AutoCloner

Multiple sequence alignment - TraesCS6A01G156700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G156700	chr6A	100.000	2363	0	0	1	2363	145740188	145737826	0.000000e+00	4364
1	TraesCS6A01G156700	chr4B	86.325	1543	149	31	2	1487	412262629	412264166	0.000000e+00	1624
2	TraesCS6A01G156700	chr3B	90.665	1007	87	3	2	1007	670119017	670118017	0.000000e+00	1332
3	TraesCS6A01G156700	chr3B	89.316	468	32	6	1	450	780672277	780672744	2.630000e-159	571
4	TraesCS6A01G156700	chr3B	86.116	533	58	10	1	526	603629067	603628544	5.700000e-156	560
5	TraesCS6A01G156700	chr3B	86.721	369	31	8	447	802	780672785	780673148	6.120000e-106	394
6	TraesCS6A01G156700	chr3B	79.863	437	49	20	1081	1490	670118020	670117596	1.380000e-72	283
7	TraesCS6A01G156700	chr2A	89.522	878	74	11	1497	2363	312822785	312823655	0.000000e+00	1096
8	TraesCS6A01G156700	chr2A	89.376	866	77	14	1499	2363	447351876	447351025	0.000000e+00	1075
9	TraesCS6A01G156700	chr7A	89.603	856	57	7	1	824	49049716	49048861	0.000000e+00	1059
10	TraesCS6A01G156700	chr7A	87.442	868	82	18	1497	2363	281049052	281049893	0.000000e+00	974
11	TraesCS6A01G156700	chr5B	84.485	883	106	23	1497	2363	303845852	303846719	0.000000e+00	843
12	TraesCS6A01G156700	chr5B	87.616	541	48	6	1	526	148499329	148499865	5.580000e-171	610
13	TraesCS6A01G156700	chr5B	87.616	541	47	7	2	526	255676303	255676839	5.580000e-171	610
14	TraesCS6A01G156700	chr1B	83.653	887	106	35	1497	2363	251121874	251121007	0.000000e+00	798
15	TraesCS6A01G156700	chr1B	88.235	476	30	11	1	450	16781510	16781035	1.600000e-151	545
16	TraesCS6A01G156700	chr1B	86.921	367	33	6	447	802	16780994	16780632	4.730000e-107	398
17	TraesCS6A01G156700	chr1D	83.295	874	127	18	1497	2363	1002201	1001340	0.000000e+00	787
18	TraesCS6A01G156700	chr7D	83.428	881	105	33	1497	2363	318627785	318626932	0.000000e+00	780
19	TraesCS6A01G156700	chr7D	79.208	404	64	13	421	806	46841025	46840624	1.800000e-66	263
20	TraesCS6A01G156700	chr7D	81.579	304	29	10	1	289	46841408	46841117	2.360000e-55	226
21	TraesCS6A01G156700	chr4D	82.962	898	103	18	637	1487	269593516	269592622	0.000000e+00	765
22	TraesCS6A01G156700	chr1A	82.638	887	123	28	1497	2362	146423892	146423016	0.000000e+00	756
23	TraesCS6A01G156700	chr2B	82.763	876	120	25	1497	2363	279452894	279453747	0.000000e+00	752
24	TraesCS6A01G156700	chr2B	87.246	541	49	7	2	526	132285854	132285318	1.210000e-167	599
25	TraesCS6A01G156700	chr7B	88.007	542	44	4	2	526	590955541	590955004	2.580000e-174	621
26	TraesCS6A01G156700	chr7B	90.171	468	28	7	1	450	408955212	408955679	5.620000e-166	593
