Multiple sequence alignment - TraesCS6A01G154000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G154000 chr6A 100.000 3610 0 0 1 3610 142771652 142775261 0.000000e+00 6667.0
1 TraesCS6A01G154000 chr6D 91.315 2349 135 31 743 3044 114224259 114226585 0.000000e+00 3144.0
2 TraesCS6A01G154000 chr6D 90.798 489 29 6 1 476 114223776 114224261 1.090000e-179 640.0
3 TraesCS6A01G154000 chr6D 86.944 360 32 5 3151 3502 114226594 114226946 1.220000e-104 390.0
4 TraesCS6A01G154000 chr6B 93.067 1976 87 23 930 2867 203893890 203895853 0.000000e+00 2844.0
5 TraesCS6A01G154000 chr6B 88.960 625 58 6 2881 3502 203895909 203896525 0.000000e+00 761.0
6 TraesCS6A01G154000 chr6B 84.388 237 28 6 479 708 599437365 599437599 1.300000e-54 224.0
7 TraesCS6A01G154000 chr6B 88.535 157 15 2 746 899 203893740 203893896 1.710000e-43 187.0
8 TraesCS6A01G154000 chr7D 75.381 1182 223 47 1421 2579 168297612 168296476 3.220000e-140 508.0
9 TraesCS6A01G154000 chr7D 74.016 1270 242 65 1354 2588 184500325 184501541 1.540000e-118 436.0
10 TraesCS6A01G154000 chr7D 73.228 1270 258 58 1354 2588 184523924 184522702 1.570000e-103 387.0
11 TraesCS6A01G154000 chr7B 75.381 1182 224 46 1421 2580 133707758 133706622 3.220000e-140 508.0
12 TraesCS6A01G154000 chr7B 73.907 709 141 41 1902 2588 153582469 153583155 1.000000e-60 244.0
13 TraesCS6A01G154000 chr7B 97.248 109 1 2 3503 3610 131657182 131657289 2.210000e-42 183.0
14 TraesCS6A01G154000 chr7B 96.429 112 2 2 3501 3610 164987790 164987901 2.210000e-42 183.0
15 TraesCS6A01G154000 chr7B 77.512 209 29 12 3127 3327 703957577 703957379 3.810000e-20 110.0
16 TraesCS6A01G154000 chr7B 82.400 125 21 1 3005 3129 410842122 410842245 1.370000e-19 108.0
17 TraesCS6A01G154000 chr7B 90.698 43 3 1 2937 2979 724738299 724738340 5.040000e-04 56.5
18 TraesCS6A01G154000 chr7A 75.402 1183 222 47 1421 2580 170613891 170612755 3.220000e-140 508.0
19 TraesCS6A01G154000 chr7A 74.252 1270 239 62 1354 2588 186097261 186096045 1.530000e-123 453.0
20 TraesCS6A01G154000 chr7A 73.481 1267 260 52 1354 2588 185975500 185976722 3.360000e-110 409.0
21 TraesCS6A01G154000 chr7A 82.877 146 24 1 1 145 612368412 612368557 2.930000e-26 130.0
22 TraesCS6A01G154000 chr7A 81.618 136 14 7 3198 3328 53003667 53003796 6.380000e-18 102.0
23 TraesCS6A01G154000 chrUn 78.451 594 103 15 1421 2007 91795754 91795179 7.370000e-97 364.0
24 TraesCS6A01G154000 chr2D 87.156 218 22 2 482 693 106145486 106145703 3.600000e-60 243.0
25 TraesCS6A01G154000 chr4B 85.356 239 27 4 479 710 195476182 195475945 1.300000e-59 241.0
26 TraesCS6A01G154000 chr4B 98.165 109 1 1 3503 3610 42806343 42806235 4.760000e-44 189.0
27 TraesCS6A01G154000 chr4D 85.776 232 26 3 482 707 4080420 4080650 4.660000e-59 239.0
28 TraesCS6A01G154000 chr4D 91.071 56 4 1 3439 3493 81388150 81388205 1.390000e-09 75.0
29 TraesCS6A01G154000 chr2B 84.615 234 29 3 481 708 355383273 355383505 3.630000e-55 226.0
30 TraesCS6A01G154000 chr2B 84.483 232 30 3 483 708 90015762 90015531 1.300000e-54 224.0
31 TraesCS6A01G154000 chr2B 82.474 97 17 0 3006 3102 794549678 794549582 6.420000e-13 86.1
32 TraesCS6A01G154000 chr5D 84.483 232 31 1 482 708 479382682 479382913 1.300000e-54 224.0
33 TraesCS6A01G154000 chr5D 96.429 112 3 1 3500 3610 118266972 118266861 2.210000e-42 183.0
34 TraesCS6A01G154000 chr5D 94.783 115 5 1 3496 3610 319274656 319274769 1.030000e-40 178.0
35 TraesCS6A01G154000 chr5D 78.814 236 29 9 3096 3325 324637526 324637306 4.860000e-29 139.0
36 TraesCS6A01G154000 chr5D 87.059 85 5 2 3243 3327 324637570 324637492 1.380000e-14 91.6
37 TraesCS6A01G154000 chr3D 84.188 234 31 2 481 708 593210313 593210546 4.690000e-54 222.0
38 TraesCS6A01G154000 chr3D 85.714 98 13 1 2 98 598855711 598855614 6.380000e-18 102.0
39 TraesCS6A01G154000 chr3D 80.328 122 21 3 3006 3127 560905855 560905737 4.960000e-14 89.8
40 TraesCS6A01G154000 chr5B 84.120 233 31 2 482 708 229081671 229081903 1.690000e-53 220.0
41 TraesCS6A01G154000 chr5B 98.165 109 1 1 3503 3610 124054422 124054530 4.760000e-44 189.0
42 TraesCS6A01G154000 chr5B 77.778 270 38 14 3040 3299 316529105 316528848 2.900000e-31 147.0
43 TraesCS6A01G154000 chr5B 79.870 154 20 3 1 144 643650190 643650038 6.380000e-18 102.0
44 TraesCS6A01G154000 chr5B 89.796 49 4 1 2933 2981 536044802 536044849 1.080000e-05 62.1
45 TraesCS6A01G154000 chr3A 97.248 109 3 0 3502 3610 501882136 501882028 6.160000e-43 185.0
46 TraesCS6A01G154000 chr3A 83.065 124 19 2 3005 3127 7348046 7348168 1.060000e-20 111.0
47 TraesCS6A01G154000 chr3A 84.259 108 12 1 3198 3300 267031814 267031707 2.290000e-17 100.0
48 TraesCS6A01G154000 chr1B 94.915 118 4 2 3495 3610 558936683 558936800 2.210000e-42 183.0
49 TraesCS6A01G154000 chr1B 80.690 145 26 2 1 144 170824320 170824177 1.060000e-20 111.0
50 TraesCS6A01G154000 chr1B 90.625 64 1 1 3198 3256 634754920 634754983 2.990000e-11 80.5
51 TraesCS6A01G154000 chr1A 97.222 108 3 0 3503 3610 462169263 462169370 2.210000e-42 183.0
52 TraesCS6A01G154000 chr1A 85.207 169 23 2 1 167 495276350 495276182 4.790000e-39 172.0
53 TraesCS6A01G154000 chr1A 80.952 168 27 4 2 167 557561930 557561766 1.050000e-25 128.0
54 TraesCS6A01G154000 chr1A 89.474 76 8 0 3052 3127 155074833 155074908 2.970000e-16 97.1
55 TraesCS6A01G154000 chr1A 89.706 68 5 2 3405 3471 30599736 30599670 6.420000e-13 86.1
56 TraesCS6A01G154000 chr1A 84.848 66 9 1 2929 2994 513897025 513897089 8.370000e-07 65.8
57 TraesCS6A01G154000 chr3B 82.659 173 25 5 1 170 815285404 815285574 8.080000e-32 148.0
58 TraesCS6A01G154000 chr3B 81.395 172 30 2 1 170 795229655 795229826 4.860000e-29 139.0
59 TraesCS6A01G154000 chr2A 81.988 161 26 3 10 168 637233240 637233081 2.260000e-27 134.0
