Multiple sequence alignment - TraesCS6A01G154600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G154600 chr6A 100.000 4209 0 0 1 4209 143379931 143375723 0.000000e+00 7773.0
1 TraesCS6A01G154600 chr6A 90.074 272 26 1 195 465 608568500 608568771 6.700000e-93 351.0
2 TraesCS6A01G154600 chr6B 93.449 2366 118 15 1858 4209 204334639 204332297 0.000000e+00 3476.0
3 TraesCS6A01G154600 chr6B 86.566 1258 53 35 568 1773 204335950 204334757 0.000000e+00 1280.0
4 TraesCS6A01G154600 chr6D 94.304 1984 88 13 2232 4209 115021427 115019463 0.000000e+00 3014.0
5 TraesCS6A01G154600 chr6D 87.601 1242 52 38 568 1773 115023154 115021979 0.000000e+00 1347.0
6 TraesCS6A01G154600 chr6D 93.521 355 20 3 1782 2135 115021825 115021473 3.730000e-145 525.0
7 TraesCS6A01G154600 chr4A 91.882 271 22 0 195 465 458523617 458523347 3.070000e-101 379.0
8 TraesCS6A01G154600 chr4A 91.882 271 21 1 195 465 458239631 458239362 1.100000e-100 377.0
9 TraesCS6A01G154600 chr4A 98.969 194 2 0 1 194 547771326 547771519 8.660000e-92 348.0
10 TraesCS6A01G154600 chr7A 90.775 271 24 1 195 465 716447652 716447921 1.110000e-95 361.0
11 TraesCS6A01G154600 chr7A 98.969 194 2 0 1 194 109337818 109338011 8.660000e-92 348.0
12 TraesCS6A01G154600 chr7A 98.969 194 2 0 1 194 249227260 249227067 8.660000e-92 348.0
13 TraesCS6A01G154600 chr7A 98.969 194 2 0 1 194 427256772 427256579 8.660000e-92 348.0
14 TraesCS6A01G154600 chr7A 98.969 194 2 0 1 194 430345506 430345699 8.660000e-92 348.0
15 TraesCS6A01G154600 chr7A 89.011 273 29 1 195 466 20222635 20222363 1.870000e-88 337.0
16 TraesCS6A01G154600 chr7A 92.000 50 4 0 1049 1098 678971049 678971000 2.100000e-08 71.3
17 TraesCS6A01G154600 chr2A 90.775 271 24 1 195 465 737307159 737307428 1.110000e-95 361.0
18 TraesCS6A01G154600 chr2A 89.630 270 24 3 192 461 204215741 204216006 1.450000e-89 340.0
19 TraesCS6A01G154600 chr1A 90.288 278 20 1 195 465 580559025 580558748 1.440000e-94 357.0
20 TraesCS6A01G154600 chr1A 98.969 194 2 0 1 194 267070333 267070526 8.660000e-92 348.0
21 TraesCS6A01G154600 chr1A 89.338 272 29 0 195 466 95044011 95044282 4.030000e-90 342.0
22 TraesCS6A01G154600 chr3A 99.485 194 1 0 1 194 44743062 44742869 1.860000e-93 353.0
23 TraesCS6A01G154600 chr3A 98.000 200 2 2 1 199 396755903 396756101 3.120000e-91 346.0
24 TraesCS6A01G154600 chr5A 98.974 195 1 1 1 194 445397367 445397561 8.660000e-92 348.0
25 TraesCS6A01G154600 chr7D 91.837 49 4 0 1050 1098 587120741 587120693 7.550000e-08 69.4
26 TraesCS6A01G154600 chr7B 93.333 45 3 0 1054 1098 658221333 658221289 2.720000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G154600 chr6A 143375723 143379931 4208 True 7773.000000 7773 100.000000 1 4209 1 chr6A.!!$R1 4208
1 TraesCS6A01G154600 chr6B 204332297 204335950 3653 True 2378.000000 3476 90.007500 568 4209 2 chr6B.!!$R1 3641
2 TraesCS6A01G154600 chr6D 115019463 115023154 3691 True 1628.666667 3014 91.808667 568 4209 3 chr6D.!!$R1 3641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 466 0.036765 ACGCGGCTGGAAATGTTCTA 60.037 50.0 12.47 0.0 0.00 2.10 F
487 488 0.103937 GTGAGGCGAGGAATGAGGAG 59.896 60.0 0.00 0.0 0.00 3.69 F
649 654 0.104304 ACGTCACTTCCTCTTTGCGT 59.896 50.0 0.00 0.0 0.00 5.24 F
2181 2395 0.110823 GTGCTGTTGCGTCTAAACCG 60.111 55.0 0.00 0.0 43.34 4.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1493 1557 0.039617 TGTTAAGCGTGCATGTTGCC 60.040 50.0 7.93 0.0 44.23 4.52 R
2211 2426 0.109153 AGCATGAGCAAGACACACCA 59.891 50.0 0.00 0.0 45.49 4.17 R
2212 2427 0.801251 GAGCATGAGCAAGACACACC 59.199 55.0 0.00 0.0 45.49 4.16 R
4113 4347 0.100682 CTCATCCGAGGGTACGTGTG 59.899 60.0 0.00 0.0 35.44 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 8.692110 TTTGTTTCATATATCTTGCTTGCTTG 57.308 30.769 0.00 0.00 0.00 4.01
44 45 7.395190 TGTTTCATATATCTTGCTTGCTTGT 57.605 32.000 0.00 0.00 0.00 3.16
45 46 7.252708 TGTTTCATATATCTTGCTTGCTTGTG 58.747 34.615 0.00 0.00 0.00 3.33
46 47 7.094248 TGTTTCATATATCTTGCTTGCTTGTGT 60.094 33.333 0.00 0.00 0.00 3.72
47 48 7.395190 TTCATATATCTTGCTTGCTTGTGTT 57.605 32.000 0.00 0.00 0.00 3.32
48 49 7.395190 TCATATATCTTGCTTGCTTGTGTTT 57.605 32.000 0.00 0.00 0.00 2.83
49 50 7.475015 TCATATATCTTGCTTGCTTGTGTTTC 58.525 34.615 0.00 0.00 0.00 2.78
50 51 5.972107 ATATCTTGCTTGCTTGTGTTTCT 57.028 34.783 0.00 0.00 0.00 2.52
51 52 8.615211 CATATATCTTGCTTGCTTGTGTTTCTA 58.385 33.333 0.00 0.00 0.00 2.10
52 53 5.972107 ATCTTGCTTGCTTGTGTTTCTAT 57.028 34.783 0.00 0.00 0.00 1.98
53 54 5.772825 TCTTGCTTGCTTGTGTTTCTATT 57.227 34.783 0.00 0.00 0.00 1.73
54 55 5.762045 TCTTGCTTGCTTGTGTTTCTATTC 58.238 37.500 0.00 0.00 0.00 1.75
55 56 4.145876 TGCTTGCTTGTGTTTCTATTCG 57.854 40.909 0.00 0.00 0.00 3.34
56 57 3.563808 TGCTTGCTTGTGTTTCTATTCGT 59.436 39.130 0.00 0.00 0.00 3.85
57 58 3.908382 GCTTGCTTGTGTTTCTATTCGTG 59.092 43.478 0.00 0.00 0.00 4.35
58 59 4.554723 GCTTGCTTGTGTTTCTATTCGTGT 60.555 41.667 0.00 0.00 0.00 4.49
59 60 5.493133 TTGCTTGTGTTTCTATTCGTGTT 57.507 34.783 0.00 0.00 0.00 3.32
60 61 4.843147 TGCTTGTGTTTCTATTCGTGTTG 58.157 39.130 0.00 0.00 0.00 3.33
61 62 3.664025 GCTTGTGTTTCTATTCGTGTTGC 59.336 43.478 0.00 0.00 0.00 4.17
62 63 4.788201 GCTTGTGTTTCTATTCGTGTTGCA 60.788 41.667 0.00 0.00 0.00 4.08
63 64 5.431420 TTGTGTTTCTATTCGTGTTGCAT 57.569 34.783 0.00 0.00 0.00 3.96
64 65 5.029650 TGTGTTTCTATTCGTGTTGCATC 57.970 39.130 0.00 0.00 0.00 3.91
65 66 4.513318 TGTGTTTCTATTCGTGTTGCATCA 59.487 37.500 0.00 0.00 0.00 3.07
66 67 5.181056 TGTGTTTCTATTCGTGTTGCATCAT 59.819 36.000 0.00 0.00 0.00 2.45
67 68 6.370166 TGTGTTTCTATTCGTGTTGCATCATA 59.630 34.615 0.00 0.00 0.00 2.15
68 69 7.065683 TGTGTTTCTATTCGTGTTGCATCATAT 59.934 33.333 0.00 0.00 0.00 1.78
69 70 8.547894 GTGTTTCTATTCGTGTTGCATCATATA 58.452 33.333 0.00 0.20 0.00 0.86
70 71 8.764287 TGTTTCTATTCGTGTTGCATCATATAG 58.236 33.333 0.00 8.78 0.00 1.31
71 72 7.889589 TTCTATTCGTGTTGCATCATATAGG 57.110 36.000 16.33 0.00 0.00 2.57
72 73 6.993079 TCTATTCGTGTTGCATCATATAGGT 58.007 36.000 16.33 2.47 0.00 3.08
73 74 7.441836 TCTATTCGTGTTGCATCATATAGGTT 58.558 34.615 16.33 0.58 0.00 3.50
74 75 5.733226 TTCGTGTTGCATCATATAGGTTG 57.267 39.130 0.00 0.00 0.00 3.77
75 76 3.559655 TCGTGTTGCATCATATAGGTTGC 59.440 43.478 12.38 12.38 35.67 4.17
76 77 3.561310 CGTGTTGCATCATATAGGTTGCT 59.439 43.478 18.26 0.00 36.10 3.91
77 78 4.319046 CGTGTTGCATCATATAGGTTGCTC 60.319 45.833 18.26 12.75 36.10 4.26
78 79 4.576053 GTGTTGCATCATATAGGTTGCTCA 59.424 41.667 18.26 14.57 36.10 4.26
79 80 5.240183 GTGTTGCATCATATAGGTTGCTCAT 59.760 40.000 18.26 0.00 36.10 2.90
80 81 5.471116 TGTTGCATCATATAGGTTGCTCATC 59.529 40.000 18.26 8.81 36.10 2.92
81 82 5.494390 TGCATCATATAGGTTGCTCATCT 57.506 39.130 18.26 0.00 36.10 2.90
82 83 6.610075 TGCATCATATAGGTTGCTCATCTA 57.390 37.500 18.26 0.00 36.10 1.98
83 84 6.637657 TGCATCATATAGGTTGCTCATCTAG 58.362 40.000 18.26 0.00 36.10 2.43
84 85 6.212187 TGCATCATATAGGTTGCTCATCTAGT 59.788 38.462 18.26 0.00 36.10 2.57
85 86 7.102346 GCATCATATAGGTTGCTCATCTAGTT 58.898 38.462 12.08 0.00 32.41 2.24
86 87 7.064371 GCATCATATAGGTTGCTCATCTAGTTG 59.936 40.741 12.08 0.00 32.41 3.16
87 88 6.459066 TCATATAGGTTGCTCATCTAGTTGC 58.541 40.000 0.00 0.00 0.00 4.17
88 89 4.760530 ATAGGTTGCTCATCTAGTTGCA 57.239 40.909 0.00 0.00 0.00 4.08
89 90 3.641434 AGGTTGCTCATCTAGTTGCAT 57.359 42.857 0.00 0.00 35.27 3.96
90 91 4.760530 AGGTTGCTCATCTAGTTGCATA 57.239 40.909 0.00 0.00 35.27 3.14
91 92 5.301835 AGGTTGCTCATCTAGTTGCATAT 57.698 39.130 0.00 0.00 35.27 1.78
92 93 5.303971 AGGTTGCTCATCTAGTTGCATATC 58.696 41.667 0.00 0.00 35.27 1.63
93 94 5.071519 AGGTTGCTCATCTAGTTGCATATCT 59.928 40.000 0.00 0.00 35.27 1.98
94 95 6.268617 AGGTTGCTCATCTAGTTGCATATCTA 59.731 38.462 0.00 0.00 35.27 1.98
95 96 6.589523 GGTTGCTCATCTAGTTGCATATCTAG 59.410 42.308 12.11 12.11 35.27 2.43
96 97 7.374272 GTTGCTCATCTAGTTGCATATCTAGA 58.626 38.462 18.97 18.97 44.07 2.43
97 98 6.918626 TGCTCATCTAGTTGCATATCTAGAC 58.081 40.000 19.03 11.23 43.19 2.59
98 99 6.491403 TGCTCATCTAGTTGCATATCTAGACA 59.509 38.462 19.03 12.87 43.19 3.41
99 100 7.014615 TGCTCATCTAGTTGCATATCTAGACAA 59.985 37.037 19.03 12.46 43.19 3.18
100 101 7.328249 GCTCATCTAGTTGCATATCTAGACAAC 59.672 40.741 19.03 13.43 43.19 3.32
101 102 7.661968 TCATCTAGTTGCATATCTAGACAACC 58.338 38.462 19.03 3.97 43.19 3.77
102 103 7.507277 TCATCTAGTTGCATATCTAGACAACCT 59.493 37.037 19.03 9.28 43.19 3.50