27	TraesCS6A01G156700	chr7B	86.486	370	32	6	447	802	408955720	408956085	7.920000e-105	390
28	TraesCS6A01G156700	chr3D	87.269	542	47	5	2	526	141390956	141390420	1.210000e-167	599
29	TraesCS6A01G156700	chr6B	86.004	543	54	8	1	526	123183420	123183957	1.590000e-156	562

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G156700	chr6A	145737826	145740188	2362	True	4364.0	4364	100.0000	1	2363	1	chr6A.!!$R1	2362
1	TraesCS6A01G156700	chr4B	412262629	412264166	1537	False	1624.0	1624	86.3250	2	1487	1	chr4B.!!$F1	1485
2	TraesCS6A01G156700	chr3B	670117596	670119017	1421	True	807.5	1332	85.2640	2	1490	2	chr3B.!!$R2	1488
3	TraesCS6A01G156700	chr3B	603628544	603629067	523	True	560.0	560	86.1160	1	526	1	chr3B.!!$R1	525
4	TraesCS6A01G156700	chr3B	780672277	780673148	871	False	482.5	571	88.0185	1	802	2	chr3B.!!$F1	801
5	TraesCS6A01G156700	chr2A	312822785	312823655	870	False	1096.0	1096	89.5220	1497	2363	1	chr2A.!!$F1	866
6	TraesCS6A01G156700	chr2A	447351025	447351876	851	True	1075.0	1075	89.3760	1499	2363	1	chr2A.!!$R1	864
7	TraesCS6A01G156700	chr7A	49048861	49049716	855	True	1059.0	1059	89.6030	1	824	1	chr7A.!!$R1	823
8	TraesCS6A01G156700	chr7A	281049052	281049893	841	False	974.0	974	87.4420	1497	2363	1	chr7A.!!$F1	866
9	TraesCS6A01G156700	chr5B	303845852	303846719	867	False	843.0	843	84.4850	1497	2363	1	chr5B.!!$F3	866
10	TraesCS6A01G156700	chr5B	148499329	148499865	536	False	610.0	610	87.6160	1	526	1	chr5B.!!$F1	525
11	TraesCS6A01G156700	chr5B	255676303	255676839	536	False	610.0	610	87.6160	2	526	1	chr5B.!!$F2	524
12	TraesCS6A01G156700	chr1B	251121007	251121874	867	True	798.0	798	83.6530	1497	2363	1	chr1B.!!$R1	866
13	TraesCS6A01G156700	chr1B	16780632	16781510	878	True	471.5	545	87.5780	1	802	2	chr1B.!!$R2	801
14	TraesCS6A01G156700	chr1D	1001340	1002201	861	True	787.0	787	83.2950	1497	2363	1	chr1D.!!$R1	866
15	TraesCS6A01G156700	chr7D	318626932	318627785	853	True	780.0	780	83.4280	1497	2363	1	chr7D.!!$R1	866
16	TraesCS6A01G156700	chr7D	46840624	46841408	784	True	244.5	263	80.3935	1	806	2	chr7D.!!$R2	805
17	TraesCS6A01G156700	chr4D	269592622	269593516	894	True	765.0	765	82.9620	637	1487	1	chr4D.!!$R1	850
18	TraesCS6A01G156700	chr1A	146423016	146423892	876	True	756.0	756	82.6380	1497	2362	1	chr1A.!!$R1	865
19	TraesCS6A01G156700	chr2B	279452894	279453747	853	False	752.0	752	82.7630	1497	2363	1	chr2B.!!$F1	866
20	TraesCS6A01G156700	chr2B	132285318	132285854	536	True	599.0	599	87.2460	2	526	1	chr2B.!!$R1	524