60 TraesCS6A01G154000 chr5A 83.495 103 9 4 3201 3296 422878337 422878236 4.960000e-14 89.8
61 TraesCS6A01G154000 chr1D 75.829 211 24 11 2937 3130 355830302 355830102 8.310000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G154000 chr6A 142771652 142775261 3609 False 6667.000000 6667 100.000000 1 3610 1 chr6A.!!$F1 3609
1 TraesCS6A01G154000 chr6D 114223776 114226946 3170 False 1391.333333 3144 89.685667 1 3502 3 chr6D.!!$F1 3501
2 TraesCS6A01G154000 chr6B 203893740 203896525 2785 False 1264.000000 2844 90.187333 746 3502 3 chr6B.!!$F2 2756
3 TraesCS6A01G154000 chr7D 168296476 168297612 1136 True 508.000000 508 75.381000 1421 2579 1 chr7D.!!$R1 1158
4 TraesCS6A01G154000 chr7D 184500325 184501541 1216 False 436.000000 436 74.016000 1354 2588 1 chr7D.!!$F1 1234
5 TraesCS6A01G154000 chr7D 184522702 184523924 1222 True 387.000000 387 73.228000 1354 2588 1 chr7D.!!$R2 1234
6 TraesCS6A01G154000 chr7B 133706622 133707758 1136 True 508.000000 508 75.381000 1421 2580 1 chr7B.!!$R1 1159
7 TraesCS6A01G154000 chr7B 153582469 153583155 686 False 244.000000 244 73.907000 1902 2588 1 chr7B.!!$F2 686
8 TraesCS6A01G154000 chr7A 170612755 170613891 1136 True 508.000000 508 75.402000 1421 2580 1 chr7A.!!$R1 1159
9 TraesCS6A01G154000 chr7A 186096045 186097261 1216 True 453.000000 453 74.252000 1354 2588 1 chr7A.!!$R2 1234
10 TraesCS6A01G154000 chr7A 185975500 185976722 1222 False 409.000000 409 73.481000 1354 2588 1 chr7A.!!$F2 1234
11 TraesCS6A01G154000 chrUn 91795179 91795754 575 True 364.000000 364 78.451000 1421 2007 1 chrUn.!!$R1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 615 0.103026 TTCCGATGATGCGTCCTCAG 59.897 55.0 11.18 0.64 0.0 3.35 F
697 711 0.181350 GGAGGTGTTCATAGGGGCAG 59.819 60.0 0.00 0.00 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1908 1974 2.045143 AGGACTCCGGACGACCTC 60.045 66.667 15.37 0.0 0.0 3.85 R
2651 2735 1.146041 GGGTACGCATGATGGCTGA 59.854 57.895 4.83 0.0 0.0 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.129287 CCAACCATGATGCTGAACCTAAC 59.871 47.826 0.00 0.00 0.00 2.34
34 35 4.032960 ACCATGATGCTGAACCTAACAA 57.967 40.909 0.00 0.00 0.00 2.83
47 48 3.939066 ACCTAACAAGAACGAGAATGGG 58.061 45.455 0.00 0.00 0.00 4.00
52 53 1.279271 CAAGAACGAGAATGGGGTCCT 59.721 52.381 0.00 0.00 0.00 3.85
122 123 2.833582 GGAGATGGAGCGGACCGA 60.834 66.667 20.50 0.00 0.00 4.69
216 217 0.594284 AGCGATTCGGCTAAGTACGC 60.594 55.000 8.34 0.00 42.62 4.42
297 311 8.142551 AGTTAAAATACAAGGTATCGGCTAGAG 58.857 37.037 0.00 0.00 0.00 2.43
327 341 2.169352 AGAGCATGTTCTTCGCACCTAT 59.831 45.455 6.20 0.00 0.00 2.57
344 358 6.127591 CGCACCTATGAGGCTTATAATCTACT 60.128 42.308 0.37 0.00 39.63 2.57
345 359 7.262048 GCACCTATGAGGCTTATAATCTACTC 58.738 42.308 0.37 0.00 39.63 2.59
346 360 7.123547 GCACCTATGAGGCTTATAATCTACTCT 59.876 40.741 0.37 0.00 39.63 3.24
347 361 8.682710 CACCTATGAGGCTTATAATCTACTCTC 58.317 40.741 0.37 0.00 39.63 3.20
361 375 9.830186 ATAATCTACTCTCTCTCTCTCTACTCT 57.170 37.037 0.00 0.00 0.00 3.24
379 393 4.088634 ACTCTTAATGAAAATGGCAGGCA 58.911 39.130 0.00 0.00 0.00 4.75
392 406 3.556999 TGGCAGGCAGTTACTTGTTTTA 58.443 40.909 0.00 0.00 0.00 1.52
395 409 5.069781 TGGCAGGCAGTTACTTGTTTTAAAT 59.930 36.000 0.00 0.00 0.00 1.40
399 413 7.328493 GCAGGCAGTTACTTGTTTTAAATAAGG 59.672 37.037 16.34 2.27 34.33 2.69
421 435 6.624423 AGGCATGAAAAAGATACAACACATC 58.376 36.000 0.00 0.00 0.00 3.06
473 487 6.824305 ACTAGAATGCACACATTAAAAGCT 57.176 33.333 0.00 0.00 46.59 3.74
474 488 6.846350 ACTAGAATGCACACATTAAAAGCTC 58.154 36.000 0.00 0.00 46.59 4.09
475 489 5.710513 AGAATGCACACATTAAAAGCTCA 57.289 34.783 0.00 0.00 46.59 4.26
476 490 6.088016 AGAATGCACACATTAAAAGCTCAA 57.912 33.333 0.00 0.00 46.59 3.02
477 491 6.514947 AGAATGCACACATTAAAAGCTCAAA 58.485 32.000 0.00 0.00 46.59 2.69
478 492 7.156673 AGAATGCACACATTAAAAGCTCAAAT 58.843 30.769 0.00 0.00 46.59 2.32
479 493 6.956299 ATGCACACATTAAAAGCTCAAATC 57.044 33.333 0.00 0.00 30.07 2.17
480 494 5.840715 TGCACACATTAAAAGCTCAAATCA 58.159 33.333 0.00 0.00 0.00 2.57
481 495 5.921976 TGCACACATTAAAAGCTCAAATCAG 59.078 36.000 0.00 0.00 0.00 2.90
482 496 5.164022 GCACACATTAAAAGCTCAAATCAGC 60.164 40.000 0.00 0.00 39.99 4.26
483 497 5.060077 CACACATTAAAAGCTCAAATCAGCG 59.940 40.000 0.00 0.00 44.82 5.18
484 498 5.048782 ACACATTAAAAGCTCAAATCAGCGA 60.049 36.000 0.00 0.00 44.82 4.93
485 499 5.858049 CACATTAAAAGCTCAAATCAGCGAA 59.142 36.000 0.00 0.00 44.82 4.70
486 500 6.529125 CACATTAAAAGCTCAAATCAGCGAAT 59.471 34.615 0.00 0.00 44.82 3.34
487 501 6.749118 ACATTAAAAGCTCAAATCAGCGAATC 59.251 34.615 0.00 0.00 44.82 2.52
488 502 4.771590 AAAAGCTCAAATCAGCGAATCA 57.228 36.364 0.00 0.00 44.82 2.57
489 503 4.771590 AAAGCTCAAATCAGCGAATCAA 57.228 36.364 0.00 0.00 44.82 2.57
490 504 4.771590 AAGCTCAAATCAGCGAATCAAA 57.228 36.364 0.00 0.00 44.82 2.69
491 505 4.771590 AGCTCAAATCAGCGAATCAAAA 57.228 36.364 0.00 0.00 44.82 2.44
492 506 5.320549 AGCTCAAATCAGCGAATCAAAAT 57.679 34.783 0.00 0.00 44.82 1.82
493 507 5.100259 AGCTCAAATCAGCGAATCAAAATG 58.900 37.500 0.00 0.00 44.82 2.32
494 508 4.860907 GCTCAAATCAGCGAATCAAAATGT 59.139 37.500 0.00 0.00 0.00 2.71
495 509 5.220154 GCTCAAATCAGCGAATCAAAATGTG 60.220 40.000 0.00 0.00 0.00 3.21
496 510 5.162794 TCAAATCAGCGAATCAAAATGTGG 58.837 37.500 0.00 0.00 0.00 4.17
497 511 4.789012 AATCAGCGAATCAAAATGTGGT 57.211 36.364 0.00 0.00 0.00 4.16
498 512 4.789012 ATCAGCGAATCAAAATGTGGTT 57.211 36.364 0.00 0.00 31.28 3.67
499 513 3.899734 TCAGCGAATCAAAATGTGGTTG 58.100 40.909 0.00 0.00 27.56 3.77
500 514 2.988493 CAGCGAATCAAAATGTGGTTGG 59.012 45.455 0.00 0.00 27.56 3.77
501 515 2.890311 AGCGAATCAAAATGTGGTTGGA 59.110 40.909 0.00 0.00 27.56 3.53
502 516 3.511146 AGCGAATCAAAATGTGGTTGGAT 59.489 39.130 0.00 0.00 27.56 3.41
