Multiple sequence alignment - TraesCS6A01G155400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G155400 chr6A 100.000 3433 0 0 990 4422 144247196 144250628 0.000000e+00 6340.0
1 TraesCS6A01G155400 chr6A 100.000 776 0 0 1 776 144246207 144246982 0.000000e+00 1434.0
2 TraesCS6A01G155400 chr6A 93.775 498 30 1 1 498 595078954 595079450 0.000000e+00 747.0
3 TraesCS6A01G155400 chr6A 92.308 143 11 0 4279 4421 53104269 53104127 2.090000e-48 204.0
4 TraesCS6A01G155400 chr6A 86.111 72 10 0 3993 4064 20232894 20232823 1.320000e-10 78.7
5 TraesCS6A01G155400 chr6A 100.000 30 0 0 2814 2843 450464545 450464516 6.180000e-04 56.5
6 TraesCS6A01G155400 chr6B 96.235 2975 90 15 990 3952 205234401 205237365 0.000000e+00 4854.0
7 TraesCS6A01G155400 chr6B 92.952 227 11 3 552 776 205234054 205234277 4.270000e-85 326.0
8 TraesCS6A01G155400 chr6B 95.413 109 3 2 4062 4168 205237366 205237474 5.880000e-39 172.0
9 TraesCS6A01G155400 chr6B 91.525 59 5 0 4010 4068 281335196 281335138 1.020000e-11 82.4
10 TraesCS6A01G155400 chr6B 96.774 31 1 0 2813 2843 512874263 512874293 8.000000e-03 52.8
11 TraesCS6A01G155400 chr6D 97.257 2443 45 14 990 3423 115771799 115774228 0.000000e+00 4120.0
12 TraesCS6A01G155400 chr6D 91.740 799 55 7 3448 4243 115777696 115778486 0.000000e+00 1099.0
13 TraesCS6A01G155400 chr6D 94.070 489 28 1 1 489 131932861 131933348 0.000000e+00 741.0
14 TraesCS6A01G155400 chr6D 96.316 190 7 0 587 776 115771484 115771673 3.320000e-81 313.0
15 TraesCS6A01G155400 chr6D 95.420 131 6 0 4292 4422 464794069 464794199 4.480000e-50 209.0
16 TraesCS6A01G155400 chr6D 85.915 71 9 1 3998 4067 53566765 53566695 1.710000e-09 75.0
17 TraesCS6A01G155400 chr6D 100.000 28 0 0 2816 2843 313281233 313281206 8.000000e-03 52.8
18 TraesCS6A01G155400 chr5D 94.578 498 24 3 1 498 241110894 241110400 0.000000e+00 767.0
19 TraesCS6A01G155400 chr5D 94.070 489 28 1 1 489 370623153 370623640 0.000000e+00 741.0
20 TraesCS6A01G155400 chr5D 93.056 144 8 1 4279 4422 9913476 9913335 4.480000e-50 209.0
21 TraesCS6A01G155400 chr5D 88.119 101 12 0 1324 1424 284893667 284893767 2.160000e-23 121.0
22 TraesCS6A01G155400 chr7D 94.165 497 28 1 1 497 150755346 150754851 0.000000e+00 756.0
23 TraesCS6A01G155400 chr7D 78.201 289 46 12 1315 1593 583066179 583065898 7.610000e-38 169.0
24 TraesCS6A01G155400 chr7D 86.458 96 13 0 2450 2545 583064643 583064548 6.050000e-19 106.0
25 TraesCS6A01G155400 chr3D 93.763 497 27 4 1 497 571056310 571056802 0.000000e+00 743.0
26 TraesCS6A01G155400 chr3D 92.361 144 9 1 4279 4422 590876134 590875993 2.090000e-48 204.0
27 TraesCS6A01G155400 chr1B 94.070 489 28 1 1 489 538199129 538198642 0.000000e+00 741.0
28 TraesCS6A01G155400 chr1B 91.935 62 5 0 3993 4054 32981830 32981891 2.190000e-13 87.9
29 TraesCS6A01G155400 chr1D 93.561 497 31 1 1 497 461542162 461541667 0.000000e+00 739.0
30 TraesCS6A01G155400 chr1D 91.034 145 11 2 4279 4422 295935769 295935912 1.250000e-45 195.0
31 TraesCS6A01G155400 chr3A 93.561 497 26 4 1 497 37299457 37298967 0.000000e+00 736.0
32 TraesCS6A01G155400 chr3A 92.857 42 2 1 3952 3993 706776220 706776180 4.780000e-05 60.2
33 TraesCS6A01G155400 chr2A 96.296 135 5 0 4288 4422 727719333 727719467 5.760000e-54 222.0
34 TraesCS6A01G155400 chr2A 92.254 142 11 0 4278 4419 768621188 768621329 7.500000e-48 202.0
35 TraesCS6A01G155400 chr5A 91.667 144 12 0 4279 4422 536357301 536357158 2.700000e-47 200.0
36 TraesCS6A01G155400 chr5A 91.608 143 12 0 4280 4422 603619033 603618891 9.700000e-47 198.0
37 TraesCS6A01G155400 chr5A 87.129 101 13 0 1324 1424 376464418 376464518 1.010000e-21 115.0
38 TraesCS6A01G155400 chr7B 77.931 290 45 14 1315 1593 650613795 650613514 3.540000e-36 163.0
39 TraesCS6A01G155400 chr7A 77.320 291 45 16 1315 1593 674816467 674816186 7.660000e-33 152.0
40 TraesCS6A01G155400 chr7A 80.128 156 23 3 2450 2597 674814958 674814803 4.680000e-20 110.0
41 TraesCS6A01G155400 chr5B 88.119 101 12 0 1324 1424 322200171 322200271 2.160000e-23 121.0
42 TraesCS6A01G155400 chr5B 88.158 76 8 1 3993 4067 42166387 42166312 6.090000e-14 89.8
43 TraesCS6A01G155400 chr5B 88.000 75 7 2 3993 4066 239392438 239392365 2.190000e-13 87.9
44 TraesCS6A01G155400 chr2B 91.176 68 5 1 4002 4068 721297627 721297560 1.690000e-14 91.6
45 TraesCS6A01G155400 chr4B 87.692 65 7 1 4008 4071 537311204 537311140 1.710000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G155400 chr6A 144246207 144250628 4421 False 3887 6340 100.000000 1 4422 2 chr6A.!!$F2 4421
1 TraesCS6A01G155400 chr6B 205234054 205237474 3420 False 1784 4854 94.866667 552 4168 3 chr6B.!!$F2 3616
2 TraesCS6A01G155400 chr6D 115771484 115778486 7002 False 1844 4120 95.104333 587 4243 3 chr6D.!!$F3 3656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.034059 CCGCCGATCTAAAGCCAGAT 59.966 55.000 0.0 0.0 37.99 2.90 F
432 433 0.104725 AGGGGAGGAAGATGGGCTAG 60.105 60.000 0.0 0.0 0.00 3.42 F
510 511 0.462789 CGGGGGTATCTTGCGTAACT 59.537 55.000 0.0 0.0 0.00 2.24 F
1452 1467 0.537143 AAACCCTTCATGTGCTGCGA 60.537 50.000 0.0 0.0 0.00 5.10 F
2775 2796 1.423921 GTTGGGGAAGAAGAGGTCCAA 59.576 52.381 0.0 0.0 35.44 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 1616 0.459489 GGGTGCAACAACACACACAT 59.541 50.0 3.06 0.0 43.71 3.21 R
2259 2276 0.178903 AGGTGGTAAGGTGCTCAGGA 60.179 55.0 0.00 0.0 0.00 3.86 R
2260 2277 0.693049 AAGGTGGTAAGGTGCTCAGG 59.307 55.0 0.00 0.0 0.00 3.86 R
2941 2962 0.099968 CGCCGTCGAATCCTCTGTTA 59.900 55.0 0.00 0.0 38.10 2.41 R
4279 7751 0.030705 TCAGGAGGGAAGATGGGAGG 60.031 60.0 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 0.385751 TCGAGATCCGATCACCAAGC 59.614 55.000 11.01 0.00 43.23 4.01
36 37 0.387202 CGAGATCCGATCACCAAGCT 59.613 55.000 11.01 0.00 41.76 3.74
37 38 1.202463 CGAGATCCGATCACCAAGCTT 60.202 52.381 11.01 0.00 41.76 3.74
38 39 2.478831 GAGATCCGATCACCAAGCTTC 58.521 52.381 11.01 0.00 0.00 3.86
39 40 2.102252 GAGATCCGATCACCAAGCTTCT 59.898 50.000 11.01 0.00 0.00 2.85
40 41 2.158986 AGATCCGATCACCAAGCTTCTG 60.159 50.000 11.01 0.00 0.00 3.02
41 42 0.250234 TCCGATCACCAAGCTTCTGG 59.750 55.000 2.71 2.71 42.68 3.86
42 43 1.372087 CCGATCACCAAGCTTCTGGC 61.372 60.000 4.24 0.00 40.45 4.85
43 44 1.372087 CGATCACCAAGCTTCTGGCC 61.372 60.000 4.24 0.00 40.45 5.36
44 45 1.372087 GATCACCAAGCTTCTGGCCG 61.372 60.000 4.24 0.00 40.45 6.13
45 46 2.826777 ATCACCAAGCTTCTGGCCGG 62.827 60.000 4.71 4.71 40.45 6.13
62 63 3.680156 GCCACCGCCAATGAAGAA 58.320 55.556 0.00 0.00 0.00 2.52