21	TraesCS6A01G156700	chr7B	590955004	590955541	537	True	621.0	621	88.0070	2	526	1	chr7B.!!$R1	524
22	TraesCS6A01G156700	chr7B	408955212	408956085	873	False	491.5	593	88.3285	1	802	2	chr7B.!!$F1	801
23	TraesCS6A01G156700	chr3D	141390420	141390956	536	True	599.0	599	87.2690	2	526	1	chr3D.!!$R1	524
24	TraesCS6A01G156700	chr6B	123183420	123183957	537	False	562.0	562	86.0040	1	526	1	chr6B.!!$F1	525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
787	963	0.390998	GCCGAAAGAGAAGCTCAGCT	60.391	55.0	0.0	0.0	42.56	4.24	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1653	1888	2.997315	CGAGGTGTCCTGGCTGGA	60.997	66.667	9.3	9.3	43.86	3.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	6.283694	TGTATTATTGCACCAGTCATCTCTC	58.716	40.000	0.00	0.00	0.00	3.20
41	42	0.865218	CTCTCTCATCGCAGCGTGAC	60.865	60.000	15.93	0.00	0.00	3.67
172	195	1.520174	CTCAATCACATCAGTAGCGCG	59.480	52.381	0.00	0.00	0.00	6.86
236	293	6.405731	GCTTCCGAGATATCTCTAATCTGCAT	60.406	42.308	26.29	0.00	40.75	3.96
450	556	4.588106	ACATGTTCACCCAAATGAATGTGA	59.412	37.500	0.00	0.00	40.60	3.58
487	637	2.910199	TGGCTCAACAGAGTGATATGC	58.090	47.619	0.00	0.00	0.00	3.14
510	660	6.376299	TGCAGCTTCAAATTGAGAGTATGAAT	59.624	34.615	0.00	0.00	30.39	2.57
518	668	8.514594	TCAAATTGAGAGTATGAATGTCAAACC	58.485	33.333	0.00	0.00	31.24	3.27
563	724	3.535561	CTGTTGTCTGTTGACTCCACTT	58.464	45.455	0.00	0.00	43.29	3.16
578	743	9.490379	TTGACTCCACTTAGAAAGTAAGATTTC	57.510	33.333	0.00	0.00	40.46	2.17
787	963	0.390998	GCCGAAAGAGAAGCTCAGCT	60.391	55.000	0.00	0.00	42.56	4.24
848	1024	1.271379	CCATTGTGAGGGTCGAGGTTT	60.271	52.381	0.00	0.00	0.00	3.27
849	1025	2.504367	CATTGTGAGGGTCGAGGTTTT	58.496	47.619	0.00	0.00	0.00	2.43
866	1042	3.435671	GGTTTTGTAGGAGAATGACACCG	59.564	47.826	0.00	0.00	34.46	4.94
867	1043	3.328382	TTTGTAGGAGAATGACACCGG	57.672	47.619	0.00	0.00	34.46	5.28
874	1050	0.613777	AGAATGACACCGGGGAAGAC	59.386	55.000	12.96	0.00	0.00	3.01
900	1076	2.232298	GAGCGGAGGTGTGGAGGAAG	62.232	65.000	0.00	0.00	39.88	3.46
907	1083	1.536943	GGTGTGGAGGAAGACGAGCT	61.537	60.000	0.00	0.00	0.00	4.09
914	1090	1.446966	GGAAGACGAGCTGGAGTGC	60.447	63.158	1.44	0.00	0.00	4.40
931	1107	1.248785	TGCCCGCTAGAGTTCGAAGT	61.249	55.000	4.86	4.86	0.00	3.01
936	1112	0.862283	GCTAGAGTTCGAAGTCGCCG	60.862	60.000	23.66	17.25	39.60	6.46
943	1119	2.191354	TTCGAAGTCGCCGTCGTCAT	62.191	55.000	1.20	0.00	42.22	3.06
988	1164	2.803155	GAACCAGTGATCCGGCTGCA	62.803	60.000	0.50	0.00	0.00	4.41
990	1166	3.200593	CAGTGATCCGGCTGCAGC	61.201	66.667	30.88	30.88	41.14	5.25
