGAGACAGCGACACCTT 60.049 61.111 0.00 0.00 0.00 3.50
6565 7033 2.811317 CGGACTGCGACAAGGAGC 60.811 66.667 0.00 0.00 42.62 4.70
6596 7064 1.302832 CAACCTCACCTCCACTGGC 60.303 63.158 0.00 0.00 0.00 4.85
6600 7068 2.185310 ATCGCCAACCTCACCTCCAC 62.185 60.000 0.00 0.00 0.00 4.02
6624 7092 3.882326 CGAGGCTGGCCCATCCAT 61.882 66.667 6.36 0.00 45.50 3.41
6650 7118 2.602568 ACCGCCAACTAGTCCCGT 60.603 61.111 0.00 0.00 0.00 5.28
6662 7130 2.181521 TTTTGACACCGACACCGCC 61.182 57.895 0.00 0.00 0.00 6.13
6671 7139 1.918868 GATCCGCCGGTTTTGACACC 61.919 60.000 1.63 0.00 0.00 4.16
6672 7140 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
6673 7141 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
6674 7142 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
6675 7143 1.447140 CGAGATCCGCCGGTTTTGA 60.447 57.895 1.63 0.00 0.00 2.69
6676 7144 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
6677 7145 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
6678 7146 4.157120 CCCGAGATCCGCCGGTTT 62.157 66.667 1.63 0.00 43.93 3.27
6680 7148 4.511246 TACCCGAGATCCGCCGGT 62.511 66.667 1.63 11.60 43.93 5.28
6681 7149 3.671411 CTACCCGAGATCCGCCGG 61.671 72.222 0.00 0.00 44.94 6.13
6682 7150 3.671411 CCTACCCGAGATCCGCCG 61.671 72.222 0.00 0.00 36.84 6.46
6683 7151 3.303928 CCCTACCCGAGATCCGCC 61.304 72.222 0.00 0.00 36.84 6.13
6684 7152 3.303928 CCCCTACCCGAGATCCGC 61.304 72.222 0.00 0.00 36.84 5.54
6685 7153 2.600769 CCCCCTACCCGAGATCCG 60.601 72.222 0.00 0.00 38.18 4.18
6686 7154 1.533513 GACCCCCTACCCGAGATCC 60.534 68.421 0.00 0.00 0.00 3.36
6687 7155 1.533513 GGACCCCCTACCCGAGATC 60.534 68.421 0.00 0.00 0.00 2.75
6688 7156 2.613421 GGACCCCCTACCCGAGAT 59.387 66.667 0.00 0.00 0.00 2.75
6689 7157 3.759101 GGGACCCCCTACCCGAGA 61.759 72.222 0.00 0.00 41.34 4.04
6693 7161 3.085947 GTTCGGGACCCCCTACCC 61.086 72.222 4.46 0.00 42.67 3.69
6694 7162 2.040114 AGTTCGGGACCCCCTACC 59.960 66.667 4.46 0.00 42.67 3.18
6695 7163 1.611556 ACAGTTCGGGACCCCCTAC 60.612 63.158 4.46 0.29 42.67 3.18
6696 7164 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
6697 7165 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
6698 7166 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
6700 7168 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
6701 7169 1.870055 TAGACGCACAGTTCGGGACC 61.870 60.000 0.00 0.00 0.00 4.46
6702 7170 0.456312 CTAGACGCACAGTTCGGGAC 60.456 60.000 0.00 0.00 0.00 4.46
6703 7171 1.592400 CCTAGACGCACAGTTCGGGA 61.592 60.000 0.00 0.00 0.00 5.14
6704 7172 1.153823 CCTAGACGCACAGTTCGGG 60.154 63.158 0.00 0.00 0.00 5.14
6705 7173 1.805945 GCCTAGACGCACAGTTCGG 60.806 63.158 0.00 0.00 0.00 4.30
6706 7174 2.152699 CGCCTAGACGCACAGTTCG 61.153 63.158 0.00 0.00 0.00 3.95