63 64 1.508088 GCCACCGCCAATGAAGAAG 59.492 57.895 0.00 0.00 0.00 2.85
64 65 0.960364 GCCACCGCCAATGAAGAAGA 60.960 55.000 0.00 0.00 0.00 2.87
65 66 1.755179 CCACCGCCAATGAAGAAGAT 58.245 50.000 0.00 0.00 0.00 2.40
66 67 1.402968 CCACCGCCAATGAAGAAGATG 59.597 52.381 0.00 0.00 0.00 2.90
67 68 2.358957 CACCGCCAATGAAGAAGATGA 58.641 47.619 0.00 0.00 0.00 2.92
68 69 2.096496 CACCGCCAATGAAGAAGATGAC 59.904 50.000 0.00 0.00 0.00 3.06
69 70 1.672881 CCGCCAATGAAGAAGATGACC 59.327 52.381 0.00 0.00 0.00 4.02
70 71 2.358957 CGCCAATGAAGAAGATGACCA 58.641 47.619 0.00 0.00 0.00 4.02
71 72 2.096496 CGCCAATGAAGAAGATGACCAC 59.904 50.000 0.00 0.00 0.00 4.16
72 73 2.424956 GCCAATGAAGAAGATGACCACC 59.575 50.000 0.00 0.00 0.00 4.61
73 74 3.689347 CCAATGAAGAAGATGACCACCA 58.311 45.455 0.00 0.00 0.00 4.17
74 75 3.441572 CCAATGAAGAAGATGACCACCAC 59.558 47.826 0.00 0.00 0.00 4.16
75 76 2.859165 TGAAGAAGATGACCACCACC 57.141 50.000 0.00 0.00 0.00 4.61
76 77 2.054021 TGAAGAAGATGACCACCACCA 58.946 47.619 0.00 0.00 0.00 4.17
77 78 2.224523 TGAAGAAGATGACCACCACCAC 60.225 50.000 0.00 0.00 0.00 4.16
78 79 1.734655 AGAAGATGACCACCACCACT 58.265 50.000 0.00 0.00 0.00 4.00
79 80 1.349026 AGAAGATGACCACCACCACTG 59.651 52.381 0.00 0.00 0.00 3.66
80 81 0.401738 AAGATGACCACCACCACTGG 59.598 55.000 0.00 0.00 44.26 4.00
81 82 1.675641 GATGACCACCACCACTGGC 60.676 63.158 0.00 0.00 42.08 4.85
82 83 2.129555 GATGACCACCACCACTGGCT 62.130 60.000 0.00 0.00 42.08 4.75
83 84 0.840288 ATGACCACCACCACTGGCTA 60.840 55.000 0.00 0.00 42.08 3.93
84 85 1.003718 GACCACCACCACTGGCTAC 60.004 63.158 0.00 0.00 42.08 3.58
85 86 2.047274 CCACCACCACTGGCTACG 60.047 66.667 0.00 0.00 42.08 3.51
86 87 2.742372 CACCACCACTGGCTACGC 60.742 66.667 0.00 0.00 42.08 4.42
96 97 2.508663 GGCTACGCCGACCAGAAC 60.509 66.667 0.00 0.00 39.62 3.01
97 98 2.260434 GCTACGCCGACCAGAACA 59.740 61.111 0.00 0.00 0.00 3.18
98 99 1.805945 GCTACGCCGACCAGAACAG 60.806 63.158 0.00 0.00 0.00 3.16
99 100 1.880894 CTACGCCGACCAGAACAGA 59.119 57.895 0.00 0.00 0.00 3.41
100 101 0.456221 CTACGCCGACCAGAACAGAT 59.544 55.000 0.00 0.00 0.00 2.90
101 102 0.454600 TACGCCGACCAGAACAGATC 59.545 55.000 0.00 0.00 0.00 2.75
102 103 1.251527 ACGCCGACCAGAACAGATCT 61.252 55.000 0.00 0.00 39.68 2.75
111 112 1.293062 AGAACAGATCTGCCATGGGT 58.707 50.000 22.83 0.00 36.88 4.51
112 113 1.064906 AGAACAGATCTGCCATGGGTG 60.065 52.381 22.83 0.00 36.88 4.61
113 114 0.682209 AACAGATCTGCCATGGGTGC 60.682 55.000 22.83 0.00 0.00 5.01
114 115 1.826921 CAGATCTGCCATGGGTGCC 60.827 63.158 15.13 0.00 0.00 5.01
115 116 2.903855 GATCTGCCATGGGTGCCG 60.904 66.667 15.13 0.00 0.00 5.69
130 131 4.641645 CCGCCAAGCAGTCCACCA 62.642 66.667 0.00 0.00 0.00 4.17
131 132 3.052082 CGCCAAGCAGTCCACCAG 61.052 66.667 0.00 0.00 0.00 4.00
132 133 2.674380 GCCAAGCAGTCCACCAGG 60.674 66.667 0.00 0.00 0.00 4.45
133 134 2.674380 CCAAGCAGTCCACCAGGC 60.674 66.667 0.00 0.00 33.74 4.85
134 135 2.674380 CAAGCAGTCCACCAGGCC 60.674 66.667 0.00 0.00 33.74 5.19
135 136 3.971702 AAGCAGTCCACCAGGCCC 61.972 66.667 0.00 0.00 33.74 5.80
136 137 4.990910 AGCAGTCCACCAGGCCCT 62.991 66.667 0.00 0.00 33.74 5.19
137 138 4.416738 GCAGTCCACCAGGCCCTC 62.417 72.222 0.00 0.00 33.74 4.30
138 139 4.087892 CAGTCCACCAGGCCCTCG 62.088 72.222 0.00 0.00 33.74 4.63
139 140 4.316823 AGTCCACCAGGCCCTCGA 62.317 66.667 0.00 0.00 33.74 4.04
140 141 4.083862 GTCCACCAGGCCCTCGAC 62.084 72.222 0.00 0.00 33.74 4.20
143 144 4.436998 CACCAGGCCCTCGACGTC 62.437 72.222 5.18 5.18 0.00 4.34
155 156 3.945434 GACGTCGCCGCCGATCTA 61.945 66.667 0.00 0.00 46.38 1.98
156 157 3.459378 GACGTCGCCGCCGATCTAA 62.459 63.158 0.00 0.00 46.38 2.10
157 158 2.278336 CGTCGCCGCCGATCTAAA 60.278 61.111 0.00 0.00 46.38 1.85
158 159 2.293627 CGTCGCCGCCGATCTAAAG 61.294 63.158 0.00 0.00 46.38 1.85
159 160 2.279252 TCGCCGCCGATCTAAAGC 60.279 61.111 0.00 0.00 38.82 3.51
160 161 3.338676 CGCCGCCGATCTAAAGCC 61.339 66.667 0.00 0.00 36.29 4.35
161 162 2.203015 GCCGCCGATCTAAAGCCA 60.203 61.111 0.00 0.00 0.00 4.75
162 163 2.247437 GCCGCCGATCTAAAGCCAG 61.247 63.158 0.00 0.00 0.00 4.85
163 164 1.441729 CCGCCGATCTAAAGCCAGA 59.558 57.895 0.00 0.00 0.00 3.86
164 165 0.034059 CCGCCGATCTAAAGCCAGAT 59.966 55.000 0.00 0.00 37.99 2.90
165 166 1.143305 CGCCGATCTAAAGCCAGATG 58.857 55.000 0.00 0.00 35.37 2.90
166 167 1.269778 CGCCGATCTAAAGCCAGATGA 60.270 52.381 0.00 0.00 35.37 2.92
167 168 2.139118 GCCGATCTAAAGCCAGATGAC 58.861 52.381 0.00 0.00 35.37 3.06
168 169 2.483714 GCCGATCTAAAGCCAGATGACA 60.484 50.000 0.00 0.00 35.37 3.58
169 170 3.805108 GCCGATCTAAAGCCAGATGACAT 60.805 47.826 0.00 0.00 35.37 3.06
170 171 3.744942 CCGATCTAAAGCCAGATGACATG 59.255 47.826 0.00 0.00 35.37 3.21
171 172 3.186001 CGATCTAAAGCCAGATGACATGC 59.814 47.826 0.00 0.00 35.37 4.06
172 173 2.923121 TCTAAAGCCAGATGACATGCC 58.077 47.619 0.00 0.00 0.00 4.40
173 174 1.600957 CTAAAGCCAGATGACATGCCG 59.399 52.381 0.00 0.00 0.00 5.69
174 175 1.660560 AAAGCCAGATGACATGCCGC 61.661 55.000 0.00 0.00 0.00 6.53
175 176 3.589881 GCCAGATGACATGCCGCC 61.590 66.667 0.00 0.00 0.00 6.13
176 177 3.274586 CCAGATGACATGCCGCCG 61.275 66.667 0.00 0.00 0.00 6.46
177 178 2.202919 CAGATGACATGCCGCCGA 60.203 61.111 0.00 0.00 0.00 5.54
178 179 1.815003 CAGATGACATGCCGCCGAA 60.815 57.895 0.00 0.00 0.00 4.30
179 180 1.522355 AGATGACATGCCGCCGAAG 60.522 57.895 0.00 0.00 0.00 3.79
180 181 1.521457 GATGACATGCCGCCGAAGA 60.521 57.895 0.00 0.00 0.00 2.87
181 182 1.766143 GATGACATGCCGCCGAAGAC 61.766 60.000 0.00 0.00 0.00 3.01
182 183 3.195698 GACATGCCGCCGAAGACC 61.196 66.667 0.00 0.00 0.00 3.85
190 191 3.554692 GCCGAAGACCGCATCGTG 61.555 66.667 0.00 0.00 37.36 4.35
191 192 3.554692 CCGAAGACCGCATCGTGC 61.555 66.667 0.58 0.58 40.69 5.34
192 193 3.554692 CGAAGACCGCATCGTGCC 61.555 66.667 4.73 0.00 41.12 5.01
193 194 3.554692 GAAGACCGCATCGTGCCG 61.555 66.667 4.73 1.71 41.12 5.69
194 195 4.373116 AAGACCGCATCGTGCCGT 62.373 61.111 4.73 4.52 41.12 5.68
195 196 4.796231 AGACCGCATCGTGCCGTC 62.796 66.667 17.00 17.00 46.80 4.79
205 206 3.896133 GTGCCGTCGCCCGATCTA 61.896 66.667 0.00 0.00 39.56 1.98
206 207 3.592814 TGCCGTCGCCCGATCTAG 61.593 66.667 0.00 0.00 39.56 2.43
207 208 4.344474 GCCGTCGCCCGATCTAGG 62.344 72.222 0.00 0.00 39.56 3.02
213 214 4.321966 GCCCGATCTAGGCCAGCC 62.322 72.222 5.01 0.00 45.16 4.85
214 215 3.996124 CCCGATCTAGGCCAGCCG 61.996 72.222 5.01 7.54 41.95 5.52
215 216 4.671569 CCGATCTAGGCCAGCCGC 62.672 72.222 5.01 0.00 41.95 6.53