503 517 3.613737 GCGAATCAAAATGTGGTTGGATG 59.386 43.478 0.00 0.00 27.56 3.51
504 518 4.617995 GCGAATCAAAATGTGGTTGGATGA 60.618 41.667 0.00 0.00 27.56 2.92
505 519 5.653507 CGAATCAAAATGTGGTTGGATGAT 58.346 37.500 0.00 0.00 27.56 2.45
506 520 6.101332 CGAATCAAAATGTGGTTGGATGATT 58.899 36.000 0.00 0.00 38.38 2.57
507 521 7.257003 CGAATCAAAATGTGGTTGGATGATTA 58.743 34.615 0.00 0.00 36.48 1.75
508 522 7.433131 CGAATCAAAATGTGGTTGGATGATTAG 59.567 37.037 0.00 0.00 36.48 1.73
509 523 7.959658 ATCAAAATGTGGTTGGATGATTAGA 57.040 32.000 0.00 0.00 0.00 2.10
510 524 7.395190 TCAAAATGTGGTTGGATGATTAGAG 57.605 36.000 0.00 0.00 0.00 2.43
511 525 6.377996 TCAAAATGTGGTTGGATGATTAGAGG 59.622 38.462 0.00 0.00 0.00 3.69
512 526 3.931907 TGTGGTTGGATGATTAGAGGG 57.068 47.619 0.00 0.00 0.00 4.30
513 527 3.459828 TGTGGTTGGATGATTAGAGGGA 58.540 45.455 0.00 0.00 0.00 4.20
514 528 3.199946 TGTGGTTGGATGATTAGAGGGAC 59.800 47.826 0.00 0.00 0.00 4.46
515 529 3.199946 GTGGTTGGATGATTAGAGGGACA 59.800 47.826 0.00 0.00 0.00 4.02
516 530 3.455910 TGGTTGGATGATTAGAGGGACAG 59.544 47.826 0.00 0.00 0.00 3.51
517 531 3.456277 GGTTGGATGATTAGAGGGACAGT 59.544 47.826 0.00 0.00 0.00 3.55
518 532 4.446371 GTTGGATGATTAGAGGGACAGTG 58.554 47.826 0.00 0.00 0.00 3.66
519 533 3.041211 TGGATGATTAGAGGGACAGTGG 58.959 50.000 0.00 0.00 0.00 4.00
520 534 3.041946 GGATGATTAGAGGGACAGTGGT 58.958 50.000 0.00 0.00 0.00 4.16
521 535 4.223953 GGATGATTAGAGGGACAGTGGTA 58.776 47.826 0.00 0.00 0.00 3.25
522 536 4.841246 GGATGATTAGAGGGACAGTGGTAT 59.159 45.833 0.00 0.00 0.00 2.73
523 537 5.308237 GGATGATTAGAGGGACAGTGGTATT 59.692 44.000 0.00 0.00 0.00 1.89
524 538 6.183361 GGATGATTAGAGGGACAGTGGTATTT 60.183 42.308 0.00 0.00 0.00 1.40
525 539 6.636454 TGATTAGAGGGACAGTGGTATTTT 57.364 37.500 0.00 0.00 0.00 1.82
526 540 6.650120 TGATTAGAGGGACAGTGGTATTTTC 58.350 40.000 0.00 0.00 0.00 2.29
527 541 6.214615 TGATTAGAGGGACAGTGGTATTTTCA 59.785 38.462 0.00 0.00 0.00 2.69
528 542 4.559862 AGAGGGACAGTGGTATTTTCAG 57.440 45.455 0.00 0.00 0.00 3.02
529 543 3.010420 GAGGGACAGTGGTATTTTCAGC 58.990 50.000 0.00 0.00 0.00 4.26
530 544 2.092323 GGGACAGTGGTATTTTCAGCC 58.908 52.381 0.00 0.00 0.00 4.85
531 545 2.092323 GGACAGTGGTATTTTCAGCCC 58.908 52.381 0.00 0.00 0.00 5.19
532 546 2.554344 GGACAGTGGTATTTTCAGCCCA 60.554 50.000 0.00 0.00 0.00 5.36
533 547 2.488153 GACAGTGGTATTTTCAGCCCAC 59.512 50.000 0.00 0.00 46.17 4.61
535 549 1.816074 GTGGTATTTTCAGCCCACGA 58.184 50.000 0.00 0.00 38.14 4.35
536 550 2.156098 GTGGTATTTTCAGCCCACGAA 58.844 47.619 0.00 0.00 38.14 3.85
537 551 2.161609 GTGGTATTTTCAGCCCACGAAG 59.838 50.000 0.00 0.00 38.14 3.79
538 552 1.743394 GGTATTTTCAGCCCACGAAGG 59.257 52.381 0.00 0.00 37.03 3.46
539 553 2.433436 GTATTTTCAGCCCACGAAGGT 58.567 47.619 0.00 0.00 34.66 3.50
540 554 1.995376 ATTTTCAGCCCACGAAGGTT 58.005 45.000 0.00 0.00 34.66 3.50
541 555 1.314730 TTTTCAGCCCACGAAGGTTC 58.685 50.000 0.00 0.00 34.66 3.62
542 556 0.181587 TTTCAGCCCACGAAGGTTCA 59.818 50.000 0.00 0.00 34.66 3.18
543 557 0.181587 TTCAGCCCACGAAGGTTCAA 59.818 50.000 0.00 0.00 34.66 2.69
544 558 0.250295 TCAGCCCACGAAGGTTCAAG 60.250 55.000 0.00 0.00 34.66 3.02
545 559 0.535102 CAGCCCACGAAGGTTCAAGT 60.535 55.000 0.00 0.00 34.66 3.16
546 560 0.250338 AGCCCACGAAGGTTCAAGTC 60.250 55.000 0.00 0.00 34.66 3.01
547 561 1.235281 GCCCACGAAGGTTCAAGTCC 61.235 60.000 0.00 0.00 34.66 3.85
548 562 0.396811 CCCACGAAGGTTCAAGTCCT 59.603 55.000 0.00 0.00 36.81 3.85
549 563 1.512926 CCACGAAGGTTCAAGTCCTG 58.487 55.000 0.00 0.00 35.27 3.86
550 564 1.070134 CCACGAAGGTTCAAGTCCTGA 59.930 52.381 0.00 0.00 35.27 3.86
551 565 2.289694 CCACGAAGGTTCAAGTCCTGAT 60.290 50.000 0.00 0.00 35.27 2.90
552 566 2.738846 CACGAAGGTTCAAGTCCTGATG 59.261 50.000 0.00 0.00 35.27 3.07
553 567 1.734465 CGAAGGTTCAAGTCCTGATGC 59.266 52.381 0.00 0.00 35.27 3.91
554 568 2.613977 CGAAGGTTCAAGTCCTGATGCT 60.614 50.000 0.00 0.00 35.27 3.79
555 569 2.777832 AGGTTCAAGTCCTGATGCTC 57.222 50.000 0.00 0.00 32.78 4.26
556 570 1.066573 AGGTTCAAGTCCTGATGCTCG 60.067 52.381 0.00 0.00 32.78 5.03
557 571 0.723981 GTTCAAGTCCTGATGCTCGC 59.276 55.000 0.00 0.00 32.78 5.03
558 572 0.321346 TTCAAGTCCTGATGCTCGCA 59.679 50.000 0.00 0.00 32.78 5.10
559 573 0.538584 TCAAGTCCTGATGCTCGCAT 59.461 50.000 3.70 3.70 39.69 4.73
560 574 1.065926 TCAAGTCCTGATGCTCGCATT 60.066 47.619 5.79 0.00 36.70 3.56
561 575 2.168313 TCAAGTCCTGATGCTCGCATTA 59.832 45.455 5.79 0.89 36.70 1.90
562 576 3.136763 CAAGTCCTGATGCTCGCATTAT 58.863 45.455 5.79 0.00 36.70 1.28
563 577 3.482156 AGTCCTGATGCTCGCATTATT 57.518 42.857 5.79 0.00 36.70 1.40
564 578 3.397482 AGTCCTGATGCTCGCATTATTC 58.603 45.455 5.79 0.00 36.70 1.75
565 579 2.481952 GTCCTGATGCTCGCATTATTCC 59.518 50.000 5.79 0.00 36.70 3.01
566 580 2.369860 TCCTGATGCTCGCATTATTCCT 59.630 45.455 5.79 0.00 36.70 3.36
567 581 2.483106 CCTGATGCTCGCATTATTCCTG 59.517 50.000 5.79 0.00 36.70 3.86
568 582 2.483106 CTGATGCTCGCATTATTCCTGG 59.517 50.000 5.79 0.00 36.70 4.45
569 583 2.104622 TGATGCTCGCATTATTCCTGGA 59.895 45.455 5.79 0.00 36.70 3.86
570 584 2.936919 TGCTCGCATTATTCCTGGAT 57.063 45.000 0.00 0.00 0.00 3.41
571 585 3.213206 TGCTCGCATTATTCCTGGATT 57.787 42.857 0.00 0.00 0.00 3.01
572 586 4.350368 TGCTCGCATTATTCCTGGATTA 57.650 40.909 0.00 0.00 0.00 1.75
573 587 4.910195 TGCTCGCATTATTCCTGGATTAT 58.090 39.130 0.00 0.00 0.00 1.28
574 588 5.316167 TGCTCGCATTATTCCTGGATTATT 58.684 37.500 0.00 0.00 0.00 1.40
575 589 5.769662 TGCTCGCATTATTCCTGGATTATTT 59.230 36.000 0.00 0.00 0.00 1.40
576 590 6.072508 TGCTCGCATTATTCCTGGATTATTTC 60.073 38.462 0.00 0.00 0.00 2.17
577 591 6.072508 GCTCGCATTATTCCTGGATTATTTCA 60.073 38.462 0.00 0.00 0.00 2.69
578 592 7.439157 TCGCATTATTCCTGGATTATTTCAG 57.561 36.000 0.00 0.00 0.00 3.02
