Multiple sequence alignment - TraesCS6A01G154100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G154100 chr6A 100.000 5813 0 0 1 5813 142779227 142785039 0.000000e+00 10735.0
1 TraesCS6A01G154100 chr6A 86.364 66 7 1 330 393 412264978 412264913 2.910000e-08 71.3
2 TraesCS6A01G154100 chr6B 90.370 3053 181 43 1966 4995 203920515 203923477 0.000000e+00 3904.0
3 TraesCS6A01G154100 chr6B 93.333 630 27 11 5184 5813 203923507 203924121 0.000000e+00 917.0
4 TraesCS6A01G154100 chr6B 83.914 746 62 36 621 1328 203919536 203920261 0.000000e+00 660.0
5 TraesCS6A01G154100 chr6B 85.106 517 57 6 3 510 203913029 203913534 1.440000e-140 510.0
6 TraesCS6A01G154100 chr6B 84.848 396 40 13 1333 1717 688597179 688597565 1.180000e-101 381.0
7 TraesCS6A01G154100 chr6B 95.139 144 7 0 1824 1967 203920327 203920470 1.630000e-55 228.0
8 TraesCS6A01G154100 chr6B 93.000 100 6 1 4993 5091 8925531 8925432 1.690000e-30 145.0
9 TraesCS6A01G154100 chr6D 91.405 1815 103 27 3194 4995 114231307 114233081 0.000000e+00 2438.0
10 TraesCS6A01G154100 chr6D 92.491 1425 87 12 1774 3187 114229848 114231263 0.000000e+00 2021.0
11 TraesCS6A01G154100 chr6D 90.353 850 51 18 948 1775 114228875 114229715 0.000000e+00 1086.0
12 TraesCS6A01G154100 chr6D 93.651 630 25 12 5184 5813 114233111 114233725 0.000000e+00 928.0
13 TraesCS6A01G154100 chr6D 83.721 602 75 14 3 598 114227793 114228377 1.100000e-151 547.0
14 TraesCS6A01G154100 chr6D 91.781 219 11 4 687 901 114228652 114228867 1.220000e-76 298.0
15 TraesCS6A01G154100 chr6D 87.097 62 6 1 334 393 297637787 297637726 1.050000e-07 69.4
16 TraesCS6A01G154100 chr6D 95.122 41 0 1 1816 1856 114229843 114229881 4.860000e-06 63.9
17 TraesCS6A01G154100 chr6D 85.965 57 8 0 357 413 281043598 281043542 1.750000e-05 62.1
18 TraesCS6A01G154100 chr6D 90.698 43 3 1 3682 3723 283329752 283329794 8.140000e-04 56.5
19 TraesCS6A01G154100 chr6D 94.286 35 2 0 3690 3724 64392772 64392806 3.000000e-03 54.7
20 TraesCS6A01G154100 chr1D 85.714 371 44 8 1356 1718 432199157 432199526 3.290000e-102 383.0
21 TraesCS6A01G154100 chr1D 83.791 364 52 6 1356 1717 298501187 298500829 7.220000e-89 339.0
22 TraesCS6A01G154100 chr3B 84.022 363 46 11 1365 1718 597820629 597820988 7.220000e-89 339.0
23 TraesCS6A01G154100 chr3B 94.737 95 5 0 4992 5086 642815940 642815846 1.310000e-31 148.0
24 TraesCS6A01G154100 chr2B 83.646 373 46 7 1356 1718 520201876 520201509 2.600000e-88 337.0
25 TraesCS6A01G154100 chr2B 89.873 79 8 0 1010 1088 369808732 369808654 1.030000e-17 102.0
26 TraesCS6A01G154100 chr2B 85.507 69 7 2 327 393 282633608 282633675 1.050000e-07 69.4
27 TraesCS6A01G154100 chr2B 87.500 56 7 0 340 395 252648617 252648672 1.350000e-06 65.8
28 TraesCS6A01G154100 chr3A 82.759 377 49 9 1357 1721 115838688 115839060 7.270000e-84 322.0
29 TraesCS6A01G154100 chr3A 82.447 376 50 9 1357 1721 115389078 115389448 1.220000e-81 315.0
30 TraesCS6A01G154100 chr2D 82.514 366 58 4 1356 1717 23079965 23079602 3.380000e-82 316.0
31 TraesCS6A01G154100 chr2D 100.000 29 0 0 3696 3724 255693553 255693525 3.000000e-03 54.7
32 TraesCS6A01G154100 chr7A 82.415 381 47 9 1356 1718 589824363 589824741 1.220000e-81 315.0
33 TraesCS6A01G154100 chr7A 93.000 100 6 1 4989 5088 705701621 705701523 1.690000e-30 145.0
34 TraesCS6A01G154100 chr7A 91.026 78 7 0 1010 1087 679927431 679927354 7.970000e-19 106.0
35 TraesCS6A01G154100 chr5B 76.974 304 60 4 24 325 255549705 255549410 1.300000e-36 165.0
36 TraesCS6A01G154100 chr4B 74.677 387 91 7 58 441 649696986 649696604 1.300000e-36 165.0
37 TraesCS6A01G154100 chr7B 96.809 94 1 2 4992 5084 208276800 208276708 7.800000e-34 156.0
38 TraesCS6A01G154100 chr7B 92.381 105 7 1 4984 5088 440325703 440325600 1.310000e-31 148.0
39 TraesCS6A01G154100 chr7B 91.139 79 7 0 1010 1088 660362506 660362428 2.210000e-19 108.0
40 TraesCS6A01G154100 chr7B 89.873 79 8 0 1010 1088 699156223 699156145 1.030000e-17 102.0
41 TraesCS6A01G154100 chr7D 94.898 98 4 1 4998 5095 506141455 506141359 1.010000e-32 152.0
42 TraesCS6A01G154100 chr7D 89.873 79 8 0 1010 1088 588068112 588068034 1.030000e-17 102.0
43 TraesCS6A01G154100 chr7D 88.333 60 6 1 567 626 461389230 461389288 2.910000e-08 71.3
44 TraesCS6A01G154100 chr7D 86.885 61 8 0 333 393 159941478 159941418 1.050000e-07 69.4
45 TraesCS6A01G154100 chr3D 95.699 93 3 1 4996 5088 509255200 509255109 1.310000e-31 148.0
46 TraesCS6A01G154100 chr3D 86.667 75 10 0 426 500 452407751 452407825 3.730000e-12 84.2
47 TraesCS6A01G154100 chr3D 85.135 74 11 0 340 413 231238042 231238115 6.250000e-10 76.8
48 TraesCS6A01G154100 chr2A 93.137 102 6 1 5000 5100 10843215 10843316 1.310000e-31 148.0
49 TraesCS6A01G154100 chr1B 93.069 101 5 2 4992 5090 53076215 53076315 4.690000e-31 147.0
50 TraesCS6A01G154100 chr5A 86.364 66 7 1 330 393 519598218 519598153 2.910000e-08 71.3
51 TraesCS6A01G154100 chr5D 90.909 44 3 1 3682 3724 204786819 204786862 2.260000e-04 58.4
52 TraesCS6A01G154100 chr1A 88.889 45 5 0 3689 3733 85194866 85194822 8.140000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G154100 chr6A 142779227 142785039 5812 False 10735.000000 10735 100.000000 1 5813 1 chr6A.!!$F1 5812
1 TraesCS6A01G154100 chr6B 203919536 203924121 4585 False 1427.250000 3904 90.689000 621 5813 4 chr6B.!!$F3 5192
2 TraesCS6A01G154100 chr6B 203913029 203913534 505 False 510.000000 510 85.106000 3 510 1 chr6B.!!$F1 507
3 TraesCS6A01G154100 chr6D 114227793 114233725 5932 False 1054.557143 2438 91.217714 3 5813 7 chr6D.!!$F3 5810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 444 0.036952 CTCTGGAGGAAAAGAGCGCA 60.037 55.0 11.47 0.00 33.98 6.09 F
1361 1623 0.036732 GGAGCCCTCACATGTGAACA 59.963 55.0 27.63 7.74 39.39 3.18 F
1439 1711 0.251354 AGATGCTCCTGTGCGTGAAT 59.749 50.0 0.00 0.00 35.36 2.57 F
2693 3168 0.253044 GCTTATGGGCTGTCAGGTCA 59.747 55.0 1.14 0.00 0.00 4.02 F
3508 4040 0.178950 AGGAGACTGGTGAGTGCAGA 60.179 55.0 0.00 0.00 41.13 4.26 F
3930 4462 0.097674 CTTGCACTCGCTATTGTGGC 59.902 55.0 0.00 0.00 39.64 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1669 1952 0.260816 ATGAGCCCAGGCATGAACAT 59.739 50.0 12.03 5.63 44.88 2.71 R
2300 2769 0.460635 CGGGAAATGCCATTGCCTTG 60.461 55.0 14.24 3.83 38.12 3.61 R
3414 3946 0.107165 GGGGGTGGCTGTAGAACATC 60.107 60.0 0.00 0.00 0.00 3.06 R
3521 4053 0.040067 GCTGTGGCACTTGCACTTAC 60.040 55.0 23.68 0.00 44.36 2.34 R
4614 5158 0.179018 GCTGGGGCTGGTAGTATTGG 60.179 60.0 0.00 0.00 35.22 3.16 R
5509 6061 1.073964 CCAGAGACATGTCGTTGCTG 58.926 55.0 19.85 21.63 34.09 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 4.240103 CGATGAGGCCATGGCGGA 62.240 66.667 29.90 16.46 43.06 5.54
96 97 1.296392 CGGATGTGGTGCAAGGAGA 59.704 57.895 0.00 0.00 0.00 3.71
100 101 2.079925 GATGTGGTGCAAGGAGAAGAC 58.920 52.381 0.00 0.00 0.00 3.01
162 165 3.054655 ACGCTTAAATAGTGGGTGGATGT 60.055 43.478 0.00 0.00 38.74 3.06
181 184 0.827925 TGAGGCGTCAACCAGAGAGT 60.828 55.000 6.64 0.00 0.00 3.24
192 195 6.238374 CGTCAACCAGAGAGTTGTTTAATGTT 60.238 38.462 4.50 0.00 45.90 2.71
197 200 5.334105 CCAGAGAGTTGTTTAATGTTGGTCG 60.334 44.000 0.00 0.00 0.00 4.79
236 239 2.169789 CGCTCGGAATGCCAGAGTG 61.170 63.158 11.70 10.72 38.22 3.51
237 240 1.078848 GCTCGGAATGCCAGAGTGT 60.079 57.895 11.70 0.00 37.24 3.55
266 269 1.068610 GCACAAGCGCTGGTTTAATGA 60.069 47.619 16.72 0.00 0.00 2.57
304 308 1.816224 GGTGCCTTTTTAATGCGGAGA 59.184 47.619 0.00 0.00 0.00 3.71
321 325 2.588877 AGAAAGCGTGTGCAGCGT 60.589 55.556 11.48 0.00 46.23 5.07
323 327 4.612536 AAAGCGTGTGCAGCGTGC 62.613 61.111 11.48 3.44 46.23 5.34
365 369 0.179215 CCAACGAGACGCTTCAATGC 60.179 55.000 0.00 0.00 0.00 3.56
366 370 0.792640 CAACGAGACGCTTCAATGCT 59.207 50.000 0.00 0.00 0.00 3.79
393 397 0.318784 GTGAGAGGTCACGTTCGCTT 60.319 55.000 0.00 0.00 43.75 4.68
395 399 1.610038 TGAGAGGTCACGTTCGCTTTA 59.390 47.619 0.00 0.00 0.00 1.85
397 401 1.884579 AGAGGTCACGTTCGCTTTAGA 59.115 47.619 0.00 0.00 0.00 2.10
405 409 1.798813 CGTTCGCTTTAGACTGGCTTT 59.201 47.619 0.00 0.00 0.00 3.51
407 411 3.060895 CGTTCGCTTTAGACTGGCTTTAG 59.939 47.826 0.00 0.00 0.00 1.85
440 444 0.036952 CTCTGGAGGAAAAGAGCGCA 60.037 55.000 11.47 0.00 33.98 6.09
443 447 1.003233 GGAGGAAAAGAGCGCAGGT 60.003 57.895 11.47 0.00 46.54 4.00
461 465 1.916181 GGTGAGGGAGAGGATTTTGGA 59.084 52.381 0.00 0.00 0.00 3.53
463 467 3.716872 GGTGAGGGAGAGGATTTTGGATA 59.283 47.826 0.00 0.00 0.00 2.59