6707 7175 1.805945 CCGCCTAGACGCACAGTTC 60.806 63.158 0.00 0.00 0.00 3.01
6708 7176 1.605058 ATCCGCCTAGACGCACAGTT 61.605 55.000 0.00 0.00 0.00 3.16
6709 7177 2.052690 ATCCGCCTAGACGCACAGT 61.053 57.895 0.00 0.00 0.00 3.55
6710 7178 1.589993 CATCCGCCTAGACGCACAG 60.590 63.158 0.00 0.00 0.00 3.66
6711 7179 2.494445 CATCCGCCTAGACGCACA 59.506 61.111 0.00 0.00 0.00 4.57
6712 7180 1.731433 TACCATCCGCCTAGACGCAC 61.731 60.000 0.00 0.00 0.00 5.34
6713 7181 1.038681 TTACCATCCGCCTAGACGCA 61.039 55.000 0.00 0.00 0.00 5.24
6714 7182 0.596859 GTTACCATCCGCCTAGACGC 60.597 60.000 0.00 0.00 0.00 5.19
6715 7183 0.742505 TGTTACCATCCGCCTAGACG 59.257 55.000 0.00 0.00 0.00 4.18
6716 7184 1.068741 CCTGTTACCATCCGCCTAGAC 59.931 57.143 0.00 0.00 0.00 2.59
6717 7185 1.063492 TCCTGTTACCATCCGCCTAGA 60.063 52.381 0.00 0.00 0.00 2.43
6718 7186 1.341531 CTCCTGTTACCATCCGCCTAG 59.658 57.143 0.00 0.00 0.00 3.02
6719 7187 1.063492 TCTCCTGTTACCATCCGCCTA 60.063 52.381 0.00 0.00 0.00 3.93
6720 7188 0.325296 TCTCCTGTTACCATCCGCCT 60.325 55.000 0.00 0.00 0.00 5.52
6721 7189 0.179081 GTCTCCTGTTACCATCCGCC 60.179 60.000 0.00 0.00 0.00 6.13
6722 7190 0.535335 TGTCTCCTGTTACCATCCGC 59.465 55.000 0.00 0.00 0.00 5.54
6723 7191 2.418746 CCTTGTCTCCTGTTACCATCCG 60.419 54.545 0.00 0.00 0.00 4.18
6724 7192 2.092914 CCCTTGTCTCCTGTTACCATCC 60.093 54.545 0.00 0.00 0.00 3.51
6725 7193 2.838202 TCCCTTGTCTCCTGTTACCATC 59.162 50.000 0.00 0.00 0.00 3.51
6726 7194 2.572104 GTCCCTTGTCTCCTGTTACCAT 59.428 50.000 0.00 0.00 0.00 3.55
6727 7195 1.975680 GTCCCTTGTCTCCTGTTACCA 59.024 52.381 0.00 0.00 0.00 3.25
6728 7196 1.975680 TGTCCCTTGTCTCCTGTTACC 59.024 52.381 0.00 0.00 0.00 2.85
6729 7197 2.609737 CGTGTCCCTTGTCTCCTGTTAC 60.610 54.545 0.00 0.00 0.00 2.50
6730 7198 1.616865 CGTGTCCCTTGTCTCCTGTTA 59.383 52.381 0.00 0.00 0.00 2.41
6731 7199 0.393077 CGTGTCCCTTGTCTCCTGTT 59.607 55.000 0.00 0.00 0.00 3.16
6732 7200 0.469331 TCGTGTCCCTTGTCTCCTGT 60.469 55.000 0.00 0.00 0.00 4.00
6733 7201 0.898320 ATCGTGTCCCTTGTCTCCTG 59.102 55.000 0.00 0.00 0.00 3.86
6734 7202 0.898320 CATCGTGTCCCTTGTCTCCT 59.102 55.000 0.00 0.00 0.00 3.69
6735 7203 0.608640 ACATCGTGTCCCTTGTCTCC 59.391 55.000 0.00 0.00 0.00 3.71
6736 7204 2.457366 AACATCGTGTCCCTTGTCTC 57.543 50.000 0.00 0.00 0.00 3.36
6737 7205 2.930826 AAACATCGTGTCCCTTGTCT 57.069 45.000 0.00 0.00 0.00 3.41
6738 7206 3.982576 AAAAACATCGTGTCCCTTGTC 57.017 42.857 0.00 0.00 0.00 3.18
6739 7207 4.457949 GGATAAAAACATCGTGTCCCTTGT 59.542 41.667 0.00 0.00 0.00 3.16
6740 7208 4.457603 TGGATAAAAACATCGTGTCCCTTG 59.542 41.667 0.00 0.00 0.00 3.61
6741 7209 4.658063 TGGATAAAAACATCGTGTCCCTT 58.342 39.130 0.00 0.00 0.00 3.95
6742 7210 4.261801 CTGGATAAAAACATCGTGTCCCT 58.738 43.478 0.00 0.00 0.00 4.20