278 279 3.774702 GTCGAAGCCAACGCCGTC 61.775 66.667 0.00 0.00 34.57 4.79
285 286 2.126228 CCAACGCCGTCGCTTCTA 60.126 61.111 0.00 0.00 39.84 2.10
286 287 2.158959 CCAACGCCGTCGCTTCTAG 61.159 63.158 0.00 0.00 39.84 2.43
287 288 1.154093 CAACGCCGTCGCTTCTAGA 60.154 57.895 0.00 0.00 39.84 2.43
288 289 0.525668 CAACGCCGTCGCTTCTAGAT 60.526 55.000 0.00 0.00 39.84 1.98
289 290 0.248539 AACGCCGTCGCTTCTAGATC 60.249 55.000 0.00 0.00 39.84 2.75
290 291 1.722852 CGCCGTCGCTTCTAGATCG 60.723 63.158 8.19 8.19 0.00 3.69
291 292 1.647629 GCCGTCGCTTCTAGATCGA 59.352 57.895 11.96 11.96 0.00 3.59
292 293 0.657951 GCCGTCGCTTCTAGATCGAC 60.658 60.000 25.69 25.69 46.23 4.20
295 296 1.749153 GTCGCTTCTAGATCGACTGC 58.251 55.000 27.08 11.80 46.21 4.40
296 297 1.064208 GTCGCTTCTAGATCGACTGCA 59.936 52.381 27.08 5.45 46.21 4.41
297 298 1.064208 TCGCTTCTAGATCGACTGCAC 59.936 52.381 11.96 0.00 0.00 4.57
298 299 1.846541 GCTTCTAGATCGACTGCACC 58.153 55.000 0.00 0.00 0.00 5.01
299 300 1.407258 GCTTCTAGATCGACTGCACCT 59.593 52.381 0.00 0.00 0.00 4.00
300 301 2.159170 GCTTCTAGATCGACTGCACCTT 60.159 50.000 0.00 0.00 0.00 3.50
301 302 3.701241 CTTCTAGATCGACTGCACCTTC 58.299 50.000 0.00 0.00 0.00 3.46
302 303 2.723273 TCTAGATCGACTGCACCTTCA 58.277 47.619 0.00 0.00 0.00 3.02
303 304 2.423892 TCTAGATCGACTGCACCTTCAC 59.576 50.000 0.00 0.00 0.00 3.18
304 305 0.109086 AGATCGACTGCACCTTCACG 60.109 55.000 0.00 0.00 0.00 4.35
305 306 1.687494 GATCGACTGCACCTTCACGC 61.687 60.000 0.00 0.00 0.00 5.34
306 307 2.434658 ATCGACTGCACCTTCACGCA 62.435 55.000 0.00 0.00 36.52 5.24
307 308 2.029288 CGACTGCACCTTCACGCAT 61.029 57.895 0.00 0.00 37.54 4.73
308 309 1.499056 GACTGCACCTTCACGCATG 59.501 57.895 0.00 0.00 37.54 4.06
309 310 1.227943 ACTGCACCTTCACGCATGT 60.228 52.632 0.00 0.00 37.54 3.21
310 311 0.819259 ACTGCACCTTCACGCATGTT 60.819 50.000 0.00 0.00 37.54 2.71
311 312 0.386352 CTGCACCTTCACGCATGTTG 60.386 55.000 0.00 0.00 37.54 3.33
312 313 1.081242 GCACCTTCACGCATGTTGG 60.081 57.895 0.00 0.00 0.00 3.77
313 314 1.580942 CACCTTCACGCATGTTGGG 59.419 57.895 0.00 0.00 36.28 4.12
314 315 1.603455 ACCTTCACGCATGTTGGGG 60.603 57.895 0.00 1.96 34.28 4.96
315 316 2.568090 CTTCACGCATGTTGGGGC 59.432 61.111 0.00 0.00 34.28 5.80
316 317 2.988684 TTCACGCATGTTGGGGCC 60.989 61.111 0.00 0.00 34.28 5.80
332 333 4.410400 CCCCGCCACCCTTGAGAC 62.410 72.222 0.00 0.00 0.00 3.36
333 334 4.760047 CCCGCCACCCTTGAGACG 62.760 72.222 0.00 0.00 0.00 4.18
337 338 4.760047 CCACCCTTGAGACGCGGG 62.760 72.222 12.47 1.69 43.79 6.13
338 339 3.691342 CACCCTTGAGACGCGGGA 61.691 66.667 12.47 0.00 40.55 5.14
339 340 3.382832 ACCCTTGAGACGCGGGAG 61.383 66.667 12.47 0.00 40.55 4.30
340 341 4.148825 CCCTTGAGACGCGGGAGG 62.149 72.222 12.47 9.67 40.55 4.30
350 351 3.855853 GCGGGAGGGAGGAAGAGC 61.856 72.222 0.00 0.00 0.00 4.09
351 352 3.157949 CGGGAGGGAGGAAGAGCC 61.158 72.222 0.00 0.00 0.00 4.70
352 353 2.770475 GGGAGGGAGGAAGAGCCC 60.770 72.222 0.00 0.00 45.04 5.19
353 354 2.770475 GGAGGGAGGAAGAGCCCC 60.770 72.222 0.00 0.00 45.89 5.80
354 355 2.770475 GAGGGAGGAAGAGCCCCC 60.770 72.222 0.00 0.00 45.89 5.40
355 356 4.806339 AGGGAGGAAGAGCCCCCG 62.806 72.222 0.00 0.00 46.35 5.73
421 422 3.695825 GGTGGGAGGAGGGGAGGA 61.696 72.222 0.00 0.00 0.00 3.71
422 423 2.454941 GTGGGAGGAGGGGAGGAA 59.545 66.667 0.00 0.00 0.00 3.36
423 424 1.690985 GTGGGAGGAGGGGAGGAAG 60.691 68.421 0.00 0.00 0.00 3.46
424 425 1.866997 TGGGAGGAGGGGAGGAAGA 60.867 63.158 0.00 0.00 0.00 2.87
425 426 1.238896 TGGGAGGAGGGGAGGAAGAT 61.239 60.000 0.00 0.00 0.00 2.40
426 427 0.766288 GGGAGGAGGGGAGGAAGATG 60.766 65.000 0.00 0.00 0.00 2.90
427 428 0.766288 GGAGGAGGGGAGGAAGATGG 60.766 65.000 0.00 0.00 0.00 3.51
428 429 0.766288 GAGGAGGGGAGGAAGATGGG 60.766 65.000 0.00 0.00 0.00 4.00
429 430 2.456443 GGAGGGGAGGAAGATGGGC 61.456 68.421 0.00 0.00 0.00 5.36
430 431 1.385206 GAGGGGAGGAAGATGGGCT 60.385 63.158 0.00 0.00 0.00 5.19
431 432 0.104934 GAGGGGAGGAAGATGGGCTA 60.105 60.000 0.00 0.00 0.00 3.93
432 433 0.104725 AGGGGAGGAAGATGGGCTAG 60.105 60.000 0.00 0.00 0.00 3.42
433 434 1.130678 GGGGAGGAAGATGGGCTAGG 61.131 65.000 0.00 0.00 0.00 3.02
434 435 1.757949 GGAGGAAGATGGGCTAGGC 59.242 63.158 8.00 8.00 0.00 3.93
459 460 4.176752 GCGGCTAGGGTTGGGGAG 62.177 72.222 0.00 0.00 0.00 4.30
460 461 4.176752 CGGCTAGGGTTGGGGAGC 62.177 72.222 0.00 0.00 0.00 4.70
500 501 4.699522 GGGCGATGCGGGGGTATC 62.700 72.222 0.00 0.00 0.00 2.24
501 502 3.626924 GGCGATGCGGGGGTATCT 61.627 66.667 0.00 0.00 0.00 1.98
502 503 2.426023 GCGATGCGGGGGTATCTT 59.574 61.111 0.00 0.00 0.00 2.40
503 504 1.961277 GCGATGCGGGGGTATCTTG 60.961 63.158 0.00 0.00 0.00 3.02
504 505 1.961277 CGATGCGGGGGTATCTTGC 60.961 63.158 0.00 0.00 0.00 4.01
505 506 1.961277 GATGCGGGGGTATCTTGCG 60.961 63.158 0.00 0.00 0.00 4.85
506 507 2.660258 GATGCGGGGGTATCTTGCGT 62.660 60.000 0.00 0.00 0.00 5.24
507 508 1.404479 ATGCGGGGGTATCTTGCGTA 61.404 55.000 0.00 0.00 0.00 4.42
508 509 1.144496 GCGGGGGTATCTTGCGTAA 59.856 57.895 0.00 0.00 0.00 3.18
509 510 1.156034 GCGGGGGTATCTTGCGTAAC 61.156 60.000 0.00 0.00 0.00 2.50
510 511 0.462789 CGGGGGTATCTTGCGTAACT 59.537 55.000 0.00 0.00 0.00 2.24
511 512 1.134610 CGGGGGTATCTTGCGTAACTT 60.135 52.381 0.00 0.00 0.00 2.66
512 513 2.101249 CGGGGGTATCTTGCGTAACTTA 59.899 50.000 0.00 0.00 0.00 2.24
513 514 3.461061 GGGGGTATCTTGCGTAACTTAC 58.539 50.000 0.00 0.00 0.00 2.34
514 515 3.133542 GGGGGTATCTTGCGTAACTTACT 59.866 47.826 0.00 0.00 0.00 2.24
515 516 4.366586 GGGGTATCTTGCGTAACTTACTC 58.633 47.826 0.00 0.00 0.00 2.59
516 517 4.142093 GGGGTATCTTGCGTAACTTACTCA 60.142 45.833 4.02 0.00 0.00 3.41
517 518 5.041940 GGGTATCTTGCGTAACTTACTCAG 58.958 45.833 0.00 0.00 0.00 3.35
518 519 5.393896 GGGTATCTTGCGTAACTTACTCAGT 60.394 44.000 0.00 0.00 37.30 3.41
520 521 6.589139 GGTATCTTGCGTAACTTACTCAGTTT 59.411 38.462 0.00 0.00 43.89 2.66
521 522 7.756722 GGTATCTTGCGTAACTTACTCAGTTTA 59.243 37.037 0.00 0.00 43.89 2.01
522 523 9.298774 GTATCTTGCGTAACTTACTCAGTTTAT 57.701 33.333 0.00 0.00 43.89 1.40
528 529 9.520204 TGCGTAACTTACTCAGTTTATATAACC 57.480 33.333 0.00 0.00 43.89 2.85
529 530 8.972349 GCGTAACTTACTCAGTTTATATAACCC 58.028 37.037 0.00 0.00 43.89 4.11
530 531 9.173939 CGTAACTTACTCAGTTTATATAACCCG 57.826 37.037 0.00 0.00 43.89 5.28
538 539 9.939802 ACTCAGTTTATATAACCCGATTAATCC 57.060 33.333 9.87 0.00 0.00 3.01
550 551 8.732746 AACCCGATTAATCCTATTACATATGC 57.267 34.615 9.87 0.00 0.00 3.14
643 646 6.836527 AGCTTAGGTATCTATGAACAGTGTCT 59.163 38.462 0.00 0.00 0.00 3.41