512 523 2.893398 GGTTCTGACTCCCGCGAT 59.107 61.111 8.23 0.00 0.00 4.58
513 524 1.227002 GGTTCTGACTCCCGCGATC 60.227 63.158 8.23 0.00 0.00 3.69
514 525 1.511305 GTTCTGACTCCCGCGATCA 59.489 57.895 8.23 4.84 0.00 2.92
517 528 2.362503 TGACTCCCGCGATCACCT 60.363 61.111 8.23 0.00 0.00 4.00
518 529 2.105128 GACTCCCGCGATCACCTG 59.895 66.667 8.23 0.00 0.00 4.00
521 532 1.079127 CTCCCGCGATCACCTGTTT 60.079 57.895 8.23 0.00 0.00 2.83
522 533 1.361668 CTCCCGCGATCACCTGTTTG 61.362 60.000 8.23 0.00 0.00 2.93
523 534 1.375396 CCCGCGATCACCTGTTTGA 60.375 57.895 8.23 0.00 0.00 2.69
525 536 1.086696 CCGCGATCACCTGTTTGATT 58.913 50.000 8.23 0.00 36.30 2.57
527 538 2.002586 CGCGATCACCTGTTTGATTCT 58.997 47.619 0.00 0.00 36.30 2.40
529 540 2.096496 GCGATCACCTGTTTGATTCTGG 59.904 50.000 0.00 0.00 36.30 3.86
532 543 4.142816 CGATCACCTGTTTGATTCTGGTTC 60.143 45.833 0.00 0.00 36.30 3.62
533 544 4.163441 TCACCTGTTTGATTCTGGTTCA 57.837 40.909 0.00 0.00 35.50 3.18
534 545 4.728772 TCACCTGTTTGATTCTGGTTCAT 58.271 39.130 0.00 0.00 35.50 2.57
536 547 4.520111 CACCTGTTTGATTCTGGTTCATGA 59.480 41.667 0.00 0.00 35.50 3.07
537 548 5.009911 CACCTGTTTGATTCTGGTTCATGAA 59.990 40.000 3.38 3.38 35.50 2.57
538 549 5.598005 ACCTGTTTGATTCTGGTTCATGAAA 59.402 36.000 10.35 0.00 34.34 2.69
562 573 2.049802 GACGTTCGAACCGGCTCA 60.050 61.111 22.07 0.00 0.00 4.26
563 574 1.445582 GACGTTCGAACCGGCTCAT 60.446 57.895 22.07 1.91 0.00 2.90
567 578 1.369625 GTTCGAACCGGCTCATGAAT 58.630 50.000 17.68 0.00 0.00 2.57
568 579 1.062587 GTTCGAACCGGCTCATGAATG 59.937 52.381 17.68 0.00 0.00 2.67
577 588 4.161189 ACCGGCTCATGAATGGATATAGAG 59.839 45.833 0.00 0.00 0.00 2.43
580 591 4.450053 GCTCATGAATGGATATAGAGCCC 58.550 47.826 0.00 0.00 40.68 5.19
581 592 4.080695 GCTCATGAATGGATATAGAGCCCA 60.081 45.833 0.00 0.00 40.68 5.36
582 593 5.426504 CTCATGAATGGATATAGAGCCCAC 58.573 45.833 0.00 0.00 32.07 4.61
598 609 0.319469 CCACGTTGGATGGCAAAACC 60.319 55.000 0.00 0.00 40.96 3.27
599 610 0.319469 CACGTTGGATGGCAAAACCC 60.319 55.000 0.00 0.00 37.83 4.11
604 615 2.874751 GATGGCAAAACCCGTCCG 59.125 61.111 0.00 0.00 37.83 4.79
605 616 1.673009 GATGGCAAAACCCGTCCGA 60.673 57.895 0.00 0.00 37.83 4.55
606 617 1.228306 ATGGCAAAACCCGTCCGAA 60.228 52.632 0.00 0.00 37.83 4.30
607 618 1.520600 ATGGCAAAACCCGTCCGAAC 61.521 55.000 0.00 0.00 37.83 3.95
608 619 2.640989 GCAAAACCCGTCCGAACC 59.359 61.111 0.00 0.00 0.00 3.62
609 620 2.940561 CAAAACCCGTCCGAACCG 59.059 61.111 0.00 0.00 0.00 4.44
610 621 1.888638 CAAAACCCGTCCGAACCGT 60.889 57.895 0.00 0.00 0.00 4.83
611 622 0.599728 CAAAACCCGTCCGAACCGTA 60.600 55.000 0.00 0.00 0.00 4.02
612 623 0.321346 AAAACCCGTCCGAACCGTAT 59.679 50.000 0.00 0.00 0.00 3.06
613 624 0.390209 AAACCCGTCCGAACCGTATG 60.390 55.000 0.00 0.00 0.00 2.39
614 625 2.105528 CCCGTCCGAACCGTATGG 59.894 66.667 0.00 0.00 42.84 2.74
626 637 2.105984 CGTATGGTCCGGACGGTTA 58.894 57.895 27.68 15.79 36.47 2.85
637 648 4.747529 ACGGTTACGGGCGCTTCC 62.748 66.667 7.64 0.00 46.48 3.46
640 651 2.884207 GTTACGGGCGCTTCCTCG 60.884 66.667 7.64 6.72 35.52 4.63
646 657 2.574399 GGCGCTTCCTCGTCTTCT 59.426 61.111 7.64 0.00 0.00 2.85
647 658 1.079750 GGCGCTTCCTCGTCTTCTT 60.080 57.895 7.64 0.00 0.00 2.52
648 659 1.079317 GGCGCTTCCTCGTCTTCTTC 61.079 60.000 7.64 0.00 0.00 2.87
657 668 2.094442 CCTCGTCTTCTTCTTGGTCCTC 60.094 54.545 0.00 0.00 0.00 3.71
660 671 1.066787 GTCTTCTTCTTGGTCCTCCCG 60.067 57.143 0.00 0.00 35.15 5.14
670 681 1.588082 GTCCTCCCGTGCGTTTCTA 59.412 57.895 0.00 0.00 0.00 2.10
693 910 3.135056 GAGCTCCGCGGTAATCGGT 62.135 63.158 27.15 14.53 46.49 4.69
707 924 2.401017 ATCGGTCACATACGATCACG 57.599 50.000 0.00 0.00 45.76 4.35
728 951 1.351017 ACGTCACCACCCATGATTCTT 59.649 47.619 0.00 0.00 0.00 2.52
758 981 6.092122 TCTCATCGTGCTCAAATTATTCGTTT 59.908 34.615 0.00 0.00 0.00 3.60
786 1009 4.503314 GTAGGGGCGAACGGACGG 62.503 72.222 5.76 0.00 0.00 4.79
799 1022 4.521062 GACGGCAGCTGGATCGCT 62.521 66.667 17.12 0.00 41.90 4.93
824 1047 2.501128 GCACCGATGGAGCTAGCA 59.499 61.111 18.83 0.00 36.40 3.49
825 1048 1.593750 GCACCGATGGAGCTAGCAG 60.594 63.158 18.83 0.60 36.40 4.24
826 1049 1.593750 CACCGATGGAGCTAGCAGC 60.594 63.158 18.83 8.33 42.84 5.25
961 1200 4.761058 AGCGAGCGAGGGAGGGAA 62.761 66.667 0.00 0.00 0.00 3.97
988 1227 4.109675 GGGGGTGATCGTGGGGTG 62.110 72.222 0.00 0.00 0.00 4.61
1117 1369 0.257039 GCATGGATGGGTCACTCCTT 59.743 55.000 0.00 0.00 36.25 3.36
1118 1370 2.020694 GCATGGATGGGTCACTCCTTG 61.021 57.143 0.00 0.00 38.87 3.61
1151 1403 9.643693 ATTAATTTCTCTTTTCGATGTGCATTT 57.356 25.926 0.00 0.00 0.00 2.32
1201 1461 0.465287 CTGGCTTTGCTTGGGTTTGT 59.535 50.000 0.00 0.00 0.00 2.83
1243 1503 1.301087 CAAGGCGACCAACCACGTA 60.301 57.895 0.00 0.00 0.00 3.57
1341 1603 4.270325 CGGTTTCTCTCGATAATTCAACCC 59.730 45.833 0.00 0.00 30.54 4.11
1352 1614 2.198304 ATTCAACCCGGAGCCCTCAC 62.198 60.000 0.73 0.00 0.00 3.51
1353 1615 3.636231 CAACCCGGAGCCCTCACA 61.636 66.667 0.73 0.00 0.00 3.58
1356 1618 3.402681 CCCGGAGCCCTCACATGT 61.403 66.667 0.73 0.00 0.00 3.21
1358 1620 2.659063 CCGGAGCCCTCACATGTGA 61.659 63.158 26.33 26.33 38.06 3.58
1359 1621 1.296392 CGGAGCCCTCACATGTGAA 59.704 57.895 27.63 12.88 39.39 3.18
1361 1623 0.036732 GGAGCCCTCACATGTGAACA 59.963 55.000 27.63 7.74 39.39 3.18
1439 1711 0.251354 AGATGCTCCTGTGCGTGAAT 59.749 50.000 0.00 0.00 35.36 2.57
1471 1743 7.429051 GCAAAATTTTGTGAAGTTTGGACATTC 59.571 33.333 27.13 5.40 40.24 2.67
1528 1800 6.833839 CATGAACAATGCGATTTCCAAAAAT 58.166 32.000 0.00 0.00 37.80 1.82
1529 1801 6.857777 TGAACAATGCGATTTCCAAAAATT 57.142 29.167 0.00 0.00 35.21 1.82
1531 1803 7.351223 TGAACAATGCGATTTCCAAAAATTTC 58.649 30.769 0.00 0.00 35.21 2.17
1532 1804 7.226325 TGAACAATGCGATTTCCAAAAATTTCT 59.774 29.630 0.00 0.00 35.21 2.52
1533 1805 7.120789 ACAATGCGATTTCCAAAAATTTCTC 57.879 32.000 0.00 0.00 35.21 2.87
1534 1806 6.705381 ACAATGCGATTTCCAAAAATTTCTCA 59.295 30.769 0.00 0.00 35.21 3.27
1536 1808 6.523676 TGCGATTTCCAAAAATTTCTCAAC 57.476 33.333 0.00 0.00 35.21 3.18
1541 1813 7.599998 CGATTTCCAAAAATTTCTCAACCATCT 59.400 33.333 0.00 0.00 35.21 2.90
1558 1830 5.308014 ACCATCTGAAATTTGCCCTTTTTC 58.692 37.500 0.00 0.00 0.00 2.29
1566 1840 0.951558 TTGCCCTTTTTCACGAGCTC 59.048 50.000 2.73 2.73 0.00 4.09
1568 1842 0.889186 GCCCTTTTTCACGAGCTCCA 60.889 55.000 8.47 0.00 0.00 3.86
1570 1844 1.593196 CCTTTTTCACGAGCTCCACA 58.407 50.000 8.47 0.00 0.00 4.17
1600 1874 7.513190 TCAAACTTCACAAAATTTTACACGG 57.487 32.000 2.44 0.00 0.00 4.94
1602 1876 7.486551 TCAAACTTCACAAAATTTTACACGGAG 59.513 33.333 2.44 0.00 0.00 4.63
1604 1878 6.859017 ACTTCACAAAATTTTACACGGAGTT 58.141 32.000 2.44 0.00 41.61 3.01
1605 1879 7.987649 ACTTCACAAAATTTTACACGGAGTTA 58.012 30.769 2.44 0.00 41.61 2.24
1608 1882 6.906143 TCACAAAATTTTACACGGAGTTAACG 59.094 34.615 2.44 0.00 41.61 3.18
1615 1889 0.319211 CACGGAGTTAACGCACAGGA 60.319 55.000 11.59 0.00 41.61 3.86
1616 1890 0.606604 ACGGAGTTAACGCACAGGAT 59.393 50.000 11.59 0.00 37.78 3.24
1617 1891 1.278238 CGGAGTTAACGCACAGGATC 58.722 55.000 11.59 0.00 0.00 3.36
1632 1906 2.821378 CAGGATCATCTTGCACCACAAA 59.179 45.455 0.00 0.00 37.96 2.83
1680 1963 7.658525 TTAAATCATGGTAATGTTCATGCCT 57.341 32.000 0.00 0.00 40.20 4.75
1681 1964 5.524971 AATCATGGTAATGTTCATGCCTG 57.475 39.130 0.00 0.00 40.20 4.85
1683 1966 2.142356 TGGTAATGTTCATGCCTGGG 57.858 50.000 0.00 0.00 0.00 4.45
1775 2058 7.014615 AGGTTCATCTTGTAAGCTTGTCATTTT 59.985 33.333 9.86 0.00 29.48 1.82
1943 2362 4.293415 CAAGACAAAGAATTGGACAGTGC 58.707 43.478 0.00 0.00 41.01 4.40
1956 2375 0.597637 ACAGTGCGTGTCCTTTCTCG 60.598 55.000 0.00 0.00 31.90 4.04
1958 2377 0.597637 AGTGCGTGTCCTTTCTCGTG 60.598 55.000 0.00 0.00 0.00 4.35
1986 2451 7.398289 TCCTATCAATTTCCTCATCTTCCAT 57.602 36.000 0.00 0.00 0.00 3.41
1987 2452 7.819500 TCCTATCAATTTCCTCATCTTCCATT 58.180 34.615 0.00 0.00 0.00 3.16
2008 2474 6.989169 CCATTCTCATGGTCTAGGTTAGAAAG 59.011 42.308 0.00 0.00 44.81 2.62
2009 2475 7.365117 CCATTCTCATGGTCTAGGTTAGAAAGT 60.365 40.741 0.00 0.00 44.81 2.66
2022 2488 7.198306 AGGTTAGAAAGTAAACCATGTTTCG 57.802 36.000 6.97 0.00 46.29 3.46
2141 2607 2.838202 AGGCGATCCTACTTTCAAGGAA 59.162 45.455 0.00 0.00 46.06 3.36
2187 2653 7.866003 AAAAGAAACCTTTTGCACATGGCGA 62.866 40.000 4.75 0.00 41.02 5.54
2200 2666 2.428171 ACATGGCGAATTTCAAGGATGG 59.572 45.455 0.00 0.00 0.00 3.51