589 603 6.882610 TGGATTATTTCAGGATTTCCGATG 57.117 37.500 0.00 0.00 42.08 3.84
590 604 6.600388 TGGATTATTTCAGGATTTCCGATGA 58.400 36.000 0.00 0.00 42.08 2.92
591 605 7.233632 TGGATTATTTCAGGATTTCCGATGAT 58.766 34.615 0.00 0.00 42.08 2.45
592 606 7.175467 TGGATTATTTCAGGATTTCCGATGATG 59.825 37.037 0.00 0.00 42.08 3.07
593 607 4.843220 ATTTCAGGATTTCCGATGATGC 57.157 40.909 0.00 0.00 42.08 3.91
594 608 1.869774 TCAGGATTTCCGATGATGCG 58.130 50.000 0.00 0.00 42.08 4.73
595 609 1.138859 TCAGGATTTCCGATGATGCGT 59.861 47.619 0.00 0.00 42.08 5.24
596 610 1.528586 CAGGATTTCCGATGATGCGTC 59.471 52.381 0.00 0.00 42.08 5.19
597 611 0.868406 GGATTTCCGATGATGCGTCC 59.132 55.000 2.83 0.00 0.00 4.79
598 612 1.541233 GGATTTCCGATGATGCGTCCT 60.541 52.381 2.83 0.00 0.00 3.85
599 613 1.795286 GATTTCCGATGATGCGTCCTC 59.205 52.381 2.83 2.02 0.00 3.71
600 614 0.534873 TTTCCGATGATGCGTCCTCA 59.465 50.000 11.18 0.00 0.00 3.86
601 615 0.103026 TTCCGATGATGCGTCCTCAG 59.897 55.000 11.18 0.64 0.00 3.35
602 616 1.037579 TCCGATGATGCGTCCTCAGT 61.038 55.000 11.18 0.00 0.00 3.41
603 617 0.873312 CCGATGATGCGTCCTCAGTG 60.873 60.000 11.18 0.00 0.00 3.66
604 618 0.873312 CGATGATGCGTCCTCAGTGG 60.873 60.000 11.18 0.00 37.10 4.00
605 619 0.531532 GATGATGCGTCCTCAGTGGG 60.532 60.000 2.83 0.00 36.20 4.61
606 620 0.977627 ATGATGCGTCCTCAGTGGGA 60.978 55.000 2.83 0.00 36.20 4.37
607 621 1.142748 GATGCGTCCTCAGTGGGAG 59.857 63.158 0.00 0.00 43.65 4.30
614 628 3.609703 CTCAGTGGGAGGAGACCG 58.390 66.667 0.00 0.00 40.13 4.79
615 629 1.304547 CTCAGTGGGAGGAGACCGT 60.305 63.158 0.00 0.00 40.13 4.83
616 630 1.304217 TCAGTGGGAGGAGACCGTC 60.304 63.158 0.00 0.00 0.00 4.79
617 631 2.361357 AGTGGGAGGAGACCGTCG 60.361 66.667 0.00 0.00 0.00 5.12
618 632 2.360852 GTGGGAGGAGACCGTCGA 60.361 66.667 0.00 0.00 0.00 4.20
619 633 2.360852 TGGGAGGAGACCGTCGAC 60.361 66.667 5.18 5.18 0.00 4.20
620 634 3.507009 GGGAGGAGACCGTCGACG 61.507 72.222 30.33 30.33 39.44 5.12
621 635 2.435586 GGAGGAGACCGTCGACGA 60.436 66.667 37.65 0.00 43.02 4.20
622 636 2.748843 GGAGGAGACCGTCGACGAC 61.749 68.421 37.65 28.15 43.02 4.34
623 637 2.031516 GAGGAGACCGTCGACGACA 61.032 63.158 37.65 0.00 43.02 4.35
624 638 1.572085 GAGGAGACCGTCGACGACAA 61.572 60.000 37.65 0.00 43.02 3.18
625 639 1.154263 GGAGACCGTCGACGACAAG 60.154 63.158 37.65 23.15 43.02 3.16
626 640 1.154263 GAGACCGTCGACGACAAGG 60.154 63.158 37.65 22.78 43.02 3.61
627 641 1.849976 GAGACCGTCGACGACAAGGT 61.850 60.000 37.65 25.83 43.02 3.50
628 642 1.728426 GACCGTCGACGACAAGGTG 60.728 63.158 37.65 21.34 43.02 4.00
629 643 3.103911 CCGTCGACGACAAGGTGC 61.104 66.667 37.65 0.00 43.02 5.01
630 644 3.103911 CGTCGACGACAAGGTGCC 61.104 66.667 33.35 0.00 43.02 5.01
631 645 2.338984 GTCGACGACAAGGTGCCT 59.661 61.111 22.66 0.00 32.09 4.75
632 646 1.582968 GTCGACGACAAGGTGCCTA 59.417 57.895 22.66 0.00 32.09 3.93
633 647 0.731855 GTCGACGACAAGGTGCCTAC 60.732 60.000 22.66 0.00 32.09 3.18
634 648 1.800315 CGACGACAAGGTGCCTACG 60.800 63.158 0.00 9.50 0.00 3.51
635 649 1.445582 GACGACAAGGTGCCTACGG 60.446 63.158 13.48 1.79 0.00 4.02
651 665 5.659048 CCTACGGCAACTTCATAAATCTC 57.341 43.478 0.00 0.00 0.00 2.75
652 666 5.116180 CCTACGGCAACTTCATAAATCTCA 58.884 41.667 0.00 0.00 0.00 3.27
653 667 5.584649 CCTACGGCAACTTCATAAATCTCAA 59.415 40.000 0.00 0.00 0.00 3.02
654 668 5.551760 ACGGCAACTTCATAAATCTCAAG 57.448 39.130 0.00 0.00 0.00 3.02
655 669 5.245531 ACGGCAACTTCATAAATCTCAAGA 58.754 37.500 0.00 0.00 0.00 3.02
656 670 5.882557 ACGGCAACTTCATAAATCTCAAGAT 59.117 36.000 0.00 0.00 36.07 2.40
657 671 6.183360 ACGGCAACTTCATAAATCTCAAGATG 60.183 38.462 0.00 0.00 34.49 2.90
658 672 6.037500 CGGCAACTTCATAAATCTCAAGATGA 59.962 38.462 0.00 0.00 34.49 2.92
659 673 7.255035 CGGCAACTTCATAAATCTCAAGATGAT 60.255 37.037 0.00 0.00 34.49 2.45
660 674 9.060347 GGCAACTTCATAAATCTCAAGATGATA 57.940 33.333 0.00 0.00 34.49 2.15
666 680 8.992835 TCATAAATCTCAAGATGATATGTCGG 57.007 34.615 17.20 2.92 36.96 4.79
667 681 8.588472 TCATAAATCTCAAGATGATATGTCGGT 58.412 33.333 17.20 0.00 36.96 4.69
668 682 9.212641 CATAAATCTCAAGATGATATGTCGGTT 57.787 33.333 13.12 0.00 34.19 4.44
669 683 7.721286 AAATCTCAAGATGATATGTCGGTTC 57.279 36.000 0.00 0.00 34.49 3.62
670 684 5.852282 TCTCAAGATGATATGTCGGTTCA 57.148 39.130 0.00 0.00 0.00 3.18
671 685 5.836347 TCTCAAGATGATATGTCGGTTCAG 58.164 41.667 0.00 0.00 0.00 3.02
672 686 5.360999 TCTCAAGATGATATGTCGGTTCAGT 59.639 40.000 0.00 0.00 0.00 3.41
673 687 5.592054 TCAAGATGATATGTCGGTTCAGTC 58.408 41.667 0.00 0.00 0.00 3.51
674 688 5.360999 TCAAGATGATATGTCGGTTCAGTCT 59.639 40.000 0.00 0.00 0.00 3.24
675 689 5.446143 AGATGATATGTCGGTTCAGTCTC 57.554 43.478 0.00 0.00 0.00 3.36
676 690 5.136828 AGATGATATGTCGGTTCAGTCTCT 58.863 41.667 0.00 0.00 0.00 3.10
677 691 4.902443 TGATATGTCGGTTCAGTCTCTC 57.098 45.455 0.00 0.00 0.00 3.20
678 692 3.312697 TGATATGTCGGTTCAGTCTCTCG 59.687 47.826 0.00 0.00 0.00 4.04
679 693 0.811915 ATGTCGGTTCAGTCTCTCGG 59.188 55.000 0.00 0.00 0.00 4.63
680 694 0.250597 TGTCGGTTCAGTCTCTCGGA 60.251 55.000 0.00 0.00 0.00 4.55
681 695 0.448593 GTCGGTTCAGTCTCTCGGAG 59.551 60.000 0.00 0.00 0.00 4.63
682 696 0.677098 TCGGTTCAGTCTCTCGGAGG 60.677 60.000 4.96 0.00 0.00 4.30
683 697 0.961358 CGGTTCAGTCTCTCGGAGGT 60.961 60.000 4.96 0.00 0.00 3.85
684 698 0.528470 GGTTCAGTCTCTCGGAGGTG 59.472 60.000 4.96 0.00 0.00 4.00
685 699 1.249407 GTTCAGTCTCTCGGAGGTGT 58.751 55.000 4.96 0.00 0.00 4.16
686 700 1.614413 GTTCAGTCTCTCGGAGGTGTT 59.386 52.381 4.96 0.00 0.00 3.32
687 701 1.535833 TCAGTCTCTCGGAGGTGTTC 58.464 55.000 4.96 0.00 0.00 3.18
688 702 1.202891 TCAGTCTCTCGGAGGTGTTCA 60.203 52.381 4.96 0.00 0.00 3.18
689 703 1.821753 CAGTCTCTCGGAGGTGTTCAT 59.178 52.381 4.96 0.00 0.00 2.57