679 682 6.987386 TCGTATTGGGCCCATAATAAAAATG 58.013 36.000 29.23 7.54 0.00 2.32
688 691 8.957466 GGGCCCATAATAAAAATGATAGTAGAC 58.043 37.037 19.95 0.00 0.00 2.59
708 711 8.516234 AGTAGACGAATATCACTAATTAGCAGG 58.484 37.037 12.54 3.01 0.00 4.85
1452 1467 0.537143 AAACCCTTCATGTGCTGCGA 60.537 50.000 0.00 0.00 0.00 5.10
1785 1802 3.165058 TGGTAAGAGCTAACTCATGCG 57.835 47.619 0.00 0.00 46.09 4.73
1833 1850 5.932883 TGCATATGACTACTCTACTACTCCG 59.067 44.000 6.97 0.00 0.00 4.63
1949 1966 3.325425 TGGGGAGAAACATGAACGAGTAA 59.675 43.478 0.00 0.00 0.00 2.24
2257 2274 4.760715 GGAAGTTTACTCAACTCCCCTTTC 59.239 45.833 0.00 0.00 45.77 2.62
2258 2275 4.368565 AGTTTACTCAACTCCCCTTTCC 57.631 45.455 0.00 0.00 42.62 3.13
2259 2276 3.981375 AGTTTACTCAACTCCCCTTTCCT 59.019 43.478 0.00 0.00 42.62 3.36
2260 2277 4.041815 AGTTTACTCAACTCCCCTTTCCTC 59.958 45.833 0.00 0.00 42.62 3.71
2344 2361 3.781341 CATGCATGCAAAAACACTGTC 57.219 42.857 26.68 0.00 0.00 3.51
2347 2364 3.382855 TGCATGCAAAAACACTGTCATC 58.617 40.909 20.30 0.00 0.00 2.92
2365 2382 9.502091 ACTGTCATCAAGTTTAATTGCTTACTA 57.498 29.630 0.00 0.00 0.00 1.82
2392 2409 7.962918 GGTTGTCACTAATTGTGTAGCTTAATG 59.037 37.037 0.00 0.00 46.27 1.90
2775 2796 1.423921 GTTGGGGAAGAAGAGGTCCAA 59.576 52.381 0.00 0.00 35.44 3.53
3090 3111 9.052080 CGAATTAAGTTAACTAGAGCTTTTTGC 57.948 33.333 8.92 0.00 43.29 3.68
3218 3239 5.026038 TGCATCACATGTCTATGTCATGA 57.974 39.130 15.66 0.00 45.41 3.07
3219 3240 5.617252 TGCATCACATGTCTATGTCATGAT 58.383 37.500 15.66 2.63 45.41 2.45
3220 3241 5.468746 TGCATCACATGTCTATGTCATGATG 59.531 40.000 15.66 13.34 45.41 3.07
3431 3452 0.940126 GGTCTGGAACATGCGCATAG 59.060 55.000 24.84 16.60 38.20 2.23
3499 6963 1.154197 GTAACTTCGGACACTTGCCC 58.846 55.000 0.00 0.00 0.00 5.36
3623 7088 1.207811 GCCCACAGCCAAATTATTGCT 59.792 47.619 0.00 0.00 35.10 3.91
3663 7128 7.460910 TGGGACAACATATATGATATGTGCTT 58.539 34.615 25.24 8.11 38.10 3.91
3686 7151 7.977853 GCTTGCATGCATAATAAGGCTATAAAT 59.022 33.333 23.37 0.00 32.35 1.40
3705 7170 4.404507 AATTGTACTGATGACGTGCAAC 57.595 40.909 0.00 0.00 39.22 4.17
3709 7174 0.392706 ACTGATGACGTGCAACCTCA 59.607 50.000 0.00 0.00 36.35 3.86
3715 7180 0.924090 GACGTGCAACCTCATCGATC 59.076 55.000 0.00 0.00 0.00 3.69
3776 7246 8.355169 CACAATCTAATGCCTATGCTTATGTTT 58.645 33.333 0.00 0.00 38.71 2.83
3779 7249 7.734924 TCTAATGCCTATGCTTATGTTTCAG 57.265 36.000 0.00 0.00 38.71 3.02
3786 7256 4.606457 ATGCTTATGTTTCAGAGTTCGC 57.394 40.909 0.00 0.00 0.00 4.70
3806 7276 4.099120 CGCAACTCTAGCTAGTTAGTGTG 58.901 47.826 20.10 16.20 37.61 3.82
3885 7355 4.569653 CCCCATCCATTGAGTTTGTAAGGA 60.570 45.833 0.00 0.00 0.00 3.36
4110 7582 5.208890 AGTTGAAAGCCTAAAAACTTCCCT 58.791 37.500 0.00 0.00 0.00 4.20
4139 7611 3.857157 AAGCCTAGAAACTTGTGTCCA 57.143 42.857 0.00 0.00 0.00 4.02
4172 7644 6.398655 TTCGGATAGAGGGGTAGTATGTAT 57.601 41.667 0.00 0.00 0.00 2.29
4173 7645 6.398655 TCGGATAGAGGGGTAGTATGTATT 57.601 41.667 0.00 0.00 0.00 1.89
4174 7646 7.515004 TCGGATAGAGGGGTAGTATGTATTA 57.485 40.000 0.00 0.00 0.00 0.98
4175 7647 7.341805 TCGGATAGAGGGGTAGTATGTATTAC 58.658 42.308 0.00 0.00 0.00 1.89
4176 7648 7.037370 TCGGATAGAGGGGTAGTATGTATTACA 60.037 40.741 0.00 0.00 32.87 2.41
4182 7654 8.759782 AGAGGGGTAGTATGTATTACATAATGC 58.240 37.037 21.18 19.69 42.15 3.56
4193 7665 8.671384 TGTATTACATAATGCCCTTGTCTTAC 57.329 34.615 0.00 0.00 0.00 2.34
4199 7671 2.356665 TGCCCTTGTCTTACAAAGCA 57.643 45.000 11.16 11.16 41.90 3.91
4200 7672 2.660572 TGCCCTTGTCTTACAAAGCAA 58.339 42.857 12.27 1.88 41.49 3.91
4203 7675 3.578688 CCCTTGTCTTACAAAGCAATGC 58.421 45.455 0.00 0.00 37.69 3.56
4214 7686 3.816523 ACAAAGCAATGCCATCCAAAAAG 59.183 39.130 0.00 0.00 0.00 2.27
4220 7692 3.874392 ATGCCATCCAAAAAGTGCTAC 57.126 42.857 0.00 0.00 0.00 3.58
4243 7715 4.734854 CGTCTTCAACAACAAATGAACTGG 59.265 41.667 0.00 0.00 32.46 4.00
4244 7716 5.448496 CGTCTTCAACAACAAATGAACTGGA 60.448 40.000 0.00 0.00 32.46 3.86
4245 7717 6.507023 GTCTTCAACAACAAATGAACTGGAT 58.493 36.000 0.00 0.00 32.46 3.41
4246 7718 6.980397 GTCTTCAACAACAAATGAACTGGATT 59.020 34.615 0.00 0.00 32.46 3.01
4247 7719 7.492344 GTCTTCAACAACAAATGAACTGGATTT 59.508 33.333 0.00 0.00 32.46 2.17
4248 7720 7.492020 TCTTCAACAACAAATGAACTGGATTTG 59.508 33.333 0.00 0.00 43.53 2.32
4249 7721 6.871844 TCAACAACAAATGAACTGGATTTGA 58.128 32.000 11.21 0.00 41.44 2.69
4250 7722 7.499292 TCAACAACAAATGAACTGGATTTGAT 58.501 30.769 11.21 0.00 41.44 2.57
4251 7723 7.986320 TCAACAACAAATGAACTGGATTTGATT 59.014 29.630 11.21 1.50 41.44 2.57
4252 7724 7.718272 ACAACAAATGAACTGGATTTGATTG 57.282 32.000 11.21 12.41 41.44 2.67
4253 7725 7.499292 ACAACAAATGAACTGGATTTGATTGA 58.501 30.769 11.21 0.00 41.44 2.57
4254 7726 7.986320 ACAACAAATGAACTGGATTTGATTGAA 59.014 29.630 11.21 0.00 41.44 2.69
4255 7727 8.828644 CAACAAATGAACTGGATTTGATTGAAA 58.171 29.630 11.21 0.00 41.44 2.69
4256 7728 8.369218 ACAAATGAACTGGATTTGATTGAAAC 57.631 30.769 11.21 0.00 41.44 2.78
4257 7729 7.986320 ACAAATGAACTGGATTTGATTGAAACA 59.014 29.630 11.21 0.00 41.44 2.83
4258 7730 8.995220 CAAATGAACTGGATTTGATTGAAACAT 58.005 29.630 0.00 0.00 41.44 2.71
4259 7731 8.767478 AATGAACTGGATTTGATTGAAACATC 57.233 30.769 0.00 0.00 0.00 3.06
4260 7732 6.380995 TGAACTGGATTTGATTGAAACATCG 58.619 36.000 0.00 0.00 0.00 3.84
4261 7733 5.964958 ACTGGATTTGATTGAAACATCGT 57.035 34.783 0.00 0.00 0.00 3.73
4262 7734 6.331369 ACTGGATTTGATTGAAACATCGTT 57.669 33.333 0.00 0.00 0.00 3.85
4263 7735 6.381801 ACTGGATTTGATTGAAACATCGTTC 58.618 36.000 0.00 0.00 0.00 3.95
4264 7736 6.207417 ACTGGATTTGATTGAAACATCGTTCT 59.793 34.615 0.00 0.00 0.00 3.01
4265 7737 6.611381 TGGATTTGATTGAAACATCGTTCTC 58.389 36.000 0.00 0.00 0.00 2.87
4266 7738 6.030228 GGATTTGATTGAAACATCGTTCTCC 58.970 40.000 0.00 0.00 0.00 3.71
4267 7739 5.371115 TTTGATTGAAACATCGTTCTCCC 57.629 39.130 0.00 0.00 0.00 4.30
4268 7740 3.000041 TGATTGAAACATCGTTCTCCCG 59.000 45.455 0.00 0.00 0.00 5.14
4269 7741 2.823924 TTGAAACATCGTTCTCCCGA 57.176 45.000 0.00 0.00 41.73 5.14
4270 7742 2.363788 TGAAACATCGTTCTCCCGAG 57.636 50.000 0.00 0.00 40.68 4.63
4271 7743 1.616865 TGAAACATCGTTCTCCCGAGT 59.383 47.619 0.00 0.00 40.68 4.18
4272 7744 2.260481 GAAACATCGTTCTCCCGAGTC 58.740 52.381 0.00 0.00 40.68 3.36
4273 7745 0.170561 AACATCGTTCTCCCGAGTCG 59.829 55.000 5.29 5.29 40.68 4.18
4274 7746 1.586564 CATCGTTCTCCCGAGTCGC 60.587 63.158 7.12 0.00 40.68 5.19
4275 7747 2.772691 ATCGTTCTCCCGAGTCGCC 61.773 63.158 7.12 0.00 40.68 5.54