991	1167	3.397439	AGTGATCCGGCTGCAGCT	61.397	61.111	35.82	18.48	41.70	4.24
992	1168	2.060383	AGTGATCCGGCTGCAGCTA	61.060	57.895	35.82	22.54	41.70	3.32
1022	1198	4.567385	CGCGCTGCCTCCTCTCTC	62.567	72.222	5.56	0.00	0.00	3.20
1024	1200	2.757508	CGCTGCCTCCTCTCTCCA	60.758	66.667	0.00	0.00	0.00	3.86
1025	1201	2.132996	CGCTGCCTCCTCTCTCCAT	61.133	63.158	0.00	0.00	0.00	3.41
1038	1214	1.069823	CTCTCCATATGCCTGCGTCTT	59.930	52.381	0.00	0.00	0.00	3.01
1039	1215	1.202568	TCTCCATATGCCTGCGTCTTG	60.203	52.381	0.00	0.00	0.00	3.02
1061	1237	3.848347	CTCGGATCGCCATGGTCGG	62.848	68.421	22.59	13.36	0.00	4.79
1117	1293	2.670148	GGTCGAGCTGGAACCCCAT	61.670	63.158	7.51	0.00	42.59	4.00
1131	1307	2.043652	CCATGGGCTTGGTCTGGG	60.044	66.667	2.85	0.00	31.74	4.45
1134	1310	1.542375	ATGGGCTTGGTCTGGGTCT	60.542	57.895	0.00	0.00	0.00	3.85
1181	1358	2.111384	CCTTCTCGATCTGGGGAAGAA	58.889	52.381	10.79	1.30	38.79	2.52
1193	1370	1.272536	GGGGAAGAAAAGGGAAGGGAC	60.273	57.143	0.00	0.00	0.00	4.46
1215	1392	0.263172	GAGAGGAGGGGAGATCACCA	59.737	60.000	11.56	0.00	43.57	4.17
1227	1404	1.564818	AGATCACCAGTACGGAGAGGA	59.435	52.381	10.17	3.77	37.84	3.71
1233	1410	1.323412	CAGTACGGAGAGGATGGAGG	58.677	60.000	0.00	0.00	0.00	4.30
1355	1553	1.959226	GACACAAAGGAGCGCGGAA	60.959	57.895	8.83	0.00	0.00	4.30
1400	1622	9.642343	AAGTTTCTTAGATCCACTTAAAAAGGT	57.358	29.630	0.00	0.00	0.00	3.50
1401	1623	9.642343	AGTTTCTTAGATCCACTTAAAAAGGTT	57.358	29.630	0.00	0.00	0.00	3.50
1439	1662	9.699703	TTACCAAAAAGTATAAGGATGTTTTGC	57.300	29.630	0.00	0.00	35.59	3.68
1466	1690	2.504244	GCGACGGACGACCAGAAG	60.504	66.667	4.48	0.00	45.77	2.85
1468	1692	2.504244	GACGGACGACCAGAAGCG	60.504	66.667	4.48	0.00	35.59	4.68
1474	1698	2.956964	CGACCAGAAGCGATCGGC	60.957	66.667	18.30	9.32	44.05	5.54
1491	1715	6.637365	CGATCGGCGCTTTATTATTATTAGG	58.363	40.000	7.64	0.00	0.00	2.69
1492	1716	6.292168	CGATCGGCGCTTTATTATTATTAGGG	60.292	42.308	7.64	0.00	0.00	3.53
1493	1717	5.180271	TCGGCGCTTTATTATTATTAGGGG	58.820	41.667	7.64	0.00	0.00	4.79
1494	1718	4.939439	CGGCGCTTTATTATTATTAGGGGT	59.061	41.667	7.64	0.00	0.00	4.95
1495	1719	6.070881	TCGGCGCTTTATTATTATTAGGGGTA	60.071	38.462	7.64	0.00	0.00	3.69
1541	1765	5.010933	TCACCTTGTCCGGCATATTTTTAA	58.989	37.500	0.00	0.00	0.00	1.52
1572	1797	7.201574	CGGGGAAAATTTATTTCGGGATTTTTC	60.202	37.037	0.00	0.00	33.29	2.29
1623	1853	1.144969	TCTGCACGTCGGATTGTTTC	58.855	50.000	0.00	0.00	0.00	2.78
1653	1888	0.396139	TAACCGACTCTGGGCCGTAT	60.396	55.000	0.00	0.00	0.00	3.06
1656	1891	2.125326	CGACTCTGGGCCGTATCCA	61.125	63.158	0.00	0.00	0.00	3.41