2248 2717 0.627986 ATGCCTCCTTTTCCTCCCAG 59.372 55.000 0.00 0.00 0.00 4.45
2268 2737 4.144297 CAGGAACAGGGAAAAAGATGTGA 58.856 43.478 0.00 0.00 0.00 3.58
2300 2769 3.152341 CATCAATGAGGCAAGATACCCC 58.848 50.000 0.00 0.00 0.00 4.95
2324 2799 1.136695 GCAATGGCATTTCCCGATTCA 59.863 47.619 10.65 0.00 40.72 2.57
2326 2801 3.005684 GCAATGGCATTTCCCGATTCATA 59.994 43.478 10.65 0.00 40.72 2.15
2342 2817 6.801539 GATTCATAATCGGTAGAAATGGCA 57.198 37.500 0.00 0.00 0.00 4.92
2349 2824 2.039216 TCGGTAGAAATGGCACCTCAAA 59.961 45.455 0.00 0.00 0.00 2.69
2375 2850 4.437682 TCACCTTGTTCTTGATCTTGGT 57.562 40.909 0.00 0.00 0.00 3.67
2427 2902 2.498726 GCGCTCTTCCTGGAGGAG 59.501 66.667 26.59 26.59 46.36 3.69
2433 2908 3.077556 TTCCTGGAGGAGCGGCTC 61.078 66.667 21.57 21.57 46.36 4.70
2543 3018 4.520846 GCAATCGTGGCGGCGAAG 62.521 66.667 12.98 0.00 44.38 3.79
2552 3027 0.526524 TGGCGGCGAAGTTTTGTTTG 60.527 50.000 12.98 0.00 0.00 2.93
2571 3046 2.274645 TTTGCCTTGTGCGGATGGG 61.275 57.895 0.00 0.00 45.60 4.00
2618 3093 2.426024 GCACATAGTAGAACCAGGACGA 59.574 50.000 0.00 0.00 0.00 4.20
2626 3101 1.002134 AACCAGGACGATGCCTTGG 60.002 57.895 0.00 0.00 35.66 3.61
2693 3168 0.253044 GCTTATGGGCTGTCAGGTCA 59.747 55.000 1.14 0.00 0.00 4.02
2704 3179 0.901124 GTCAGGTCAGATCACTGCCT 59.099 55.000 0.00 0.00 44.81 4.75
2723 3198 2.426024 CCTTGTTACGCTACTGGCTCTA 59.574 50.000 0.00 0.00 39.13 2.43
2788 3263 4.479619 CTGAAGGTTTAGCATGCTCAAAC 58.520 43.478 26.57 26.97 0.00 2.93
2794 3269 4.095036 GGTTTAGCATGCTCAAACTACCTC 59.905 45.833 30.16 19.72 33.62 3.85
2864 3340 4.092675 ACAAAGGTTGTCGTTTGCATTTTG 59.907 37.500 11.49 0.00 46.66 2.44
2887 3363 6.880484 TGCGAGGTAATATTTGTTCTAGGAA 58.120 36.000 0.00 0.00 0.00 3.36
2898 3374 7.588497 ATTTGTTCTAGGAAATCTTATGGCC 57.412 36.000 0.00 0.00 0.00 5.36
2939 3419 4.321304 GGCTTTGGAGGAGAGCTTTAAAAC 60.321 45.833 0.00 0.00 36.66 2.43
2959 3439 9.741647 TTAAAACATATTGCGCAATCAATGATA 57.258 25.926 35.52 25.42 37.27 2.15
3008 3488 8.915654 GGTAAAGTGATTTTTCATGACATTGTC 58.084 33.333 9.93 9.93 0.00 3.18
3009 3489 9.462174 GTAAAGTGATTTTTCATGACATTGTCA 57.538 29.630 21.05 21.05 46.90 3.58
3079 3572 4.655762 TGGTATGATCCAGTTCTTCGAG 57.344 45.455 0.00 0.00 33.19 4.04
3081 3574 4.339530 TGGTATGATCCAGTTCTTCGAGAG 59.660 45.833 0.00 0.00 33.19 3.20
3107 3600 4.158579 CGAGGTATGATGCTATCAAGGCTA 59.841 45.833 0.00 0.00 43.50 3.93
3149 3642 2.502947 AGCATGCAGGTCTGTCATCTTA 59.497 45.455 21.98 0.00 0.00 2.10
3176 3669 9.853555 TTTATGCCAAATTTGTACTCTGTTATG 57.146 29.630 16.73 0.00 0.00 1.90
3265 3797 2.303890 TCTGCAAGGATCTTGAGCTTGA 59.696 45.455 11.35 4.57 0.00 3.02
3268 3800 2.161211 GCAAGGATCTTGAGCTTGACAC 59.839 50.000 11.35 0.00 0.00 3.67
3283 3815 3.469008 TGACACGACATTCCAGTTTCT 57.531 42.857 0.00 0.00 0.00 2.52
3299 3831 5.465935 CAGTTTCTTACTCTCAGACAGGTC 58.534 45.833 0.00 0.00 33.85 3.85
3316 3848 1.486726 GGTCGGTTCCTCATCATCCTT 59.513 52.381 0.00 0.00 0.00 3.36
3320 3852 2.169352 CGGTTCCTCATCATCCTTCTGT 59.831 50.000 0.00 0.00 0.00 3.41
3326 3858 5.462240 TCCTCATCATCCTTCTGTACATCT 58.538 41.667 0.00 0.00 0.00 2.90
3337 3869 4.808414 TCTGTACATCTCTTCACCTTGG 57.192 45.455 0.00 0.00 0.00 3.61
3346 3878 3.454447 TCTCTTCACCTTGGTCTTGAACA 59.546 43.478 0.00 0.00 0.00 3.18
3355 3887 2.875296 TGGTCTTGAACAATGGAAGGG 58.125 47.619 0.00 0.00 0.00 3.95
3357 3889 2.558359 GGTCTTGAACAATGGAAGGGTG 59.442 50.000 0.00 0.00 0.00 4.61
3383 3915 9.545105 GAATGACTAACTTCTTCATCTCATGAT 57.455 33.333 0.00 0.00 39.39 2.45
3414 3946 0.794229 AATGTGCTTTTCATCGCGCG 60.794 50.000 26.76 26.76 39.38 6.86
3472 4004 4.323569 TGGAGGAGTACATCAGAGAAGT 57.676 45.455 0.00 0.00 0.00 3.01
3508 4040 0.178950 AGGAGACTGGTGAGTGCAGA 60.179 55.000 0.00 0.00 41.13 4.26
3521 4053 3.243873 TGAGTGCAGACCTGTTCTACAAG 60.244 47.826 0.00 0.00 28.73 3.16
3526 4058 4.344102 TGCAGACCTGTTCTACAAGTAAGT 59.656 41.667 0.00 0.00 31.12 2.24
3636 4168 1.003580 CTACAGCCAGGAAGCTCCAAA 59.996 52.381 0.00 0.00 42.61 3.28
3643 4175 2.489802 CCAGGAAGCTCCAAAAGAACCT 60.490 50.000 5.21 0.00 39.61 3.50
3644 4176 3.244911 CCAGGAAGCTCCAAAAGAACCTA 60.245 47.826 5.21 0.00 39.61 3.08
3654 4186 3.069016 CCAAAAGAACCTAAAAAGCCGGT 59.931 43.478 1.90 0.00 0.00 5.28
3655 4187 4.048504 CAAAAGAACCTAAAAAGCCGGTG 58.951 43.478 1.90 0.00 0.00 4.94
3660 4192 1.173913 CCTAAAAAGCCGGTGGAAGG 58.826 55.000 1.90 0.00 0.00 3.46
3673 4205 0.987294 TGGAAGGGGAGCAAGAAGAG 59.013 55.000 0.00 0.00 0.00 2.85
3677 4209 1.077858 GGGGAGCAAGAAGAGCCTG 60.078 63.158 0.00 0.00 0.00 4.85
3680 4212 1.304509 GGAGCAAGAAGAGCCTGCAC 61.305 60.000 0.00 0.00 0.00 4.57
3684 4216 1.303155 AAGAAGAGCCTGCACAGCC 60.303 57.895 0.34 0.00 0.00 4.85
3697 4229 1.679139 CACAGCCTGAACAAGAACCA 58.321 50.000 0.00 0.00 0.00 3.67
3699 4231 1.490490 ACAGCCTGAACAAGAACCAGA 59.510 47.619 0.00 0.00 0.00 3.86
3706 4238 2.224378 TGAACAAGAACCAGAGCCTGAG 60.224 50.000 4.00 0.00 32.44 3.35
3710 4242 1.078567 GAACCAGAGCCTGAGCCTG 60.079 63.158 4.00 0.00 41.25 4.85
3711 4243 1.537397 AACCAGAGCCTGAGCCTGA 60.537 57.895 4.00 0.00 41.25 3.86
3735 4267 0.312102 GAGCCTGAACAACAACTGCC 59.688 55.000 0.00 0.00 0.00 4.85
3736 4268 1.109323 AGCCTGAACAACAACTGCCC 61.109 55.000 0.00 0.00 0.00 5.36
3769 4301 5.903810 ACCACTGGAGATTTACTCGTATTC 58.096 41.667 0.71 0.00 45.76 1.75
3770 4302 5.657302 ACCACTGGAGATTTACTCGTATTCT 59.343 40.000 0.71 0.00 45.76 2.40
3783 4315 8.687292 TTACTCGTATTCTTCTCCATAAGCTA 57.313 34.615 0.00 0.00 0.00 3.32
3788 4320 9.832445 TCGTATTCTTCTCCATAAGCTATTTTT 57.168 29.630 0.00 0.00 0.00 1.94
3792 4324 8.511604 TTCTTCTCCATAAGCTATTTTTCTGG 57.488 34.615 0.00 0.00 0.00 3.86
3793 4325 7.633789 TCTTCTCCATAAGCTATTTTTCTGGT 58.366 34.615 0.00 0.00 0.00 4.00
3801 4333 5.567138 AGCTATTTTTCTGGTCCATTTCG 57.433 39.130 0.00 0.00 0.00 3.46
3850 4382 1.403780 CCTTTCCTGCTTGCATGCTTC 60.404 52.381 23.31 8.27 0.00 3.86
3930 4462 0.097674 CTTGCACTCGCTATTGTGGC 59.902 55.000 0.00 0.00 39.64 5.01
3945 4477 0.321653 GTGGCACCAGGTACAGAAGG 60.322 60.000 6.29 0.00 0.00 3.46
3960 4492 6.546403 GGTACAGAAGGAGATCGCCATATATA 59.454 42.308 18.44 0.00 0.00 0.86
3974 4506 5.393569 CGCCATATATACCTCTCCTGTCAAG 60.394 48.000 0.00 0.00 0.00 3.02
3981 4513 1.750778 CCTCTCCTGTCAAGCTCTCTC 59.249 57.143 0.00 0.00 0.00 3.20
3993 4525 5.759273 GTCAAGCTCTCTCAAATAGCATCAT 59.241 40.000 0.00 0.00 38.75 2.45
3994 4526 6.927936 GTCAAGCTCTCTCAAATAGCATCATA 59.072 38.462 0.00 0.00 38.75 2.15
3995 4527 6.927936 TCAAGCTCTCTCAAATAGCATCATAC 59.072 38.462 0.00 0.00 38.75 2.39
3996 4528 6.416631 AGCTCTCTCAAATAGCATCATACA 57.583 37.500 0.00 0.00 38.75 2.29
3997 4529 6.457355 AGCTCTCTCAAATAGCATCATACAG 58.543 40.000 0.00 0.00 38.75 2.74
4029 4561 2.598589 CATGGTTGCCGAAACATTGAG 58.401 47.619 0.00 0.00 37.40 3.02
4040 4573 4.872691 CCGAAACATTGAGCTCTAATGTCT 59.127 41.667 28.74 21.93 45.28 3.41
4087 4620 4.515191 TCCCAAATGTTCTTCGAGAAAGTG 59.485 41.667 0.00 0.00 35.75 3.16
4093 4626 3.981416 TGTTCTTCGAGAAAGTGTCATCG 59.019 43.478 0.00 0.00 35.75 3.84
4100 4633 3.679980 CGAGAAAGTGTCATCGGATGTTT 59.320 43.478 17.01 10.31 0.00 2.83
4224 4760 1.256812 GCTACACCAGCCAACCAATT 58.743 50.000 0.00 0.00 45.23 2.32
4258 4794 3.429822 GGTCAGCATAGTACCGTTGCTAA 60.430 47.826 12.75 0.00 44.54 3.09
4277 4813 6.772770 GCTAATTAGCTAGTTCCTGTTAGC 57.227 41.667 26.79 4.32 45.62 3.09
4278 4814 5.697178 GCTAATTAGCTAGTTCCTGTTAGCC 59.303 44.000 26.79 0.00 45.62 3.93
4280 4816 1.952621 AGCTAGTTCCTGTTAGCCCA 58.047 50.000 0.00 0.00 42.51 5.36
4281 4817 2.266279 AGCTAGTTCCTGTTAGCCCAA 58.734 47.619 0.00 0.00 42.51 4.12
4282 4818 2.846827 AGCTAGTTCCTGTTAGCCCAAT 59.153 45.455 0.00 0.00 42.51 3.16
4283 4819 3.267031 AGCTAGTTCCTGTTAGCCCAATT 59.733 43.478 0.00 0.00 42.51 2.32
4284 4820 4.473559 AGCTAGTTCCTGTTAGCCCAATTA 59.526 41.667 0.00 0.00 42.51 1.40
4285 4821 5.045140 AGCTAGTTCCTGTTAGCCCAATTAA 60.045 40.000 0.00 0.00 42.51 1.40
4286 4822 5.828328 GCTAGTTCCTGTTAGCCCAATTAAT 59.172 40.000 0.00 0.00 37.02 1.40
4287 4823 6.996282 GCTAGTTCCTGTTAGCCCAATTAATA 59.004 38.462 0.00 0.00 37.02 0.98
4288 4824 7.173390 GCTAGTTCCTGTTAGCCCAATTAATAG 59.827 40.741 0.00 0.00 37.02 1.73
4289 4825 6.970191 AGTTCCTGTTAGCCCAATTAATAGT 58.030 36.000 0.00 0.00 0.00 2.12
4290 4826 7.054751 AGTTCCTGTTAGCCCAATTAATAGTC 58.945 38.462 0.00 0.00 0.00 2.59
4291 4827 6.569127 TCCTGTTAGCCCAATTAATAGTCA 57.431 37.500 0.00 0.00 0.00 3.41
4292 4828 6.591935 TCCTGTTAGCCCAATTAATAGTCAG 58.408 40.000 0.00 0.00 0.00 3.51