4276 7748 4.493747 CGTTCTCCCGAGTCGCCC 62.494 72.222 7.12 0.00 0.00 6.13
4277 7749 4.493747 GTTCTCCCGAGTCGCCCG 62.494 72.222 7.12 0.00 0.00 6.13
4290 7762 4.570874 GCCCGCCCTCCCATCTTC 62.571 72.222 0.00 0.00 0.00 2.87
4291 7763 3.878667 CCCGCCCTCCCATCTTCC 61.879 72.222 0.00 0.00 0.00 3.46
4292 7764 3.878667 CCGCCCTCCCATCTTCCC 61.879 72.222 0.00 0.00 0.00 3.97
4293 7765 2.770048 CGCCCTCCCATCTTCCCT 60.770 66.667 0.00 0.00 0.00 4.20
4294 7766 2.812619 CGCCCTCCCATCTTCCCTC 61.813 68.421 0.00 0.00 0.00 4.30
4295 7767 2.456443 GCCCTCCCATCTTCCCTCC 61.456 68.421 0.00 0.00 0.00 4.30
4296 7768 1.319799 CCCTCCCATCTTCCCTCCT 59.680 63.158 0.00 0.00 0.00 3.69
4297 7769 1.059006 CCCTCCCATCTTCCCTCCTG 61.059 65.000 0.00 0.00 0.00 3.86
4298 7770 0.030705 CCTCCCATCTTCCCTCCTGA 60.031 60.000 0.00 0.00 0.00 3.86
4299 7771 1.422531 CTCCCATCTTCCCTCCTGAG 58.577 60.000 0.00 0.00 0.00 3.35
4300 7772 0.719015 TCCCATCTTCCCTCCTGAGT 59.281 55.000 0.00 0.00 0.00 3.41
4301 7773 1.127343 CCCATCTTCCCTCCTGAGTC 58.873 60.000 0.00 0.00 0.00 3.36
4302 7774 1.623557 CCCATCTTCCCTCCTGAGTCA 60.624 57.143 0.00 0.00 0.00 3.41
4303 7775 1.484240 CCATCTTCCCTCCTGAGTCAC 59.516 57.143 0.00 0.00 0.00 3.67
4304 7776 1.484240 CATCTTCCCTCCTGAGTCACC 59.516 57.143 0.00 0.00 0.00 4.02
4305 7777 0.252284 TCTTCCCTCCTGAGTCACCC 60.252 60.000 0.00 0.00 0.00 4.61
4306 7778 1.229529 TTCCCTCCTGAGTCACCCC 60.230 63.158 0.00 0.00 0.00 4.95
4307 7779 2.689034 CCCTCCTGAGTCACCCCC 60.689 72.222 0.00 0.00 0.00 5.40
4362 7834 4.400251 CGGTCCTCCCCCACTCCT 62.400 72.222 0.00 0.00 0.00 3.69
4363 7835 2.365768 GGTCCTCCCCCACTCCTC 60.366 72.222 0.00 0.00 0.00 3.71
4364 7836 2.365768 GTCCTCCCCCACTCCTCC 60.366 72.222 0.00 0.00 0.00 4.30
4365 7837 2.540910 TCCTCCCCCACTCCTCCT 60.541 66.667 0.00 0.00 0.00 3.69
4366 7838 2.041405 CCTCCCCCACTCCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
4367 7839 2.041405 CTCCCCCACTCCTCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
4368 7840 2.540910 TCCCCCACTCCTCCTCCT 60.541 66.667 0.00 0.00 0.00 3.69
4369 7841 2.041405 CCCCCACTCCTCCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
4370 7842 2.041405 CCCCACTCCTCCTCCTCC 60.041 72.222 0.00 0.00 0.00 4.30
4371 7843 2.641746 CCCCACTCCTCCTCCTCCT 61.642 68.421 0.00 0.00 0.00 3.69
4372 7844 1.075600 CCCACTCCTCCTCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
4373 7845 1.075600 CCACTCCTCCTCCTCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
4374 7846 1.075600 CACTCCTCCTCCTCCTCCC 60.076 68.421 0.00 0.00 0.00 4.30
4375 7847 1.230819 ACTCCTCCTCCTCCTCCCT 60.231 63.158 0.00 0.00 0.00 4.20
4376 7848 1.293683 ACTCCTCCTCCTCCTCCCTC 61.294 65.000 0.00 0.00 0.00 4.30
4377 7849 2.197324 CCTCCTCCTCCTCCCTCG 59.803 72.222 0.00 0.00 0.00 4.63
4378 7850 2.520741 CTCCTCCTCCTCCCTCGC 60.521 72.222 0.00 0.00 0.00 5.03
4379 7851 3.024356 TCCTCCTCCTCCCTCGCT 61.024 66.667 0.00 0.00 0.00 4.93
4380 7852 2.837291 CCTCCTCCTCCCTCGCTG 60.837 72.222 0.00 0.00 0.00 5.18
4381 7853 3.535962 CTCCTCCTCCCTCGCTGC 61.536 72.222 0.00 0.00 0.00 5.25
4384 7856 4.154347 CTCCTCCCTCGCTGCCAC 62.154 72.222 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.363577 GATCTCGAGATCCATCATCTAGTC 57.636 45.833 35.46 14.62 42.48 2.59
17 18 0.387202 AGCTTGGTGATCGGATCTCG 59.613 55.000 18.16 4.70 40.90 4.04
18 19 2.102252 AGAAGCTTGGTGATCGGATCTC 59.898 50.000 18.16 14.37 0.00 2.75
19 20 2.114616 AGAAGCTTGGTGATCGGATCT 58.885 47.619 18.16 0.00 0.00 2.75
20 21 2.208431 CAGAAGCTTGGTGATCGGATC 58.792 52.381 2.10 11.07 0.00 3.36
21 22 1.134280 CCAGAAGCTTGGTGATCGGAT 60.134 52.381 2.10 0.00 33.38 4.18
22 23 0.250234 CCAGAAGCTTGGTGATCGGA 59.750 55.000 2.10 0.00 33.38 4.55
23 24 1.372087 GCCAGAAGCTTGGTGATCGG 61.372 60.000 2.10 0.00 40.49 4.18
24 25 1.372087 GGCCAGAAGCTTGGTGATCG 61.372 60.000 2.10 0.00 43.05 3.69
25 26 1.372087 CGGCCAGAAGCTTGGTGATC 61.372 60.000 2.10 0.00 43.05 2.92
26 27 1.377725 CGGCCAGAAGCTTGGTGAT 60.378 57.895 2.10 0.00 43.05 3.06
27 28 2.032528 CGGCCAGAAGCTTGGTGA 59.967 61.111 2.10 0.00 43.05 4.02
28 29 3.058160 CCGGCCAGAAGCTTGGTG 61.058 66.667 2.10 0.28 43.05 4.17
45 46 0.960364 TCTTCTTCATTGGCGGTGGC 60.960 55.000 0.00 0.00 38.90 5.01
46 47 1.402968 CATCTTCTTCATTGGCGGTGG 59.597 52.381 0.00 0.00 0.00 4.61
47 48 2.096496 GTCATCTTCTTCATTGGCGGTG 59.904 50.000 0.00 0.00 0.00 4.94
48 49 2.359900 GTCATCTTCTTCATTGGCGGT 58.640 47.619 0.00 0.00 0.00 5.68
49 50 1.672881 GGTCATCTTCTTCATTGGCGG 59.327 52.381 0.00 0.00 0.00 6.13
50 51 2.096496 GTGGTCATCTTCTTCATTGGCG 59.904 50.000 0.00 0.00 0.00 5.69
51 52 2.424956 GGTGGTCATCTTCTTCATTGGC 59.575 50.000 0.00 0.00 0.00 4.52
52 53 3.441572 GTGGTGGTCATCTTCTTCATTGG 59.558 47.826 0.00 0.00 0.00 3.16
53 54 3.441572 GGTGGTGGTCATCTTCTTCATTG 59.558 47.826 0.00 0.00 0.00 2.82
54 55 3.074390 TGGTGGTGGTCATCTTCTTCATT 59.926 43.478 0.00 0.00 0.00 2.57
55 56 2.644299 TGGTGGTGGTCATCTTCTTCAT 59.356 45.455 0.00 0.00 0.00 2.57
56 57 2.054021 TGGTGGTGGTCATCTTCTTCA 58.946 47.619 0.00 0.00 0.00 3.02
57 58 2.039084 AGTGGTGGTGGTCATCTTCTTC 59.961 50.000 0.00 0.00 0.00 2.87
58 59 2.057922 AGTGGTGGTGGTCATCTTCTT 58.942 47.619 0.00 0.00 0.00 2.52
59 60 1.349026 CAGTGGTGGTGGTCATCTTCT 59.651 52.381 0.00 0.00 0.00 2.85
60 61 1.611673 CCAGTGGTGGTGGTCATCTTC 60.612 57.143 0.00 0.00 39.30 2.87
61 62 0.401738 CCAGTGGTGGTGGTCATCTT 59.598 55.000 0.00 0.00 39.30 2.40
62 63 2.069776 CCAGTGGTGGTGGTCATCT 58.930 57.895 0.00 0.00 39.30 2.90
63 64 1.675641 GCCAGTGGTGGTGGTCATC 60.676 63.158 11.74 0.00 46.96 2.92
64 65 0.840288 TAGCCAGTGGTGGTGGTCAT 60.840 55.000 11.74 0.00 46.96 3.06
65 66 1.460497 TAGCCAGTGGTGGTGGTCA 60.460 57.895 11.74 0.00 46.96 4.02
66 67 1.003718 GTAGCCAGTGGTGGTGGTC 60.004 63.158 11.74 0.00 46.96 4.02
67 68 2.879233 CGTAGCCAGTGGTGGTGGT 61.879 63.158 11.74 0.00 46.96 4.16
68 69 2.047274 CGTAGCCAGTGGTGGTGG 60.047 66.667 11.74 0.00 46.96 4.61
81 82 0.456221 ATCTGTTCTGGTCGGCGTAG 59.544 55.000 6.85 4.48 0.00 3.51
82 83 0.454600 GATCTGTTCTGGTCGGCGTA 59.545 55.000 6.85 0.00 0.00 4.42
83 84 1.215647 GATCTGTTCTGGTCGGCGT 59.784 57.895 6.85 0.00 0.00 5.68
84 85 0.803768 CAGATCTGTTCTGGTCGGCG 60.804 60.000 14.95 0.00 46.89 6.46
85 86 3.056628 CAGATCTGTTCTGGTCGGC 57.943 57.895 14.95 0.00 46.89 5.54
92 93 1.064906 CACCCATGGCAGATCTGTTCT 60.065 52.381 23.38 5.96 33.90 3.01
93 94 1.386533 CACCCATGGCAGATCTGTTC 58.613 55.000 23.38 16.03 0.00 3.18
94 95 0.682209 GCACCCATGGCAGATCTGTT 60.682 55.000 23.38 6.84 0.00 3.16
95 96 1.077212 GCACCCATGGCAGATCTGT 60.077 57.895 23.38 1.24 0.00 3.41