103 104 8.797438 CATCTAGTTGCATATCTAGACAACCTA 58.203 37.037 19.03 9.74 43.19 3.08
104 105 8.167605 TCTAGTTGCATATCTAGACAACCTAC 57.832 38.462 16.29 5.11 42.61 3.18
105 106 7.999545 TCTAGTTGCATATCTAGACAACCTACT 59.000 37.037 16.29 10.57 42.61 2.57
106 107 7.425224 AGTTGCATATCTAGACAACCTACTT 57.575 36.000 16.29 0.58 42.61 2.24
107 108 7.852263 AGTTGCATATCTAGACAACCTACTTT 58.148 34.615 16.29 0.03 42.61 2.66
108 109 7.766278 AGTTGCATATCTAGACAACCTACTTTG 59.234 37.037 16.29 0.00 42.61 2.77
109 110 7.418337 TGCATATCTAGACAACCTACTTTGA 57.582 36.000 0.00 0.00 0.00 2.69
110 111 8.023021 TGCATATCTAGACAACCTACTTTGAT 57.977 34.615 0.00 0.00 0.00 2.57
111 112 7.928167 TGCATATCTAGACAACCTACTTTGATG 59.072 37.037 0.00 0.00 0.00 3.07
112 113 7.095439 GCATATCTAGACAACCTACTTTGATGC 60.095 40.741 0.00 0.00 0.00 3.91
113 114 5.738619 TCTAGACAACCTACTTTGATGCA 57.261 39.130 0.00 0.00 0.00 3.96
114 115 6.109156 TCTAGACAACCTACTTTGATGCAA 57.891 37.500 0.00 0.00 0.00 4.08
115 116 6.530120 TCTAGACAACCTACTTTGATGCAAA 58.470 36.000 0.00 0.00 0.00 3.68
137 138 9.158364 GCAAAGTTTAAATTGCTAAAGAAAAGC 57.842 29.630 15.94 0.00 46.42 3.51
155 156 8.365399 AGAAAAGCTAAAAATTGTTAGTTGCC 57.635 30.769 15.37 4.63 34.20 4.52
156 157 8.204160 AGAAAAGCTAAAAATTGTTAGTTGCCT 58.796 29.630 15.37 6.43 34.20 4.75
157 158 9.471084 GAAAAGCTAAAAATTGTTAGTTGCCTA 57.529 29.630 15.37 0.00 34.20 3.93
158 159 9.996554 AAAAGCTAAAAATTGTTAGTTGCCTAT 57.003 25.926 15.37 0.00 34.20 2.57
159 160 9.996554 AAAGCTAAAAATTGTTAGTTGCCTATT 57.003 25.926 15.37 0.13 34.20 1.73
160 161 9.639601 AAGCTAAAAATTGTTAGTTGCCTATTC 57.360 29.630 15.37 0.00 34.20 1.75
161 162 8.802267 AGCTAAAAATTGTTAGTTGCCTATTCA 58.198 29.630 15.37 0.00 34.20 2.57
162 163 8.860128 GCTAAAAATTGTTAGTTGCCTATTCAC 58.140 33.333 15.37 0.00 34.20 3.18
163 164 9.353999 CTAAAAATTGTTAGTTGCCTATTCACC 57.646 33.333 7.18 0.00 0.00 4.02
164 165 5.914898 AATTGTTAGTTGCCTATTCACCC 57.085 39.130 0.00 0.00 0.00 4.61
165 166 3.359695 TGTTAGTTGCCTATTCACCCC 57.640 47.619 0.00 0.00 0.00 4.95
166 167 2.025699 TGTTAGTTGCCTATTCACCCCC 60.026 50.000 0.00 0.00 0.00 5.40
184 185 2.563179 CCCCCTCTAGTCAACCATATCG 59.437 54.545 0.00 0.00 0.00 2.92
185 186 3.497332 CCCCTCTAGTCAACCATATCGA 58.503 50.000 0.00 0.00 0.00 3.59
186 187 4.090090 CCCCTCTAGTCAACCATATCGAT 58.910 47.826 2.16 2.16 0.00 3.59
187 188 4.158764 CCCCTCTAGTCAACCATATCGATC 59.841 50.000 0.00 0.00 0.00 3.69
188 189 4.158764 CCCTCTAGTCAACCATATCGATCC 59.841 50.000 0.00 0.00 0.00 3.36
189 190 5.013547 CCTCTAGTCAACCATATCGATCCT 58.986 45.833 0.00 0.00 0.00 3.24
190 191 5.478679 CCTCTAGTCAACCATATCGATCCTT 59.521 44.000 0.00 0.00 0.00 3.36
191 192 6.015010 CCTCTAGTCAACCATATCGATCCTTT 60.015 42.308 0.00 0.00 0.00 3.11
192 193 6.982852 TCTAGTCAACCATATCGATCCTTTC 58.017 40.000 0.00 0.00 0.00 2.62
193 194 5.614324 AGTCAACCATATCGATCCTTTCA 57.386 39.130 0.00 0.00 0.00 2.69
194 195 5.605534 AGTCAACCATATCGATCCTTTCAG 58.394 41.667 0.00 0.00 0.00 3.02
195 196 4.212214 GTCAACCATATCGATCCTTTCAGC 59.788 45.833 0.00 0.00 0.00 4.26
196 197 4.129380 CAACCATATCGATCCTTTCAGCA 58.871 43.478 0.00 0.00 0.00 4.41
197 198 4.630644 ACCATATCGATCCTTTCAGCAT 57.369 40.909 0.00 0.00 0.00 3.79
198 199 4.978099 ACCATATCGATCCTTTCAGCATT 58.022 39.130 0.00 0.00 0.00 3.56
199 200 4.758674 ACCATATCGATCCTTTCAGCATTG 59.241 41.667 0.00 0.00 0.00 2.82
200 201 4.999311 CCATATCGATCCTTTCAGCATTGA 59.001 41.667 0.00 0.00 0.00 2.57
201 202 5.646793 CCATATCGATCCTTTCAGCATTGAT 59.353 40.000 0.00 0.00 32.27 2.57
202 203 6.150641 CCATATCGATCCTTTCAGCATTGATT 59.849 38.462 0.00 0.00 32.27 2.57
203 204 5.686159 ATCGATCCTTTCAGCATTGATTC 57.314 39.130 0.00 0.00 32.27 2.52
204 205 3.879295 TCGATCCTTTCAGCATTGATTCC 59.121 43.478 0.00 0.00 32.27 3.01
205 206 3.004106 CGATCCTTTCAGCATTGATTCCC 59.996 47.826 0.00 0.00 32.27 3.97
206 207 2.368439 TCCTTTCAGCATTGATTCCCG 58.632 47.619 0.00 0.00 32.27 5.14
207 208 1.202336 CCTTTCAGCATTGATTCCCGC 60.202 52.381 0.00 0.00 32.27 6.13
208 209 0.451383 TTTCAGCATTGATTCCCGCG 59.549 50.000 0.00 0.00 32.27 6.46
209 210 1.375853 TTCAGCATTGATTCCCGCGG 61.376 55.000 21.04 21.04 32.27 6.46
210 211 2.516930 AGCATTGATTCCCGCGGG 60.517 61.111 39.13 39.13 0.00 6.13
211 212 2.515991 GCATTGATTCCCGCGGGA 60.516 61.111 42.66 42.66 43.52 5.14
225 226 3.486263 GGGAAACGAGGCGATGTG 58.514 61.111 0.00 0.00 0.00 3.21
226 227 2.106683 GGGAAACGAGGCGATGTGG 61.107 63.158 0.00 0.00 0.00 4.17
227 228 1.079405 GGAAACGAGGCGATGTGGA 60.079 57.895 0.00 0.00 0.00 4.02
228 229 1.359459 GGAAACGAGGCGATGTGGAC 61.359 60.000 0.00 0.00 0.00 4.02
229 230 1.683790 GAAACGAGGCGATGTGGACG 61.684 60.000 0.00 0.00 0.00 4.79
230 231 2.149803 AAACGAGGCGATGTGGACGA 62.150 55.000 0.00 0.00 0.00 4.20
231 232 2.579787 CGAGGCGATGTGGACGAC 60.580 66.667 0.00 0.00 39.24 4.34
232 233 2.579787 GAGGCGATGTGGACGACG 60.580 66.667 0.00 0.00 44.04 5.12
233 234 3.047718 GAGGCGATGTGGACGACGA 62.048 63.158 0.00 0.00 44.04 4.20
234 235 2.126228 GGCGATGTGGACGACGAA 60.126 61.111 0.00 0.00 0.00 3.85
235 236 2.158959 GGCGATGTGGACGACGAAG 61.159 63.158 0.00 0.00 0.00 3.79
236 237 2.789203 GCGATGTGGACGACGAAGC 61.789 63.158 0.00 0.00 0.00 3.86
237 238 2.497092 CGATGTGGACGACGAAGCG 61.497 63.158 0.00 0.00 37.29 4.68
238 239 2.126071 ATGTGGACGACGAAGCGG 60.126 61.111 0.00 0.00 35.12 5.52
263 264 3.402681 CTGACAGGGCGGGTCCAT 61.403 66.667 0.00 0.00 36.21 3.41
264 265 3.391665 CTGACAGGGCGGGTCCATC 62.392 68.421 0.00 0.00 36.21 3.51
265 266 3.399181 GACAGGGCGGGTCCATCA 61.399 66.667 0.00 0.00 36.21 3.07
266 267 3.682292 GACAGGGCGGGTCCATCAC 62.682 68.421 0.00 0.00 36.21 3.06
267 268 3.716195 CAGGGCGGGTCCATCACA 61.716 66.667 0.00 0.00 36.21 3.58
268 269 3.402681 AGGGCGGGTCCATCACAG 61.403 66.667 0.00 0.00 36.21 3.66
269 270 3.717294 GGGCGGGTCCATCACAGT 61.717 66.667 0.00 0.00 36.21 3.55
270 271 2.351276 GGCGGGTCCATCACAGTT 59.649 61.111 0.00 0.00 34.01 3.16
271 272 1.745489 GGCGGGTCCATCACAGTTC 60.745 63.158 0.00 0.00 34.01 3.01
272 273 2.100631 GCGGGTCCATCACAGTTCG 61.101 63.158 0.00 0.00 0.00 3.95
273 274 2.100631 CGGGTCCATCACAGTTCGC 61.101 63.158 0.00 0.00 0.00 4.70
274 275 2.100631 GGGTCCATCACAGTTCGCG 61.101 63.158 0.00 0.00 0.00 5.87
275 276 2.740714 GGTCCATCACAGTTCGCGC 61.741 63.158 0.00 0.00 0.00 6.86
276 277 2.434185 TCCATCACAGTTCGCGCC 60.434 61.111 0.00 0.00 0.00 6.53
277 278 2.741985 CCATCACAGTTCGCGCCA 60.742 61.111 0.00 0.00 0.00 5.69
278 279 2.324330 CCATCACAGTTCGCGCCAA 61.324 57.895 0.00 0.00 0.00 4.52
279 280 1.573932 CATCACAGTTCGCGCCAAA 59.426 52.632 0.00 0.00 0.00 3.28
280 281 0.040514 CATCACAGTTCGCGCCAAAA 60.041 50.000 0.00 0.00 0.00 2.44
281 282 0.665835 ATCACAGTTCGCGCCAAAAA 59.334 45.000 0.00 0.00 0.00 1.94
282 283 0.248296 TCACAGTTCGCGCCAAAAAC 60.248 50.000 0.00 0.00 0.00 2.43
283 284 1.298041 ACAGTTCGCGCCAAAAACG 60.298 52.632 0.00 0.00 0.00 3.60
284 285 2.008697 CAGTTCGCGCCAAAAACGG 61.009 57.895 0.00 0.00 0.00 4.44
285 286 2.025013 GTTCGCGCCAAAAACGGT 59.975 55.556 0.00 0.00 0.00 4.83
286 287 2.007114 GTTCGCGCCAAAAACGGTC 61.007 57.895 0.00 0.00 0.00 4.79
287 288 3.183776 TTCGCGCCAAAAACGGTCC 62.184 57.895 0.00 0.00 0.00 4.46
289 290 3.956317 GCGCCAAAAACGGTCCGT 61.956 61.111 12.23 12.23 43.97 4.69
290 291 2.250190 CGCCAAAAACGGTCCGTC 59.750 61.111 19.16 2.64 39.99 4.79
291 292 2.640989 GCCAAAAACGGTCCGTCC 59.359 61.111 19.16 0.00 39.99 4.79
316 317 4.864334 CCAGGCGATCCCCAGCAC 62.864 72.222 0.00 0.00 34.54 4.40
331 332 3.411351 CACGCCGGGTTCGAGTTG 61.411 66.667 2.18 0.00 39.00 3.16
332 333 4.675029 ACGCCGGGTTCGAGTTGG 62.675 66.667 2.18 0.00 39.00 3.77
333 334 4.367023 CGCCGGGTTCGAGTTGGA 62.367 66.667 2.18 0.00 39.00 3.53
334 335 2.267961 GCCGGGTTCGAGTTGGAT 59.732 61.111 2.18 0.00 39.00 3.41
335 336 1.518774 GCCGGGTTCGAGTTGGATA 59.481 57.895 2.18 0.00 39.00 2.59
336 337 0.808847 GCCGGGTTCGAGTTGGATAC 60.809 60.000 2.18 0.00 39.00 2.24
337 338 0.526954 CCGGGTTCGAGTTGGATACG 60.527 60.000 0.00 0.00 39.00 3.06
338 339 1.143969 CGGGTTCGAGTTGGATACGC 61.144 60.000 0.00 0.00 39.00 4.42
339 340 0.808847 GGGTTCGAGTTGGATACGCC 60.809 60.000 0.00 0.00 42.51 5.68
340 341 1.143969 GGTTCGAGTTGGATACGCCG 61.144 60.000 0.00 0.00 40.66 6.46
341 342 1.140161 TTCGAGTTGGATACGCCGG 59.860 57.895 0.00 0.00 40.66 6.13
342 343 2.894240 TTCGAGTTGGATACGCCGGC 62.894 60.000 19.07 19.07 40.66 6.13
343 344 2.960129 GAGTTGGATACGCCGGCG 60.960 66.667 44.88 44.88 46.03 6.46