6743 7211 3.377172 CCTGGATAAAAACATCGTGTCCC 59.623 47.826 0.00 0.00 0.00 4.46
6744 7212 4.007659 ACCTGGATAAAAACATCGTGTCC 58.992 43.478 0.00 0.00 0.00 4.02
6745 7213 5.622770 AACCTGGATAAAAACATCGTGTC 57.377 39.130 0.00 0.00 0.00 3.67
6746 7214 4.153475 CGAACCTGGATAAAAACATCGTGT 59.847 41.667 0.00 0.00 0.00 4.49
6747 7215 4.436852 CCGAACCTGGATAAAAACATCGTG 60.437 45.833 0.00 0.00 0.00 4.35
6748 7216 3.687698 CCGAACCTGGATAAAAACATCGT 59.312 43.478 0.00 0.00 0.00 3.73
6749 7217 3.064820 CCCGAACCTGGATAAAAACATCG 59.935 47.826 0.00 0.00 0.00 3.84
6750 7218 3.181490 GCCCGAACCTGGATAAAAACATC 60.181 47.826 0.00 0.00 0.00 3.06
6751 7219 2.758423 GCCCGAACCTGGATAAAAACAT 59.242 45.455 0.00 0.00 0.00 2.71
6752 7220 2.164338 GCCCGAACCTGGATAAAAACA 58.836 47.619 0.00 0.00 0.00 2.83
6753 7221 1.475280 GGCCCGAACCTGGATAAAAAC 59.525 52.381 0.00 0.00 0.00 2.43
6754 7222 1.617533 GGGCCCGAACCTGGATAAAAA 60.618 52.381 5.69 0.00 0.00 1.94
6755 7223 0.033894 GGGCCCGAACCTGGATAAAA 60.034 55.000 5.69 0.00 0.00 1.52
6756 7224 0.917333 AGGGCCCGAACCTGGATAAA 60.917 55.000 18.44 0.00 36.85 1.40
6757 7225 1.307517 AGGGCCCGAACCTGGATAA 60.308 57.895 18.44 0.00 36.85 1.75
6758 7226 1.764854 GAGGGCCCGAACCTGGATA 60.765 63.158 18.44 0.00 38.79 2.59
6759 7227 3.090532 GAGGGCCCGAACCTGGAT 61.091 66.667 18.44 0.00 38.79 3.41
6760 7228 4.332543 AGAGGGCCCGAACCTGGA 62.333 66.667 18.44 0.00 38.79 3.86
6761 7229 3.787001 GAGAGGGCCCGAACCTGG 61.787 72.222 18.44 0.00 38.79 4.45
6762 7230 4.148825 CGAGAGGGCCCGAACCTG 62.149 72.222 18.44 1.23 38.79 4.00
6763 7231 3.680920 ATCGAGAGGGCCCGAACCT 62.681 63.158 18.44 12.55 42.18 3.50
6764 7232 3.155167 ATCGAGAGGGCCCGAACC 61.155 66.667 18.44 7.31 38.36 3.62
6765 7233 2.107141 CATCGAGAGGGCCCGAAC 59.893 66.667 18.44 12.45 38.36 3.95
6766 7234 3.154473 CCATCGAGAGGGCCCGAA 61.154 66.667 18.44 1.01 38.36 4.30
6767 7235 4.137615 TCCATCGAGAGGGCCCGA 62.138 66.667 18.44 10.63 39.25 5.14
6768 7236 3.610669 CTCCATCGAGAGGGCCCG 61.611 72.222 18.44 4.06 38.52 6.13
6774 7242 2.766828 AGGGTTTTACCTCCATCGAGAG 59.233 50.000 0.00 0.00 38.52 3.20
6775 7243 2.829023 AGGGTTTTACCTCCATCGAGA 58.171 47.619 0.00 0.00 38.52 4.04
6776 7244 3.705072 AGTAGGGTTTTACCTCCATCGAG 59.295 47.826 0.00 0.00 42.09 4.04
6777 7245 3.703052 GAGTAGGGTTTTACCTCCATCGA 59.297 47.826 0.00 0.00 42.09 3.59
6778 7246 3.181468 GGAGTAGGGTTTTACCTCCATCG 60.181 52.174 0.00 0.00 42.09 3.84
6779 7247 4.038633 AGGAGTAGGGTTTTACCTCCATC 58.961 47.826 6.76 0.00 42.09 3.51
6780 7248 3.780850 CAGGAGTAGGGTTTTACCTCCAT 59.219 47.826 6.76 0.00 42.09 3.41
6781 7249 3.178865 CAGGAGTAGGGTTTTACCTCCA 58.821 50.000 6.76 0.00 42.09 3.86
6782 7250 2.093075 GCAGGAGTAGGGTTTTACCTCC 60.093 54.545 0.00 0.00 42.09 4.30