96 97 3.837578 GCACCCATGGCAGATCTG 58.162 61.111 18.84 18.84 0.00 2.90
113 114 4.641645 TGGTGGACTGCTTGGCGG 62.642 66.667 0.00 0.00 41.29 6.13
114 115 3.052082 CTGGTGGACTGCTTGGCG 61.052 66.667 0.00 0.00 0.00 5.69
115 116 2.674380 CCTGGTGGACTGCTTGGC 60.674 66.667 0.00 0.00 34.57 4.52
116 117 2.674380 GCCTGGTGGACTGCTTGG 60.674 66.667 0.00 0.00 34.57 3.61
117 118 2.674380 GGCCTGGTGGACTGCTTG 60.674 66.667 0.00 0.00 38.69 4.01
118 119 3.971702 GGGCCTGGTGGACTGCTT 61.972 66.667 0.84 0.00 42.43 3.91
119 120 4.990910 AGGGCCTGGTGGACTGCT 62.991 66.667 4.50 0.00 42.43 4.24
120 121 4.416738 GAGGGCCTGGTGGACTGC 62.417 72.222 12.95 0.00 42.43 4.40
121 122 4.087892 CGAGGGCCTGGTGGACTG 62.088 72.222 12.95 0.00 42.43 3.51
122 123 4.316823 TCGAGGGCCTGGTGGACT 62.317 66.667 12.95 0.00 42.43 3.85
123 124 4.083862 GTCGAGGGCCTGGTGGAC 62.084 72.222 12.95 9.38 41.93 4.02
126 127 4.436998 GACGTCGAGGGCCTGGTG 62.437 72.222 12.95 10.00 0.00 4.17
141 142 2.586773 GCTTTAGATCGGCGGCGAC 61.587 63.158 37.06 27.31 0.00 5.19
142 143 2.279252 GCTTTAGATCGGCGGCGA 60.279 61.111 36.40 36.40 0.00 5.54
143 144 3.338676 GGCTTTAGATCGGCGGCG 61.339 66.667 27.15 27.15 0.00 6.46
144 145 2.203015 TGGCTTTAGATCGGCGGC 60.203 61.111 7.21 0.00 0.00 6.53
145 146 0.034059 ATCTGGCTTTAGATCGGCGG 59.966 55.000 7.21 0.00 31.97 6.13
146 147 1.143305 CATCTGGCTTTAGATCGGCG 58.857 55.000 0.00 0.00 35.28 6.46
147 148 2.139118 GTCATCTGGCTTTAGATCGGC 58.861 52.381 0.00 0.00 35.28 5.54
148 149 3.459232 TGTCATCTGGCTTTAGATCGG 57.541 47.619 0.00 0.00 35.28 4.18
149 150 3.186001 GCATGTCATCTGGCTTTAGATCG 59.814 47.826 0.00 0.00 35.28 3.69
150 151 3.501445 GGCATGTCATCTGGCTTTAGATC 59.499 47.826 0.00 0.00 35.28 2.75
151 152 3.484407 GGCATGTCATCTGGCTTTAGAT 58.516 45.455 0.00 0.00 37.90 1.98
152 153 2.742856 CGGCATGTCATCTGGCTTTAGA 60.743 50.000 0.00 0.00 37.06 2.10
153 154 1.600957 CGGCATGTCATCTGGCTTTAG 59.399 52.381 0.00 0.00 37.06 1.85
154 155 1.667236 CGGCATGTCATCTGGCTTTA 58.333 50.000 0.00 0.00 37.06 1.85
155 156 1.660560 GCGGCATGTCATCTGGCTTT 61.661 55.000 0.00 0.00 37.06 3.51
156 157 2.117156 GCGGCATGTCATCTGGCTT 61.117 57.895 0.00 0.00 37.06 4.35
157 158 2.515523 GCGGCATGTCATCTGGCT 60.516 61.111 0.00 0.00 37.06 4.75
158 159 3.589881 GGCGGCATGTCATCTGGC 61.590 66.667 3.07 0.00 35.94 4.85
159 160 3.274586 CGGCGGCATGTCATCTGG 61.275 66.667 10.53 0.00 0.00 3.86
160 161 1.769098 CTTCGGCGGCATGTCATCTG 61.769 60.000 10.53 0.00 0.00 2.90
161 162 1.522355 CTTCGGCGGCATGTCATCT 60.522 57.895 10.53 0.00 0.00 2.90
162 163 1.521457 TCTTCGGCGGCATGTCATC 60.521 57.895 10.53 0.00 0.00 2.92
163 164 1.815421 GTCTTCGGCGGCATGTCAT 60.815 57.895 10.53 0.00 0.00 3.06
164 165 2.434185 GTCTTCGGCGGCATGTCA 60.434 61.111 10.53 0.00 0.00 3.58
165 166 3.195698 GGTCTTCGGCGGCATGTC 61.196 66.667 10.53 0.00 0.00 3.06
173 174 3.554692 CACGATGCGGTCTTCGGC 61.555 66.667 0.00 0.00 42.15 5.54
174 175 3.554692 GCACGATGCGGTCTTCGG 61.555 66.667 0.00 3.91 42.15 4.30
175 176 3.554692 GGCACGATGCGGTCTTCG 61.555 66.667 0.00 0.00 46.21 3.79
188 189 3.825833 CTAGATCGGGCGACGGCAC 62.826 68.421 23.66 11.39 44.45 5.01
189 190 3.592814 CTAGATCGGGCGACGGCA 61.593 66.667 23.66 3.53 44.45 5.69
190 191 4.344474 CCTAGATCGGGCGACGGC 62.344 72.222 13.84 13.84 44.45 5.68
191 192 4.344474 GCCTAGATCGGGCGACGG 62.344 72.222 15.00 0.00 44.45 4.79
197 198 3.996124 CGGCTGGCCTAGATCGGG 61.996 72.222 3.32 3.81 0.00 5.14
198 199 4.671569 GCGGCTGGCCTAGATCGG 62.672 72.222 3.32 0.00 34.80 4.18
261 262 3.774702 GACGGCGTTGGCTTCGAC 61.775 66.667 16.19 0.00 39.81 4.20
268 269 2.126228 TAGAAGCGACGGCGTTGG 60.126 61.111 27.17 17.27 46.35 3.77
269 270 0.525668 ATCTAGAAGCGACGGCGTTG 60.526 55.000 22.69 22.69 46.35 4.10
270 271 0.248539 GATCTAGAAGCGACGGCGTT 60.249 55.000 16.19 1.65 46.35 4.84
271 272 1.355916 GATCTAGAAGCGACGGCGT 59.644 57.895 14.65 14.65 46.35 5.68
272 273 1.722852 CGATCTAGAAGCGACGGCG 60.723 63.158 6.12 6.12 46.35 6.46
273 274 0.657951 GTCGATCTAGAAGCGACGGC 60.658 60.000 25.60 12.92 43.76 5.68
274 275 3.441246 GTCGATCTAGAAGCGACGG 57.559 57.895 25.60 2.07 43.76 4.79
277 278 1.064208 GTGCAGTCGATCTAGAAGCGA 59.936 52.381 14.70 14.70 0.00 4.93
278 279 1.471964 GTGCAGTCGATCTAGAAGCG 58.528 55.000 10.99 10.99 0.00 4.68
279 280 1.407258 AGGTGCAGTCGATCTAGAAGC 59.593 52.381 0.00 0.00 0.00 3.86
280 281 3.129462 TGAAGGTGCAGTCGATCTAGAAG 59.871 47.826 0.00 0.00 0.00 2.85
281 282 3.089284 TGAAGGTGCAGTCGATCTAGAA 58.911 45.455 0.00 0.00 0.00 2.10
282 283 2.423892 GTGAAGGTGCAGTCGATCTAGA 59.576 50.000 0.00 0.00 0.00 2.43
283 284 2.792890 CGTGAAGGTGCAGTCGATCTAG 60.793 54.545 0.00 0.00 0.00 2.43
284 285 1.132453 CGTGAAGGTGCAGTCGATCTA 59.868 52.381 0.00 0.00 0.00 1.98
285 286 0.109086 CGTGAAGGTGCAGTCGATCT 60.109 55.000 0.00 0.00 0.00 2.75
286 287 1.687494 GCGTGAAGGTGCAGTCGATC 61.687 60.000 0.00 0.00 0.00 3.69
287 288 1.738099 GCGTGAAGGTGCAGTCGAT 60.738 57.895 0.00 0.00 0.00 3.59
288 289 2.355837 GCGTGAAGGTGCAGTCGA 60.356 61.111 0.00 0.00 0.00 4.20
289 290 2.029288 ATGCGTGAAGGTGCAGTCG 61.029 57.895 0.00 0.00 45.52 4.18
290 291 1.230635 ACATGCGTGAAGGTGCAGTC 61.231 55.000 14.17 0.00 45.52 3.51
291 292 0.819259 AACATGCGTGAAGGTGCAGT 60.819 50.000 14.17 0.00 45.52 4.40
292 293 0.386352 CAACATGCGTGAAGGTGCAG 60.386 55.000 14.17 0.00 45.52 4.41
293 294 1.653667 CAACATGCGTGAAGGTGCA 59.346 52.632 14.17 0.00 46.51 4.57
294 295 1.081242 CCAACATGCGTGAAGGTGC 60.081 57.895 14.17 0.00 0.00 5.01
295 296 1.580942 CCCAACATGCGTGAAGGTG 59.419 57.895 14.17 4.94 0.00 4.00
296 297 1.603455 CCCCAACATGCGTGAAGGT 60.603 57.895 14.17 0.00 0.00 3.50
297 298 2.993471 GCCCCAACATGCGTGAAGG 61.993 63.158 14.17 13.16 0.00 3.46
298 299 2.568090 GCCCCAACATGCGTGAAG 59.432 61.111 14.17 4.13 0.00 3.02
299 300 2.988684 GGCCCCAACATGCGTGAA 60.989 61.111 14.17 0.00 0.00 3.18
315 316 4.410400 GTCTCAAGGGTGGCGGGG 62.410 72.222 0.00 0.00 0.00 5.73
316 317 4.760047 CGTCTCAAGGGTGGCGGG 62.760 72.222 0.00 0.00 0.00 6.13
320 321 4.760047 CCCGCGTCTCAAGGGTGG 62.760 72.222 4.92 0.00 40.27 4.61
321 322 3.649277 CTCCCGCGTCTCAAGGGTG 62.649 68.421 4.92 0.00 45.27 4.61
322 323 3.382832 CTCCCGCGTCTCAAGGGT 61.383 66.667 4.92 0.00 45.27 4.34
323 324 4.148825 CCTCCCGCGTCTCAAGGG 62.149 72.222 4.92 0.00 46.40 3.95
324 325 4.148825 CCCTCCCGCGTCTCAAGG 62.149 72.222 4.92 3.94 0.00 3.61
325 326 3.068691 TCCCTCCCGCGTCTCAAG 61.069 66.667 4.92 0.00 0.00 3.02
326 327 3.068691 CTCCCTCCCGCGTCTCAA 61.069 66.667 4.92 0.00 0.00 3.02