4293 4829 6.385759 TCCTGTTAGCCCAATTAATAGTCAGA 59.614 38.462 0.00 0.00 0.00 3.27
4294 4830 7.054124 CCTGTTAGCCCAATTAATAGTCAGAA 58.946 38.462 0.00 0.00 0.00 3.02
4295 4831 7.012421 CCTGTTAGCCCAATTAATAGTCAGAAC 59.988 40.741 0.00 0.00 0.00 3.01
4296 4832 7.630082 TGTTAGCCCAATTAATAGTCAGAACT 58.370 34.615 0.00 0.00 39.66 3.01
4297 4833 7.769044 TGTTAGCCCAATTAATAGTCAGAACTC 59.231 37.037 0.00 0.00 36.92 3.01
4298 4834 6.313519 AGCCCAATTAATAGTCAGAACTCA 57.686 37.500 0.00 0.00 36.92 3.41
4299 4835 6.352516 AGCCCAATTAATAGTCAGAACTCAG 58.647 40.000 0.00 0.00 36.92 3.35
4300 4836 6.156949 AGCCCAATTAATAGTCAGAACTCAGA 59.843 38.462 0.00 0.00 36.92 3.27
4301 4837 6.823689 GCCCAATTAATAGTCAGAACTCAGAA 59.176 38.462 0.00 0.00 36.92 3.02
4302 4838 7.011857 GCCCAATTAATAGTCAGAACTCAGAAG 59.988 40.741 0.00 0.00 36.92 2.85
4303 4839 8.260818 CCCAATTAATAGTCAGAACTCAGAAGA 58.739 37.037 0.00 0.00 36.92 2.87
4304 4840 9.092876 CCAATTAATAGTCAGAACTCAGAAGAC 57.907 37.037 0.00 0.00 36.92 3.01
4305 4841 9.645059 CAATTAATAGTCAGAACTCAGAAGACA 57.355 33.333 0.00 0.00 36.92 3.41
4308 4844 9.645059 TTAATAGTCAGAACTCAGAAGACATTG 57.355 33.333 0.00 0.00 36.92 2.82
4309 4845 4.314121 AGTCAGAACTCAGAAGACATTGC 58.686 43.478 0.00 0.00 0.00 3.56
4310 4846 3.434984 GTCAGAACTCAGAAGACATTGCC 59.565 47.826 0.00 0.00 0.00 4.52
4311 4847 2.746362 CAGAACTCAGAAGACATTGCCC 59.254 50.000 0.00 0.00 0.00 5.36
4312 4848 2.373169 AGAACTCAGAAGACATTGCCCA 59.627 45.455 0.00 0.00 0.00 5.36
4313 4849 3.009916 AGAACTCAGAAGACATTGCCCAT 59.990 43.478 0.00 0.00 0.00 4.00
4314 4850 2.719739 ACTCAGAAGACATTGCCCATG 58.280 47.619 0.00 0.00 39.07 3.66
4315 4851 2.022195 CTCAGAAGACATTGCCCATGG 58.978 52.381 4.14 4.14 37.17 3.66
4335 4871 6.311935 CCATGGCTGTAAAATTCAAACTGATG 59.688 38.462 0.00 0.00 0.00 3.07
4441 4985 4.827087 AGCAGATCGCCAGCGTGG 62.827 66.667 12.32 0.00 44.04 4.94
4521 5065 3.294493 TCCAACAGCTTTGCGCCC 61.294 61.111 4.18 0.00 40.39 6.13
4531 5075 3.740495 TTTGCGCCCCCTTCCAACA 62.740 57.895 4.18 0.00 0.00 3.33
4535 5079 2.440247 GCCCCCTTCCAACATCCG 60.440 66.667 0.00 0.00 0.00 4.18
4770 5320 3.458487 ACCCTTTCACTGACCTTGTAACT 59.542 43.478 0.00 0.00 0.00 2.24
4795 5345 0.667993 TGCTCCTTCAAAACAAGGCG 59.332 50.000 0.00 0.00 42.63 5.52
4881 5431 2.751166 TTCTCAGTAGAGCAACCAGC 57.249 50.000 0.00 0.00 41.81 4.85
4903 5453 6.698329 CAGCACAAATTGAATTCTTCTGTTGA 59.302 34.615 7.05 0.00 0.00 3.18
4979 5531 5.173774 AGCAAACATGACAAGTACAACTG 57.826 39.130 0.00 0.00 0.00 3.16
5015 5567 2.950990 AACTACTCCCTCTGTCCCAT 57.049 50.000 0.00 0.00 0.00 4.00
5016 5568 4.348020 AAACTACTCCCTCTGTCCCATA 57.652 45.455 0.00 0.00 0.00 2.74
5018 5570 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
5019 5571 4.227197 ACTACTCCCTCTGTCCCATAATG 58.773 47.826 0.00 0.00 0.00 1.90
5020 5572 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
5021 5573 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
5023 5575 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
5025 5577 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
5026 5578 4.501571 CCCTCTGTCCCATAATGTAAGACG 60.502 50.000 0.00 0.00 0.00 4.18
5028 5580 5.395324 CCTCTGTCCCATAATGTAAGACGTT 60.395 44.000 0.00 0.00 0.00 3.99
5029 5581 6.045072 TCTGTCCCATAATGTAAGACGTTT 57.955 37.500 0.00 0.00 0.00 3.60
5030 5582 6.469410 TCTGTCCCATAATGTAAGACGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
5075 5627 6.693315 AAAACGTCTTACATTATGGGATGG 57.307 37.500 0.00 0.00 0.00 3.51
5076 5628 5.623956 AACGTCTTACATTATGGGATGGA 57.376 39.130 0.00 0.00 0.00 3.41
5077 5629 5.215252 ACGTCTTACATTATGGGATGGAG 57.785 43.478 0.00 0.00 0.00 3.86
5078 5630 4.040461 ACGTCTTACATTATGGGATGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
5079 5631 4.563580 CGTCTTACATTATGGGATGGAGGG 60.564 50.000 0.00 0.00 0.00 4.30
5080 5632 4.597507 GTCTTACATTATGGGATGGAGGGA 59.402 45.833 0.00 0.00 0.00 4.20
5081 5633 4.846367 TCTTACATTATGGGATGGAGGGAG 59.154 45.833 0.00 0.00 0.00 4.30
5082 5634 3.080660 ACATTATGGGATGGAGGGAGT 57.919 47.619 0.00 0.00 0.00 3.85
5083 5635 4.228237 ACATTATGGGATGGAGGGAGTA 57.772 45.455 0.00 0.00 0.00 2.59
5084 5636 3.910627 ACATTATGGGATGGAGGGAGTAC 59.089 47.826 0.00 0.00 0.00 2.73
5085 5637 4.171234 CATTATGGGATGGAGGGAGTACT 58.829 47.826 0.00 0.00 0.00 2.73
5086 5638 2.897823 ATGGGATGGAGGGAGTACTT 57.102 50.000 0.00 0.00 0.00 2.24
5087 5639 2.661176 TGGGATGGAGGGAGTACTTT 57.339 50.000 0.00 0.00 0.00 2.66
5088 5640 2.196595 TGGGATGGAGGGAGTACTTTG 58.803 52.381 0.00 0.00 0.00 2.77
5089 5641 2.225779 TGGGATGGAGGGAGTACTTTGA 60.226 50.000 0.00 0.00 0.00 2.69
5090 5642 2.844348 GGGATGGAGGGAGTACTTTGAA 59.156 50.000 0.00 0.00 0.00 2.69
5091 5643 3.459969 GGGATGGAGGGAGTACTTTGAAT 59.540 47.826 0.00 0.00 0.00 2.57
5092 5644 4.658901 GGGATGGAGGGAGTACTTTGAATA 59.341 45.833 0.00 0.00 0.00 1.75
5093 5645 5.454897 GGGATGGAGGGAGTACTTTGAATAC 60.455 48.000 0.00 0.00 0.00 1.89
5094 5646 5.367060 GGATGGAGGGAGTACTTTGAATACT 59.633 44.000 0.00 0.00 35.54 2.12
5095 5647 5.677319 TGGAGGGAGTACTTTGAATACTG 57.323 43.478 0.00 0.00 32.93 2.74
5096 5648 5.338632 TGGAGGGAGTACTTTGAATACTGA 58.661 41.667 0.00 0.00 32.93 3.41
5097 5649 5.783360 TGGAGGGAGTACTTTGAATACTGAA 59.217 40.000 0.00 0.00 32.93 3.02
5098 5650 6.271391 TGGAGGGAGTACTTTGAATACTGAAA 59.729 38.462 0.00 0.00 32.93 2.69
5099 5651 7.166167 GGAGGGAGTACTTTGAATACTGAAAA 58.834 38.462 0.00 0.00 32.93 2.29
5100 5652 7.664318 GGAGGGAGTACTTTGAATACTGAAAAA 59.336 37.037 0.00 0.00 32.93 1.94
5123 5675 7.889589 AAAAATGCTACAGGTAAGAAATTGC 57.110 32.000 0.00 0.00 0.00 3.56
5124 5676 6.588719 AAATGCTACAGGTAAGAAATTGCA 57.411 33.333 0.00 0.00 0.00 4.08
5125 5677 5.567138 ATGCTACAGGTAAGAAATTGCAC 57.433 39.130 0.00 0.00 0.00 4.57
5126 5678 4.393834 TGCTACAGGTAAGAAATTGCACA 58.606 39.130 0.00 0.00 0.00 4.57
5127 5679 4.824537 TGCTACAGGTAAGAAATTGCACAA 59.175 37.500 0.00 0.00 0.00 3.33
5128 5680 5.300539 TGCTACAGGTAAGAAATTGCACAAA 59.699 36.000 0.00 0.00 0.00 2.83
5129 5681 6.015519 TGCTACAGGTAAGAAATTGCACAAAT 60.016 34.615 0.00 0.00 0.00 2.32
5130 5682 6.308766 GCTACAGGTAAGAAATTGCACAAATG 59.691 38.462 0.00 0.00 0.00 2.32
5131 5683 6.403866 ACAGGTAAGAAATTGCACAAATGA 57.596 33.333 0.00 0.00 0.00 2.57
5132 5684 6.215845 ACAGGTAAGAAATTGCACAAATGAC 58.784 36.000 0.00 0.00 0.00 3.06
5133 5685 6.183360 ACAGGTAAGAAATTGCACAAATGACA 60.183 34.615 0.00 0.00 0.00 3.58
5134 5686 6.869913 CAGGTAAGAAATTGCACAAATGACAT 59.130 34.615 0.00 0.00 0.00 3.06
5135 5687 8.028354 CAGGTAAGAAATTGCACAAATGACATA 58.972 33.333 0.00 0.00 0.00 2.29
5136 5688 8.028938 AGGTAAGAAATTGCACAAATGACATAC 58.971 33.333 0.00 0.00 0.00 2.39
5137 5689 8.028938 GGTAAGAAATTGCACAAATGACATACT 58.971 33.333 0.00 0.00 0.00 2.12
5140 5692 8.970691 AGAAATTGCACAAATGACATACTAAC 57.029 30.769 0.00 0.00 0.00 2.34
5141 5693 8.796475 AGAAATTGCACAAATGACATACTAACT 58.204 29.630 0.00 0.00 0.00 2.24
5142 5694 8.970691 AAATTGCACAAATGACATACTAACTC 57.029 30.769 0.00 0.00 0.00 3.01
5143 5695 5.778161 TGCACAAATGACATACTAACTCG 57.222 39.130 0.00 0.00 0.00 4.18
5144 5696 4.092821 TGCACAAATGACATACTAACTCGC 59.907 41.667 0.00 0.00 0.00 5.03
5145 5697 4.494199 GCACAAATGACATACTAACTCGCC 60.494 45.833 0.00 0.00 0.00 5.54
5146 5698 4.629634 CACAAATGACATACTAACTCGCCA 59.370 41.667 0.00 0.00 0.00 5.69
5147 5699 5.294306 CACAAATGACATACTAACTCGCCAT 59.706 40.000 0.00 0.00 0.00 4.40
5148 5700 6.478673 CACAAATGACATACTAACTCGCCATA 59.521 38.462 0.00 0.00 0.00 2.74
5149 5701 7.011016 CACAAATGACATACTAACTCGCCATAA 59.989 37.037 0.00 0.00 0.00 1.90
5150 5702 7.224753 ACAAATGACATACTAACTCGCCATAAG 59.775 37.037 0.00 0.00 0.00 1.73
5151 5703 4.617959 TGACATACTAACTCGCCATAAGC 58.382 43.478 0.00 0.00 38.52 3.09
5152 5704 3.988517 GACATACTAACTCGCCATAAGCC 59.011 47.826 0.00 0.00 38.78 4.35
5153 5705 3.641906 ACATACTAACTCGCCATAAGCCT 59.358 43.478 0.00 0.00 38.78 4.58
5154 5706 4.831155 ACATACTAACTCGCCATAAGCCTA 59.169 41.667 0.00 0.00 38.78 3.93
5155 5707 5.303589 ACATACTAACTCGCCATAAGCCTAA 59.696 40.000 0.00 0.00 38.78 2.69
5156 5708 4.748277 ACTAACTCGCCATAAGCCTAAA 57.252 40.909 0.00 0.00 38.78 1.85
5157 5709 4.439968 ACTAACTCGCCATAAGCCTAAAC 58.560 43.478 0.00 0.00 38.78 2.01
5158 5710 3.629142 AACTCGCCATAAGCCTAAACT 57.371 42.857 0.00 0.00 38.78 2.66
5159 5711 4.748277 AACTCGCCATAAGCCTAAACTA 57.252 40.909 0.00 0.00 38.78 2.24
5160 5712 4.056092 ACTCGCCATAAGCCTAAACTAC 57.944 45.455 0.00 0.00 38.78 2.73