690 704 3.017442 CAGTCTCTCGGAGGTGTTCATA 58.983 50.000 4.96 0.00 0.00 2.15
691 705 3.066064 CAGTCTCTCGGAGGTGTTCATAG 59.934 52.174 4.96 0.00 0.00 2.23
692 706 2.359531 GTCTCTCGGAGGTGTTCATAGG 59.640 54.545 4.96 0.00 0.00 2.57
693 707 1.683917 CTCTCGGAGGTGTTCATAGGG 59.316 57.143 4.96 0.00 0.00 3.53
694 708 0.753262 CTCGGAGGTGTTCATAGGGG 59.247 60.000 0.00 0.00 0.00 4.79
695 709 1.146263 CGGAGGTGTTCATAGGGGC 59.854 63.158 0.00 0.00 0.00 5.80
696 710 1.622607 CGGAGGTGTTCATAGGGGCA 61.623 60.000 0.00 0.00 0.00 5.36
697 711 0.181350 GGAGGTGTTCATAGGGGCAG 59.819 60.000 0.00 0.00 0.00 4.85
698 712 0.181350 GAGGTGTTCATAGGGGCAGG 59.819 60.000 0.00 0.00 0.00 4.85
699 713 1.227383 GGTGTTCATAGGGGCAGGG 59.773 63.158 0.00 0.00 0.00 4.45
700 714 1.571773 GGTGTTCATAGGGGCAGGGT 61.572 60.000 0.00 0.00 0.00 4.34
701 715 0.394352 GTGTTCATAGGGGCAGGGTG 60.394 60.000 0.00 0.00 0.00 4.61
702 716 0.844661 TGTTCATAGGGGCAGGGTGT 60.845 55.000 0.00 0.00 0.00 4.16
703 717 0.394352 GTTCATAGGGGCAGGGTGTG 60.394 60.000 0.00 0.00 0.00 3.82
717 731 3.607661 TGTGCGTGCGGGTCTGTA 61.608 61.111 0.00 0.00 0.00 2.74
718 732 3.110178 GTGCGTGCGGGTCTGTAC 61.110 66.667 0.00 0.00 0.00 2.90
719 733 3.299977 TGCGTGCGGGTCTGTACT 61.300 61.111 0.00 0.00 0.00 2.73
720 734 2.809601 GCGTGCGGGTCTGTACTG 60.810 66.667 0.00 0.00 0.00 2.74
721 735 2.959372 CGTGCGGGTCTGTACTGA 59.041 61.111 0.00 0.00 0.00 3.41
722 736 1.511305 CGTGCGGGTCTGTACTGAT 59.489 57.895 5.69 0.00 0.00 2.90
723 737 0.802222 CGTGCGGGTCTGTACTGATG 60.802 60.000 5.69 1.24 0.00 3.07
724 738 0.246635 GTGCGGGTCTGTACTGATGT 59.753 55.000 5.69 0.00 0.00 3.06
725 739 0.973632 TGCGGGTCTGTACTGATGTT 59.026 50.000 5.69 0.00 0.00 2.71
726 740 1.346395 TGCGGGTCTGTACTGATGTTT 59.654 47.619 5.69 0.00 0.00 2.83
727 741 2.563620 TGCGGGTCTGTACTGATGTTTA 59.436 45.455 5.69 0.00 0.00 2.01
728 742 3.007074 TGCGGGTCTGTACTGATGTTTAA 59.993 43.478 5.69 0.00 0.00 1.52
729 743 3.998341 GCGGGTCTGTACTGATGTTTAAA 59.002 43.478 5.69 0.00 0.00 1.52
730 744 4.453136 GCGGGTCTGTACTGATGTTTAAAA 59.547 41.667 5.69 0.00 0.00 1.52
731 745 5.049267 GCGGGTCTGTACTGATGTTTAAAAA 60.049 40.000 5.69 0.00 0.00 1.94
772 786 1.602191 GTTAGCCGCACGATTTTGTG 58.398 50.000 0.00 0.00 42.81 3.33
922 939 9.875691 GAAGGCTGAGAAAAACCATTTTATATT 57.124 29.630 0.00 0.00 38.83 1.28
1011 1028 4.583073 TCGACGCCATGGCTATATATATGT 59.417 41.667 33.07 20.15 39.32 2.29
1012 1029 4.681483 CGACGCCATGGCTATATATATGTG 59.319 45.833 33.07 15.80 39.32 3.21
1014 1031 5.601662 ACGCCATGGCTATATATATGTGAC 58.398 41.667 33.07 0.00 39.32 3.67
1015 1032 5.128663 ACGCCATGGCTATATATATGTGACA 59.871 40.000 33.07 6.97 39.32 3.58
1017 1034 6.146673 CGCCATGGCTATATATATGTGACATG 59.853 42.308 33.07 24.68 39.32 3.21
1069 1087 6.688385 CCATTTGCTACACATTACAATCGAAG 59.312 38.462 0.00 0.00 0.00 3.79
1148 1166 1.074084 CCCTCATCTCGGTAGCTCCTA 59.926 57.143 0.00 0.00 0.00 2.94
1173 1191 1.731433 CCAGCTTCATCAATGGCGGG 61.731 60.000 0.00 0.00 34.26 6.13
1205 1223 2.184830 TCCGCTCGTCCGATTCGAT 61.185 57.895 7.83 0.00 36.73 3.59
1264 1285 5.746307 AGTGTCGATCGCATTACTACTAA 57.254 39.130 11.09 0.00 0.00 2.24
2373 2445 2.499205 TCGGTGCCGATGATCACC 59.501 61.111 9.48 0.00 46.95 4.02
2376 2448 1.524621 GGTGCCGATGATCACCCTG 60.525 63.158 0.00 0.00 45.26 4.45
2595 2673 1.398390 CCAAACGGCTGCTAACTCATC 59.602 52.381 0.00 0.00 0.00 2.92
2651 2735 2.344504 CGTAGCATGCTCTCATCGAT 57.655 50.000 26.57 0.00 0.00 3.59
2658 2742 1.046204 TGCTCTCATCGATCAGCCAT 58.954 50.000 14.88 0.00 0.00 4.40
2660 2744 1.000618 GCTCTCATCGATCAGCCATCA 59.999 52.381 0.00 0.00 0.00 3.07
2682 2766 1.365699 CGTACCCAGCATGTTGGTAC 58.634 55.000 24.96 22.73 45.03 3.34
2768 2866 3.786635 GTGGAGTTATCTTCACGCAGAT 58.213 45.455 0.00 0.00 39.93 2.90
2891 3031 7.321153 AGAGTGTTGACGTATAAATGCTTAGT 58.679 34.615 0.00 0.00 0.00 2.24
2895 3035 7.898309 GTGTTGACGTATAAATGCTTAGTTCAG 59.102 37.037 0.00 0.00 0.00 3.02
2900 3040 7.685594 ACGTATAAATGCTTAGTTCAGCTTTC 58.314 34.615 0.00 0.00 40.79 2.62
2909 3049 1.707427 AGTTCAGCTTTCCCCATCAGT 59.293 47.619 0.00 0.00 0.00 3.41
2924 3064 5.068460 CCCCATCAGTTTGAGTTTTTGTGTA 59.932 40.000 0.00 0.00 0.00 2.90
2926 3066 6.475402 CCCATCAGTTTGAGTTTTTGTGTAAC 59.525 38.462 0.00 0.00 37.35 2.50
2953 3093 3.876341 TGATGCATGCAGTTCTACATGA 58.124 40.909 26.69 0.00 45.23 3.07
2962 3102 3.923461 GCAGTTCTACATGATATCCGAGC 59.077 47.826 0.00 0.00 0.00 5.03
2966 3106 4.790765 TCTACATGATATCCGAGCCAAG 57.209 45.455 0.00 0.00 0.00 3.61
2988 3128 4.223923 AGAGGTCTTGAGTTCATAACCCTG 59.776 45.833 8.85 0.00 33.65 4.45
2989 3129 3.910627 AGGTCTTGAGTTCATAACCCTGT 59.089 43.478 8.85 0.00 33.65 4.00
3016 3156 4.527509 CCTACATGGCTACATCGATCTT 57.472 45.455 0.00 0.00 34.35 2.40
3018 3158 6.214191 CCTACATGGCTACATCGATCTTAT 57.786 41.667 0.00 0.00 34.35 1.73
3044 3184 7.977853 TGTTTAAGGGCTAAAATAGTCTAGACG 59.022 37.037 17.07 2.45 32.08 4.18
3049 3189 5.507650 GGGCTAAAATAGTCTAGACGTGAGG 60.508 48.000 17.07 7.01 36.20 3.86
3050 3190 5.298777 GGCTAAAATAGTCTAGACGTGAGGA 59.701 44.000 17.07 2.74 36.20 3.71
3073 3213 5.518865 AGGGGTGTTGAAATATATTGCACT 58.481 37.500 5.56 0.00 0.00 4.40
3104 3244 5.655974 TCCATCAATTCGGATTTTTGGATGA 59.344 36.000 13.47 0.00 32.63 2.92
3109 3249 6.208402 TCAATTCGGATTTTTGGATGACTTGA 59.792 34.615 0.00 0.00 0.00 3.02
3136 3276 6.183360 TGGAACATGAATTCAACATGGTATCG 60.183 38.462 13.09 0.00 44.24 2.92
3138 3278 5.192927 ACATGAATTCAACATGGTATCGGT 58.807 37.500 13.09 0.00 46.19 4.69
3146 3286 4.081142 TCAACATGGTATCGGTGACAAGAT 60.081 41.667 0.00 0.00 0.00 2.40
3147 3287 5.128008 TCAACATGGTATCGGTGACAAGATA 59.872 40.000 0.00 0.00 0.00 1.98
3175 3315 0.824109 TCAAGACCCGGCTGATACAG 59.176 55.000 0.00 0.00 34.12 2.74
3220 3361 2.259266 TTTGGTCCACGTTTAGGTCC 57.741 50.000 0.00 0.56 35.28 4.46