353 354 2.098298 CGCCGGCGTCAATTTCTG 59.902 61.111 39.71 8.63 34.35 3.02
354 355 2.202479 GCCGGCGTCAATTTCTGC 60.202 61.111 12.58 0.00 0.00 4.26
355 356 2.485122 CCGGCGTCAATTTCTGCC 59.515 61.111 6.01 2.22 44.09 4.85
356 357 2.485122 CGGCGTCAATTTCTGCCC 59.515 61.111 0.00 0.00 44.71 5.36
357 358 2.331893 CGGCGTCAATTTCTGCCCA 61.332 57.895 0.00 0.00 44.71 5.36
358 359 1.861542 CGGCGTCAATTTCTGCCCAA 61.862 55.000 0.00 0.00 44.71 4.12
359 360 0.532115 GGCGTCAATTTCTGCCCAAT 59.468 50.000 1.01 0.00 41.70 3.16
360 361 1.469767 GGCGTCAATTTCTGCCCAATC 60.470 52.381 1.01 0.00 41.70 2.67
361 362 1.469767 GCGTCAATTTCTGCCCAATCC 60.470 52.381 0.00 0.00 0.00 3.01
362 363 1.202177 CGTCAATTTCTGCCCAATCCG 60.202 52.381 0.00 0.00 0.00 4.18
363 364 1.134946 GTCAATTTCTGCCCAATCCGG 59.865 52.381 0.00 0.00 0.00 5.14
370 371 3.065567 GCCCAATCCGGCGGAAAA 61.066 61.111 34.58 11.19 39.64 2.29
371 372 2.882132 CCCAATCCGGCGGAAAAC 59.118 61.111 34.58 0.00 34.34 2.43
378 379 2.789249 CGGCGGAAAACGGATTCC 59.211 61.111 10.53 10.53 44.50 3.01
379 380 1.743995 CGGCGGAAAACGGATTCCT 60.744 57.895 16.46 0.00 45.54 3.36
380 381 1.800681 GGCGGAAAACGGATTCCTG 59.199 57.895 16.46 11.94 45.54 3.86
381 382 0.675522 GGCGGAAAACGGATTCCTGA 60.676 55.000 16.46 0.00 45.54 3.86
382 383 1.161843 GCGGAAAACGGATTCCTGAA 58.838 50.000 16.46 0.00 45.54 3.02
383 384 1.130561 GCGGAAAACGGATTCCTGAAG 59.869 52.381 16.46 5.29 45.54 3.02
384 385 1.737793 CGGAAAACGGATTCCTGAAGG 59.262 52.381 16.46 0.00 45.54 3.46
385 386 1.472878 GGAAAACGGATTCCTGAAGGC 59.527 52.381 12.71 0.00 44.54 4.35
386 387 1.130561 GAAAACGGATTCCTGAAGGCG 59.869 52.381 0.30 0.00 34.44 5.52
387 388 1.305930 AAACGGATTCCTGAAGGCGC 61.306 55.000 0.00 0.00 34.44 6.53
388 389 3.264897 CGGATTCCTGAAGGCGCG 61.265 66.667 0.00 0.00 34.44 6.86
389 390 2.186903 GGATTCCTGAAGGCGCGA 59.813 61.111 12.10 0.00 34.44 5.87
390 391 2.174319 GGATTCCTGAAGGCGCGAC 61.174 63.158 12.10 7.34 34.44 5.19
391 392 1.153549 GATTCCTGAAGGCGCGACT 60.154 57.895 9.84 9.84 34.44 4.18
392 393 1.424493 GATTCCTGAAGGCGCGACTG 61.424 60.000 19.28 1.74 34.44 3.51
393 394 2.859273 ATTCCTGAAGGCGCGACTGG 62.859 60.000 19.28 14.10 34.44 4.00
424 425 3.427670 CACCGGTGCCGAAAAAGT 58.572 55.556 24.02 0.00 42.83 2.66
425 426 1.008995 CACCGGTGCCGAAAAAGTG 60.009 57.895 24.02 7.32 42.83 3.16
426 427 1.452470 ACCGGTGCCGAAAAAGTGT 60.452 52.632 6.12 0.00 42.83 3.55
427 428 1.281656 CCGGTGCCGAAAAAGTGTC 59.718 57.895 12.71 0.00 42.83 3.67
428 429 1.281656 CGGTGCCGAAAAAGTGTCC 59.718 57.895 4.35 0.00 42.83 4.02
429 430 1.164041 CGGTGCCGAAAAAGTGTCCT 61.164 55.000 4.35 0.00 42.83 3.85
430 431 0.310854 GGTGCCGAAAAAGTGTCCTG 59.689 55.000 0.00 0.00 0.00 3.86
431 432 0.310854 GTGCCGAAAAAGTGTCCTGG 59.689 55.000 0.00 0.00 0.00 4.45
432 433 0.821711 TGCCGAAAAAGTGTCCTGGG 60.822 55.000 0.00 0.00 0.00 4.45
433 434 1.524008 GCCGAAAAAGTGTCCTGGGG 61.524 60.000 0.00 0.00 0.00 4.96
434 435 0.179001 CCGAAAAAGTGTCCTGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
435 436 0.951558 CGAAAAAGTGTCCTGGGGTG 59.048 55.000 0.00 0.00 0.00 4.61
436 437 0.673985 GAAAAAGTGTCCTGGGGTGC 59.326 55.000 0.00 0.00 0.00 5.01
437 438 0.759060 AAAAAGTGTCCTGGGGTGCC 60.759 55.000 0.00 0.00 0.00 5.01
438 439 1.655114 AAAAGTGTCCTGGGGTGCCT 61.655 55.000 0.00 0.00 0.00 4.75
439 440 2.357593 AAAGTGTCCTGGGGTGCCTG 62.358 60.000 0.00 0.00 0.00 4.85
440 441 3.570212 GTGTCCTGGGGTGCCTGT 61.570 66.667 0.00 0.00 0.00 4.00
441 442 2.776526 TGTCCTGGGGTGCCTGTT 60.777 61.111 0.00 0.00 0.00 3.16
442 443 2.282462 GTCCTGGGGTGCCTGTTG 60.282 66.667 0.00 0.00 0.00 3.33
443 444 3.579302 TCCTGGGGTGCCTGTTGG 61.579 66.667 0.00 0.00 0.00 3.77
444 445 4.684134 CCTGGGGTGCCTGTTGGG 62.684 72.222 0.00 0.00 38.36 4.12
445 446 4.684134 CTGGGGTGCCTGTTGGGG 62.684 72.222 0.00 0.00 35.12 4.96
459 460 4.796495 GGGGACGCGGCTGGAAAT 62.796 66.667 13.91 0.00 0.00 2.17
460 461 3.508840 GGGACGCGGCTGGAAATG 61.509 66.667 13.91 0.00 0.00 2.32
461 462 2.746277 GGACGCGGCTGGAAATGT 60.746 61.111 13.91 0.00 0.00 2.71
462 463 2.332654 GGACGCGGCTGGAAATGTT 61.333 57.895 13.91 0.00 0.00 2.71
463 464 1.134694 GACGCGGCTGGAAATGTTC 59.865 57.895 12.47 0.00 0.00 3.18
464 465 1.298859 GACGCGGCTGGAAATGTTCT 61.299 55.000 12.47 0.00 0.00 3.01
465 466 0.036765 ACGCGGCTGGAAATGTTCTA 60.037 50.000 12.47 0.00 0.00 2.10
466 467 1.299541 CGCGGCTGGAAATGTTCTAT 58.700 50.000 0.00 0.00 0.00 1.98
467 468 1.670811 CGCGGCTGGAAATGTTCTATT 59.329 47.619 0.00 0.00 0.00 1.73
468 469 2.539547 CGCGGCTGGAAATGTTCTATTG 60.540 50.000 0.00 0.00 0.00 1.90
469 470 2.423538 GCGGCTGGAAATGTTCTATTGT 59.576 45.455 0.00 0.00 0.00 2.71
470 471 3.731867 GCGGCTGGAAATGTTCTATTGTG 60.732 47.826 0.00 0.00 0.00 3.33
471 472 3.689161 CGGCTGGAAATGTTCTATTGTGA 59.311 43.478 0.00 0.00 0.00 3.58
472 473 4.201851 CGGCTGGAAATGTTCTATTGTGAG 60.202 45.833 0.00 0.00 0.00 3.51
473 474 4.096984 GGCTGGAAATGTTCTATTGTGAGG 59.903 45.833 0.00 0.00 0.00 3.86
474 475 4.439289 GCTGGAAATGTTCTATTGTGAGGC 60.439 45.833 0.00 0.00 0.00 4.70
475 476 3.689161 TGGAAATGTTCTATTGTGAGGCG 59.311 43.478 0.00 0.00 0.00 5.52
476 477 3.938963 GGAAATGTTCTATTGTGAGGCGA 59.061 43.478 0.00 0.00 0.00 5.54
477 478 4.034510 GGAAATGTTCTATTGTGAGGCGAG 59.965 45.833 0.00 0.00 0.00 5.03
478 479 2.672961 TGTTCTATTGTGAGGCGAGG 57.327 50.000 0.00 0.00 0.00 4.63
479 480 2.176045 TGTTCTATTGTGAGGCGAGGA 58.824 47.619 0.00 0.00 0.00 3.71
480 481 2.565391 TGTTCTATTGTGAGGCGAGGAA 59.435 45.455 0.00 0.00 0.00 3.36
481 482 3.197766 TGTTCTATTGTGAGGCGAGGAAT 59.802 43.478 0.00 0.00 0.00 3.01
482 483 3.459232 TCTATTGTGAGGCGAGGAATG 57.541 47.619 0.00 0.00 0.00 2.67
483 484 3.031013 TCTATTGTGAGGCGAGGAATGA 58.969 45.455 0.00 0.00 0.00 2.57
484 485 2.322355 ATTGTGAGGCGAGGAATGAG 57.678 50.000 0.00 0.00 0.00 2.90
485 486 0.250234 TTGTGAGGCGAGGAATGAGG 59.750 55.000 0.00 0.00 0.00 3.86
486 487 0.614697 TGTGAGGCGAGGAATGAGGA 60.615 55.000 0.00 0.00 0.00 3.71
487 488 0.103937 GTGAGGCGAGGAATGAGGAG 59.896 60.000 0.00 0.00 0.00 3.69
488 489 0.324738 TGAGGCGAGGAATGAGGAGT 60.325 55.000 0.00 0.00 0.00 3.85
489 490 0.103937 GAGGCGAGGAATGAGGAGTG 59.896 60.000 0.00 0.00 0.00 3.51
490 491 0.324738 AGGCGAGGAATGAGGAGTGA 60.325 55.000 0.00 0.00 0.00 3.41
491 492 0.179097 GGCGAGGAATGAGGAGTGAC 60.179 60.000 0.00 0.00 0.00 3.67
492 493 0.820871 GCGAGGAATGAGGAGTGACT 59.179 55.000 0.00 0.00 0.00 3.41
493 494 2.025155 GCGAGGAATGAGGAGTGACTA 58.975 52.381 0.00 0.00 0.00 2.59
494 495 2.034053 GCGAGGAATGAGGAGTGACTAG 59.966 54.545 0.00 0.00 0.00 2.57
495 496 2.621055 CGAGGAATGAGGAGTGACTAGG 59.379 54.545 0.00 0.00 0.00 3.02
496 497 2.364002 GAGGAATGAGGAGTGACTAGGC 59.636 54.545 0.00 0.00 0.00 3.93
497 498 1.067821 GGAATGAGGAGTGACTAGGCG 59.932 57.143 0.00 0.00 0.00 5.52
498 499 0.461961 AATGAGGAGTGACTAGGCGC 59.538 55.000 0.00 0.00 0.00 6.53
499 500 0.396417 ATGAGGAGTGACTAGGCGCT 60.396 55.000 12.64 12.64 0.00 5.92
500 501 1.315981 TGAGGAGTGACTAGGCGCTG 61.316 60.000 18.54 0.06 0.00 5.18
501 502 1.304547 AGGAGTGACTAGGCGCTGT 60.305 57.895 18.54 0.00 0.00 4.40
502 503 1.139947 GGAGTGACTAGGCGCTGTC 59.860 63.158 18.54 13.97 0.00 3.51
503 504 1.139947 GAGTGACTAGGCGCTGTCC 59.860 63.158 18.54 0.00 32.67 4.02
504 505 2.202623 GTGACTAGGCGCTGTCCG 60.203 66.667 19.74 4.35 40.75 4.79
521 522 4.451150 GCGGACGCATCCCAGACA 62.451 66.667 12.31 0.00 42.83 3.41
522 523 2.501128 CGGACGCATCCCAGACAT 59.499 61.111 0.00 0.00 42.83 3.06
523 524 1.153369 CGGACGCATCCCAGACATT 60.153 57.895 0.00 0.00 42.83 2.71
524 525 1.431488 CGGACGCATCCCAGACATTG 61.431 60.000 0.00 0.00 42.83 2.82
525 526 0.392998 GGACGCATCCCAGACATTGT 60.393 55.000 0.00 0.00 39.39 2.71
526 527 0.729116 GACGCATCCCAGACATTGTG 59.271 55.000 0.00 0.00 0.00 3.33
527 528 0.677731 ACGCATCCCAGACATTGTGG 60.678 55.000 0.00 0.00 34.52 4.17
532 533 4.517663 CCAGACATTGTGGGGCAA 57.482 55.556 0.00 0.00 41.89 4.52
533 534 2.744062 CCAGACATTGTGGGGCAAA 58.256 52.632 0.00 0.00 40.91 3.68
534 535 0.318120 CCAGACATTGTGGGGCAAAC 59.682 55.000 0.00 0.00 40.91 2.93
535 536 1.331214 CAGACATTGTGGGGCAAACT 58.669 50.000 0.00 0.00 40.91 2.66
536 537 1.688197 CAGACATTGTGGGGCAAACTT 59.312 47.619 0.00 0.00 40.91 2.66
537 538 2.102925 CAGACATTGTGGGGCAAACTTT 59.897 45.455 0.00 0.00 40.91 2.66
538 539 2.102925 AGACATTGTGGGGCAAACTTTG 59.897 45.455 0.00 0.00 40.91 2.77
539 540 1.836802 ACATTGTGGGGCAAACTTTGT 59.163 42.857 3.48 0.00 40.91 2.83