5161 5713 3.705072 ACTCGCCATAAGCCTAAACTACT 59.295 43.478 0.00 0.00 38.78 2.57
5162 5714 4.051922 CTCGCCATAAGCCTAAACTACTG 58.948 47.826 0.00 0.00 38.78 2.74
5163 5715 2.544267 CGCCATAAGCCTAAACTACTGC 59.456 50.000 0.00 0.00 38.78 4.40
5164 5716 2.544267 GCCATAAGCCTAAACTACTGCG 59.456 50.000 0.00 0.00 34.35 5.18
5165 5717 3.793559 CCATAAGCCTAAACTACTGCGT 58.206 45.455 0.00 0.00 0.00 5.24
5166 5718 4.738541 GCCATAAGCCTAAACTACTGCGTA 60.739 45.833 0.00 0.00 34.35 4.42
5167 5719 5.539048 CCATAAGCCTAAACTACTGCGTAT 58.461 41.667 0.00 0.00 0.00 3.06
5168 5720 5.405571 CCATAAGCCTAAACTACTGCGTATG 59.594 44.000 8.61 8.61 42.18 2.39
5169 5721 4.467198 AAGCCTAAACTACTGCGTATGT 57.533 40.909 0.00 0.00 0.00 2.29
5170 5722 3.782046 AGCCTAAACTACTGCGTATGTG 58.218 45.455 0.00 0.00 0.00 3.21
5171 5723 3.194968 AGCCTAAACTACTGCGTATGTGT 59.805 43.478 0.00 0.00 0.00 3.72
5172 5724 4.400251 AGCCTAAACTACTGCGTATGTGTA 59.600 41.667 0.00 0.00 0.00 2.90
5173 5725 5.068723 AGCCTAAACTACTGCGTATGTGTAT 59.931 40.000 0.00 0.00 0.00 2.29
5174 5726 5.401674 GCCTAAACTACTGCGTATGTGTATC 59.598 44.000 0.00 0.00 0.00 2.24
5175 5727 6.735145 GCCTAAACTACTGCGTATGTGTATCT 60.735 42.308 0.00 0.00 0.00 1.98
5176 5728 6.637254 CCTAAACTACTGCGTATGTGTATCTG 59.363 42.308 0.00 0.00 0.00 2.90
5177 5729 4.569761 ACTACTGCGTATGTGTATCTGG 57.430 45.455 0.00 0.00 0.00 3.86
5178 5730 4.204799 ACTACTGCGTATGTGTATCTGGA 58.795 43.478 0.00 0.00 0.00 3.86
5179 5731 4.643334 ACTACTGCGTATGTGTATCTGGAA 59.357 41.667 0.00 0.00 0.00 3.53
5180 5732 4.465632 ACTGCGTATGTGTATCTGGAAA 57.534 40.909 0.00 0.00 0.00 3.13
5181 5733 4.827692 ACTGCGTATGTGTATCTGGAAAA 58.172 39.130 0.00 0.00 0.00 2.29
5182 5734 4.630069 ACTGCGTATGTGTATCTGGAAAAC 59.370 41.667 0.00 0.00 0.00 2.43
5183 5735 4.570930 TGCGTATGTGTATCTGGAAAACA 58.429 39.130 0.00 0.00 0.00 2.83
5184 5736 4.998033 TGCGTATGTGTATCTGGAAAACAA 59.002 37.500 0.00 0.00 0.00 2.83
5185 5737 5.470437 TGCGTATGTGTATCTGGAAAACAAA 59.530 36.000 0.00 0.00 0.00 2.83
5186 5738 6.021596 GCGTATGTGTATCTGGAAAACAAAG 58.978 40.000 0.00 0.00 0.00 2.77
5187 5739 6.128391 GCGTATGTGTATCTGGAAAACAAAGA 60.128 38.462 0.00 0.00 0.00 2.52
5188 5740 7.456253 CGTATGTGTATCTGGAAAACAAAGAG 58.544 38.462 0.00 0.00 0.00 2.85
5189 5741 7.330946 CGTATGTGTATCTGGAAAACAAAGAGA 59.669 37.037 0.00 0.00 0.00 3.10
5190 5742 9.167311 GTATGTGTATCTGGAAAACAAAGAGAT 57.833 33.333 0.00 0.00 0.00 2.75
5191 5743 8.641498 ATGTGTATCTGGAAAACAAAGAGATT 57.359 30.769 0.00 0.00 0.00 2.40
5256 5808 7.684937 ATAAGGCTGCTCTCATTTCATAATC 57.315 36.000 0.00 0.00 0.00 1.75
5270 5822 8.306038 TCATTTCATAATCTGTGTCCAAAAAGG 58.694 33.333 0.00 0.00 39.47 3.11
5285 5837 7.273457 TCCAAAAAGGATGGGTATAGTAACA 57.727 36.000 0.00 0.00 43.07 2.41
5286 5838 7.343357 TCCAAAAAGGATGGGTATAGTAACAG 58.657 38.462 0.00 0.00 43.07 3.16
5287 5839 6.039382 CCAAAAAGGATGGGTATAGTAACAGC 59.961 42.308 0.00 0.00 41.22 4.40
5288 5840 6.576778 AAAAGGATGGGTATAGTAACAGCT 57.423 37.500 0.00 0.00 0.00 4.24
5289 5841 5.552870 AAGGATGGGTATAGTAACAGCTG 57.447 43.478 13.48 13.48 0.00 4.24
5290 5842 4.816126 AGGATGGGTATAGTAACAGCTGA 58.184 43.478 23.35 0.00 0.00 4.26
5291 5843 5.216622 AGGATGGGTATAGTAACAGCTGAA 58.783 41.667 23.35 4.90 0.00 3.02
5292 5844 5.070580 AGGATGGGTATAGTAACAGCTGAAC 59.929 44.000 23.35 17.56 0.00 3.18
5293 5845 5.070580 GGATGGGTATAGTAACAGCTGAACT 59.929 44.000 23.35 23.34 0.00 3.01
5310 5862 4.340617 TGAACTGGACAAAACTCCTGTTT 58.659 39.130 10.68 0.00 46.77 2.83
5349 5901 4.353383 AGGAAACTAGGAAAGCGAAAGT 57.647 40.909 0.00 0.00 40.61 2.66
5360 5912 7.365840 AGGAAAGCGAAAGTTAGAAATACAG 57.634 36.000 0.00 0.00 0.00 2.74
5369 5921 9.151471 CGAAAGTTAGAAATACAGGAATGAGAA 57.849 33.333 0.00 0.00 0.00 2.87
5490 6042 2.472029 CTAGGGTCCCAGAATGACAGT 58.528 52.381 11.55 0.00 39.69 3.55
5492 6044 0.693049 GGGTCCCAGAATGACAGTGT 59.307 55.000 1.78 0.00 39.69 3.55
5506 6058 4.563524 GACAGTGTGTCGTTATAGTTGC 57.436 45.455 0.00 0.00 37.67 4.17
5507 6059 4.235360 GACAGTGTGTCGTTATAGTTGCT 58.765 43.478 0.00 0.00 37.67 3.91
5508 6060 5.381174 ACAGTGTGTCGTTATAGTTGCTA 57.619 39.130 0.00 0.00 0.00 3.49
5509 6061 5.159209 ACAGTGTGTCGTTATAGTTGCTAC 58.841 41.667 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.211973 AGGAGATCACTAACATTGGAGCTA 58.788 41.667 0.00 0.00 0.00 3.32
1 2 4.036518 AGGAGATCACTAACATTGGAGCT 58.963 43.478 0.00 0.00 0.00 4.09
12 13 2.302260 CCGAGCAGAAGGAGATCACTA 58.698 52.381 0.00 0.00 0.00 2.74
13 14 1.110442 CCGAGCAGAAGGAGATCACT 58.890 55.000 0.00 0.00 0.00 3.41
19 20 3.423162 CTCGCCCGAGCAGAAGGAG 62.423 68.421 4.63 0.00 39.83 3.69
54 55 1.445095 GCCTCATCGAGCTCCACAT 59.555 57.895 8.47 0.00 0.00 3.21
81 82 1.701847 AGTCTTCTCCTTGCACCACAT 59.298 47.619 0.00 0.00 0.00 3.21
96 97 1.056660 AACACCCCGACATCAGTCTT 58.943 50.000 0.00 0.00 42.73 3.01
100 101 0.250295 ACACAACACCCCGACATCAG 60.250 55.000 0.00 0.00 0.00 2.90
134 137 2.676342 CCCACTATTTAAGCGTGACCAC 59.324 50.000 0.00 0.00 0.00 4.16
138 141 2.568062 TCCACCCACTATTTAAGCGTGA 59.432 45.455 0.00 0.00 0.00 4.35
162 165 0.827925 ACTCTCTGGTTGACGCCTCA 60.828 55.000 0.00 0.00 0.00 3.86
181 184 3.215151 TCTGCCGACCAACATTAAACAA 58.785 40.909 0.00 0.00 0.00 2.83
197 200 4.436998 CACGTCCGTCCCTCTGCC 62.437 72.222 0.00 0.00 0.00 4.85
210 213 4.373116 ATTCCGAGCGCCACACGT 62.373 61.111 2.29 0.00 46.11 4.49
225 228 2.233271 CAAGGAACACACTCTGGCATT 58.767 47.619 0.00 0.00 0.00 3.56
226 229 1.546323 CCAAGGAACACACTCTGGCAT 60.546 52.381 0.00 0.00 0.00 4.40
236 239 1.008538 CGCTTGTGCCAAGGAACAC 60.009 57.895 14.32 0.00 32.55 3.32
237 240 2.844451 GCGCTTGTGCCAAGGAACA 61.844 57.895 14.32 0.00 35.36 3.18
266 269 3.771160 CGTCTGCCCGCCTACCTT 61.771 66.667 0.00 0.00 0.00 3.50
285 288 2.747446 TCTCTCCGCATTAAAAAGGCAC 59.253 45.455 0.00 0.00 0.00 5.01
290 293 3.500680 ACGCTTTCTCTCCGCATTAAAAA 59.499 39.130 0.00 0.00 0.00 1.94
304 308 2.588877 ACGCTGCACACGCTTTCT 60.589 55.556 0.00 0.00 39.64 2.52
323 327 3.713615 GAGCGTCGCTTGCTGCATG 62.714 63.158 22.67 7.23 44.18 4.06
324 328 3.494336 GAGCGTCGCTTGCTGCAT 61.494 61.111 22.67 0.00 44.18 3.96
325 329 4.669842 AGAGCGTCGCTTGCTGCA 62.670 61.111 22.67 0.00 44.18 4.41
326 330 3.847709 GAGAGCGTCGCTTGCTGC 61.848 66.667 22.67 8.04 44.18 5.25
327 331 3.540014 CGAGAGCGTCGCTTGCTG 61.540 66.667 22.67 8.18 44.18 4.41
345 349 1.428448 CATTGAAGCGTCTCGTTGGA 58.572 50.000 0.31 0.00 0.00 3.53
347 351 0.792640 AGCATTGAAGCGTCTCGTTG 59.207 50.000 0.31 0.00 40.15 4.10
348 352 0.792640 CAGCATTGAAGCGTCTCGTT 59.207 50.000 0.31 0.00 40.15 3.85
366 370 3.695606 GACCTCTCACTGGCGCCA 61.696 66.667 30.59 30.59 0.00 5.69
371 375 0.387367 CGAACGTGACCTCTCACTGG 60.387 60.000 0.00 0.00 44.27 4.00
388 392 3.585862 CACTAAAGCCAGTCTAAAGCGA 58.414 45.455 0.00 0.00 0.00 4.93
393 397 1.897133 TCCGCACTAAAGCCAGTCTAA 59.103 47.619 0.00 0.00 0.00 2.10
395 399 0.247736 CTCCGCACTAAAGCCAGTCT 59.752 55.000 0.00 0.00 0.00 3.24
397 401 1.376037 GCTCCGCACTAAAGCCAGT 60.376 57.895 0.00 0.00 0.00 4.00
405 409 1.135489 CAGAGTTTACGCTCCGCACTA 60.135 52.381 0.00 0.00 36.20 2.74
407 411 1.352156 CCAGAGTTTACGCTCCGCAC 61.352 60.000 0.00 0.00 36.20 5.34
420 424 0.036858 GCGCTCTTTTCCTCCAGAGT 60.037 55.000 0.00 0.00 39.10 3.24
440 444 1.918957 CCAAAATCCTCTCCCTCACCT 59.081 52.381 0.00 0.00 0.00 4.00
443 447 3.976654 CCTATCCAAAATCCTCTCCCTCA 59.023 47.826 0.00 0.00 0.00 3.86
461 465 3.621558 GCTTCTAACAAACCTGGCCTAT 58.378 45.455 3.32 0.00 0.00 2.57
463 467 1.882352 CGCTTCTAACAAACCTGGCCT 60.882 52.381 3.32 0.00 0.00 5.19
510 521 4.761739 TGAACCAGAATCAAACAGGTGATC 59.238 41.667 0.00 0.00 37.25 2.92
512 523 4.163441 TGAACCAGAATCAAACAGGTGA 57.837 40.909 0.00 0.00 31.86 4.02
513 524 4.520111 TCATGAACCAGAATCAAACAGGTG 59.480 41.667 0.00 0.00 31.86 4.00
514 525 4.728772 TCATGAACCAGAATCAAACAGGT 58.271 39.130 0.00 0.00 0.00 4.00
553 564 3.795688 ATATCCATTCATGAGCCGGTT 57.204 42.857 1.90 0.00 0.00 4.44
558 569 4.080695 TGGGCTCTATATCCATTCATGAGC 60.081 45.833 0.00 0.00 43.02 4.26
562 573 3.840666 ACGTGGGCTCTATATCCATTCAT 59.159 43.478 0.00 0.00 32.71 2.57
563 574 3.239449 ACGTGGGCTCTATATCCATTCA 58.761 45.455 0.00 0.00 32.71 2.57
567 578 1.691976 CCAACGTGGGCTCTATATCCA 59.308 52.381 0.00 0.00 32.67 3.41
568 579 1.968493 TCCAACGTGGGCTCTATATCC 59.032 52.381 3.23 0.00 38.32 2.59
577 588 2.093537 TTTTGCCATCCAACGTGGGC 62.094 55.000 3.23 6.31 46.58 5.36