3225 3366 0.251297 TCCACGTTTAGGTCCGAGGA 60.251 55.000 0.00 0.00 40.67 3.71
3260 3401 6.874664 TGAAGTGTTGACGTATAAATGCCTAA 59.125 34.615 0.00 0.00 0.00 2.69
3262 3403 6.167685 AGTGTTGACGTATAAATGCCTAACA 58.832 36.000 0.00 0.00 0.00 2.41
3301 3442 1.214175 TGAGCTTTTGGGTGAACTGGA 59.786 47.619 0.00 0.00 0.00 3.86
3302 3443 2.158475 TGAGCTTTTGGGTGAACTGGAT 60.158 45.455 0.00 0.00 0.00 3.41
3303 3444 2.229784 GAGCTTTTGGGTGAACTGGATG 59.770 50.000 0.00 0.00 0.00 3.51
3304 3445 1.963515 GCTTTTGGGTGAACTGGATGT 59.036 47.619 0.00 0.00 0.00 3.06
3305 3446 2.288395 GCTTTTGGGTGAACTGGATGTG 60.288 50.000 0.00 0.00 0.00 3.21
3306 3447 1.993956 TTTGGGTGAACTGGATGTGG 58.006 50.000 0.00 0.00 0.00 4.17
3313 3454 0.250901 GAACTGGATGTGGCTGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
3338 3485 3.942115 GCAGTTCTACAAAGGGGATCTTC 59.058 47.826 0.00 0.00 33.94 2.87
3365 3512 3.485463 TCTGTCGAGGGATTGTTTGTT 57.515 42.857 0.00 0.00 0.00 2.83
3377 3524 0.768622 TGTTTGTTGGGTCCCTCGAT 59.231 50.000 10.00 0.00 0.00 3.59
3416 3563 4.073293 CACACAAGGTGGTCTAAGAACT 57.927 45.455 1.07 0.00 44.04 3.01
3503 3652 9.450807 AAGTTTTCTCGAAAAATGTATCTTGTG 57.549 29.630 6.41 0.00 41.37 3.33
3504 3653 8.621286 AGTTTTCTCGAAAAATGTATCTTGTGT 58.379 29.630 6.41 0.00 41.37 3.72
3505 3654 9.233232 GTTTTCTCGAAAAATGTATCTTGTGTT 57.767 29.630 6.41 0.00 41.37 3.32
3506 3655 8.781067 TTTCTCGAAAAATGTATCTTGTGTTG 57.219 30.769 0.00 0.00 0.00 3.33
3507 3656 6.898041 TCTCGAAAAATGTATCTTGTGTTGG 58.102 36.000 0.00 0.00 0.00 3.77
3508 3657 6.007936 TCGAAAAATGTATCTTGTGTTGGG 57.992 37.500 0.00 0.00 0.00 4.12
3509 3658 5.765677 TCGAAAAATGTATCTTGTGTTGGGA 59.234 36.000 0.00 0.00 0.00 4.37
3510 3659 6.263392 TCGAAAAATGTATCTTGTGTTGGGAA 59.737 34.615 0.00 0.00 0.00 3.97
3511 3660 6.920758 CGAAAAATGTATCTTGTGTTGGGAAA 59.079 34.615 0.00 0.00 0.00 3.13
3512 3661 7.096230 CGAAAAATGTATCTTGTGTTGGGAAAC 60.096 37.037 0.00 0.00 0.00 2.78
3513 3662 5.371115 AATGTATCTTGTGTTGGGAAACG 57.629 39.130 0.00 0.00 0.00 3.60
3514 3663 2.550606 TGTATCTTGTGTTGGGAAACGC 59.449 45.455 0.00 0.00 0.00 4.84
3515 3664 1.686355 ATCTTGTGTTGGGAAACGCA 58.314 45.000 0.93 0.93 40.94 5.24
3516 3665 1.021202 TCTTGTGTTGGGAAACGCAG 58.979 50.000 5.16 1.65 43.10 5.18
3518 3667 1.944024 CTTGTGTTGGGAAACGCAGTA 59.056 47.619 5.16 0.00 45.00 2.74
3519 3668 2.264005 TGTGTTGGGAAACGCAGTAT 57.736 45.000 0.93 0.00 45.00 2.12
3520 3669 2.577700 TGTGTTGGGAAACGCAGTATT 58.422 42.857 0.93 0.00 45.00 1.89
3521 3670 2.952978 TGTGTTGGGAAACGCAGTATTT 59.047 40.909 0.93 0.00 45.00 1.40
3522 3671 3.003897 TGTGTTGGGAAACGCAGTATTTC 59.996 43.478 0.93 0.00 45.00 2.17
3523 3672 3.003897 GTGTTGGGAAACGCAGTATTTCA 59.996 43.478 0.00 0.00 45.00 2.69
3524 3673 3.632604 TGTTGGGAAACGCAGTATTTCAA 59.367 39.130 0.00 0.00 45.00 2.69
3525 3674 4.098044 TGTTGGGAAACGCAGTATTTCAAA 59.902 37.500 0.00 0.00 45.00 2.69
3526 3675 4.920640 TGGGAAACGCAGTATTTCAAAA 57.079 36.364 0.00 0.00 45.00 2.44
3527 3676 5.263968 TGGGAAACGCAGTATTTCAAAAA 57.736 34.783 0.00 0.00 45.00 1.94
3549 3698 6.949352 AAAAATCCTATGATCACGCAAGAT 57.051 33.333 0.00 0.00 43.62 2.40
3550 3699 6.551385 AAAATCCTATGATCACGCAAGATC 57.449 37.500 0.00 8.11 43.69 2.75
3551 3700 5.480642 AATCCTATGATCACGCAAGATCT 57.519 39.130 14.33 0.00 43.76 2.75
3552 3701 6.596309 AATCCTATGATCACGCAAGATCTA 57.404 37.500 14.33 4.31 43.76 1.98
3553 3702 6.788598 ATCCTATGATCACGCAAGATCTAT 57.211 37.500 14.33 9.67 43.76 1.98
3554 3703 6.201226 TCCTATGATCACGCAAGATCTATC 57.799 41.667 14.33 0.00 43.76 2.08
3555 3704 5.948758 TCCTATGATCACGCAAGATCTATCT 59.051 40.000 14.33 0.00 43.76 1.98
3556 3705 7.112779 TCCTATGATCACGCAAGATCTATCTA 58.887 38.462 14.33 0.00 43.76 1.98
3557 3706 7.281999 TCCTATGATCACGCAAGATCTATCTAG 59.718 40.741 14.33 10.18 43.76 2.43
3558 3707 5.635417 TGATCACGCAAGATCTATCTAGG 57.365 43.478 14.33 0.00 43.76 3.02
3559 3708 5.073428 TGATCACGCAAGATCTATCTAGGT 58.927 41.667 14.33 0.00 43.76 3.08
3560 3709 4.837896 TCACGCAAGATCTATCTAGGTG 57.162 45.455 0.00 9.79 43.62 4.00
3561 3710 4.461198 TCACGCAAGATCTATCTAGGTGA 58.539 43.478 0.00 12.74 37.75 4.02
3562 3711 5.073428 TCACGCAAGATCTATCTAGGTGAT 58.927 41.667 0.00 0.00 36.48 3.06
3563 3712 5.048434 TCACGCAAGATCTATCTAGGTGATG 60.048 44.000 0.00 0.00 36.48 3.07
3564 3713 4.172505 CGCAAGATCTATCTAGGTGATGC 58.827 47.826 0.00 0.00 43.02 3.91
3565 3714 4.321527 CGCAAGATCTATCTAGGTGATGCA 60.322 45.833 0.00 0.00 34.51 3.96
3566 3715 5.624052 CGCAAGATCTATCTAGGTGATGCAT 60.624 44.000 0.00 0.00 34.51 3.96
3567 3716 6.405176 CGCAAGATCTATCTAGGTGATGCATA 60.405 42.308 0.00 0.00 34.51 3.14
3568 3717 6.979817 GCAAGATCTATCTAGGTGATGCATAG 59.020 42.308 0.00 0.00 35.76 2.23
3569 3718 6.713762 AGATCTATCTAGGTGATGCATAGC 57.286 41.667 0.00 0.00 36.65 2.97
3570 3719 6.193504 AGATCTATCTAGGTGATGCATAGCA 58.806 40.000 0.00 0.00 38.03 3.49
3571 3720 6.666980 AGATCTATCTAGGTGATGCATAGCAA 59.333 38.462 0.00 0.00 37.47 3.91
3572 3721 6.030548 TCTATCTAGGTGATGCATAGCAAC 57.969 41.667 0.00 0.00 43.62 4.17
3573 3722 3.097877 TCTAGGTGATGCATAGCAACG 57.902 47.619 0.00 0.00 43.62 4.10
3574 3723 2.693074 TCTAGGTGATGCATAGCAACGA 59.307 45.455 0.00 0.00 43.62 3.85
3575 3724 1.945387 AGGTGATGCATAGCAACGAG 58.055 50.000 0.00 0.00 43.62 4.18
3576 3725 1.482182 AGGTGATGCATAGCAACGAGA 59.518 47.619 0.00 0.00 43.62 4.04
3577 3726 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
3578 3727 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
3579 3728 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
3580 3729 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
3581 3730 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
3582 3731 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