1749	2000	2.669240	GCAAACCCTAGCCCGAGT	59.331	61.111	0.00	0.00	0.00	4.18
1876	2177	4.446385	GCCGCCGATTTTTCTTTTAAAACT	59.554	37.500	0.00	0.00	30.45	2.66
1883	2186	8.257166	CCGATTTTTCTTTTAAAACTGTTCGTC	58.743	33.333	0.00	0.00	30.08	4.20
2166	2480	1.630148	CGCCTAGAGTTTTGTCTCGG	58.370	55.000	0.00	0.00	39.21	4.63
2180	2494	0.972983	TCTCGGAGCCCTCTTTCTGG	60.973	60.000	0.00	0.00	0.00	3.86
2195	2509	8.856103	CCCTCTTTCTGGTTAATCAACTTAAAA	58.144	33.333	0.00	0.00	34.88	1.52
2333	2647	7.971004	GTTCTTAAGTTGAACTTTCTGGTTG	57.029	36.000	16.49	0.19	39.51	3.77
2344	2658	6.710744	TGAACTTTCTGGTTGGATCTTCTTAC	59.289	38.462	0.00	0.00	0.00	2.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
13	14	1.680735	GCGATGAGAGAGATGACTGGT	59.319	52.381	0.00	0.00	0.00	4.00
26	27	2.125952	TGGTCACGCTGCGATGAG	60.126	61.111	30.47	14.75	0.00	2.90
102	111	3.305950	GCATGGTAAGAGATCTCGCTGAT	60.306	47.826	16.97	4.55	38.27	2.90
103	112	2.035193	GCATGGTAAGAGATCTCGCTGA	59.965	50.000	16.97	2.35	34.09	4.26
434	496	8.774890	TCATAAATTTCACATTCATTTGGGTG	57.225	30.769	0.00	0.00	0.00	4.61
478	628	5.884232	TCTCAATTTGAAGCTGCATATCACT	59.116	36.000	0.00	0.00	0.00	3.41
479	629	6.127810	TCTCAATTTGAAGCTGCATATCAC	57.872	37.500	0.00	0.00	0.00	3.06
487	637	7.759465	ACATTCATACTCTCAATTTGAAGCTG	58.241	34.615	0.01	3.99	30.56	4.24
518	668	1.322936	GAAGCTTCTGAAGATGTCGCG	59.677	52.381	21.06	0.00	0.00	5.87
578	743	9.706691	TTACTGAACACTCCAGATAGTTAAAAG	57.293	33.333	0.00	0.00	35.69	2.27
630	803	7.504924	TGGGTAACTAACAACAAGATTTCAG	57.495	36.000	0.00	0.00	0.00	3.02
707	880	7.290110	TCACTTCACTATTTCTTCTGTCAGA	57.710	36.000	0.00	0.00	0.00	3.27
722	898	3.788227	TGCCTTACCAATCACTTCACT	57.212	42.857	0.00	0.00	0.00	3.41
729	905	5.083122	TCTTTCCATTTGCCTTACCAATCA	58.917	37.500	0.00	0.00	0.00	2.57
817	993	0.034186	TCACAATGGCCCCTCATCAC	60.034	55.000	0.00	0.00	0.00	3.06
848	1024	1.553248	CCCGGTGTCATTCTCCTACAA	59.447	52.381	0.00	0.00	0.00	2.41
849	1025	1.191535	CCCGGTGTCATTCTCCTACA	58.808	55.000	0.00	0.00	0.00	2.74
866	1042	3.787001	CTCCTGCCCGTCTTCCCC	61.787	72.222	0.00	0.00	0.00	4.81
867	1043	4.475135	GCTCCTGCCCGTCTTCCC	62.475	72.222	0.00	0.00	0.00	3.97
876	1052	4.767255	CACACCTCCGCTCCTGCC	62.767	72.222	0.00	0.00	35.36	4.85
907	1083	1.605058	GAACTCTAGCGGGCACTCCA	61.605	60.000	0.00	0.00	34.36	3.86
914	1090	0.248134	CGACTTCGAACTCTAGCGGG	60.248	60.000	0.00	0.00	43.02	6.13
931	1107	1.074319	GTTGCTAATGACGACGGCGA	61.074	55.000	22.49	0.00	41.64	5.54
936	1112	1.321743	CTCGCAGTTGCTAATGACGAC	59.678	52.381	9.83	0.00	39.32	4.34