540 541 3.034635 ACATTGTGGGGCAAACTTTGTA 58.965 40.909 3.48 0.00 40.91 2.41
541 542 3.452627 ACATTGTGGGGCAAACTTTGTAA 59.547 39.130 3.48 0.00 40.91 2.41
542 543 4.080863 ACATTGTGGGGCAAACTTTGTAAA 60.081 37.500 3.48 0.00 40.91 2.01
543 544 3.810310 TGTGGGGCAAACTTTGTAAAG 57.190 42.857 3.48 2.94 41.73 1.85
558 559 8.034058 ACTTTGTAAAGTCTGATTGTAGATGC 57.966 34.615 4.25 0.00 45.65 3.91
559 560 7.880195 ACTTTGTAAAGTCTGATTGTAGATGCT 59.120 33.333 4.25 0.00 45.65 3.79
560 561 7.834068 TTGTAAAGTCTGATTGTAGATGCTC 57.166 36.000 0.00 0.00 0.00 4.26
561 562 7.175347 TGTAAAGTCTGATTGTAGATGCTCT 57.825 36.000 0.00 0.00 0.00 4.09
562 563 8.293699 TGTAAAGTCTGATTGTAGATGCTCTA 57.706 34.615 0.00 0.00 0.00 2.43
595 596 8.896826 GTTTTTATTTTCTTCGAAGCAGAGAAG 58.103 33.333 20.56 8.25 43.70 2.85
600 601 3.680490 TCTTCGAAGCAGAGAAGAGAGA 58.320 45.455 20.56 0.00 45.33 3.10
601 602 4.075682 TCTTCGAAGCAGAGAAGAGAGAA 58.924 43.478 20.56 0.00 45.33 2.87
643 648 1.957562 CACGGACGTCACTTCCTCT 59.042 57.895 18.91 0.00 0.00 3.69
649 654 0.104304 ACGTCACTTCCTCTTTGCGT 59.896 50.000 0.00 0.00 0.00 5.24
724 740 3.974757 GGATACGGCCGGTCGAGG 61.975 72.222 38.47 6.69 0.00 4.63
744 760 1.926108 GGCAGACCCGTAGATATCCT 58.074 55.000 0.00 0.00 0.00 3.24
752 768 4.073549 ACCCGTAGATATCCTCGAAGAAG 58.926 47.826 15.56 2.59 34.09 2.85
759 775 4.840005 CCTCGAAGAAGGCGCCCC 62.840 72.222 26.15 16.22 34.09 5.80
883 908 2.224314 CGCCGAAAAGAGCTTTTTCTCT 59.776 45.455 21.24 3.31 44.78 3.10
884 909 3.665585 CGCCGAAAAGAGCTTTTTCTCTC 60.666 47.826 21.24 9.73 42.25 3.20
885 910 3.500299 GCCGAAAAGAGCTTTTTCTCTCT 59.500 43.478 21.24 2.73 42.25 3.10
886 911 4.691216 GCCGAAAAGAGCTTTTTCTCTCTA 59.309 41.667 21.24 0.00 42.25 2.43
887 912 5.352846 GCCGAAAAGAGCTTTTTCTCTCTAT 59.647 40.000 21.24 1.59 42.25 1.98
925 950 1.202698 CGGCATCTCCCCTCTAAAAGG 60.203 57.143 0.00 0.00 45.77 3.11
981 1008 2.422231 CCAGACTCCTCCTCCGCAG 61.422 68.421 0.00 0.00 0.00 5.18
985 1012 2.441901 CTCCTCCTCCGCAGCTCT 60.442 66.667 0.00 0.00 0.00 4.09
998 1025 2.980475 GCTCTGCTCAGCTCACCT 59.020 61.111 0.00 0.00 36.38 4.00
1000 1027 1.886253 GCTCTGCTCAGCTCACCTCA 61.886 60.000 0.00 0.00 36.38 3.86
1001 1028 0.173935 CTCTGCTCAGCTCACCTCAG 59.826 60.000 0.00 0.00 0.00 3.35
1002 1029 1.448189 CTGCTCAGCTCACCTCAGC 60.448 63.158 0.00 0.00 39.99 4.26
1011 1038 3.086600 CACCTCAGCTCCCTCCCC 61.087 72.222 0.00 0.00 0.00 4.81
1246 1273 1.591504 GCCCTCGATCGATCTCCTCC 61.592 65.000 19.78 5.34 0.00 4.30
1294 1341 1.218875 TGAAACTGTGGCGCGTACTG 61.219 55.000 8.43 13.73 0.00 2.74
1300 1352 2.584970 TGGCGCGTACTGCATAGC 60.585 61.111 8.43 4.91 46.97 2.97
1317 1369 2.368655 AGCACGGAATTTTTGGATGC 57.631 45.000 0.00 0.00 0.00 3.91
1362 1419 3.923017 TCTGATGATCATACGCGACAT 57.077 42.857 15.93 8.16 0.00 3.06
1372 1429 7.370383 TGATCATACGCGACATATGCATATAT 58.630 34.615 18.70 8.19 31.26 0.86
1408 1465 1.269102 GCATGAGATGGTGCTTGCATC 60.269 52.381 0.00 0.00 38.30 3.91
1471 1535 4.916293 GAGATGCGGGCCATGCGA 62.916 66.667 4.39 0.00 33.29 5.10
1472 1536 4.260609 AGATGCGGGCCATGCGAT 62.261 61.111 4.39 4.53 33.29 4.58
1473 1537 4.034258 GATGCGGGCCATGCGATG 62.034 66.667 4.39 0.00 33.29 3.84
1480 1544 2.280119 GCCATGCGATGCGACCTA 60.280 61.111 0.00 0.00 0.00 3.08
1481 1545 2.313172 GCCATGCGATGCGACCTAG 61.313 63.158 0.00 0.00 0.00 3.02
1482 1546 2.313172 CCATGCGATGCGACCTAGC 61.313 63.158 0.00 0.00 37.71 3.42
1483 1547 2.029666 ATGCGATGCGACCTAGCC 59.970 61.111 0.00 0.00 36.02 3.93
1493 1557 1.740718 GCGACCTAGCCTTTCCTCTTG 60.741 57.143 0.00 0.00 0.00 3.02
1529 1593 6.963805 CGCTTAACATCCTTGAGAAAGAAATC 59.036 38.462 0.00 0.00 0.00 2.17
1530 1594 7.361201 CGCTTAACATCCTTGAGAAAGAAATCA 60.361 37.037 0.00 0.00 0.00 2.57
1531 1595 8.465201 GCTTAACATCCTTGAGAAAGAAATCAT 58.535 33.333 0.00 0.00 0.00 2.45
1715 1783 2.670905 GCCAACACCAAAAGTTGTGTTC 59.329 45.455 7.12 0.00 43.61 3.18
1779 1847 9.725019 TTGTCAAACATCTGAATTCTATGTAGT 57.275 29.630 20.32 12.59 33.59 2.73
1806 2019 8.818057 ACTAGAAGATGCAAACGAATAATACAC 58.182 33.333 0.00 0.00 0.00 2.90
1822 2035 8.413309 AATAATACACCTTTGCTATGCATGAT 57.587 30.769 10.16 0.00 38.76 2.45
1844 2057 3.876274 TGTTCTGATGTAGAGCTCCAC 57.124 47.619 10.93 7.90 37.51 4.02
1905 2119 0.984230 TCCCAACTAAGCAGACCCTG 59.016 55.000 0.00 0.00 34.12 4.45
1914 2128 1.067295 AGCAGACCCTGAATGGAACA 58.933 50.000 0.00 0.00 36.61 3.18
1922 2136 4.082125 ACCCTGAATGGAACAATTCAGAC 58.918 43.478 24.91 0.00 46.58 3.51
1927 2141 5.704515 CTGAATGGAACAATTCAGACTCACT 59.295 40.000 20.90 0.00 46.58 3.41
1933 2147 4.156455 ACAATTCAGACTCACTTGTGGT 57.844 40.909 0.64 0.00 0.00 4.16
2010 2224 4.109766 CGCAGTCGTCAATCTATGGTAAA 58.890 43.478 0.00 0.00 0.00 2.01
2011 2225 4.745125 CGCAGTCGTCAATCTATGGTAAAT 59.255 41.667 0.00 0.00 0.00 1.40
2012 2226 5.332581 CGCAGTCGTCAATCTATGGTAAATG 60.333 44.000 0.00 0.00 0.00 2.32
2013 2227 5.559035 GCAGTCGTCAATCTATGGTAAATGC 60.559 44.000 0.00 0.00 0.00 3.56
2014 2228 5.523552 CAGTCGTCAATCTATGGTAAATGCA 59.476 40.000 0.00 0.00 0.00 3.96
2015 2229 6.203530 CAGTCGTCAATCTATGGTAAATGCAT 59.796 38.462 0.00 0.00 0.00 3.96
2084 2298 8.463930 TTGTGTTTAGAAGAAGAATGGTTCAT 57.536 30.769 0.00 0.00 0.00 2.57
2087 2301 7.327032 GTGTTTAGAAGAAGAATGGTTCATTGC 59.673 37.037 0.00 0.00 33.90 3.56
2181 2395 0.110823 GTGCTGTTGCGTCTAAACCG 60.111 55.000 0.00 0.00 43.34 4.44
2183 2397 1.908066 GCTGTTGCGTCTAAACCGGG 61.908 60.000 6.32 0.00 0.00 5.73
2186 2400 1.071814 TTGCGTCTAAACCGGGCTT 59.928 52.632 6.32 0.47 0.00 4.35
2206 2421 4.994852 GCTTGGTTACAACACATGACTAGA 59.005 41.667 0.00 0.00 32.14 2.43
2207 2422 5.107065 GCTTGGTTACAACACATGACTAGAC 60.107 44.000 0.00 0.00 32.14 2.59
2208 2423 4.552355 TGGTTACAACACATGACTAGACG 58.448 43.478 0.00 0.00 0.00 4.18
2209 2424 4.278919 TGGTTACAACACATGACTAGACGA 59.721 41.667 0.00 0.00 0.00 4.20
2210 2425 4.620184 GGTTACAACACATGACTAGACGAC 59.380 45.833 0.00 0.00 0.00 4.34
2211 2426 5.458891 GTTACAACACATGACTAGACGACT 58.541 41.667 0.00 0.00 0.00 4.18
2212 2427 3.902150 ACAACACATGACTAGACGACTG 58.098 45.455 0.00 0.00 0.00 3.51
2213 2428 3.245797 CAACACATGACTAGACGACTGG 58.754 50.000 0.00 0.00 0.00 4.00
2259 2474 3.294816 TTCTCTATCTATGCAGCAGCG 57.705 47.619 0.00 0.00 46.23 5.18
2289 2504 2.167861 GTCGGCGACCAATCTGAGC 61.168 63.158 28.72 0.00 0.00 4.26
2397 2612 1.931551 CACGAACCCAACAGACGTG 59.068 57.895 0.00 0.00 45.46 4.49
2400 2615 1.292061 CGAACCCAACAGACGTGAAA 58.708 50.000 0.00 0.00 0.00 2.69
2421 2636 3.802948 AGGATGAGACGGTACATCAAC 57.197 47.619 20.95 8.70 32.44 3.18
2424 2639 3.617263 GGATGAGACGGTACATCAACAAC 59.383 47.826 20.95 7.29 32.44 3.32
2427 2642 3.007506 TGAGACGGTACATCAACAACCAT 59.992 43.478 0.00 0.00 32.55 3.55
2430 2645 3.745799 ACGGTACATCAACAACCATGAA 58.254 40.909 0.00 0.00 32.55 2.57
2435 2650 5.047377 GGTACATCAACAACCATGAACCATT 60.047 40.000 0.00 0.00 33.28 3.16
2441 2656 3.711863 ACAACCATGAACCATTATGCCT 58.288 40.909 0.00 0.00 0.00 4.75
2442 2657 4.095946 ACAACCATGAACCATTATGCCTT 58.904 39.130 0.00 0.00 0.00 4.35
2443 2658 4.531732 ACAACCATGAACCATTATGCCTTT 59.468 37.500 0.00 0.00 0.00 3.11
2478 2693 5.300034 TGTGTTCTTCATTCACTGCTCAAAT 59.700 36.000 0.00 0.00 33.82 2.32
2589 2804 0.612174 AGCTGGAGACGCAGGTAAGA 60.612 55.000 0.00 0.00 33.30 2.10
2592 2807 2.287909 GCTGGAGACGCAGGTAAGATAG 60.288 54.545 0.00 0.00 0.00 2.08
2593 2808 2.294791 CTGGAGACGCAGGTAAGATAGG 59.705 54.545 0.00 0.00 0.00 2.57
2597 2812 2.885894 AGACGCAGGTAAGATAGGCTAC 59.114 50.000 0.00 0.00 0.00 3.58
2647 2862 7.873719 TTTCAAGGTTCAGTTGAGTTCATTA 57.126 32.000 0.00 0.00 35.39 1.90
2650 2865 6.430925 TCAAGGTTCAGTTGAGTTCATTATGG 59.569 38.462 0.00 0.00 30.36 2.74
2657 2872 4.460382 AGTTGAGTTCATTATGGCTTGTGG 59.540 41.667 0.00 0.00 0.00 4.17
2658 2873 3.355378 TGAGTTCATTATGGCTTGTGGG 58.645 45.455 0.00 0.00 0.00 4.61
2661 2876 3.088532 GTTCATTATGGCTTGTGGGTGA 58.911 45.455 0.00 0.00 0.00 4.02
2665 2880 0.327924 TATGGCTTGTGGGTGACTGG 59.672 55.000 0.00 0.00 0.00 4.00
2666 2881 1.426251 ATGGCTTGTGGGTGACTGGA 61.426 55.000 0.00 0.00 0.00 3.86
2675 2890 1.451936 GGTGACTGGACTGCAGGTT 59.548 57.895 19.93 0.00 0.00 3.50
3011 3226 2.829003 CAGAGCATGGCCAGCCTG 60.829 66.667 13.05 18.02 36.94 4.85
3126 3345 0.110056 CAAGTGAAGCCATGCACGTC 60.110 55.000 0.00 0.00 39.88 4.34
3135 3354 4.101448 ATGCACGTCCCTCCCTGC 62.101 66.667 0.00 0.00 0.00 4.85
3151 3370 2.068277 CTGCCCGCGTACCTACCTAC 62.068 65.000 4.92 0.00 0.00 3.18