580 591 0.319469 GGGTTTTGCCATCCAACGTG 60.319 55.000 0.00 0.00 39.65 4.49
581 592 1.801309 CGGGTTTTGCCATCCAACGT 61.801 55.000 0.00 0.00 39.65 3.99
582 593 1.080839 CGGGTTTTGCCATCCAACG 60.081 57.895 0.00 0.00 39.65 4.10
598 609 2.887360 ACCATACGGTTCGGACGG 59.113 61.111 0.00 0.00 46.31 4.79
608 619 0.248621 GTAACCGTCCGGACCATACG 60.249 60.000 28.52 16.98 38.96 3.06
609 620 0.248621 CGTAACCGTCCGGACCATAC 60.249 60.000 28.52 23.87 38.96 2.39
610 621 2.105984 CGTAACCGTCCGGACCATA 58.894 57.895 28.52 15.69 38.96 2.74
611 622 2.887360 CGTAACCGTCCGGACCAT 59.113 61.111 28.52 16.71 38.96 3.55
618 629 4.747529 AAGCGCCCGTAACCGTCC 62.748 66.667 2.29 0.00 0.00 4.79
619 630 3.184003 GAAGCGCCCGTAACCGTC 61.184 66.667 2.29 0.00 0.00 4.79
633 644 3.580731 GACCAAGAAGAAGACGAGGAAG 58.419 50.000 0.00 0.00 0.00 3.46
637 648 2.094442 GGAGGACCAAGAAGAAGACGAG 60.094 54.545 0.00 0.00 35.97 4.18
640 651 1.066787 CGGGAGGACCAAGAAGAAGAC 60.067 57.143 0.00 0.00 40.22 3.01
646 657 2.747686 GCACGGGAGGACCAAGAA 59.252 61.111 0.00 0.00 40.22 2.52
647 658 3.691342 CGCACGGGAGGACCAAGA 61.691 66.667 0.00 0.00 40.22 3.02
648 659 3.530910 AACGCACGGGAGGACCAAG 62.531 63.158 0.00 0.00 40.22 3.61
657 668 0.242825 TCTGTCTAGAAACGCACGGG 59.757 55.000 0.00 0.00 0.00 5.28
660 671 2.255316 GAGCTCTGTCTAGAAACGCAC 58.745 52.381 6.43 0.00 31.21 5.34
693 910 1.733360 TGACGTCGTGATCGTATGTGA 59.267 47.619 11.62 0.00 41.64 3.58
703 920 2.204461 ATGGGTGGTGACGTCGTGA 61.204 57.895 11.62 0.00 0.00 4.35
707 924 1.066143 AGAATCATGGGTGGTGACGTC 60.066 52.381 9.11 9.11 0.00 4.34
728 951 3.942130 TTTGAGCACGATGAGAGAGAA 57.058 42.857 0.00 0.00 0.00 2.87
824 1047 3.069289 GCTAATTTTGGCAAAGCAAGCT 58.931 40.909 23.71 8.23 34.50 3.74
825 1048 2.159801 CGCTAATTTTGGCAAAGCAAGC 60.160 45.455 22.27 22.27 33.91 4.01
826 1049 2.159801 GCGCTAATTTTGGCAAAGCAAG 60.160 45.455 18.62 14.68 33.91 4.01
827 1050 1.797635 GCGCTAATTTTGGCAAAGCAA 59.202 42.857 18.62 4.11 33.91 3.91
828 1051 1.427435 GCGCTAATTTTGGCAAAGCA 58.573 45.000 18.62 4.80 33.91 3.91
1112 1364 5.352569 AGAGAAATTAATCGCACACAAGGAG 59.647 40.000 0.00 0.00 0.00 3.69
1117 1369 6.073494 TCGAAAAGAGAAATTAATCGCACACA 60.073 34.615 0.00 0.00 0.00 3.72
1118 1370 6.304126 TCGAAAAGAGAAATTAATCGCACAC 58.696 36.000 0.00 0.00 0.00 3.82
1151 1403 6.041523 TGAATCACACATCGATTATGGTAGGA 59.958 38.462 10.42 4.08 40.16 2.94
1184 1436 0.463620 TGACAAACCCAAGCAAAGCC 59.536 50.000 0.00 0.00 0.00 4.35
1201 1461 5.210430 ACAATGGCAATATCCAAATCCTGA 58.790 37.500 0.00 0.00 39.96 3.86
1243 1503 2.315443 CTCCTTGGGAGGGCATTCT 58.685 57.895 5.73 0.00 45.43 2.40
1341 1603 1.021390 GTTCACATGTGAGGGCTCCG 61.021 60.000 26.48 0.00 41.13 4.63
1352 1614 9.912634 ATTTTAAATCAAGGTACTGTTCACATG 57.087 29.630 0.00 0.00 40.86 3.21
1439 1711 4.499183 ACTTCACAAAATTTTGCACGGAA 58.501 34.783 26.94 21.94 41.79 4.30
1505 1777 7.437793 AATTTTTGGAAATCGCATTGTTCAT 57.562 28.000 0.00 0.00 34.44 2.57
1512 1784 6.147656 GGTTGAGAAATTTTTGGAAATCGCAT 59.852 34.615 0.00 0.00 34.44 4.73
1517 1789 8.431222 TCAGATGGTTGAGAAATTTTTGGAAAT 58.569 29.630 0.00 0.00 37.06 2.17
1521 1793 8.611654 ATTTCAGATGGTTGAGAAATTTTTGG 57.388 30.769 0.00 0.00 37.39 3.28
1528 1800 5.511202 GGGCAAATTTCAGATGGTTGAGAAA 60.511 40.000 0.00 0.00 34.83 2.52
1529 1801 4.021192 GGGCAAATTTCAGATGGTTGAGAA 60.021 41.667 0.00 0.00 0.00 2.87
1531 1803 3.512724 AGGGCAAATTTCAGATGGTTGAG 59.487 43.478 0.00 0.00 0.00 3.02
1532 1804 3.509442 AGGGCAAATTTCAGATGGTTGA 58.491 40.909 0.00 0.00 0.00 3.18
1533 1805 3.967332 AGGGCAAATTTCAGATGGTTG 57.033 42.857 0.00 0.00 0.00 3.77
1534 1806 4.980339 AAAGGGCAAATTTCAGATGGTT 57.020 36.364 0.00 0.00 0.00 3.67
1536 1808 5.179929 GTGAAAAAGGGCAAATTTCAGATGG 59.820 40.000 9.97 0.00 42.03 3.51
1541 1813 4.367450 CTCGTGAAAAAGGGCAAATTTCA 58.633 39.130 6.69 6.69 39.89 2.69
1558 1830 1.872952 TGAACATTTGTGGAGCTCGTG 59.127 47.619 7.83 2.35 0.00 4.35
1566 1840 6.718454 TTTGTGAAGTTTGAACATTTGTGG 57.282 33.333 0.00 0.00 0.00 4.17
1600 1874 3.786635 AGATGATCCTGTGCGTTAACTC 58.213 45.455 3.71 0.00 0.00 3.01
1602 1876 3.485877 GCAAGATGATCCTGTGCGTTAAC 60.486 47.826 0.00 0.00 0.00 2.01
1603 1877 2.677836 GCAAGATGATCCTGTGCGTTAA 59.322 45.455 0.00 0.00 0.00 2.01
1604 1878 2.279741 GCAAGATGATCCTGTGCGTTA 58.720 47.619 0.00 0.00 0.00 3.18
1605 1879 1.089920 GCAAGATGATCCTGTGCGTT 58.910 50.000 0.00 0.00 0.00 4.84
1608 1882 0.737219 GGTGCAAGATGATCCTGTGC 59.263 55.000 6.45 6.45 35.75 4.57
1653 1936 9.160496 GGCATGAACATTACCATGATTTAAAAA 57.840 29.630 0.00 0.00 41.88 1.94
1664 1947 1.959508 GCCCAGGCATGAACATTACCA 60.960 52.381 0.00 0.00 41.49 3.25
1669 1952 0.260816 ATGAGCCCAGGCATGAACAT 59.739 50.000 12.03 5.63 44.88 2.71
1709 1992 2.508586 AAGAGAAACCGGAGAGCGGC 62.509 60.000 9.46 0.00 0.00 6.53
1792 2209 7.761249 GCACTTACAAGATGCCAAGAATATTTT 59.239 33.333 0.00 0.00 33.06 1.82
1939 2358 0.597637 CACGAGAAAGGACACGCACT 60.598 55.000 0.00 0.00 0.00 4.40
1943 2362 2.027625 GGCCACGAGAAAGGACACG 61.028 63.158 0.00 0.00 31.39 4.49
1952 2371 2.088104 ATTGATAGGAGGCCACGAGA 57.912 50.000 5.01 0.00 0.00 4.04
1956 2375 3.117888 TGAGGAAATTGATAGGAGGCCAC 60.118 47.826 5.01 0.00 0.00 5.01
1958 2377 3.864789 TGAGGAAATTGATAGGAGGCC 57.135 47.619 0.00 0.00 0.00 5.19
1986 2451 8.660295 TTACTTTCTAACCTAGACCATGAGAA 57.340 34.615 0.00 0.00 33.84 2.87
1987 2452 8.529476 GTTTACTTTCTAACCTAGACCATGAGA 58.471 37.037 0.00 0.00 33.84 3.27
2008 2474 3.751698 AGAAGGCTCGAAACATGGTTTAC 59.248 43.478 0.00 0.00 0.00 2.01
2009 2475 4.015872 AGAAGGCTCGAAACATGGTTTA 57.984 40.909 0.00 0.00 0.00 2.01
2022 2488 3.930634 AATGTGCTGAAAAGAAGGCTC 57.069 42.857 0.00 0.00 0.00 4.70
2141 2607 1.152030 TGAGTGGGCCAGGAACTCT 60.152 57.895 19.14 7.52 40.79 3.24
2187 2653 2.019984 GCTCGAGCCATCCTTGAAATT 58.980 47.619 27.22 0.00 33.54 1.82
2188 2654 1.673168 GCTCGAGCCATCCTTGAAAT 58.327 50.000 27.22 0.00 33.54 2.17
2200 2666 0.815615 CCAACCTAATGGGCTCGAGC 60.816 60.000 29.38 29.38 39.10 5.03
2248 2717 5.163457 TGTTTCACATCTTTTTCCCTGTTCC 60.163 40.000 0.00 0.00 0.00 3.62
2265 2734 5.063180 TCATTGATGCAAGGATGTTTCAC 57.937 39.130 0.00 0.00 29.10 3.18
2268 2737 3.118884 GCCTCATTGATGCAAGGATGTTT 60.119 43.478 8.81 0.00 33.75 2.83
2285 2754 0.918983 CCTTGGGGTATCTTGCCTCA 59.081 55.000 0.00 0.00 34.08 3.86
2300 2769 0.460635 CGGGAAATGCCATTGCCTTG 60.461 55.000 14.24 3.83 38.12 3.61
2324 2799 4.102524 TGAGGTGCCATTTCTACCGATTAT 59.897 41.667 0.00 0.00 39.46 1.28
2326 2801 2.238646 TGAGGTGCCATTTCTACCGATT 59.761 45.455 0.00 0.00 39.46 3.34
2342 2817 5.388654 AGAACAAGGTGAATCATTTGAGGT 58.611 37.500 14.46 3.15 0.00 3.85
2349 2824 6.152323 CCAAGATCAAGAACAAGGTGAATCAT 59.848 38.462 0.00 0.00 0.00 2.45
2427 2902 2.167861 CCTAAAGCACTCGAGCCGC 61.168 63.158 13.61 15.83 34.23 6.53
2433 2908 7.434307 TCGTATTTTAGATTCCTAAAGCACTCG 59.566 37.037 0.00 0.00 43.43 4.18
2543 3018 3.487536 GCACAAGGCAAACAAACAAAAC 58.512 40.909 0.00 0.00 43.97 2.43
2552 3027 1.080569 CCATCCGCACAAGGCAAAC 60.081 57.895 0.00 0.00 45.17 2.93
2571 3046 4.142513 GCATTTCTCAGGATCACAACCTTC 60.143 45.833 0.00 0.00 35.35 3.46
2618 3093 3.117398 TCCATAAGATCAAGCCAAGGCAT 60.117 43.478 14.40 0.00 44.88 4.40
2626 3101 4.296690 GCAAATGCTCCATAAGATCAAGC 58.703 43.478 0.00 0.00 38.21 4.01
2693 3168 1.276421 AGCGTAACAAGGCAGTGATCT 59.724 47.619 0.00 0.00 0.00 2.75
2723 3198 8.725148 CATGAATTCAGCTAGTAAACAGTTCTT 58.275 33.333 14.54 0.00 0.00 2.52
2788 3263 6.883217 AGGCTAATGCATATTGAATGAGGTAG 59.117 38.462 0.00 0.00 41.91 3.18
2794 3269 6.092955 ACCAAGGCTAATGCATATTGAATG 57.907 37.500 0.00 0.00 41.91 2.67
2857 3333 6.751888 AGAACAAATATTACCTCGCAAAATGC 59.248 34.615 0.00 0.00 40.69 3.56
2864 3340 7.781548 TTTCCTAGAACAAATATTACCTCGC 57.218 36.000 0.00 0.00 0.00 5.03
2872 3348 9.301897 GGCCATAAGATTTCCTAGAACAAATAT 57.698 33.333 0.00 0.00 0.00 1.28
2873 3349 7.444183 CGGCCATAAGATTTCCTAGAACAAATA 59.556 37.037 2.24 0.00 0.00 1.40
2879 3355 4.163458 ACACGGCCATAAGATTTCCTAGAA 59.837 41.667 2.24 0.00 0.00 2.10
2887 3363 1.472480 GCAACACACGGCCATAAGATT 59.528 47.619 2.24 0.00 0.00 2.40
2898 3374 1.439201 CTGTCGCATGCAACACACG 60.439 57.895 19.57 0.00 0.00 4.49
2939 3419 7.966204 TGATTCTATCATTGATTGCGCAATATG 59.034 33.333 33.98 30.67 36.39 1.78
2959 3439 7.121382 ACCATATCAACAAGGTTGATGATTCT 58.879 34.615 26.46 9.47 44.88 2.40
3033 3513 6.406692 TGAGATCCGGAAATACTTTAGAGG 57.593 41.667 9.01 0.00 0.00 3.69
3038 3518 5.755849 ACCAATGAGATCCGGAAATACTTT 58.244 37.500 9.01 2.63 0.00 2.66