943	1119	2.592194	CGAGTTACTCGCAGTTGCTAA	58.408	47.619	21.80	0.00	46.75	3.09
959	1135	1.046472	TCACTGGTTCCACCACGAGT	61.046	55.000	0.00	0.00	44.79	4.18
971	1147	3.320879	CTGCAGCCGGATCACTGGT	62.321	63.158	5.05	0.00	43.99	4.00
988	1164	2.190578	GGCCATGGCGTTCTAGCT	59.809	61.111	29.90	0.00	43.06	3.32
1008	1184	1.275856	CATATGGAGAGAGGAGGCAGC	59.724	57.143	0.00	0.00	0.00	5.25
1022	1198	2.324215	CCAAGACGCAGGCATATGG	58.676	57.895	4.56	0.00	0.00	2.74
1047	1223	2.788191	GATCCCCGACCATGGCGATC	62.788	65.000	24.22	16.79	0.00	3.69
1049	1225	3.546543	GATCCCCGACCATGGCGA	61.547	66.667	24.22	9.66	0.00	5.54
1117	1293	0.909610	CTAGACCCAGACCAAGCCCA	60.910	60.000	0.00	0.00	0.00	5.36
1131	1307	4.208686	CTCCCGCCGTGGCTAGAC	62.209	72.222	9.55	0.00	39.32	2.59
1181	1358	1.662686	CTCTCCTGTCCCTTCCCTTT	58.337	55.000	0.00	0.00	0.00	3.11
1193	1370	0.560193	TGATCTCCCCTCCTCTCCTG	59.440	60.000	0.00	0.00	0.00	3.86
1215	1392	0.468400	GCCTCCATCCTCTCCGTACT	60.468	60.000	0.00	0.00	0.00	2.73
1318	1516	3.384555	TATCCCTCGACCCCGGCTT	62.385	63.158	0.00	0.00	36.24	4.35
1334	1532	0.460284	CCGCGCTCCTTTGTGTCTAT	60.460	55.000	5.56	0.00	0.00	1.98
1382	1604	6.110707	CCGCTAACCTTTTTAAGTGGATCTA	58.889	40.000	0.00	0.00	41.23	1.98
1392	1614	6.072008	GGTAATTGAACCCGCTAACCTTTTTA	60.072	38.462	0.00	0.00	33.02	1.52
1400	1622	5.302313	ACTTTTTGGTAATTGAACCCGCTAA	59.698	36.000	0.00	0.00	38.90	3.09
1401	1623	4.828387	ACTTTTTGGTAATTGAACCCGCTA	59.172	37.500	0.00	0.00	38.90	4.26
1402	1624	3.639561	ACTTTTTGGTAATTGAACCCGCT	59.360	39.130	0.00	0.00	38.90	5.52
1468	1692	6.018180	CCCCTAATAATAATAAAGCGCCGATC	60.018	42.308	2.29	0.00	0.00	3.69
1490	1714	3.887916	TTTGGGCCTATAATGTACCCC	57.112	47.619	4.53	0.00	40.04	4.95
1491	1715	7.453439	ACATTTATTTGGGCCTATAATGTACCC	59.547	37.037	16.10	0.00	41.24	3.69
1492	1716	8.417273	ACATTTATTTGGGCCTATAATGTACC	57.583	34.615	16.10	0.00	0.00	3.34
1493	1717	9.908152	GAACATTTATTTGGGCCTATAATGTAC	57.092	33.333	17.17	0.00	0.00	2.90
1494	1718	9.647918	TGAACATTTATTTGGGCCTATAATGTA	57.352	29.630	17.17	6.71	0.00	2.29
1495	1719	8.421002	GTGAACATTTATTTGGGCCTATAATGT	58.579	33.333	4.53	10.76	0.00	2.71
1541	1765	4.158949	CCGAAATAAATTTTCCCCGTCCTT	59.841	41.667	0.00	0.00	0.00	3.36
1653	1888	2.997315	CGAGGTGTCCTGGCTGGA	60.997	66.667	9.30	9.30	43.86	3.86
2166	2480	4.222124	TGATTAACCAGAAAGAGGGCTC	57.778	45.455	0.00	0.00	0.00	4.70
2232	2546	6.723131	AAGAAACAAGCTCCGATTACTAAC	57.277	37.500	0.00	0.00	0.00	2.34
2333	2647	6.313164	CGGGTAAAACTCAAGTAAGAAGATCC	59.687	42.308	0.00	0.00	0.00	3.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.