3154 3373 0.531974 CCCGCGTACCTACCTACGTA 60.532 60.000 4.92 0.00 41.34 3.57
3155 3374 0.582005 CCGCGTACCTACCTACGTAC 59.418 60.000 4.92 0.00 41.34 3.67
3156 3375 1.286501 CGCGTACCTACCTACGTACA 58.713 55.000 0.00 0.00 41.34 2.90
3157 3376 1.867233 CGCGTACCTACCTACGTACAT 59.133 52.381 0.00 0.00 41.34 2.29
3158 3377 2.096713 CGCGTACCTACCTACGTACATC 60.097 54.545 0.00 0.00 41.34 3.06
3159 3378 2.872245 GCGTACCTACCTACGTACATCA 59.128 50.000 0.00 0.00 41.34 3.07
3241 3460 3.001634 CGCGTCAGTCGGTAATAACTCTA 59.998 47.826 0.00 0.00 40.26 2.43
3251 3470 4.286101 GGTAATAACTCTACGTCTTCGCC 58.714 47.826 0.00 0.00 41.18 5.54
3302 3522 6.127168 TTCTACCCAGAGTACATGTAATGGTG 60.127 42.308 22.22 17.76 39.58 4.17
3335 3563 4.618912 CAGTTAACTGTGATCTGTCAGTCG 59.381 45.833 24.70 0.00 42.95 4.18
3337 3565 0.244994 ACTGTGATCTGTCAGTCGGC 59.755 55.000 11.07 0.00 40.28 5.54
3402 3631 2.099405 CCCGCCATTTCATTTACAGGT 58.901 47.619 0.00 0.00 0.00 4.00
3411 3640 3.337694 TCATTTACAGGTTACGGTGGG 57.662 47.619 0.00 0.00 0.00 4.61
3462 3691 3.127533 GCCATTTCTGCCTCGCGT 61.128 61.111 5.77 0.00 0.00 6.01
3465 3694 1.021390 CCATTTCTGCCTCGCGTTCT 61.021 55.000 5.77 0.00 0.00 3.01
4039 4268 3.287121 CTGAACAGCACAGCGACGC 62.287 63.158 13.03 13.03 0.00 5.19
4040 4269 4.077188 GAACAGCACAGCGACGCC 62.077 66.667 17.79 0.15 0.00 5.68
4064 4298 4.307432 ACGAGAAACATCGATCAAACACT 58.693 39.130 0.00 0.00 45.56 3.55
4083 4317 3.799755 GCGGCGTCACCATTGTCC 61.800 66.667 9.37 0.00 39.03 4.02
4113 4347 3.421826 CGATCGAGCACGCCATAATAAAC 60.422 47.826 10.26 0.00 39.58 2.01
4136 4370 1.655329 GTACCCTCGGATGAGCTCG 59.345 63.158 9.64 0.00 41.13 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 9.309516 CAAGCAAGCAAGATATATGAAACAAAT 57.690 29.630 0.00 0.00 0.00 2.32
18 19 8.306038 ACAAGCAAGCAAGATATATGAAACAAA 58.694 29.630 0.00 0.00 0.00 2.83
19 20 7.756272 CACAAGCAAGCAAGATATATGAAACAA 59.244 33.333 0.00 0.00 0.00 2.83
20 21 7.094248 ACACAAGCAAGCAAGATATATGAAACA 60.094 33.333 0.00 0.00 0.00 2.83
21 22 7.253422 ACACAAGCAAGCAAGATATATGAAAC 58.747 34.615 0.00 0.00 0.00 2.78
22 23 7.395190 ACACAAGCAAGCAAGATATATGAAA 57.605 32.000 0.00 0.00 0.00 2.69
23 24 7.395190 AACACAAGCAAGCAAGATATATGAA 57.605 32.000 0.00 0.00 0.00 2.57
24 25 7.337689 AGAAACACAAGCAAGCAAGATATATGA 59.662 33.333 0.00 0.00 0.00 2.15
25 26 7.478322 AGAAACACAAGCAAGCAAGATATATG 58.522 34.615 0.00 0.00 0.00 1.78
26 27 7.636150 AGAAACACAAGCAAGCAAGATATAT 57.364 32.000 0.00 0.00 0.00 0.86
27 28 8.737168 ATAGAAACACAAGCAAGCAAGATATA 57.263 30.769 0.00 0.00 0.00 0.86
28 29 5.972107 AGAAACACAAGCAAGCAAGATAT 57.028 34.783 0.00 0.00 0.00 1.63
29 30 7.452880 AATAGAAACACAAGCAAGCAAGATA 57.547 32.000 0.00 0.00 0.00 1.98
30 31 5.972107 ATAGAAACACAAGCAAGCAAGAT 57.028 34.783 0.00 0.00 0.00 2.40
31 32 5.560760 CGAATAGAAACACAAGCAAGCAAGA 60.561 40.000 0.00 0.00 0.00 3.02
32 33 4.614284 CGAATAGAAACACAAGCAAGCAAG 59.386 41.667 0.00 0.00 0.00 4.01
33 34 4.036262 ACGAATAGAAACACAAGCAAGCAA 59.964 37.500 0.00 0.00 0.00 3.91
34 35 3.563808 ACGAATAGAAACACAAGCAAGCA 59.436 39.130 0.00 0.00 0.00 3.91
35 36 3.908382 CACGAATAGAAACACAAGCAAGC 59.092 43.478 0.00 0.00 0.00 4.01
36 37 5.095691 ACACGAATAGAAACACAAGCAAG 57.904 39.130 0.00 0.00 0.00 4.01
37 38 5.270083 CAACACGAATAGAAACACAAGCAA 58.730 37.500 0.00 0.00 0.00 3.91
38 39 4.788201 GCAACACGAATAGAAACACAAGCA 60.788 41.667 0.00 0.00 0.00 3.91
39 40 3.664025 GCAACACGAATAGAAACACAAGC 59.336 43.478 0.00 0.00 0.00 4.01
40 41 4.843147 TGCAACACGAATAGAAACACAAG 58.157 39.130 0.00 0.00 0.00 3.16
41 42 4.884458 TGCAACACGAATAGAAACACAA 57.116 36.364 0.00 0.00 0.00 3.33
42 43 4.513318 TGATGCAACACGAATAGAAACACA 59.487 37.500 0.00 0.00 0.00 3.72
43 44 5.029650 TGATGCAACACGAATAGAAACAC 57.970 39.130 0.00 0.00 0.00 3.32
44 45 5.878332 ATGATGCAACACGAATAGAAACA 57.122 34.783 0.00 0.00 0.00 2.83
45 46 8.223769 CCTATATGATGCAACACGAATAGAAAC 58.776 37.037 17.40 0.00 0.00 2.78
46 47 7.931407 ACCTATATGATGCAACACGAATAGAAA 59.069 33.333 17.40 0.00 0.00 2.52
47 48 7.441836 ACCTATATGATGCAACACGAATAGAA 58.558 34.615 17.40 0.00 0.00 2.10
48 49 6.993079 ACCTATATGATGCAACACGAATAGA 58.007 36.000 17.40 0.00 0.00 1.98
49 50 7.513132 CAACCTATATGATGCAACACGAATAG 58.487 38.462 0.00 7.22 0.00 1.73
50 51 6.073276 GCAACCTATATGATGCAACACGAATA 60.073 38.462 0.00 0.00 38.63 1.75
51 52 5.277974 GCAACCTATATGATGCAACACGAAT 60.278 40.000 0.00 0.00 38.63 3.34
52 53 4.035091 GCAACCTATATGATGCAACACGAA 59.965 41.667 0.00 0.00 38.63 3.85
53 54 3.559655 GCAACCTATATGATGCAACACGA 59.440 43.478 0.00 0.00 38.63 4.35
54 55 3.561310 AGCAACCTATATGATGCAACACG 59.439 43.478 11.71 0.00 41.18 4.49
55 56 4.576053 TGAGCAACCTATATGATGCAACAC 59.424 41.667 11.71 0.00 41.18 3.32
56 57 4.779696 TGAGCAACCTATATGATGCAACA 58.220 39.130 11.71 0.00 41.18 3.33
57 58 5.704515 AGATGAGCAACCTATATGATGCAAC 59.295 40.000 11.71 6.73 41.18 4.17
58 59 5.872963 AGATGAGCAACCTATATGATGCAA 58.127 37.500 11.71 1.86 41.18 4.08
59 60 5.494390 AGATGAGCAACCTATATGATGCA 57.506 39.130 11.71 0.00 41.18 3.96
60 61 6.638610 ACTAGATGAGCAACCTATATGATGC 58.361 40.000 0.00 2.62 39.06 3.91
61 62 7.064371 GCAACTAGATGAGCAACCTATATGATG 59.936 40.741 3.85 0.00 0.00 3.07
62 63 7.102346 GCAACTAGATGAGCAACCTATATGAT 58.898 38.462 3.85 0.00 0.00 2.45
63 64 6.041979 TGCAACTAGATGAGCAACCTATATGA 59.958 38.462 3.85 0.00 33.48 2.15
64 65 6.226052 TGCAACTAGATGAGCAACCTATATG 58.774 40.000 3.85 0.00 33.48 1.78
65 66 6.425210 TGCAACTAGATGAGCAACCTATAT 57.575 37.500 3.85 0.00 33.48 0.86
66 67 5.869649 TGCAACTAGATGAGCAACCTATA 57.130 39.130 3.85 0.00 33.48 1.31
67 68 4.760530 TGCAACTAGATGAGCAACCTAT 57.239 40.909 3.85 0.00 33.48 2.57
68 69 4.760530 ATGCAACTAGATGAGCAACCTA 57.239 40.909 3.85 0.00 40.76 3.08
69 70 3.641434 ATGCAACTAGATGAGCAACCT 57.359 42.857 3.85 0.00 40.76 3.50
70 71 5.303971 AGATATGCAACTAGATGAGCAACC 58.696 41.667 3.85 0.00 40.76 3.77
71 72 7.328249 GTCTAGATATGCAACTAGATGAGCAAC 59.672 40.741 22.17 11.07 44.12 4.17
72 73 7.014615 TGTCTAGATATGCAACTAGATGAGCAA 59.985 37.037 22.17 9.21 44.12 3.91
73 74 6.491403 TGTCTAGATATGCAACTAGATGAGCA 59.509 38.462 22.17 15.89 44.12 4.26
74 75 6.918626 TGTCTAGATATGCAACTAGATGAGC 58.081 40.000 22.17 14.31 44.12 4.26
75 76 7.812191 GGTTGTCTAGATATGCAACTAGATGAG 59.188 40.741 22.17 5.93 44.12 2.90
76 77 7.507277 AGGTTGTCTAGATATGCAACTAGATGA 59.493 37.037 22.17 14.99 44.12 2.92
77 78 7.665690 AGGTTGTCTAGATATGCAACTAGATG 58.334 38.462 22.17 0.00 44.12 2.90
78 79 7.847711 AGGTTGTCTAGATATGCAACTAGAT 57.152 36.000 22.17 10.38 44.12 1.98
79 80 7.999545 AGTAGGTTGTCTAGATATGCAACTAGA 59.000 37.037 18.23 18.21 41.50 2.43
80 81 8.172352 AGTAGGTTGTCTAGATATGCAACTAG 57.828 38.462 18.23 15.26 40.49 2.57
81 82 8.534954 AAGTAGGTTGTCTAGATATGCAACTA 57.465 34.615 18.23 9.66 40.49 2.24
82 83 7.425224 AAGTAGGTTGTCTAGATATGCAACT 57.575 36.000 18.23 7.55 40.49 3.16
83 84 7.764443 TCAAAGTAGGTTGTCTAGATATGCAAC 59.236 37.037 13.07 13.07 40.08 4.17
84 85 7.847096 TCAAAGTAGGTTGTCTAGATATGCAA 58.153 34.615 0.00 0.00 0.00 4.08
85 86 7.418337 TCAAAGTAGGTTGTCTAGATATGCA 57.582 36.000 0.00 0.00 0.00 3.96
86 87 7.095439 GCATCAAAGTAGGTTGTCTAGATATGC 60.095 40.741 0.00 0.00 0.00 3.14
87 88 7.928167 TGCATCAAAGTAGGTTGTCTAGATATG 59.072 37.037 0.00 0.00 0.00 1.78
88 89 8.023021 TGCATCAAAGTAGGTTGTCTAGATAT 57.977 34.615 0.00 0.00 0.00 1.63
89 90 7.418337 TGCATCAAAGTAGGTTGTCTAGATA 57.582 36.000 0.00 0.00 0.00 1.98
90 91 6.299805 TGCATCAAAGTAGGTTGTCTAGAT 57.700 37.500 0.00 0.00 0.00 1.98
91 92 5.738619 TGCATCAAAGTAGGTTGTCTAGA 57.261 39.130 0.00 0.00 0.00 2.43
92 93 6.801539 TTTGCATCAAAGTAGGTTGTCTAG 57.198 37.500 0.00 0.00 0.00 2.43
93 94 6.801539 CTTTGCATCAAAGTAGGTTGTCTA 57.198 37.500 10.28 0.00 43.85 2.59
94 95 5.695851 CTTTGCATCAAAGTAGGTTGTCT 57.304 39.130 10.28 0.00 43.85 3.41
111 112 9.158364 GCTTTTCTTTAGCAATTTAAACTTTGC 57.842 29.630 15.59 15.59 46.68 3.68
129 130 8.826710 GGCAACTAACAATTTTTAGCTTTTCTT 58.173 29.630 10.61 0.00 33.02 2.52
130 131 8.365399 GGCAACTAACAATTTTTAGCTTTTCT 57.635 30.769 10.61 0.00 33.02 2.52
163 164 2.563179 CGATATGGTTGACTAGAGGGGG 59.437 54.545 0.00 0.00 0.00 5.40
164 165 3.497332 TCGATATGGTTGACTAGAGGGG 58.503 50.000 0.00 0.00 0.00 4.79
165 166 4.158764 GGATCGATATGGTTGACTAGAGGG 59.841 50.000 0.00 0.00 0.00 4.30
166 167 5.013547 AGGATCGATATGGTTGACTAGAGG 58.986 45.833 0.00 0.00 0.00 3.69
167 168 6.582677 AAGGATCGATATGGTTGACTAGAG 57.417 41.667 0.00 0.00 0.00 2.43
168 169 6.549736 TGAAAGGATCGATATGGTTGACTAGA 59.450 38.462 0.00 0.00 0.00 2.43