328 329 4.816984 TCCTCCCTCCCGCGTCTC 62.817 72.222 4.92 0.00 0.00 3.36
329 330 4.377760 TTCCTCCCTCCCGCGTCT 62.378 66.667 4.92 0.00 0.00 4.18
330 331 3.839432 CTTCCTCCCTCCCGCGTC 61.839 72.222 4.92 0.00 0.00 5.19
331 332 4.377760 TCTTCCTCCCTCCCGCGT 62.378 66.667 4.92 0.00 0.00 6.01
332 333 3.532155 CTCTTCCTCCCTCCCGCG 61.532 72.222 0.00 0.00 0.00 6.46
333 334 3.855853 GCTCTTCCTCCCTCCCGC 61.856 72.222 0.00 0.00 0.00 6.13
334 335 3.157949 GGCTCTTCCTCCCTCCCG 61.158 72.222 0.00 0.00 0.00 5.14
335 336 2.770475 GGGCTCTTCCTCCCTCCC 60.770 72.222 0.00 0.00 39.46 4.30
336 337 2.770475 GGGGCTCTTCCTCCCTCC 60.770 72.222 0.00 0.00 42.25 4.30
404 405 3.268647 TTCCTCCCCTCCTCCCACC 62.269 68.421 0.00 0.00 0.00 4.61
405 406 1.690985 CTTCCTCCCCTCCTCCCAC 60.691 68.421 0.00 0.00 0.00 4.61
406 407 1.238896 ATCTTCCTCCCCTCCTCCCA 61.239 60.000 0.00 0.00 0.00 4.37
407 408 0.766288 CATCTTCCTCCCCTCCTCCC 60.766 65.000 0.00 0.00 0.00 4.30
408 409 0.766288 CCATCTTCCTCCCCTCCTCC 60.766 65.000 0.00 0.00 0.00 4.30
409 410 0.766288 CCCATCTTCCTCCCCTCCTC 60.766 65.000 0.00 0.00 0.00 3.71
410 411 1.319799 CCCATCTTCCTCCCCTCCT 59.680 63.158 0.00 0.00 0.00 3.69
411 412 2.456443 GCCCATCTTCCTCCCCTCC 61.456 68.421 0.00 0.00 0.00 4.30
412 413 0.104934 TAGCCCATCTTCCTCCCCTC 60.105 60.000 0.00 0.00 0.00 4.30
413 414 0.104725 CTAGCCCATCTTCCTCCCCT 60.105 60.000 0.00 0.00 0.00 4.79
414 415 1.130678 CCTAGCCCATCTTCCTCCCC 61.131 65.000 0.00 0.00 0.00 4.81
415 416 1.773856 GCCTAGCCCATCTTCCTCCC 61.774 65.000 0.00 0.00 0.00 4.30
416 417 1.757949 GCCTAGCCCATCTTCCTCC 59.242 63.158 0.00 0.00 0.00 4.30
417 418 1.757949 GGCCTAGCCCATCTTCCTC 59.242 63.158 0.00 0.00 44.06 3.71
418 419 3.994000 GGCCTAGCCCATCTTCCT 58.006 61.111 0.00 0.00 44.06 3.36
442 443 4.176752 CTCCCCAACCCTAGCCGC 62.177 72.222 0.00 0.00 0.00 6.53
443 444 4.176752 GCTCCCCAACCCTAGCCG 62.177 72.222 0.00 0.00 0.00 5.52
445 446 3.015145 TGGCTCCCCAACCCTAGC 61.015 66.667 0.00 0.00 38.46 3.42
446 447 2.680370 GGTGGCTCCCCAACCCTAG 61.680 68.421 0.00 0.00 43.39 3.02
447 448 2.612746 GGTGGCTCCCCAACCCTA 60.613 66.667 0.00 0.00 43.39 3.53
483 484 4.699522 GATACCCCCGCATCGCCC 62.700 72.222 0.00 0.00 0.00 6.13
484 485 3.178540 AAGATACCCCCGCATCGCC 62.179 63.158 0.00 0.00 0.00 5.54
485 486 1.961277 CAAGATACCCCCGCATCGC 60.961 63.158 0.00 0.00 0.00 4.58
486 487 1.961277 GCAAGATACCCCCGCATCG 60.961 63.158 0.00 0.00 0.00 3.84
487 488 1.961277 CGCAAGATACCCCCGCATC 60.961 63.158 0.00 0.00 43.02 3.91
488 489 1.404479 TACGCAAGATACCCCCGCAT 61.404 55.000 0.00 0.00 43.62 4.73
489 490 1.615165 TTACGCAAGATACCCCCGCA 61.615 55.000 0.00 0.00 43.62 5.69
490 491 1.144496 TTACGCAAGATACCCCCGC 59.856 57.895 0.00 0.00 43.62 6.13
491 492 0.462789 AGTTACGCAAGATACCCCCG 59.537 55.000 0.00 0.00 43.62 5.73
492 493 2.704464 AAGTTACGCAAGATACCCCC 57.296 50.000 0.00 0.00 43.62 5.40
493 494 4.142093 TGAGTAAGTTACGCAAGATACCCC 60.142 45.833 15.96 0.00 43.62 4.95
494 495 5.002464 TGAGTAAGTTACGCAAGATACCC 57.998 43.478 15.96 0.00 43.62 3.69
495 496 5.648572 ACTGAGTAAGTTACGCAAGATACC 58.351 41.667 18.33 0.00 38.01 2.73
512 513 9.939802 GGATTAATCGGGTTATATAAACTGAGT 57.060 33.333 23.08 22.60 41.21 3.41
524 525 9.826574 GCATATGTAATAGGATTAATCGGGTTA 57.173 33.333 9.32 5.43 30.86 2.85
525 526 8.325787 TGCATATGTAATAGGATTAATCGGGTT 58.674 33.333 9.32 6.29 30.86 4.11
526 527 7.857456 TGCATATGTAATAGGATTAATCGGGT 58.143 34.615 9.32 0.00 30.86 5.28
527 528 8.777413 CATGCATATGTAATAGGATTAATCGGG 58.223 37.037 9.32 0.00 30.86 5.14
528 529 9.546428 TCATGCATATGTAATAGGATTAATCGG 57.454 33.333 9.32 0.00 30.86 4.18
534 535 9.524496 ACATGTTCATGCATATGTAATAGGATT 57.476 29.630 10.43 0.00 30.86 3.01
542 543 9.504708 TCATTCATACATGTTCATGCATATGTA 57.495 29.630 17.95 17.95 39.49 2.29
543 544 8.398878 TCATTCATACATGTTCATGCATATGT 57.601 30.769 15.28 15.28 37.51 2.29
544 545 9.855021 ATTCATTCATACATGTTCATGCATATG 57.145 29.630 2.30 12.53 35.57 1.78
547 548 9.687210 GTTATTCATTCATACATGTTCATGCAT 57.313 29.630 2.30 0.00 0.00 3.96
548 549 8.905850 AGTTATTCATTCATACATGTTCATGCA 58.094 29.630 2.30 0.00 0.00 3.96
576 577 9.301897 AGACAGAAGAAAAGCTAATATTGGTTT 57.698 29.630 0.00 0.00 36.81 3.27
579 580 8.401709 GGAAGACAGAAGAAAAGCTAATATTGG 58.598 37.037 0.00 0.00 0.00 3.16
643 646 3.676049 GCCCAATACGATCGAGCATCATA 60.676 47.826 24.34 1.48 33.17 2.15
688 691 6.646653 TGAAGCCTGCTAATTAGTGATATTCG 59.353 38.462 13.91 0.00 0.00 3.34
708 711 0.591659 GTCGTGGGGTCTTTTGAAGC 59.408 55.000 0.00 0.00 0.00 3.86
1033 1043 3.349006 GCGCTGGTCTGTGTGTGG 61.349 66.667 0.00 0.00 0.00 4.17
1117 1128 2.764572 ACAAGGAATAGGGTTCGATCGT 59.235 45.455 15.94 0.00 0.00 3.73
1469 1486 7.730364 ATTCTCAGCGACGGAATTAATAATT 57.270 32.000 0.00 0.00 0.00 1.40
1599 1616 0.459489 GGGTGCAACAACACACACAT 59.541 50.000 3.06 0.00 43.71 3.21
1646 1663 0.812811 GAGAGAGCGCATCATGCCAA 60.813 55.000 11.47 0.00 41.12 4.52
1732 1749 3.469008 TGATCGTTGAAGTCCTTGTGT 57.531 42.857 0.00 0.00 0.00 3.72
1785 1802 9.962759 GCACAATTTTATCTTCACAATTGAATC 57.037 29.630 13.59 0.00 41.05 2.52
1974 1991 7.274904 TGAGTGAACGCAGAGTAATTAACATAC 59.725 37.037 0.00 0.00 0.00 2.39
1988 2005 2.602257 TGGGATATGAGTGAACGCAG 57.398 50.000 0.00 0.00 0.00 5.18
2257 2274 0.250513 GTGGTAAGGTGCTCAGGAGG 59.749 60.000 0.00 0.00 0.00 4.30
2258 2275 0.250513 GGTGGTAAGGTGCTCAGGAG 59.749 60.000 0.00 0.00 0.00 3.69
2259 2276 0.178903 AGGTGGTAAGGTGCTCAGGA 60.179 55.000 0.00 0.00 0.00 3.86
2260 2277 0.693049 AAGGTGGTAAGGTGCTCAGG 59.307 55.000 0.00 0.00 0.00 3.86
2344 2361 9.559958 CAACCTAGTAAGCAATTAAACTTGATG 57.440 33.333 0.00 0.00 0.00 3.07
2347 2364 8.564574 TGACAACCTAGTAAGCAATTAAACTTG 58.435 33.333 0.00 0.00 0.00 3.16
2392 2409 7.642669 TGCATGAGCTAACTAATTTAAGCATC 58.357 34.615 0.00 0.00 42.74 3.91
2602 2620 1.021390 CCTTGATGGAGCACACGTCC 61.021 60.000 0.00 0.00 38.35 4.79
2941 2962 0.099968 CGCCGTCGAATCCTCTGTTA 59.900 55.000 0.00 0.00 38.10 2.41
2943 2964 2.490217 CGCCGTCGAATCCTCTGT 59.510 61.111 0.00 0.00 38.10 3.41
3090 3111 1.933115 GCCACATGCACCCGGTTAAG 61.933 60.000 0.00 0.00 40.77 1.85
3218 3239 7.070447 TCATCTTAGTTAGACCTTGAGCATCAT 59.930 37.037 0.00 0.00 39.77 2.45
3219 3240 6.381133 TCATCTTAGTTAGACCTTGAGCATCA 59.619 38.462 0.00 0.00 38.69 3.07
3220 3241 6.810911 TCATCTTAGTTAGACCTTGAGCATC 58.189 40.000 0.00 0.00 35.19 3.91
3315 3336 2.422127 CACATCAGCATGCAAGATCACA 59.578 45.455 21.98 0.00 34.76 3.58
3431 3452 5.006941 ACACAGCAATGCAAGAATTCAAAAC 59.993 36.000 8.35 0.00 0.00 2.43