3583 3732 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
3584 3733 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
3585 3734 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
3586 3735 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
3587 3736 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
3588 3737 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
3589 3738 0.178958 AACGAGAGGGGAGAGTGTGT 60.179 55.000 0.00 0.00 0.00 3.72
3590 3739 0.609681 ACGAGAGGGGAGAGTGTGTC 60.610 60.000 0.00 0.00 0.00 3.67
3591 3740 1.316706 CGAGAGGGGAGAGTGTGTCC 61.317 65.000 0.00 0.00 0.00 4.02
3592 3741 0.251832 GAGAGGGGAGAGTGTGTCCA 60.252 60.000 0.00 0.00 35.57 4.02
3593 3742 0.543174 AGAGGGGAGAGTGTGTCCAC 60.543 60.000 0.00 0.00 42.17 4.02
3594 3743 1.878656 GAGGGGAGAGTGTGTCCACG 61.879 65.000 0.00 0.00 46.56 4.94
3595 3744 2.207924 GGGGAGAGTGTGTCCACGT 61.208 63.158 0.00 0.00 46.56 4.49
3596 3745 0.896940 GGGGAGAGTGTGTCCACGTA 60.897 60.000 0.00 0.00 46.56 3.57
3597 3746 0.243095 GGGAGAGTGTGTCCACGTAC 59.757 60.000 0.00 0.00 46.56 3.67
3598 3747 0.243095 GGAGAGTGTGTCCACGTACC 59.757 60.000 0.00 0.00 46.56 3.34
3599 3748 0.243095 GAGAGTGTGTCCACGTACCC 59.757 60.000 0.00 0.00 46.56 3.69
3600 3749 0.178970 AGAGTGTGTCCACGTACCCT 60.179 55.000 0.00 0.00 46.56 4.34
3601 3750 0.243095 GAGTGTGTCCACGTACCCTC 59.757 60.000 0.00 0.00 46.56 4.30
3602 3751 1.080974 GTGTGTCCACGTACCCTCG 60.081 63.158 0.00 0.00 0.00 4.63
3603 3752 1.529010 TGTGTCCACGTACCCTCGT 60.529 57.895 0.00 0.00 45.10 4.18
3604 3753 0.250684 TGTGTCCACGTACCCTCGTA 60.251 55.000 0.00 0.00 42.27 3.43
3605 3754 0.449388 GTGTCCACGTACCCTCGTAG 59.551 60.000 0.00 0.00 42.27 3.51
3606 3755 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
3607 3756 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
3608 3757 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
3609 3758 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.971959 TTCAGCATCATGGTTGGGGC 60.972 55.000 0.00 0.00 0.00 5.80
8 9 0.819582 GTTCAGCATCATGGTTGGGG 59.180 55.000 0.00 0.00 0.00 4.96
32 33 1.279271 AGGACCCCATTCTCGTTCTTG 59.721 52.381 0.00 0.00 0.00 3.02
34 35 1.555533 GAAGGACCCCATTCTCGTTCT 59.444 52.381 0.00 0.00 31.49 3.01
62 63 2.610859 GGAGAACCTCAGCCCCCA 60.611 66.667 0.00 0.00 31.08 4.96
67 68 2.948720 AGGTGCGGAGAACCTCAGC 61.949 63.158 11.22 11.22 45.13 4.26
134 135 1.484444 AAGCTTTCGCCTCCTCCTGT 61.484 55.000 0.00 0.00 36.60 4.00
145 146 6.302615 CACAAGTAAAGATCTCAAGCTTTCG 58.697 40.000 0.00 0.00 40.18 3.46
156 157 8.523658 AGAAAATTTAGGGCACAAGTAAAGATC 58.476 33.333 0.00 0.00 0.00 2.75
164 165 6.986231 ACTTCAAAGAAAATTTAGGGCACAAG 59.014 34.615 0.00 0.00 0.00 3.16
166 167 6.478512 ACTTCAAAGAAAATTTAGGGCACA 57.521 33.333 0.00 0.00 0.00 4.57
216 217 7.718334 ATAATTTTGAGGAGTTAAACAGGGG 57.282 36.000 0.00 0.00 0.00 4.79
269 283 6.885922 AGCCGATACCTTGTATTTTAACTCT 58.114 36.000 0.00 0.00 0.00 3.24
297 311 3.205784 AGAACATGCTCTTAGGGCATC 57.794 47.619 17.68 7.36 46.94 3.91
318 332 4.772624 AGATTATAAGCCTCATAGGTGCGA 59.227 41.667 0.00 0.00 37.80 5.10
327 341 7.984475 AGAGAGAGAGTAGATTATAAGCCTCA 58.016 38.462 8.92 0.00 0.00 3.86
344 358 9.967451 TTTTCATTAAGAGTAGAGAGAGAGAGA 57.033 33.333 0.00 0.00 0.00 3.10
347 361 9.748708 CCATTTTCATTAAGAGTAGAGAGAGAG 57.251 37.037 0.00 0.00 0.00 3.20
361 375 4.888326 AACTGCCTGCCATTTTCATTAA 57.112 36.364 0.00 0.00 0.00 1.40
392 406 9.423061 GTGTTGTATCTTTTTCATGCCTTATTT 57.577 29.630 0.00 0.00 0.00 1.40
395 409 7.517614 TGTGTTGTATCTTTTTCATGCCTTA 57.482 32.000 0.00 0.00 0.00 2.69
399 413 9.571810 TTATGATGTGTTGTATCTTTTTCATGC 57.428 29.630 0.00 0.00 0.00 4.06
421 435 7.817478 TGTGAAAGACGGGTATATATGCTTATG 59.183 37.037 2.46 0.00 0.00 1.90
473 487 5.162794 CCACATTTTGATTCGCTGATTTGA 58.837 37.500 0.00 0.00 0.00 2.69
474 488 4.925054 ACCACATTTTGATTCGCTGATTTG 59.075 37.500 0.00 0.00 0.00 2.32
475 489 5.138125 ACCACATTTTGATTCGCTGATTT 57.862 34.783 0.00 0.00 0.00 2.17
476 490 4.789012 ACCACATTTTGATTCGCTGATT 57.211 36.364 0.00 0.00 0.00 2.57
477 491 4.487948 CAACCACATTTTGATTCGCTGAT 58.512 39.130 0.00 0.00 0.00 2.90
478 492 3.305267 CCAACCACATTTTGATTCGCTGA 60.305 43.478 0.00 0.00 0.00 4.26
479 493 2.988493 CCAACCACATTTTGATTCGCTG 59.012 45.455 0.00 0.00 0.00 5.18
480 494 2.890311 TCCAACCACATTTTGATTCGCT 59.110 40.909 0.00 0.00 0.00 4.93
481 495 3.296322 TCCAACCACATTTTGATTCGC 57.704 42.857 0.00 0.00 0.00 4.70
482 496 5.058149 TCATCCAACCACATTTTGATTCG 57.942 39.130 0.00 0.00 0.00 3.34
483 497 8.469200 TCTAATCATCCAACCACATTTTGATTC 58.531 33.333 0.00 0.00 34.94 2.52
484 498 8.365060 TCTAATCATCCAACCACATTTTGATT 57.635 30.769 0.00 0.00 36.57 2.57
485 499 7.069085 CCTCTAATCATCCAACCACATTTTGAT 59.931 37.037 0.00 0.00 0.00 2.57
486 500 6.377996 CCTCTAATCATCCAACCACATTTTGA 59.622 38.462 0.00 0.00 0.00 2.69
487 501 6.406177 CCCTCTAATCATCCAACCACATTTTG 60.406 42.308 0.00 0.00 0.00 2.44
488 502 5.658190 CCCTCTAATCATCCAACCACATTTT 59.342 40.000 0.00 0.00 0.00 1.82
489 503 5.044179 TCCCTCTAATCATCCAACCACATTT 60.044 40.000 0.00 0.00 0.00 2.32
490 504 4.478317 TCCCTCTAATCATCCAACCACATT 59.522 41.667 0.00 0.00 0.00 2.71
491 505 4.047166 TCCCTCTAATCATCCAACCACAT 58.953 43.478 0.00 0.00 0.00 3.21
492 506 3.199946 GTCCCTCTAATCATCCAACCACA 59.800 47.826 0.00 0.00 0.00 4.17
493 507 3.199946 TGTCCCTCTAATCATCCAACCAC 59.800 47.826 0.00 0.00 0.00 4.16
494 508 3.455910 CTGTCCCTCTAATCATCCAACCA 59.544 47.826 0.00 0.00 0.00 3.67
495 509 3.456277 ACTGTCCCTCTAATCATCCAACC 59.544 47.826 0.00 0.00 0.00 3.77
496 510 4.446371 CACTGTCCCTCTAATCATCCAAC 58.554 47.826 0.00 0.00 0.00 3.77
497 511 3.455910 CCACTGTCCCTCTAATCATCCAA 59.544 47.826 0.00 0.00 0.00 3.53
498 512 3.041211 CCACTGTCCCTCTAATCATCCA 58.959 50.000 0.00 0.00 0.00 3.41