169 170 6.749139 TGAAAGGATCGATATGGTTGACTAG 58.251 40.000 0.00 0.00 0.00 2.57
170 171 6.724893 TGAAAGGATCGATATGGTTGACTA 57.275 37.500 0.00 0.00 0.00 2.59
171 172 5.605534 CTGAAAGGATCGATATGGTTGACT 58.394 41.667 0.00 0.00 0.00 3.41
172 173 4.212214 GCTGAAAGGATCGATATGGTTGAC 59.788 45.833 0.00 0.00 0.00 3.18
173 174 4.141733 TGCTGAAAGGATCGATATGGTTGA 60.142 41.667 0.00 0.00 0.00 3.18
174 175 4.129380 TGCTGAAAGGATCGATATGGTTG 58.871 43.478 0.00 0.00 0.00 3.77
175 176 4.422073 TGCTGAAAGGATCGATATGGTT 57.578 40.909 0.00 0.00 0.00 3.67
176 177 4.630644 ATGCTGAAAGGATCGATATGGT 57.369 40.909 0.00 0.00 43.79 3.55
177 178 4.999311 TCAATGCTGAAAGGATCGATATGG 59.001 41.667 0.00 0.00 43.79 2.74
178 179 6.738832 ATCAATGCTGAAAGGATCGATATG 57.261 37.500 0.00 0.00 43.79 1.78
179 180 6.373774 GGAATCAATGCTGAAAGGATCGATAT 59.626 38.462 0.00 0.00 43.79 1.63
180 181 5.702670 GGAATCAATGCTGAAAGGATCGATA 59.297 40.000 0.00 0.00 43.79 2.92
181 182 4.518211 GGAATCAATGCTGAAAGGATCGAT 59.482 41.667 0.00 0.00 43.79 3.59
182 183 3.879295 GGAATCAATGCTGAAAGGATCGA 59.121 43.478 0.00 0.00 43.79 3.59
183 184 3.004106 GGGAATCAATGCTGAAAGGATCG 59.996 47.826 0.00 0.00 43.79 3.69
184 185 3.004106 CGGGAATCAATGCTGAAAGGATC 59.996 47.826 0.00 0.00 43.79 3.36
186 187 2.368439 CGGGAATCAATGCTGAAAGGA 58.632 47.619 0.00 0.00 40.11 3.36
187 188 1.202336 GCGGGAATCAATGCTGAAAGG 60.202 52.381 0.00 0.00 34.49 3.11
188 189 1.532505 CGCGGGAATCAATGCTGAAAG 60.533 52.381 0.00 0.00 34.49 2.62
189 190 0.451383 CGCGGGAATCAATGCTGAAA 59.549 50.000 0.00 0.00 34.49 2.69
190 191 1.375853 CCGCGGGAATCAATGCTGAA 61.376 55.000 20.10 0.00 34.49 3.02
191 192 1.819208 CCGCGGGAATCAATGCTGA 60.819 57.895 20.10 0.00 35.56 4.26
192 193 2.717485 CCGCGGGAATCAATGCTG 59.283 61.111 20.10 0.00 0.00 4.41
193 194 2.516930 CCCGCGGGAATCAATGCT 60.517 61.111 41.82 0.00 37.50 3.79
194 195 2.515991 TCCCGCGGGAATCAATGC 60.516 61.111 43.93 0.00 42.05 3.56
206 207 3.564027 CATCGCCTCGTTTCCCGC 61.564 66.667 0.00 0.00 36.19 6.13
207 208 2.125673 ACATCGCCTCGTTTCCCG 60.126 61.111 0.00 0.00 38.13 5.14
208 209 2.106683 CCACATCGCCTCGTTTCCC 61.107 63.158 0.00 0.00 0.00 3.97
209 210 1.079405 TCCACATCGCCTCGTTTCC 60.079 57.895 0.00 0.00 0.00 3.13
210 211 1.683790 CGTCCACATCGCCTCGTTTC 61.684 60.000 0.00 0.00 0.00 2.78
211 212 1.736645 CGTCCACATCGCCTCGTTT 60.737 57.895 0.00 0.00 0.00 3.60
212 213 2.126071 CGTCCACATCGCCTCGTT 60.126 61.111 0.00 0.00 0.00 3.85
213 214 3.060000 TCGTCCACATCGCCTCGT 61.060 61.111 0.00 0.00 0.00 4.18
214 215 2.579787 GTCGTCCACATCGCCTCG 60.580 66.667 0.00 0.00 0.00 4.63
215 216 2.537792 TTCGTCGTCCACATCGCCTC 62.538 60.000 0.00 0.00 0.00 4.70
216 217 2.543687 CTTCGTCGTCCACATCGCCT 62.544 60.000 0.00 0.00 0.00 5.52
217 218 2.126228 TTCGTCGTCCACATCGCC 60.126 61.111 0.00 0.00 0.00 5.54
218 219 2.789203 GCTTCGTCGTCCACATCGC 61.789 63.158 0.00 0.00 0.00 4.58
219 220 2.497092 CGCTTCGTCGTCCACATCG 61.497 63.158 0.00 0.00 0.00 3.84
220 221 2.158959 CCGCTTCGTCGTCCACATC 61.159 63.158 0.00 0.00 0.00 3.06
221 222 2.126071 CCGCTTCGTCGTCCACAT 60.126 61.111 0.00 0.00 0.00 3.21
246 247 3.391665 GATGGACCCGCCCTGTCAG 62.392 68.421 0.00 0.00 34.36 3.51
247 248 3.399181 GATGGACCCGCCCTGTCA 61.399 66.667 0.00 0.00 34.36 3.58
248 249 3.399181 TGATGGACCCGCCCTGTC 61.399 66.667 0.00 0.00 34.97 3.51
249 250 3.717294 GTGATGGACCCGCCCTGT 61.717 66.667 0.00 0.00 34.97 4.00
250 251 3.687321 CTGTGATGGACCCGCCCTG 62.687 68.421 0.00 0.00 34.97 4.45
251 252 3.402681 CTGTGATGGACCCGCCCT 61.403 66.667 0.00 0.00 34.97 5.19
252 253 3.268103 AACTGTGATGGACCCGCCC 62.268 63.158 0.00 0.00 34.97 6.13
253 254 1.745489 GAACTGTGATGGACCCGCC 60.745 63.158 0.00 0.00 37.10 6.13
254 255 2.100631 CGAACTGTGATGGACCCGC 61.101 63.158 0.00 0.00 0.00 6.13
255 256 2.100631 GCGAACTGTGATGGACCCG 61.101 63.158 0.00 0.00 0.00 5.28
256 257 2.100631 CGCGAACTGTGATGGACCC 61.101 63.158 0.00 0.00 0.00 4.46
257 258 2.740714 GCGCGAACTGTGATGGACC 61.741 63.158 12.10 0.00 0.00 4.46
258 259 2.740714 GGCGCGAACTGTGATGGAC 61.741 63.158 12.10 0.00 0.00 4.02
259 260 2.434185 GGCGCGAACTGTGATGGA 60.434 61.111 12.10 0.00 0.00 3.41
260 261 1.851021 TTTGGCGCGAACTGTGATGG 61.851 55.000 12.10 0.00 0.00 3.51
261 262 0.040514 TTTTGGCGCGAACTGTGATG 60.041 50.000 12.10 0.00 0.00 3.07
262 263 0.665835 TTTTTGGCGCGAACTGTGAT 59.334 45.000 12.10 0.00 0.00 3.06
263 264 0.248296 GTTTTTGGCGCGAACTGTGA 60.248 50.000 12.10 0.00 0.00 3.58
264 265 1.528248 CGTTTTTGGCGCGAACTGTG 61.528 55.000 12.10 0.00 0.00 3.66
265 266 1.298041 CGTTTTTGGCGCGAACTGT 60.298 52.632 12.10 0.00 0.00 3.55
266 267 2.008697 CCGTTTTTGGCGCGAACTG 61.009 57.895 12.10 0.00 0.00 3.16
267 268 2.330041 CCGTTTTTGGCGCGAACT 59.670 55.556 12.10 0.00 0.00 3.01
268 269 2.007114 GACCGTTTTTGGCGCGAAC 61.007 57.895 12.10 3.48 0.00 3.95
269 270 2.328639 GACCGTTTTTGGCGCGAA 59.671 55.556 12.10 0.00 0.00 4.70
270 271 3.652000 GGACCGTTTTTGGCGCGA 61.652 61.111 12.10 0.00 0.00 5.87
272 273 3.867226 GACGGACCGTTTTTGGCGC 62.867 63.158 22.69 0.00 41.37 6.53
273 274 2.250190 GACGGACCGTTTTTGGCG 59.750 61.111 22.69 0.00 41.37 5.69
274 275 2.640989 GGACGGACCGTTTTTGGC 59.359 61.111 22.69 6.80 41.37 4.52
299 300 4.864334 GTGCTGGGGATCGCCTGG 62.864 72.222 29.06 21.74 0.00 4.45
314 315 3.411351 CAACTCGAACCCGGCGTG 61.411 66.667 6.01 0.00 36.24 5.34
315 316 4.675029 CCAACTCGAACCCGGCGT 62.675 66.667 6.01 0.00 36.24 5.68
316 317 2.287457 TATCCAACTCGAACCCGGCG 62.287 60.000 0.00 0.00 36.24 6.46
317 318 0.808847 GTATCCAACTCGAACCCGGC 60.809 60.000 0.00 0.00 36.24 6.13
318 319 0.526954 CGTATCCAACTCGAACCCGG 60.527 60.000 0.00 0.00 36.24 5.73
319 320 1.143969 GCGTATCCAACTCGAACCCG 61.144 60.000 0.00 0.00 37.07 5.28
320 321 0.808847 GGCGTATCCAACTCGAACCC 60.809 60.000 0.00 0.00 34.01 4.11
321 322 1.143969 CGGCGTATCCAACTCGAACC 61.144 60.000 0.00 0.00 34.01 3.62
322 323 1.143969 CCGGCGTATCCAACTCGAAC 61.144 60.000 6.01 0.00 34.01 3.95
323 324 1.140161 CCGGCGTATCCAACTCGAA 59.860 57.895 6.01 0.00 34.01 3.71
324 325 2.802792 CCGGCGTATCCAACTCGA 59.197 61.111 6.01 0.00 34.01 4.04
325 326 2.960129 GCCGGCGTATCCAACTCG 60.960 66.667 12.58 0.00 34.01 4.18
326 327 2.960129 CGCCGGCGTATCCAACTC 60.960 66.667 39.71 0.00 34.01 3.01
336 337 2.098298 CAGAAATTGACGCCGGCG 59.902 61.111 44.88 44.88 46.03 6.46
337 338 2.202479 GCAGAAATTGACGCCGGC 60.202 61.111 19.07 19.07 0.00 6.13
338 339 2.485122 GGCAGAAATTGACGCCGG 59.515 61.111 0.00 0.00 34.26 6.13
339 340 1.861542 TTGGGCAGAAATTGACGCCG 61.862 55.000 6.27 0.00 45.85 6.46
340 341 0.532115 ATTGGGCAGAAATTGACGCC 59.468 50.000 4.13 4.13 44.10 5.68
341 342 1.469767 GGATTGGGCAGAAATTGACGC 60.470 52.381 0.00 0.00 34.72 5.19
342 343 1.202177 CGGATTGGGCAGAAATTGACG 60.202 52.381 0.00 0.00 34.72 4.35
343 344 1.134946 CCGGATTGGGCAGAAATTGAC 59.865 52.381 0.00 0.00 0.00 3.18
344 345 1.473258 CCGGATTGGGCAGAAATTGA 58.527 50.000 0.00 0.00 0.00 2.57
354 355 2.882132 GTTTTCCGCCGGATTGGG 59.118 61.111 6.69 0.00 38.63 4.12
355 356 2.483288 CGTTTTCCGCCGGATTGG 59.517 61.111 6.69 2.91 42.50 3.16
360 361 2.757056 GGAATCCGTTTTCCGCCGG 61.757 63.158 0.00 0.00 45.55 6.13
361 362 2.789249 GGAATCCGTTTTCCGCCG 59.211 61.111 0.00 0.00 36.12 6.46
365 366 1.472878 GCCTTCAGGAATCCGTTTTCC 59.527 52.381 0.00 5.66 44.67 3.13
366 367 1.130561 CGCCTTCAGGAATCCGTTTTC 59.869 52.381 0.00 0.00 37.39 2.29
367 368 1.165270 CGCCTTCAGGAATCCGTTTT 58.835 50.000 0.00 0.00 37.39 2.43
368 369 1.305930 GCGCCTTCAGGAATCCGTTT 61.306 55.000 0.00 0.00 37.39 3.60
369 370 1.745489 GCGCCTTCAGGAATCCGTT 60.745 57.895 0.00 0.00 37.39 4.44
370 371 2.125106 GCGCCTTCAGGAATCCGT 60.125 61.111 0.00 0.00 37.39 4.69
371 372 3.264897 CGCGCCTTCAGGAATCCG 61.265 66.667 0.00 0.00 37.39 4.18
372 373 2.174319 GTCGCGCCTTCAGGAATCC 61.174 63.158 0.00 0.00 37.39 3.01
373 374 1.153549 AGTCGCGCCTTCAGGAATC 60.154 57.895 0.00 0.00 37.39 2.52
374 375 1.448540 CAGTCGCGCCTTCAGGAAT 60.449 57.895 0.00 0.00 37.39 3.01
375 376 2.048222 CAGTCGCGCCTTCAGGAA 60.048 61.111 0.00 0.00 37.39 3.36
376 377 4.069232 CCAGTCGCGCCTTCAGGA 62.069 66.667 0.00 0.00 37.39 3.86
380 381 2.925162 AATAGCCCAGTCGCGCCTTC 62.925 60.000 0.00 0.00 0.00 3.46
381 382 2.536997 AAATAGCCCAGTCGCGCCTT 62.537 55.000 0.00 0.00 0.00 4.35
382 383 2.536997 AAAATAGCCCAGTCGCGCCT 62.537 55.000 0.00 0.00 0.00 5.52
383 384 1.654023 AAAAATAGCCCAGTCGCGCC 61.654 55.000 0.00 0.00 0.00 6.53