6783 7251 2.838813 AGCAGGAGTAGGGTTTTACCTC 59.161 50.000 0.00 0.00 42.09 3.85
6784 7252 2.917205 AGCAGGAGTAGGGTTTTACCT 58.083 47.619 0.00 0.00 44.75 3.08
6785 7253 3.008704 TCAAGCAGGAGTAGGGTTTTACC 59.991 47.826 0.00 0.00 37.60 2.85
6786 7254 4.281898 TCAAGCAGGAGTAGGGTTTTAC 57.718 45.455 0.00 0.00 0.00 2.01
6787 7255 5.514500 AATCAAGCAGGAGTAGGGTTTTA 57.486 39.130 0.00 0.00 0.00 1.52
6788 7256 4.388577 AATCAAGCAGGAGTAGGGTTTT 57.611 40.909 0.00 0.00 0.00 2.43
6789 7257 5.514500 TTAATCAAGCAGGAGTAGGGTTT 57.486 39.130 0.00 0.00 0.00 3.27
6790 7258 5.717119 ATTAATCAAGCAGGAGTAGGGTT 57.283 39.130 0.00 0.00 0.00 4.11
6791 7259 7.072454 TCAATATTAATCAAGCAGGAGTAGGGT 59.928 37.037 0.00 0.00 0.00 4.34
6792 7260 7.453393 TCAATATTAATCAAGCAGGAGTAGGG 58.547 38.462 0.00 0.00 0.00 3.53
6793 7261 8.944029 CATCAATATTAATCAAGCAGGAGTAGG 58.056 37.037 0.00 0.00 0.00 3.18
6794 7262 9.716531 TCATCAATATTAATCAAGCAGGAGTAG 57.283 33.333 0.00 0.00 0.00 2.57
6801 7269 9.758021 ACCCATATCATCAATATTAATCAAGCA 57.242 29.630 0.00 0.00 0.00 3.91
6812 7280 9.601810 ACTCTTGTACTACCCATATCATCAATA 57.398 33.333 0.00 0.00 0.00 1.90
6813 7281 8.497910 ACTCTTGTACTACCCATATCATCAAT 57.502 34.615 0.00 0.00 0.00 2.57
6814 7282 7.914427 ACTCTTGTACTACCCATATCATCAA 57.086 36.000 0.00 0.00 0.00 2.57
6815 7283 8.445588 TCTACTCTTGTACTACCCATATCATCA 58.554 37.037 0.00 0.00 0.00 3.07
6816 7284 8.865420 TCTACTCTTGTACTACCCATATCATC 57.135 38.462 0.00 0.00 0.00 2.92
6817 7285 9.469097 GATCTACTCTTGTACTACCCATATCAT 57.531 37.037 0.00 0.00 0.00 2.45
6818 7286 8.670490 AGATCTACTCTTGTACTACCCATATCA 58.330 37.037 0.00 0.00 0.00 2.15
6820 7288 9.962809 GTAGATCTACTCTTGTACTACCCATAT 57.037 37.037 23.12 0.00 35.28 1.78
6821 7289 8.381636 GGTAGATCTACTCTTGTACTACCCATA 58.618 40.741 27.68 0.00 38.57 2.74
6822 7290 7.147177 TGGTAGATCTACTCTTGTACTACCCAT 60.147 40.741 27.68 0.00 40.97 4.00
6823 7291 6.159222 TGGTAGATCTACTCTTGTACTACCCA 59.841 42.308 27.68 12.88 40.97 4.51
6824 7292 6.486320 GTGGTAGATCTACTCTTGTACTACCC 59.514 46.154 27.68 10.66 40.97 3.69
6825 7293 6.202570 CGTGGTAGATCTACTCTTGTACTACC 59.797 46.154 27.68 13.13 41.46 3.18
6826 7294 6.983307 TCGTGGTAGATCTACTCTTGTACTAC 59.017 42.308 27.68 12.31 36.36 2.73
6827 7295 7.069208 TCTCGTGGTAGATCTACTCTTGTACTA 59.931 40.741 27.68 11.50 36.36 1.82
6828 7296 5.987098 TCGTGGTAGATCTACTCTTGTACT 58.013 41.667 27.68 0.00 36.36 2.73
6829 7297 6.047870 TCTCGTGGTAGATCTACTCTTGTAC 58.952 44.000 27.68 16.82 36.36 2.90
6830 7298 6.231258 TCTCGTGGTAGATCTACTCTTGTA 57.769 41.667 27.68 10.89 36.36 2.41
6831 7299 5.100344 TCTCGTGGTAGATCTACTCTTGT 57.900 43.478 27.68 0.00 36.36 3.16
6832 7300 6.236017 GATCTCGTGGTAGATCTACTCTTG 57.764 45.833 27.68 16.93 45.64 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.