3079 3572 1.257743 TAGCATCATACCTCGGCCTC 58.742 55.000 0.00 0.00 0.00 4.70
3081 3574 1.550524 TGATAGCATCATACCTCGGCC 59.449 52.381 0.00 0.00 33.59 6.13
3107 3600 8.512956 CATGCTAGCTCTTTTATAGATTGCAAT 58.487 33.333 12.83 12.83 31.97 3.56
3265 3797 4.957296 AGTAAGAAACTGGAATGTCGTGT 58.043 39.130 0.00 0.00 36.93 4.49
3268 3800 5.470368 TGAGAGTAAGAAACTGGAATGTCG 58.530 41.667 0.00 0.00 39.07 4.35
3283 3815 2.581216 ACCGACCTGTCTGAGAGTAA 57.419 50.000 0.87 0.00 0.00 2.24
3299 3831 2.169352 ACAGAAGGATGATGAGGAACCG 59.831 50.000 0.00 0.00 0.00 4.44
3316 3848 4.160329 ACCAAGGTGAAGAGATGTACAGA 58.840 43.478 0.33 0.00 0.00 3.41
3320 3852 4.838423 TCAAGACCAAGGTGAAGAGATGTA 59.162 41.667 0.00 0.00 0.00 2.29
3326 3858 3.924114 TGTTCAAGACCAAGGTGAAGA 57.076 42.857 0.00 0.00 32.15 2.87
3337 3869 3.486383 TCACCCTTCCATTGTTCAAGAC 58.514 45.455 0.00 0.00 0.00 3.01
3346 3878 5.520748 AGTTAGTCATTCACCCTTCCATT 57.479 39.130 0.00 0.00 0.00 3.16
3355 3887 8.602328 CATGAGATGAAGAAGTTAGTCATTCAC 58.398 37.037 3.04 0.62 33.09 3.18
3357 3889 8.939201 TCATGAGATGAAGAAGTTAGTCATTC 57.061 34.615 0.00 4.14 36.11 2.67
3383 3915 5.534278 TGAAAAGCACATTAGAACACCATGA 59.466 36.000 0.00 0.00 0.00 3.07
3414 3946 0.107165 GGGGGTGGCTGTAGAACATC 60.107 60.000 0.00 0.00 0.00 3.06
3472 4004 1.302431 CTGATTGTGGGACGTGGCA 60.302 57.895 0.00 0.00 0.00 4.92
3508 4040 4.682778 TGCACTTACTTGTAGAACAGGT 57.317 40.909 0.41 0.41 41.49 4.00
3521 4053 0.040067 GCTGTGGCACTTGCACTTAC 60.040 55.000 23.68 0.00 44.36 2.34
3526 4058 1.727511 GAACTGCTGTGGCACTTGCA 61.728 55.000 27.23 27.23 44.28 4.08
3547 4079 7.107542 AGAGTTACCAAACAGAGTGTTACAAA 58.892 34.615 0.00 0.00 40.14 2.83
3636 4168 2.158579 TCCACCGGCTTTTTAGGTTCTT 60.159 45.455 0.00 0.00 35.85 2.52
3643 4175 0.251430 CCCCTTCCACCGGCTTTTTA 60.251 55.000 0.00 0.00 0.00 1.52
3644 4176 1.533033 CCCCTTCCACCGGCTTTTT 60.533 57.895 0.00 0.00 0.00 1.94
3654 4186 0.987294 CTCTTCTTGCTCCCCTTCCA 59.013 55.000 0.00 0.00 0.00 3.53
3655 4187 0.393673 GCTCTTCTTGCTCCCCTTCC 60.394 60.000 0.00 0.00 0.00 3.46
3660 4192 1.748500 GCAGGCTCTTCTTGCTCCC 60.749 63.158 0.00 0.00 0.00 4.30
3665 4197 1.874562 GCTGTGCAGGCTCTTCTTG 59.125 57.895 4.55 0.00 0.00 3.02
3677 4209 0.312102 GGTTCTTGTTCAGGCTGTGC 59.688 55.000 15.27 9.09 0.00 4.57
3680 4212 2.149578 CTCTGGTTCTTGTTCAGGCTG 58.850 52.381 8.58 8.58 0.00 4.85
3684 4216 2.149578 CAGGCTCTGGTTCTTGTTCAG 58.850 52.381 0.00 0.00 0.00 3.02
3697 4229 3.082701 GGCTCAGGCTCAGGCTCT 61.083 66.667 4.26 0.00 35.88 4.09
3706 4238 2.964310 TTCAGGCTCAGGCTCAGGC 61.964 63.158 3.01 3.01 35.88 4.85
3710 4242 0.250467 TGTTGTTCAGGCTCAGGCTC 60.250 55.000 0.00 0.00 35.88 4.70
3711 4243 0.183492 TTGTTGTTCAGGCTCAGGCT 59.817 50.000 0.00 0.00 39.66 4.58
3735 4267 0.893270 TCCAGTGGTTTCCATTGCGG 60.893 55.000 9.54 0.00 39.47 5.69
3736 4268 0.523072 CTCCAGTGGTTTCCATTGCG 59.477 55.000 9.54 1.22 39.47 4.85
3769 4301 7.012799 GGACCAGAAAAATAGCTTATGGAGAAG 59.987 40.741 3.07 0.00 0.00 2.85
3770 4302 6.828785 GGACCAGAAAAATAGCTTATGGAGAA 59.171 38.462 3.07 0.00 0.00 2.87
3783 4315 4.586841 TGAACCGAAATGGACCAGAAAAAT 59.413 37.500 0.00 0.00 42.00 1.82
3788 4320 2.571653 AGATGAACCGAAATGGACCAGA 59.428 45.455 0.00 0.00 42.00 3.86
3790 4322 2.355716 GGAGATGAACCGAAATGGACCA 60.356 50.000 0.00 0.00 42.00 4.02
3792 4324 3.118592 AGAGGAGATGAACCGAAATGGAC 60.119 47.826 0.00 0.00 42.00 4.02
3793 4325 3.107601 AGAGGAGATGAACCGAAATGGA 58.892 45.455 0.00 0.00 42.00 3.41
3801 4333 4.405358 AGTGAGATTCAGAGGAGATGAACC 59.595 45.833 0.00 0.00 39.36 3.62
3850 4382 1.211212 TCCTCATCCAGGTTCTGCATG 59.789 52.381 0.00 0.00 43.95 4.06
3930 4462 2.099921 CGATCTCCTTCTGTACCTGGTG 59.900 54.545 10.23 0.00 0.00 4.17
3945 4477 5.240623 CAGGAGAGGTATATATGGCGATCTC 59.759 48.000 0.00 5.35 32.94 2.75
3960 4492 1.077005 AGAGAGCTTGACAGGAGAGGT 59.923 52.381 0.00 0.00 0.00 3.85
3974 4506 6.222389 ACTGTATGATGCTATTTGAGAGAGC 58.778 40.000 0.00 0.00 36.72 4.09
4029 4561 8.766151 GCAGGTAAGTTAATTAGACATTAGAGC 58.234 37.037 0.00 0.00 0.00 4.09
4149 4685 2.694628 AGATGTGCTGCCAGAAAACAAA 59.305 40.909 0.00 0.00 0.00 2.83
4246 4782 8.626743 CAGGAACTAGCTAATTAGCAACGGTAC 61.627 44.444 33.15 21.54 45.69 3.34
4258 4794 4.037927 TGGGCTAACAGGAACTAGCTAAT 58.962 43.478 0.00 0.00 40.37 1.73
4269 4805 6.591935 TCTGACTATTAATTGGGCTAACAGG 58.408 40.000 0.00 0.00 0.00 4.00
4277 4813 8.260818 TCTTCTGAGTTCTGACTATTAATTGGG 58.739 37.037 0.00 0.00 35.88 4.12
4278 4814 9.092876 GTCTTCTGAGTTCTGACTATTAATTGG 57.907 37.037 0.00 0.00 35.88 3.16
4282 4818 9.645059 CAATGTCTTCTGAGTTCTGACTATTAA 57.355 33.333 0.00 0.00 35.88 1.40
4283 4819 7.761704 GCAATGTCTTCTGAGTTCTGACTATTA 59.238 37.037 0.00 0.00 35.88 0.98
4284 4820 6.593382 GCAATGTCTTCTGAGTTCTGACTATT 59.407 38.462 0.00 0.00 35.88 1.73
4285 4821 6.105333 GCAATGTCTTCTGAGTTCTGACTAT 58.895 40.000 0.00 0.00 35.88 2.12
4286 4822 5.473931 GCAATGTCTTCTGAGTTCTGACTA 58.526 41.667 0.00 0.00 35.88 2.59
4287 4823 4.314121 GCAATGTCTTCTGAGTTCTGACT 58.686 43.478 0.00 0.00 39.32 3.41
4288 4824 3.434984 GGCAATGTCTTCTGAGTTCTGAC 59.565 47.826 0.00 0.00 0.00 3.51
4289 4825 3.557898 GGGCAATGTCTTCTGAGTTCTGA 60.558 47.826 0.00 0.00 0.00 3.27
4290 4826 2.746362 GGGCAATGTCTTCTGAGTTCTG 59.254 50.000 0.00 0.00 0.00 3.02
4291 4827 2.373169 TGGGCAATGTCTTCTGAGTTCT 59.627 45.455 0.00 0.00 0.00 3.01
4292 4828 2.783135 TGGGCAATGTCTTCTGAGTTC 58.217 47.619 0.00 0.00 0.00 3.01
4293 4829 2.957402 TGGGCAATGTCTTCTGAGTT 57.043 45.000 0.00 0.00 0.00 3.01
4294 4830 2.619849 CCATGGGCAATGTCTTCTGAGT 60.620 50.000 2.85 0.00 34.11 3.41
4295 4831 2.022195 CCATGGGCAATGTCTTCTGAG 58.978 52.381 2.85 0.00 34.11 3.35
4296 4832 2.133281 CCATGGGCAATGTCTTCTGA 57.867 50.000 2.85 0.00 34.11 3.27
4309 4845 4.931002 CAGTTTGAATTTTACAGCCATGGG 59.069 41.667 15.13 0.00 0.00 4.00
4310 4846 5.782047 TCAGTTTGAATTTTACAGCCATGG 58.218 37.500 7.63 7.63 0.00 3.66
4311 4847 7.062605 GTCATCAGTTTGAATTTTACAGCCATG 59.937 37.037 0.00 0.00 0.00 3.66
4312 4848 7.092716 GTCATCAGTTTGAATTTTACAGCCAT 58.907 34.615 0.00 0.00 0.00 4.40
4313 4849 6.040278 TGTCATCAGTTTGAATTTTACAGCCA 59.960 34.615 0.00 0.00 0.00 4.75
4314 4850 6.363357 GTGTCATCAGTTTGAATTTTACAGCC 59.637 38.462 0.00 0.00 0.00 4.85
4315 4851 7.141363 AGTGTCATCAGTTTGAATTTTACAGC 58.859 34.615 0.00 0.00 0.00 4.40
4316 4852 8.961092 CAAGTGTCATCAGTTTGAATTTTACAG 58.039 33.333 0.00 0.00 35.32 2.74
4317 4853 7.434897 GCAAGTGTCATCAGTTTGAATTTTACA 59.565 33.333 0.00 0.00 35.32 2.41
4335 4871 4.022935 TCAGATGGAAAATGTGCAAGTGTC 60.023 41.667 0.00 0.00 0.00 3.67
4473 5017 0.318955 GGTCGTTCGTTTCGAAGGGA 60.319 55.000 19.15 11.21 46.54 4.20
4521 5065 1.750399 CAGCCGGATGTTGGAAGGG 60.750 63.158 12.68 0.00 0.00 3.95
4531 5075 2.440796 CACCATTGCCAGCCGGAT 60.441 61.111 5.05 0.00 0.00 4.18
4535 5079 3.070576 GGGTCACCATTGCCAGCC 61.071 66.667 0.00 0.00 36.50 4.85
4614 5158 0.179018 GCTGGGGCTGGTAGTATTGG 60.179 60.000 0.00 0.00 35.22 3.16
4635 5179 3.402691 CTGCTGATGCTGCTGCTGC 62.403 63.158 22.51 22.51 40.48 5.25
4636 5180 2.794621 CTGCTGATGCTGCTGCTG 59.205 61.111 17.00 0.77 40.48 4.41
4647 5191 1.679944 GCCTGGAAATACTGCTGCTGA 60.680 52.381 13.69 0.00 0.00 4.26
4770 5320 1.133823 TGTTTTGAAGGAGCAGCCAGA 60.134 47.619 0.00 0.00 40.02 3.86
4795 5345 5.578336 GGGCAATTCAGAGCAAACTTAAATC 59.422 40.000 0.00 0.00 0.00 2.17
4995 5547 2.715763 TGGGACAGAGGGAGTAGTTT 57.284 50.000 0.00 0.00 0.00 2.66
5051 5603 6.887545 TCCATCCCATAATGTAAGACGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
5052 5604 6.419791 TCCATCCCATAATGTAAGACGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
5053 5605 5.996644 TCCATCCCATAATGTAAGACGTTT 58.003 37.500 0.00 0.00 0.00 3.60
5054 5606 5.454755 CCTCCATCCCATAATGTAAGACGTT 60.455 44.000 0.00 0.00 0.00 3.99
5055 5607 4.040461 CCTCCATCCCATAATGTAAGACGT 59.960 45.833 0.00 0.00 0.00 4.34
5056 5608 4.563580 CCCTCCATCCCATAATGTAAGACG 60.564 50.000 0.00 0.00 0.00 4.18
5057 5609 4.597507 TCCCTCCATCCCATAATGTAAGAC 59.402 45.833 0.00 0.00 0.00 3.01
5058 5610 4.838403 TCCCTCCATCCCATAATGTAAGA 58.162 43.478 0.00 0.00 0.00 2.10
5059 5611 4.599241 ACTCCCTCCATCCCATAATGTAAG 59.401 45.833 0.00 0.00 0.00 2.34
5060 5612 4.577096 ACTCCCTCCATCCCATAATGTAA 58.423 43.478 0.00 0.00 0.00 2.41
5061 5613 4.228237 ACTCCCTCCATCCCATAATGTA 57.772 45.455 0.00 0.00 0.00 2.29
5062 5614 3.080660 ACTCCCTCCATCCCATAATGT 57.919 47.619 0.00 0.00 0.00 2.71