384 385 1.800681 AAAAATAGCCCAGTCGCGC 59.199 52.632 0.00 0.00 0.00 6.86
407 408 1.008995 CACTTTTTCGGCACCGGTG 60.009 57.895 30.66 30.66 40.25 4.94
408 409 1.441732 GACACTTTTTCGGCACCGGT 61.442 55.000 0.00 0.00 40.25 5.28
409 410 1.281656 GACACTTTTTCGGCACCGG 59.718 57.895 9.58 0.00 40.25 5.28
410 411 1.164041 AGGACACTTTTTCGGCACCG 61.164 55.000 1.73 1.73 41.35 4.94
411 412 0.310854 CAGGACACTTTTTCGGCACC 59.689 55.000 0.00 0.00 0.00 5.01
412 413 0.310854 CCAGGACACTTTTTCGGCAC 59.689 55.000 0.00 0.00 0.00 5.01
413 414 0.821711 CCCAGGACACTTTTTCGGCA 60.822 55.000 0.00 0.00 0.00 5.69
414 415 1.524008 CCCCAGGACACTTTTTCGGC 61.524 60.000 0.00 0.00 0.00 5.54
415 416 0.179001 ACCCCAGGACACTTTTTCGG 60.179 55.000 0.00 0.00 0.00 4.30
416 417 0.951558 CACCCCAGGACACTTTTTCG 59.048 55.000 0.00 0.00 0.00 3.46
417 418 0.673985 GCACCCCAGGACACTTTTTC 59.326 55.000 0.00 0.00 0.00 2.29
418 419 0.759060 GGCACCCCAGGACACTTTTT 60.759 55.000 0.00 0.00 0.00 1.94
419 420 1.152546 GGCACCCCAGGACACTTTT 60.153 57.895 0.00 0.00 0.00 2.27
420 421 2.084930 AGGCACCCCAGGACACTTT 61.085 57.895 0.00 0.00 0.00 2.66
421 422 2.450502 AGGCACCCCAGGACACTT 60.451 61.111 0.00 0.00 0.00 3.16
422 423 3.252284 CAGGCACCCCAGGACACT 61.252 66.667 0.00 0.00 0.00 3.55
423 424 3.133365 AACAGGCACCCCAGGACAC 62.133 63.158 0.00 0.00 0.00 3.67
424 425 2.776526 AACAGGCACCCCAGGACA 60.777 61.111 0.00 0.00 0.00 4.02
425 426 2.282462 CAACAGGCACCCCAGGAC 60.282 66.667 0.00 0.00 0.00 3.85
426 427 3.579302 CCAACAGGCACCCCAGGA 61.579 66.667 0.00 0.00 0.00 3.86
427 428 4.684134 CCCAACAGGCACCCCAGG 62.684 72.222 0.00 0.00 0.00 4.45
428 429 4.684134 CCCCAACAGGCACCCCAG 62.684 72.222 0.00 0.00 0.00 4.45
430 431 4.678743 GTCCCCAACAGGCACCCC 62.679 72.222 0.00 0.00 0.00 4.95
442 443 4.796495 ATTTCCAGCCGCGTCCCC 62.796 66.667 4.92 0.00 0.00 4.81
443 444 3.508840 CATTTCCAGCCGCGTCCC 61.509 66.667 4.92 0.00 0.00 4.46
444 445 2.253414 GAACATTTCCAGCCGCGTCC 62.253 60.000 4.92 0.00 0.00 4.79
445 446 1.134694 GAACATTTCCAGCCGCGTC 59.865 57.895 4.92 0.00 0.00 5.19
446 447 0.036765 TAGAACATTTCCAGCCGCGT 60.037 50.000 4.92 0.00 0.00 6.01
447 448 1.299541 ATAGAACATTTCCAGCCGCG 58.700 50.000 0.00 0.00 0.00 6.46
448 449 2.423538 ACAATAGAACATTTCCAGCCGC 59.576 45.455 0.00 0.00 0.00 6.53
449 450 3.689161 TCACAATAGAACATTTCCAGCCG 59.311 43.478 0.00 0.00 0.00 5.52
450 451 4.096984 CCTCACAATAGAACATTTCCAGCC 59.903 45.833 0.00 0.00 0.00 4.85
451 452 4.439289 GCCTCACAATAGAACATTTCCAGC 60.439 45.833 0.00 0.00 0.00 4.85
452 453 4.201851 CGCCTCACAATAGAACATTTCCAG 60.202 45.833 0.00 0.00 0.00 3.86
453 454 3.689161 CGCCTCACAATAGAACATTTCCA 59.311 43.478 0.00 0.00 0.00 3.53
454 455 3.938963 TCGCCTCACAATAGAACATTTCC 59.061 43.478 0.00 0.00 0.00 3.13
455 456 4.034510 CCTCGCCTCACAATAGAACATTTC 59.965 45.833 0.00 0.00 0.00 2.17
456 457 3.941483 CCTCGCCTCACAATAGAACATTT 59.059 43.478 0.00 0.00 0.00 2.32
457 458 3.197766 TCCTCGCCTCACAATAGAACATT 59.802 43.478 0.00 0.00 0.00 2.71
458 459 2.766263 TCCTCGCCTCACAATAGAACAT 59.234 45.455 0.00 0.00 0.00 2.71
459 460 2.176045 TCCTCGCCTCACAATAGAACA 58.824 47.619 0.00 0.00 0.00 3.18
460 461 2.961526 TCCTCGCCTCACAATAGAAC 57.038 50.000 0.00 0.00 0.00 3.01
461 462 3.450817 TCATTCCTCGCCTCACAATAGAA 59.549 43.478 0.00 0.00 0.00 2.10
462 463 3.031013 TCATTCCTCGCCTCACAATAGA 58.969 45.455 0.00 0.00 0.00 1.98
463 464 3.388308 CTCATTCCTCGCCTCACAATAG 58.612 50.000 0.00 0.00 0.00 1.73
464 465 2.103094 CCTCATTCCTCGCCTCACAATA 59.897 50.000 0.00 0.00 0.00 1.90
465 466 1.134280 CCTCATTCCTCGCCTCACAAT 60.134 52.381 0.00 0.00 0.00 2.71
466 467 0.250234 CCTCATTCCTCGCCTCACAA 59.750 55.000 0.00 0.00 0.00 3.33
467 468 0.614697 TCCTCATTCCTCGCCTCACA 60.615 55.000 0.00 0.00 0.00 3.58
468 469 0.103937 CTCCTCATTCCTCGCCTCAC 59.896 60.000 0.00 0.00 0.00 3.51
469 470 0.324738 ACTCCTCATTCCTCGCCTCA 60.325 55.000 0.00 0.00 0.00 3.86
470 471 0.103937 CACTCCTCATTCCTCGCCTC 59.896 60.000 0.00 0.00 0.00 4.70
471 472 0.324738 TCACTCCTCATTCCTCGCCT 60.325 55.000 0.00 0.00 0.00 5.52
472 473 0.179097 GTCACTCCTCATTCCTCGCC 60.179 60.000 0.00 0.00 0.00 5.54
473 474 0.820871 AGTCACTCCTCATTCCTCGC 59.179 55.000 0.00 0.00 0.00 5.03
474 475 2.621055 CCTAGTCACTCCTCATTCCTCG 59.379 54.545 0.00 0.00 0.00 4.63
475 476 2.364002 GCCTAGTCACTCCTCATTCCTC 59.636 54.545 0.00 0.00 0.00 3.71
476 477 2.393646 GCCTAGTCACTCCTCATTCCT 58.606 52.381 0.00 0.00 0.00 3.36
477 478 1.067821 CGCCTAGTCACTCCTCATTCC 59.932 57.143 0.00 0.00 0.00 3.01
478 479 1.537135 GCGCCTAGTCACTCCTCATTC 60.537 57.143 0.00 0.00 0.00 2.67
479 480 0.461961 GCGCCTAGTCACTCCTCATT 59.538 55.000 0.00 0.00 0.00 2.57
480 481 0.396417 AGCGCCTAGTCACTCCTCAT 60.396 55.000 2.29 0.00 0.00 2.90
481 482 1.000771 AGCGCCTAGTCACTCCTCA 60.001 57.895 2.29 0.00 0.00 3.86
482 483 1.316706 ACAGCGCCTAGTCACTCCTC 61.317 60.000 2.29 0.00 0.00 3.71
483 484 1.304547 ACAGCGCCTAGTCACTCCT 60.305 57.895 2.29 0.00 0.00 3.69
484 485 1.139947 GACAGCGCCTAGTCACTCC 59.860 63.158 17.20 0.00 34.93 3.85
485 486 1.139947 GGACAGCGCCTAGTCACTC 59.860 63.158 21.68 6.07 36.50 3.51
486 487 2.701780 CGGACAGCGCCTAGTCACT 61.702 63.158 21.68 0.00 36.50 3.41
487 488 2.202623 CGGACAGCGCCTAGTCAC 60.203 66.667 21.68 12.75 36.50 3.67
488 489 4.129737 GCGGACAGCGCCTAGTCA 62.130 66.667 21.68 0.00 36.50 3.41
504 505 3.740128 ATGTCTGGGATGCGTCCGC 62.740 63.158 18.79 12.05 46.09 5.54
505 506 1.153369 AATGTCTGGGATGCGTCCG 60.153 57.895 18.79 6.20 46.09 4.79
506 507 0.392998 ACAATGTCTGGGATGCGTCC 60.393 55.000 17.28 17.28 44.29 4.79
507 508 0.729116 CACAATGTCTGGGATGCGTC 59.271 55.000 0.00 0.00 0.00 5.19
508 509 0.677731 CCACAATGTCTGGGATGCGT 60.678 55.000 0.00 0.00 0.00 5.24
509 510 2.100846 CCACAATGTCTGGGATGCG 58.899 57.895 0.00 0.00 0.00 4.73
515 516 0.318120 GTTTGCCCCACAATGTCTGG 59.682 55.000 0.00 0.00 38.31 3.86
516 517 1.331214 AGTTTGCCCCACAATGTCTG 58.669 50.000 0.00 0.00 38.31 3.51
517 518 2.086610 AAGTTTGCCCCACAATGTCT 57.913 45.000 0.00 0.00 38.31 3.41
518 519 2.158971 ACAAAGTTTGCCCCACAATGTC 60.159 45.455 15.59 0.00 38.31 3.06
519 520 1.836802 ACAAAGTTTGCCCCACAATGT 59.163 42.857 15.59 0.00 38.31 2.71
520 521 2.618442 ACAAAGTTTGCCCCACAATG 57.382 45.000 15.59 0.00 38.31 2.82
521 522 4.163268 ACTTTACAAAGTTTGCCCCACAAT 59.837 37.500 15.59 0.00 46.52 2.71
522 523 3.515901 ACTTTACAAAGTTTGCCCCACAA 59.484 39.130 15.59 0.00 46.52 3.33
523 524 3.100671 ACTTTACAAAGTTTGCCCCACA 58.899 40.909 15.59 0.00 46.52 4.17
524 525 3.812156 ACTTTACAAAGTTTGCCCCAC 57.188 42.857 15.59 0.00 46.52 4.61
534 535 8.261492 AGCATCTACAATCAGACTTTACAAAG 57.739 34.615 0.13 0.13 41.73 2.77
535 536 8.256611 GAGCATCTACAATCAGACTTTACAAA 57.743 34.615 0.00 0.00 0.00 2.83
536 537 7.834068 GAGCATCTACAATCAGACTTTACAA 57.166 36.000 0.00 0.00 0.00 2.41
562 563 9.274065 GCTTCGAAGAAAATAAAAACATATCGT 57.726 29.630 28.95 0.00 45.90 3.73
563 564 9.272901 TGCTTCGAAGAAAATAAAAACATATCG 57.727 29.630 28.95 0.00 45.90 2.92
566 567 9.825972 CTCTGCTTCGAAGAAAATAAAAACATA 57.174 29.630 28.95 4.93 45.90 2.29
584 585 2.564947 TGGGTTCTCTCTTCTCTGCTTC 59.435 50.000 0.00 0.00 0.00 3.86
590 591 0.533032 CCGGTGGGTTCTCTCTTCTC 59.467 60.000 0.00 0.00 0.00 2.87
591 592 0.114560 TCCGGTGGGTTCTCTCTTCT 59.885 55.000 0.00 0.00 33.83 2.85
595 596 1.950973 GAGCTCCGGTGGGTTCTCTC 61.951 65.000 0.87 0.00 33.26 3.20
596 597 1.985116 GAGCTCCGGTGGGTTCTCT 60.985 63.158 0.87 0.00 33.26 3.10
597 598 2.579738 GAGCTCCGGTGGGTTCTC 59.420 66.667 0.87 0.00 33.83 2.87
598 599 3.382832 CGAGCTCCGGTGGGTTCT 61.383 66.667 8.47 0.00 33.91 3.01
599 600 3.379445 TCGAGCTCCGGTGGGTTC 61.379 66.667 8.47 0.00 39.14 3.62
600 601 3.692406 GTCGAGCTCCGGTGGGTT 61.692 66.667 8.47 0.00 39.14 4.11
601 602 4.988716 TGTCGAGCTCCGGTGGGT 62.989 66.667 8.47 0.76 39.14 4.51
731 747 3.440872 CCTTCTTCGAGGATATCTACGGG 59.559 52.174 16.90 12.20 39.25 5.28
732 748 3.119779 GCCTTCTTCGAGGATATCTACGG 60.120 52.174 16.90 6.95 39.25 4.02
744 760 4.082523 CTGGGGCGCCTTCTTCGA 62.083 66.667 28.56 5.16 0.00 3.71
759 775 2.202492 CGGTTCGGCTCGTCTCTG 60.202 66.667 0.00 0.00 0.00 3.35
850 875 2.898343 TCGGCGGTCGATCGATCA 60.898 61.111 26.79 5.60 43.74 2.92
981 1008 1.153588 GAGGTGAGCTGAGCAGAGC 60.154 63.158 7.39 1.60 39.46 4.09
985 1012 2.661399 GCTGAGGTGAGCTGAGCA 59.339 61.111 17.85 0.00 35.95 4.26
995 1022 4.423209 GGGGGAGGGAGCTGAGGT 62.423 72.222 0.00 0.00 0.00 3.85
997 1024 2.445654 GAGGGGGAGGGAGCTGAG 60.446 72.222 0.00 0.00 0.00 3.35