3623 7088 1.345415 GTCCCAGTGTTCCTCGGTTTA 59.655 52.381 0.00 0.00 0.00 2.01
3641 7106 7.809665 TGCAAGCACATATCATATATGTTGTC 58.190 34.615 12.42 8.92 36.13 3.18
3663 7128 8.805175 ACAATTTATAGCCTTATTATGCATGCA 58.195 29.630 25.04 25.04 0.00 3.96
3686 7151 2.139917 GGTTGCACGTCATCAGTACAA 58.860 47.619 0.00 0.00 0.00 2.41
3705 7170 7.827236 AGAGGTACTATTTCTAGATCGATGAGG 59.173 40.741 0.54 0.00 41.55 3.86
3786 7256 5.646577 ACCACACTAACTAGCTAGAGTTG 57.353 43.478 27.45 18.19 39.96 3.16
3806 7276 5.156608 TGCCTTGAAGGTACTAAGTTACC 57.843 43.478 13.58 0.00 38.49 2.85
3861 7331 1.560505 ACAAACTCAATGGATGGGGC 58.439 50.000 0.00 0.00 31.87 5.80
3885 7355 3.473113 AGACCTAAAAACCCATGCCAT 57.527 42.857 0.00 0.00 0.00 4.40
4052 7524 9.959721 AAAACATGTGTTATATACTCCTTCTGT 57.040 29.630 0.00 0.00 37.25 3.41
4054 7526 9.959721 ACAAAACATGTGTTATATACTCCTTCT 57.040 29.630 0.00 0.00 41.93 2.85
4110 7582 7.093945 ACACAAGTTTCTAGGCTTTTCTTTTGA 60.094 33.333 0.00 0.00 0.00 2.69
4139 7611 4.153411 CCCTCTATCCGAATCTGTAAGGT 58.847 47.826 0.00 0.00 0.00 3.50
4172 7644 7.362574 GCTTTGTAAGACAAGGGCATTATGTAA 60.363 37.037 11.69 0.00 39.53 2.41
4173 7645 6.094881 GCTTTGTAAGACAAGGGCATTATGTA 59.905 38.462 11.69 0.00 39.53 2.29
4174 7646 5.105756 GCTTTGTAAGACAAGGGCATTATGT 60.106 40.000 11.69 0.00 39.53 2.29
4175 7647 5.105797 TGCTTTGTAAGACAAGGGCATTATG 60.106 40.000 13.93 0.00 40.66 1.90
4176 7648 5.016173 TGCTTTGTAAGACAAGGGCATTAT 58.984 37.500 13.93 0.00 40.66 1.28
4182 7654 3.578688 GCATTGCTTTGTAAGACAAGGG 58.421 45.455 0.16 0.00 39.53 3.95
4183 7655 3.005684 TGGCATTGCTTTGTAAGACAAGG 59.994 43.478 8.82 0.00 39.53 3.61
4193 7665 3.816523 ACTTTTTGGATGGCATTGCTTTG 59.183 39.130 8.82 0.00 0.00 2.77
4199 7671 3.367292 CGTAGCACTTTTTGGATGGCATT 60.367 43.478 0.00 0.00 0.00 3.56
4200 7672 2.164219 CGTAGCACTTTTTGGATGGCAT 59.836 45.455 0.00 0.00 0.00 4.40
4203 7675 3.074412 AGACGTAGCACTTTTTGGATGG 58.926 45.455 0.00 0.00 0.00 3.51
4214 7686 3.936902 TTGTTGTTGAAGACGTAGCAC 57.063 42.857 0.00 0.00 0.00 4.40
4220 7692 4.734854 CCAGTTCATTTGTTGTTGAAGACG 59.265 41.667 0.00 0.00 32.79 4.18
4243 7715 6.030228 GGGAGAACGATGTTTCAATCAAATC 58.970 40.000 0.00 0.00 0.00 2.17
4244 7716 5.391950 CGGGAGAACGATGTTTCAATCAAAT 60.392 40.000 0.00 0.00 35.47 2.32
4245 7717 4.083537 CGGGAGAACGATGTTTCAATCAAA 60.084 41.667 0.00 0.00 35.47 2.69
4246 7718 3.435327 CGGGAGAACGATGTTTCAATCAA 59.565 43.478 0.00 0.00 35.47 2.57
4247 7719 3.000041 CGGGAGAACGATGTTTCAATCA 59.000 45.455 0.00 0.00 35.47 2.57
4248 7720 3.259064 TCGGGAGAACGATGTTTCAATC 58.741 45.455 0.00 0.00 38.06 2.67
4249 7721 3.262420 CTCGGGAGAACGATGTTTCAAT 58.738 45.455 0.00 0.00 42.62 2.57
4250 7722 2.036733 ACTCGGGAGAACGATGTTTCAA 59.963 45.455 2.08 0.00 42.62 2.69
4251 7723 1.616865 ACTCGGGAGAACGATGTTTCA 59.383 47.619 2.08 0.00 42.62 2.69
4252 7724 2.260481 GACTCGGGAGAACGATGTTTC 58.740 52.381 2.08 0.00 42.62 2.78
4253 7725 1.402456 CGACTCGGGAGAACGATGTTT 60.402 52.381 2.08 0.00 42.62 2.83
4254 7726 0.170561 CGACTCGGGAGAACGATGTT 59.829 55.000 2.08 0.00 42.62 2.71
4255 7727 1.801332 CGACTCGGGAGAACGATGT 59.199 57.895 2.08 0.00 42.62 3.06
4256 7728 1.586564 GCGACTCGGGAGAACGATG 60.587 63.158 17.92 0.00 42.62 3.84
4257 7729 2.772691 GGCGACTCGGGAGAACGAT 61.773 63.158 17.92 0.00 42.62 3.73
4258 7730 3.437795 GGCGACTCGGGAGAACGA 61.438 66.667 17.92 0.00 39.73 3.85
4259 7731 4.493747 GGGCGACTCGGGAGAACG 62.494 72.222 2.08 8.77 39.18 3.95
4260 7732 4.493747 CGGGCGACTCGGGAGAAC 62.494 72.222 2.08 0.00 39.18 3.01
4273 7745 4.570874 GAAGATGGGAGGGCGGGC 62.571 72.222 0.00 0.00 0.00 6.13
4274 7746 3.878667 GGAAGATGGGAGGGCGGG 61.879 72.222 0.00 0.00 0.00 6.13
4275 7747 3.878667 GGGAAGATGGGAGGGCGG 61.879 72.222 0.00 0.00 0.00 6.13
4276 7748 2.770048 AGGGAAGATGGGAGGGCG 60.770 66.667 0.00 0.00 0.00 6.13
4277 7749 2.456443 GGAGGGAAGATGGGAGGGC 61.456 68.421 0.00 0.00 0.00 5.19
4278 7750 1.059006 CAGGAGGGAAGATGGGAGGG 61.059 65.000 0.00 0.00 0.00 4.30
4279 7751 0.030705 TCAGGAGGGAAGATGGGAGG 60.031 60.000 0.00 0.00 0.00 4.30
4280 7752 1.343884 ACTCAGGAGGGAAGATGGGAG 60.344 57.143 0.83 0.00 0.00 4.30
4281 7753 0.719015 ACTCAGGAGGGAAGATGGGA 59.281 55.000 0.83 0.00 0.00 4.37
4282 7754 1.127343 GACTCAGGAGGGAAGATGGG 58.873 60.000 0.83 0.00 0.00 4.00
4283 7755 1.484240 GTGACTCAGGAGGGAAGATGG 59.516 57.143 0.83 0.00 0.00 3.51
4284 7756 1.484240 GGTGACTCAGGAGGGAAGATG 59.516 57.143 0.83 0.00 0.00 2.90
4285 7757 1.623834 GGGTGACTCAGGAGGGAAGAT 60.624 57.143 0.83 0.00 0.00 2.40
4286 7758 0.252284 GGGTGACTCAGGAGGGAAGA 60.252 60.000 0.83 0.00 0.00 2.87
4287 7759 1.268283 GGGGTGACTCAGGAGGGAAG 61.268 65.000 0.83 0.00 0.00 3.46
4288 7760 1.229529 GGGGTGACTCAGGAGGGAA 60.230 63.158 0.83 0.00 0.00 3.97
4289 7761 2.450243 GGGGTGACTCAGGAGGGA 59.550 66.667 0.83 0.00 0.00 4.20
4290 7762 2.689034 GGGGGTGACTCAGGAGGG 60.689 72.222 0.83 0.00 0.00 4.30
4345 7817 4.400251 AGGAGTGGGGGAGGACCG 62.400 72.222 0.00 0.00 41.60 4.79
4346 7818 2.365768 GAGGAGTGGGGGAGGACC 60.366 72.222 0.00 0.00 39.11 4.46
4347 7819 2.365768 GGAGGAGTGGGGGAGGAC 60.366 72.222 0.00 0.00 0.00 3.85
4348 7820 2.540910 AGGAGGAGTGGGGGAGGA 60.541 66.667 0.00 0.00 0.00 3.71
4349 7821 2.041405 GAGGAGGAGTGGGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
4350 7822 2.041405 GGAGGAGGAGTGGGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
4351 7823 2.540910 AGGAGGAGGAGTGGGGGA 60.541 66.667 0.00 0.00 0.00 4.81
4352 7824 2.041405 GAGGAGGAGGAGTGGGGG 60.041 72.222 0.00 0.00 0.00 5.40
4353 7825 2.041405 GGAGGAGGAGGAGTGGGG 60.041 72.222 0.00 0.00 0.00 4.96
4354 7826 1.075600 GAGGAGGAGGAGGAGTGGG 60.076 68.421 0.00 0.00 0.00 4.61
4355 7827 1.075600 GGAGGAGGAGGAGGAGTGG 60.076 68.421 0.00 0.00 0.00 4.00
4356 7828 1.075600 GGGAGGAGGAGGAGGAGTG 60.076 68.421 0.00 0.00 0.00 3.51
4357 7829 1.230819 AGGGAGGAGGAGGAGGAGT 60.231 63.158 0.00 0.00 0.00 3.85
4358 7830 1.541672 GAGGGAGGAGGAGGAGGAG 59.458 68.421 0.00 0.00 0.00 3.69
4359 7831 2.387772 CGAGGGAGGAGGAGGAGGA 61.388 68.421 0.00 0.00 0.00 3.71
4360 7832 2.197324 CGAGGGAGGAGGAGGAGG 59.803 72.222 0.00 0.00 0.00 4.30
4361 7833 2.520741 GCGAGGGAGGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
4362 7834 3.024356 AGCGAGGGAGGAGGAGGA 61.024 66.667 0.00 0.00 0.00 3.71
4363 7835 2.837291 CAGCGAGGGAGGAGGAGG 60.837 72.222 0.00 0.00 0.00 4.30
4364 7836 3.535962 GCAGCGAGGGAGGAGGAG 61.536 72.222 0.00 0.00 0.00 3.69
4367 7839 4.154347 GTGGCAGCGAGGGAGGAG 62.154 72.222 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.