5063 5615 4.171234 AGTACTCCCTCCATCCCATAATG 58.829 47.826 0.00 0.00 0.00 1.90
5064 5616 4.510303 AGTACTCCCTCCATCCCATAAT 57.490 45.455 0.00 0.00 0.00 1.28
5065 5617 4.295905 AAGTACTCCCTCCATCCCATAA 57.704 45.455 0.00 0.00 0.00 1.90
5066 5618 3.973973 CAAAGTACTCCCTCCATCCCATA 59.026 47.826 0.00 0.00 0.00 2.74
5067 5619 2.780010 CAAAGTACTCCCTCCATCCCAT 59.220 50.000 0.00 0.00 0.00 4.00
5068 5620 2.196595 CAAAGTACTCCCTCCATCCCA 58.803 52.381 0.00 0.00 0.00 4.37
5069 5621 2.478292 TCAAAGTACTCCCTCCATCCC 58.522 52.381 0.00 0.00 0.00 3.85
5070 5622 4.779993 ATTCAAAGTACTCCCTCCATCC 57.220 45.455 0.00 0.00 0.00 3.51
5071 5623 6.098409 TCAGTATTCAAAGTACTCCCTCCATC 59.902 42.308 0.00 0.00 30.24 3.51
5072 5624 5.964477 TCAGTATTCAAAGTACTCCCTCCAT 59.036 40.000 0.00 0.00 30.24 3.41
5073 5625 5.338632 TCAGTATTCAAAGTACTCCCTCCA 58.661 41.667 0.00 0.00 30.24 3.86
5074 5626 5.934402 TCAGTATTCAAAGTACTCCCTCC 57.066 43.478 0.00 0.00 30.24 4.30
5075 5627 8.617290 TTTTTCAGTATTCAAAGTACTCCCTC 57.383 34.615 0.00 0.00 30.24 4.30
5099 5651 7.384932 GTGCAATTTCTTACCTGTAGCATTTTT 59.615 33.333 0.00 0.00 0.00 1.94
5100 5652 6.868339 GTGCAATTTCTTACCTGTAGCATTTT 59.132 34.615 0.00 0.00 0.00 1.82
5101 5653 6.015519 TGTGCAATTTCTTACCTGTAGCATTT 60.016 34.615 0.00 0.00 0.00 2.32
5102 5654 5.476599 TGTGCAATTTCTTACCTGTAGCATT 59.523 36.000 0.00 0.00 0.00 3.56
5103 5655 5.009631 TGTGCAATTTCTTACCTGTAGCAT 58.990 37.500 0.00 0.00 0.00 3.79
5104 5656 4.393834 TGTGCAATTTCTTACCTGTAGCA 58.606 39.130 0.00 0.00 0.00 3.49
5105 5657 5.371115 TTGTGCAATTTCTTACCTGTAGC 57.629 39.130 0.00 0.00 0.00 3.58
5106 5658 7.538678 GTCATTTGTGCAATTTCTTACCTGTAG 59.461 37.037 0.00 0.00 0.00 2.74
5107 5659 7.013750 TGTCATTTGTGCAATTTCTTACCTGTA 59.986 33.333 0.00 0.00 0.00 2.74
5108 5660 6.183360 TGTCATTTGTGCAATTTCTTACCTGT 60.183 34.615 0.00 0.00 0.00 4.00
5109 5661 6.215121 TGTCATTTGTGCAATTTCTTACCTG 58.785 36.000 0.00 0.00 0.00 4.00
5110 5662 6.403866 TGTCATTTGTGCAATTTCTTACCT 57.596 33.333 0.00 0.00 0.00 3.08
5111 5663 8.028938 AGTATGTCATTTGTGCAATTTCTTACC 58.971 33.333 0.00 0.00 0.00 2.85
5112 5664 8.970691 AGTATGTCATTTGTGCAATTTCTTAC 57.029 30.769 0.00 0.00 0.00 2.34
5114 5666 9.410556 GTTAGTATGTCATTTGTGCAATTTCTT 57.589 29.630 0.00 0.00 0.00 2.52
5115 5667 8.796475 AGTTAGTATGTCATTTGTGCAATTTCT 58.204 29.630 0.00 0.00 0.00 2.52
5116 5668 8.970691 AGTTAGTATGTCATTTGTGCAATTTC 57.029 30.769 0.00 0.00 0.00 2.17
5117 5669 7.750458 CGAGTTAGTATGTCATTTGTGCAATTT 59.250 33.333 0.00 0.00 0.00 1.82
5118 5670 7.243487 CGAGTTAGTATGTCATTTGTGCAATT 58.757 34.615 0.00 0.00 0.00 2.32
5119 5671 6.675486 GCGAGTTAGTATGTCATTTGTGCAAT 60.675 38.462 0.00 0.00 0.00 3.56
5120 5672 5.390461 GCGAGTTAGTATGTCATTTGTGCAA 60.390 40.000 0.00 0.00 0.00 4.08
5121 5673 4.092821 GCGAGTTAGTATGTCATTTGTGCA 59.907 41.667 0.00 0.00 0.00 4.57
5122 5674 4.494199 GGCGAGTTAGTATGTCATTTGTGC 60.494 45.833 0.00 0.00 0.00 4.57
5123 5675 4.629634 TGGCGAGTTAGTATGTCATTTGTG 59.370 41.667 0.00 0.00 0.00 3.33
5124 5676 4.827692 TGGCGAGTTAGTATGTCATTTGT 58.172 39.130 0.00 0.00 0.00 2.83
5125 5677 5.991328 ATGGCGAGTTAGTATGTCATTTG 57.009 39.130 0.00 0.00 0.00 2.32
5126 5678 6.202954 GCTTATGGCGAGTTAGTATGTCATTT 59.797 38.462 0.00 0.00 0.00 2.32
5127 5679 5.696724 GCTTATGGCGAGTTAGTATGTCATT 59.303 40.000 0.00 0.00 0.00 2.57
5128 5680 5.230942 GCTTATGGCGAGTTAGTATGTCAT 58.769 41.667 0.00 0.00 0.00 3.06
5129 5681 4.500887 GGCTTATGGCGAGTTAGTATGTCA 60.501 45.833 0.00 0.00 42.94 3.58
5130 5682 3.988517 GGCTTATGGCGAGTTAGTATGTC 59.011 47.826 0.00 0.00 42.94 3.06
5131 5683 3.641906 AGGCTTATGGCGAGTTAGTATGT 59.358 43.478 0.00 0.00 44.18 2.29
5132 5684 4.258702 AGGCTTATGGCGAGTTAGTATG 57.741 45.455 0.00 0.00 44.18 2.39
5133 5685 6.041751 AGTTTAGGCTTATGGCGAGTTAGTAT 59.958 38.462 0.00 0.00 44.18 2.12
5134 5686 5.361857 AGTTTAGGCTTATGGCGAGTTAGTA 59.638 40.000 0.00 0.00 44.18 1.82
5135 5687 4.161754 AGTTTAGGCTTATGGCGAGTTAGT 59.838 41.667 0.00 0.00 44.18 2.24
5136 5688 4.694339 AGTTTAGGCTTATGGCGAGTTAG 58.306 43.478 0.00 0.00 44.18 2.34
5137 5689 4.748277 AGTTTAGGCTTATGGCGAGTTA 57.252 40.909 0.00 0.00 44.18 2.24
5138 5690 3.629142 AGTTTAGGCTTATGGCGAGTT 57.371 42.857 0.00 0.00 44.18 3.01
5139 5691 3.705072 AGTAGTTTAGGCTTATGGCGAGT 59.295 43.478 0.00 0.00 44.18 4.18
5140 5692 4.051922 CAGTAGTTTAGGCTTATGGCGAG 58.948 47.826 0.00 0.00 44.18 5.03
5141 5693 3.740141 GCAGTAGTTTAGGCTTATGGCGA 60.740 47.826 0.00 0.00 44.18 5.54
5142 5694 2.544267 GCAGTAGTTTAGGCTTATGGCG 59.456 50.000 0.00 0.00 44.18 5.69
5143 5695 2.544267 CGCAGTAGTTTAGGCTTATGGC 59.456 50.000 0.00 0.00 40.90 4.40
5144 5696 3.793559 ACGCAGTAGTTTAGGCTTATGG 58.206 45.455 0.00 0.00 41.94 2.74
5160 5712 4.629634 TGTTTTCCAGATACACATACGCAG 59.370 41.667 0.00 0.00 0.00 5.18
5161 5713 4.570930 TGTTTTCCAGATACACATACGCA 58.429 39.130 0.00 0.00 0.00 5.24
5162 5714 5.539582 TTGTTTTCCAGATACACATACGC 57.460 39.130 0.00 0.00 0.00 4.42
5163 5715 7.330946 TCTCTTTGTTTTCCAGATACACATACG 59.669 37.037 0.00 0.00 0.00 3.06
5164 5716 8.547967 TCTCTTTGTTTTCCAGATACACATAC 57.452 34.615 0.00 0.00 0.00 2.39
5165 5717 9.739276 AATCTCTTTGTTTTCCAGATACACATA 57.261 29.630 0.00 0.00 0.00 2.29
5166 5718 8.641498 AATCTCTTTGTTTTCCAGATACACAT 57.359 30.769 0.00 0.00 0.00 3.21
5167 5719 9.219603 CTAATCTCTTTGTTTTCCAGATACACA 57.780 33.333 0.00 0.00 0.00 3.72
5168 5720 9.436957 TCTAATCTCTTTGTTTTCCAGATACAC 57.563 33.333 0.00 0.00 0.00 2.90
5185 5737 8.247562 GCCGACATGTCTATATTTCTAATCTCT 58.752 37.037 22.95 0.00 0.00 3.10
5186 5738 8.029522 TGCCGACATGTCTATATTTCTAATCTC 58.970 37.037 22.95 0.00 0.00 2.75
5187 5739 7.896811 TGCCGACATGTCTATATTTCTAATCT 58.103 34.615 22.95 0.00 0.00 2.40
5188 5740 8.534333 TTGCCGACATGTCTATATTTCTAATC 57.466 34.615 22.95 0.00 0.00 1.75
5189 5741 8.902540 TTTGCCGACATGTCTATATTTCTAAT 57.097 30.769 22.95 0.00 0.00 1.73
5190 5742 8.609176 GTTTTGCCGACATGTCTATATTTCTAA 58.391 33.333 22.95 3.94 0.00 2.10
5191 5743 7.985184 AGTTTTGCCGACATGTCTATATTTCTA 59.015 33.333 22.95 0.00 0.00 2.10
5201 5753 1.400242 GCTCAGTTTTGCCGACATGTC 60.400 52.381 16.21 16.21 0.00 3.06
5270 5822 5.986135 CAGTTCAGCTGTTACTATACCCATC 59.014 44.000 14.67 0.00 40.27 3.51
5276 5828 6.599356 TTGTCCAGTTCAGCTGTTACTATA 57.401 37.500 14.67 7.23 43.55 1.31
5277 5829 5.483685 TTGTCCAGTTCAGCTGTTACTAT 57.516 39.130 14.67 0.00 43.55 2.12
5278 5830 4.948341 TTGTCCAGTTCAGCTGTTACTA 57.052 40.909 14.67 2.25 43.55 1.82
5280 5832 4.335594 AGTTTTGTCCAGTTCAGCTGTTAC 59.664 41.667 14.67 13.07 43.55 2.50
5281 5833 4.523083 AGTTTTGTCCAGTTCAGCTGTTA 58.477 39.130 14.67 0.00 43.55 2.41
5282 5834 3.356290 AGTTTTGTCCAGTTCAGCTGTT 58.644 40.909 14.67 0.00 43.55 3.16
5283 5835 2.945668 GAGTTTTGTCCAGTTCAGCTGT 59.054 45.455 14.67 0.00 43.55 4.40
5284 5836 2.291741 GGAGTTTTGTCCAGTTCAGCTG 59.708 50.000 7.63 7.63 44.63 4.24
5285 5837 2.173569 AGGAGTTTTGTCCAGTTCAGCT 59.826 45.455 0.00 0.00 39.34 4.24
5286 5838 2.291741 CAGGAGTTTTGTCCAGTTCAGC 59.708 50.000 0.00 0.00 39.34 4.26
5287 5839 3.545703 ACAGGAGTTTTGTCCAGTTCAG 58.454 45.455 0.00 0.00 39.34 3.02
5288 5840 3.644966 ACAGGAGTTTTGTCCAGTTCA 57.355 42.857 0.00 0.00 39.34 3.18
5289 5841 4.983671 AAACAGGAGTTTTGTCCAGTTC 57.016 40.909 1.66 0.00 45.32 3.01
5303 5855 3.517100 CTCCCATCTCTTGAGAAACAGGA 59.483 47.826 4.33 7.52 33.64 3.86
5310 5862 2.515853 TCCTAGCTCCCATCTCTTGAGA 59.484 50.000 2.59 2.59 0.00 3.27
5337 5889 6.370718 TCCTGTATTTCTAACTTTCGCTTTCC 59.629 38.462 0.00 0.00 0.00 3.13
5338 5890 7.360575 TCCTGTATTTCTAACTTTCGCTTTC 57.639 36.000 0.00 0.00 0.00 2.62
5343 5895 8.703604 TCTCATTCCTGTATTTCTAACTTTCG 57.296 34.615 0.00 0.00 0.00 3.46
5370 5922 7.231317 TCTGTTAGCTGTCCATTTCATCTTTTT 59.769 33.333 0.00 0.00 0.00 1.94
5376 5928 5.769662 TGTTTCTGTTAGCTGTCCATTTCAT 59.230 36.000 0.00 0.00 0.00 2.57
5414 5966 2.684881 CACTGCCCTCATTGTAATCCAC 59.315 50.000 0.00 0.00 0.00 4.02
5490 6042 4.171005 GCTGTAGCAACTATAACGACACA 58.829 43.478 0.00 0.00 41.59 3.72
5506 6058 2.919859 CAGAGACATGTCGTTGCTGTAG 59.080 50.000 19.85 2.33 34.09 2.74
5507 6059 2.352715 CCAGAGACATGTCGTTGCTGTA 60.353 50.000 25.15 0.00 34.09 2.74
5508 6060 1.606480 CCAGAGACATGTCGTTGCTGT 60.606 52.381 25.15 9.72 34.09 4.40
5509 6061 1.073964 CCAGAGACATGTCGTTGCTG 58.926 55.000 19.85 21.63 34.09 4.41
5784 6336 8.089597 TGTTGTAGCATTGATGTGAATGATTTT 58.910 29.630 0.00 0.00 35.65 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.