998 1025 2.955246 AGAGGGGGAGGGAGCTGA 60.955 66.667 0.00 0.00 0.00 4.26
1000 1027 3.773154 GGAGAGGGGGAGGGAGCT 61.773 72.222 0.00 0.00 0.00 4.09
1048 1075 2.802667 CGCACTTCTTCATCGCCGG 61.803 63.158 0.00 0.00 0.00 6.13
1228 1255 0.037590 AGGAGGAGATCGATCGAGGG 59.962 60.000 23.84 0.00 0.00 4.30
1246 1273 0.366871 CTGCTGCGCTACGTTAACAG 59.633 55.000 9.73 0.00 0.00 3.16
1294 1341 3.502191 TCCAAAAATTCCGTGCTATGC 57.498 42.857 0.00 0.00 0.00 3.14
1300 1352 4.805192 CCATAAGCATCCAAAAATTCCGTG 59.195 41.667 0.00 0.00 0.00 4.94
1317 1369 2.953648 TCAGAACATGCCATGCCATAAG 59.046 45.455 4.17 0.00 0.00 1.73
1388 1445 0.744874 ATGCAAGCACCATCTCATGC 59.255 50.000 0.00 0.00 42.39 4.06
1408 1465 6.483307 TCAATTAATTCTAGTCGGCAGGAATG 59.517 38.462 7.94 0.00 0.00 2.67
1452 1516 3.589881 GCATGGCCCGCATCTCAC 61.590 66.667 9.30 0.00 0.00 3.51
1471 1535 0.466124 GAGGAAAGGCTAGGTCGCAT 59.534 55.000 0.00 0.00 0.00 4.73
1472 1536 0.614979 AGAGGAAAGGCTAGGTCGCA 60.615 55.000 0.00 0.00 0.00 5.10
1473 1537 0.537653 AAGAGGAAAGGCTAGGTCGC 59.462 55.000 0.00 0.00 0.00 5.19
1474 1538 1.134670 CCAAGAGGAAAGGCTAGGTCG 60.135 57.143 0.00 0.00 36.89 4.79
1475 1539 1.407575 GCCAAGAGGAAAGGCTAGGTC 60.408 57.143 0.00 0.00 44.92 3.85
1476 1540 0.621082 GCCAAGAGGAAAGGCTAGGT 59.379 55.000 0.00 0.00 44.92 3.08
1482 1546 1.067354 GCATGTTGCCAAGAGGAAAGG 60.067 52.381 0.00 0.00 37.42 3.11
1483 1547 1.614903 TGCATGTTGCCAAGAGGAAAG 59.385 47.619 0.00 0.00 44.23 2.62
1493 1557 0.039617 TGTTAAGCGTGCATGTTGCC 60.040 50.000 7.93 0.00 44.23 4.52
1501 1565 2.346803 TCTCAAGGATGTTAAGCGTGC 58.653 47.619 0.00 0.00 0.00 5.34
1502 1566 4.690748 TCTTTCTCAAGGATGTTAAGCGTG 59.309 41.667 0.00 0.00 0.00 5.34
1503 1567 4.894784 TCTTTCTCAAGGATGTTAAGCGT 58.105 39.130 0.00 0.00 0.00 5.07
1504 1568 5.862924 TTCTTTCTCAAGGATGTTAAGCG 57.137 39.130 0.00 0.00 0.00 4.68
1543 1607 9.720769 CGTCCACCTCCAAAATATAGTTATATT 57.279 33.333 0.00 0.00 39.79 1.28
1544 1608 9.096823 TCGTCCACCTCCAAAATATAGTTATAT 57.903 33.333 0.00 0.00 0.00 0.86
1545 1609 8.481492 TCGTCCACCTCCAAAATATAGTTATA 57.519 34.615 0.00 0.00 0.00 0.98
1546 1610 7.369551 TCGTCCACCTCCAAAATATAGTTAT 57.630 36.000 0.00 0.00 0.00 1.89
1547 1611 6.795144 TCGTCCACCTCCAAAATATAGTTA 57.205 37.500 0.00 0.00 0.00 2.24
1567 1631 3.576078 TGGCATATGGGAATCTTTCGT 57.424 42.857 4.56 0.00 0.00 3.85
1568 1632 4.339247 ACTTTGGCATATGGGAATCTTTCG 59.661 41.667 4.56 0.00 0.00 3.46
1746 1814 9.820725 AGAATTCAGATGTTTGACAAAATTTGA 57.179 25.926 13.19 7.08 0.00 2.69
1773 1841 7.096884 TCGTTTGCATCTTCTAGTACTACAT 57.903 36.000 0.00 0.00 0.00 2.29
1774 1842 6.505044 TCGTTTGCATCTTCTAGTACTACA 57.495 37.500 0.00 0.00 0.00 2.74
1775 1843 7.988904 ATTCGTTTGCATCTTCTAGTACTAC 57.011 36.000 0.00 0.00 0.00 2.73
1780 1848 8.818057 GTGTATTATTCGTTTGCATCTTCTAGT 58.182 33.333 0.00 0.00 0.00 2.57
1806 2019 6.206048 TCAGAACATATCATGCATAGCAAAGG 59.794 38.462 0.00 0.00 43.62 3.11
1822 2035 5.204292 AGTGGAGCTCTACATCAGAACATA 58.796 41.667 29.18 0.00 31.12 2.29
1844 2057 2.034558 ACAGTGAAAACAATCGCCCAAG 59.965 45.455 0.00 0.00 0.00 3.61
1905 2119 6.016777 ACAAGTGAGTCTGAATTGTTCCATTC 60.017 38.462 0.00 0.00 30.18 2.67
1914 2128 4.101585 TGAGACCACAAGTGAGTCTGAATT 59.898 41.667 21.05 5.27 39.48 2.17
1922 2136 1.001406 GGGACTGAGACCACAAGTGAG 59.999 57.143 2.97 0.00 0.00 3.51
1927 2141 1.152419 TCGGGGACTGAGACCACAA 60.152 57.895 3.79 0.00 39.80 3.33
2010 2224 4.785346 AGAGGAACTATGTTGGATGCAT 57.215 40.909 0.00 0.00 41.55 3.96
2011 2225 4.517285 GAAGAGGAACTATGTTGGATGCA 58.483 43.478 0.00 0.00 41.55 3.96
2012 2226 3.879892 GGAAGAGGAACTATGTTGGATGC 59.120 47.826 0.00 0.00 41.55 3.91
2013 2227 4.878397 GTGGAAGAGGAACTATGTTGGATG 59.122 45.833 0.00 0.00 41.55 3.51
2014 2228 4.536090 TGTGGAAGAGGAACTATGTTGGAT 59.464 41.667 0.00 0.00 41.55 3.41
2015 2229 3.907474 TGTGGAAGAGGAACTATGTTGGA 59.093 43.478 0.00 0.00 41.55 3.53
2143 2357 3.270877 CACCTACTATGTCTGCCCAAAC 58.729 50.000 0.00 0.00 0.00 2.93
2181 2395 2.030274 GTCATGTGTTGTAACCAAGCCC 60.030 50.000 0.00 0.00 0.00 5.19
2183 2397 4.994852 TCTAGTCATGTGTTGTAACCAAGC 59.005 41.667 0.00 0.00 0.00 4.01
2186 2400 4.278919 TCGTCTAGTCATGTGTTGTAACCA 59.721 41.667 0.00 0.00 0.00 3.67
2206 2421 0.249489 GAGCAAGACACACCAGTCGT 60.249 55.000 0.00 0.00 43.24 4.34
2207 2422 0.249447 TGAGCAAGACACACCAGTCG 60.249 55.000 0.00 0.00 43.24 4.18
2208 2423 1.802960 CATGAGCAAGACACACCAGTC 59.197 52.381 0.00 0.00 38.81 3.51
2209 2424 1.888215 CATGAGCAAGACACACCAGT 58.112 50.000 0.00 0.00 0.00 4.00
2210 2425 0.520404 GCATGAGCAAGACACACCAG 59.480 55.000 0.00 0.00 41.58 4.00
2211 2426 0.109153 AGCATGAGCAAGACACACCA 59.891 50.000 0.00 0.00 45.49 4.17
2212 2427 0.801251 GAGCATGAGCAAGACACACC 59.199 55.000 0.00 0.00 45.49 4.16
2213 2428 1.463831 CAGAGCATGAGCAAGACACAC 59.536 52.381 0.00 0.00 45.49 3.82
2277 2492 4.511527 TCTCTTTGATGCTCAGATTGGTC 58.488 43.478 0.00 0.00 0.00 4.02
2289 2504 3.425892 CGAAAGCTTGGCTCTCTTTGATG 60.426 47.826 0.00 0.00 38.25 3.07
2391 2606 2.352814 CCGTCTCATCCTTTTCACGTCT 60.353 50.000 0.00 0.00 0.00 4.18
2397 2612 4.755411 TGATGTACCGTCTCATCCTTTTC 58.245 43.478 11.58 0.00 39.47 2.29
2400 2615 3.513912 TGTTGATGTACCGTCTCATCCTT 59.486 43.478 11.58 0.00 39.47 3.36
2421 2636 4.741321 AAGGCATAATGGTTCATGGTTG 57.259 40.909 0.00 0.00 0.00 3.77
2455 2670 4.818534 TTGAGCAGTGAATGAAGAACAC 57.181 40.909 0.00 0.00 35.15 3.32
2478 2693 5.559148 AATTGGCAAACAAGGGTTTATGA 57.441 34.783 3.01 0.00 45.18 2.15
2532 2747 2.762234 CCTCTTCCTCGACCGTCGG 61.762 68.421 20.35 10.48 40.88 4.79
2535 2750 1.596895 GCTTCCTCTTCCTCGACCGT 61.597 60.000 0.00 0.00 0.00 4.83
2597 2812 1.582937 CTAGTCAGTACGCACGCCG 60.583 63.158 0.00 0.00 44.21 6.46
2647 2862 1.075482 CCAGTCACCCACAAGCCAT 59.925 57.895 0.00 0.00 0.00 4.40
2650 2865 0.886490 CAGTCCAGTCACCCACAAGC 60.886 60.000 0.00 0.00 0.00 4.01
2657 2872 0.886490 CAACCTGCAGTCCAGTCACC 60.886 60.000 13.81 0.00 40.06 4.02
2658 2873 0.106708 TCAACCTGCAGTCCAGTCAC 59.893 55.000 13.81 0.00 40.06 3.67
2661 2876 1.002888 CTGATCAACCTGCAGTCCAGT 59.997 52.381 13.81 0.00 40.06 4.00
2665 2880 1.367659 GAGCTGATCAACCTGCAGTC 58.632 55.000 13.81 3.48 34.07 3.51
2666 2881 0.035630 GGAGCTGATCAACCTGCAGT 60.036 55.000 13.81 0.00 34.07 4.40
2675 2890 2.038813 TCACCCCGGAGCTGATCA 59.961 61.111 0.73 0.00 0.00 2.92
3011 3226 2.493973 CTGTGCTCGAGGCTCTCC 59.506 66.667 15.58 1.04 42.39 3.71
3135 3354 3.025619 CGTAGGTAGGTACGCGGG 58.974 66.667 12.47 0.00 39.40 6.13
3157 3376 5.833406 TTTCATCAGCTCAAACACTTTGA 57.167 34.783 0.00 0.00 46.68 2.69
3158 3377 6.038356 AGTTTTCATCAGCTCAAACACTTTG 58.962 36.000 0.00 0.00 41.96 2.77
3159 3378 6.096001 AGAGTTTTCATCAGCTCAAACACTTT 59.904 34.615 0.00 0.00 29.19 2.66
3251 3470 5.324784 TCCATTACATAGCTATAGGCACG 57.675 43.478 5.77 0.00 44.79 5.34
3302 3522 4.883083 TCACAGTTAACTGACATGGTCTC 58.117 43.478 36.14 0.00 46.59 3.36
3335 3563 3.625764 TGTAAATGATGAAGCTTACCGCC 59.374 43.478 0.00 0.00 40.39 6.13
3337 3565 6.851222 ATCTGTAAATGATGAAGCTTACCG 57.149 37.500 0.00 0.00 0.00 4.02
3346 3574 6.312672 CACCGTGTGTAATCTGTAAATGATGA 59.687 38.462 0.00 0.00 0.00 2.92
3347 3575 6.477742 CACCGTGTGTAATCTGTAAATGATG 58.522 40.000 0.00 0.00 0.00 3.07
3348 3576 5.064707 GCACCGTGTGTAATCTGTAAATGAT 59.935 40.000 0.00 0.00 35.75 2.45
3402 3631 2.431954 TCCAAAACAACCCACCGTAA 57.568 45.000 0.00 0.00 0.00 3.18
3411 3640 0.958822 AGCCGTCCATCCAAAACAAC 59.041 50.000 0.00 0.00 0.00 3.32
3462 3691 1.410517 GCCGAGATGGATGACAGAGAA 59.589 52.381 0.00 0.00 42.00 2.87
3465 3694 0.687427 TGGCCGAGATGGATGACAGA 60.687 55.000 0.00 0.00 42.00 3.41
3966 4195 3.853330 CGGGTGATGAAGCGCACG 61.853 66.667 11.47 0.00 38.93 5.34
4002 4231 3.818787 CTGGCAAGGATGTGGCGC 61.819 66.667 0.00 0.00 46.67 6.53
4041 4270 4.386049 AGTGTTTGATCGATGTTTCTCGTC 59.614 41.667 0.54 0.00 39.62 4.20
4042 4271 4.307432 AGTGTTTGATCGATGTTTCTCGT 58.693 39.130 0.54 0.00 39.62 4.18
4043 4272 4.910746 AGTGTTTGATCGATGTTTCTCG 57.089 40.909 0.54 0.00 39.99 4.04
4044 4273 4.848299 GCAAGTGTTTGATCGATGTTTCTC 59.152 41.667 0.54 0.00 36.36 2.87
4047 4276 3.554524 CGCAAGTGTTTGATCGATGTTT 58.445 40.909 0.54 0.00 36.36 2.83
4054 4288 0.452784 GACGCCGCAAGTGTTTGATC 60.453 55.000 0.00 0.00 40.03 2.92
4064 4298 2.593148 ACAATGGTGACGCCGCAA 60.593 55.556 0.00 0.00 41.21 4.85
4113 4347 0.100682 CTCATCCGAGGGTACGTGTG 59.899 60.000 0.00 0.00 35.44 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.