499 513 3.041946 ACCACTGTCCCTCTAATCATCC 58.958 50.000 0.00 0.00 0.00 3.51
500 514 6.426646 AATACCACTGTCCCTCTAATCATC 57.573 41.667 0.00 0.00 0.00 2.92
501 515 6.831664 AAATACCACTGTCCCTCTAATCAT 57.168 37.500 0.00 0.00 0.00 2.45
502 516 6.214615 TGAAAATACCACTGTCCCTCTAATCA 59.785 38.462 0.00 0.00 0.00 2.57
503 517 6.650120 TGAAAATACCACTGTCCCTCTAATC 58.350 40.000 0.00 0.00 0.00 1.75
504 518 6.636454 TGAAAATACCACTGTCCCTCTAAT 57.364 37.500 0.00 0.00 0.00 1.73
505 519 5.570844 GCTGAAAATACCACTGTCCCTCTAA 60.571 44.000 0.00 0.00 0.00 2.10
506 520 4.081087 GCTGAAAATACCACTGTCCCTCTA 60.081 45.833 0.00 0.00 0.00 2.43
507 521 3.307762 GCTGAAAATACCACTGTCCCTCT 60.308 47.826 0.00 0.00 0.00 3.69
508 522 3.010420 GCTGAAAATACCACTGTCCCTC 58.990 50.000 0.00 0.00 0.00 4.30
509 523 2.290960 GGCTGAAAATACCACTGTCCCT 60.291 50.000 0.00 0.00 0.00 4.20
510 524 2.092323 GGCTGAAAATACCACTGTCCC 58.908 52.381 0.00 0.00 0.00 4.46
511 525 2.092323 GGGCTGAAAATACCACTGTCC 58.908 52.381 0.00 0.00 0.00 4.02
512 526 2.790433 TGGGCTGAAAATACCACTGTC 58.210 47.619 0.00 0.00 0.00 3.51
513 527 2.969821 TGGGCTGAAAATACCACTGT 57.030 45.000 0.00 0.00 0.00 3.55
517 531 2.432444 CTTCGTGGGCTGAAAATACCA 58.568 47.619 0.00 0.00 0.00 3.25
518 532 1.743394 CCTTCGTGGGCTGAAAATACC 59.257 52.381 0.00 0.00 0.00 2.73
519 533 2.433436 ACCTTCGTGGGCTGAAAATAC 58.567 47.619 2.69 0.00 41.11 1.89
520 534 2.871096 ACCTTCGTGGGCTGAAAATA 57.129 45.000 2.69 0.00 41.11 1.40
521 535 1.886542 GAACCTTCGTGGGCTGAAAAT 59.113 47.619 2.69 0.00 41.11 1.82
522 536 1.314730 GAACCTTCGTGGGCTGAAAA 58.685 50.000 2.69 0.00 41.11 2.29
523 537 0.181587 TGAACCTTCGTGGGCTGAAA 59.818 50.000 2.69 0.00 41.11 2.69
524 538 0.181587 TTGAACCTTCGTGGGCTGAA 59.818 50.000 2.69 0.00 41.11 3.02
525 539 0.250295 CTTGAACCTTCGTGGGCTGA 60.250 55.000 2.69 0.00 41.11 4.26
526 540 0.535102 ACTTGAACCTTCGTGGGCTG 60.535 55.000 2.69 0.00 41.11 4.85
527 541 0.250338 GACTTGAACCTTCGTGGGCT 60.250 55.000 2.69 0.00 41.11 5.19
528 542 1.235281 GGACTTGAACCTTCGTGGGC 61.235 60.000 2.69 0.00 41.11 5.36
529 543 0.396811 AGGACTTGAACCTTCGTGGG 59.603 55.000 2.69 0.00 41.11 4.61
530 544 1.070134 TCAGGACTTGAACCTTCGTGG 59.930 52.381 0.00 0.00 42.93 4.94
531 545 2.526304 TCAGGACTTGAACCTTCGTG 57.474 50.000 0.00 0.00 35.35 4.35
532 546 2.872038 GCATCAGGACTTGAACCTTCGT 60.872 50.000 0.00 0.00 39.77 3.85
533 547 1.734465 GCATCAGGACTTGAACCTTCG 59.266 52.381 0.00 0.00 39.77 3.79
534 548 3.006247 GAGCATCAGGACTTGAACCTTC 58.994 50.000 0.00 0.00 39.77 3.46
535 549 2.613977 CGAGCATCAGGACTTGAACCTT 60.614 50.000 0.00 0.00 39.77 3.50
536 550 1.066573 CGAGCATCAGGACTTGAACCT 60.067 52.381 0.00 0.00 39.77 3.50
537 551 1.363744 CGAGCATCAGGACTTGAACC 58.636 55.000 0.00 0.00 39.77 3.62
538 552 0.723981 GCGAGCATCAGGACTTGAAC 59.276 55.000 0.00 0.00 39.77 3.18
539 553 0.321346 TGCGAGCATCAGGACTTGAA 59.679 50.000 0.00 0.00 39.77 2.69
540 554 0.538584 ATGCGAGCATCAGGACTTGA 59.461 50.000 4.52 0.00 40.85 3.02
541 555 1.376543 AATGCGAGCATCAGGACTTG 58.623 50.000 11.26 0.00 35.31 3.16
542 556 2.988010 TAATGCGAGCATCAGGACTT 57.012 45.000 11.26 0.00 35.31 3.01
543 557 3.397482 GAATAATGCGAGCATCAGGACT 58.603 45.455 11.26 0.00 35.31 3.85
544 558 2.481952 GGAATAATGCGAGCATCAGGAC 59.518 50.000 11.26 3.05 35.31 3.85
545 559 2.369860 AGGAATAATGCGAGCATCAGGA 59.630 45.455 11.26 0.00 35.31 3.86
546 560 2.483106 CAGGAATAATGCGAGCATCAGG 59.517 50.000 11.26 0.00 35.31 3.86
547 561 2.483106 CCAGGAATAATGCGAGCATCAG 59.517 50.000 11.26 0.00 35.31 2.90
548 562 2.104622 TCCAGGAATAATGCGAGCATCA 59.895 45.455 11.26 0.00 35.31 3.07
549 563 2.771089 TCCAGGAATAATGCGAGCATC 58.229 47.619 11.26 0.00 35.31 3.91
550 564 2.936919 TCCAGGAATAATGCGAGCAT 57.063 45.000 4.52 4.52 38.46 3.79
551 565 2.936919 ATCCAGGAATAATGCGAGCA 57.063 45.000 0.00 0.00 0.00 4.26
552 566 5.886960 AATAATCCAGGAATAATGCGAGC 57.113 39.130 0.00 0.00 0.00 5.03
553 567 7.439157 TGAAATAATCCAGGAATAATGCGAG 57.561 36.000 0.00 0.00 0.00 5.03
554 568 7.439157 CTGAAATAATCCAGGAATAATGCGA 57.561 36.000 0.00 0.00 0.00 5.10
565 579 6.712095 TCATCGGAAATCCTGAAATAATCCAG 59.288 38.462 0.00 0.00 0.00 3.86
566 580 6.600388 TCATCGGAAATCCTGAAATAATCCA 58.400 36.000 0.00 0.00 0.00 3.41
567 581 7.533426 CATCATCGGAAATCCTGAAATAATCC 58.467 38.462 0.00 0.00 0.00 3.01
568 582 7.025963 GCATCATCGGAAATCCTGAAATAATC 58.974 38.462 0.00 0.00 0.00 1.75
569 583 6.348786 CGCATCATCGGAAATCCTGAAATAAT 60.349 38.462 0.00 0.00 0.00 1.28
570 584 5.049474 CGCATCATCGGAAATCCTGAAATAA 60.049 40.000 0.00 0.00 0.00 1.40
571 585 4.452114 CGCATCATCGGAAATCCTGAAATA 59.548 41.667 0.00 0.00 0.00 1.40
572 586 3.251729 CGCATCATCGGAAATCCTGAAAT 59.748 43.478 0.00 0.00 0.00 2.17
573 587 2.613595 CGCATCATCGGAAATCCTGAAA 59.386 45.455 0.00 0.00 0.00 2.69
574 588 2.212652 CGCATCATCGGAAATCCTGAA 58.787 47.619 0.00 0.00 0.00 3.02
575 589 1.138859 ACGCATCATCGGAAATCCTGA 59.861 47.619 0.00 0.00 0.00 3.86
576 590 1.528586 GACGCATCATCGGAAATCCTG 59.471 52.381 0.00 0.00 0.00 3.86
577 591 1.541233 GGACGCATCATCGGAAATCCT 60.541 52.381 0.00 0.00 0.00 3.24
578 592 0.868406 GGACGCATCATCGGAAATCC 59.132 55.000 0.00 0.00 0.00 3.01
579 593 1.795286 GAGGACGCATCATCGGAAATC 59.205 52.381 0.00 0.00 0.00 2.17
580 594 1.138859 TGAGGACGCATCATCGGAAAT 59.861 47.619 0.00 0.00 38.53 2.17
581 595 0.534873 TGAGGACGCATCATCGGAAA 59.465 50.000 0.00 0.00 38.53 3.13
582 596 0.103026 CTGAGGACGCATCATCGGAA 59.897 55.000 0.00 0.00 43.42 4.30
583 597 1.037579 ACTGAGGACGCATCATCGGA 61.038 55.000 10.60 0.00 43.42 4.55
584 598 0.873312 CACTGAGGACGCATCATCGG 60.873 60.000 1.08 1.08 45.68 4.18
585 599 0.873312 CCACTGAGGACGCATCATCG 60.873 60.000 0.00 0.00 38.53 3.84
586 600 0.531532 CCCACTGAGGACGCATCATC 60.532 60.000 0.00 0.00 41.22 2.92
587 601 0.977627 TCCCACTGAGGACGCATCAT 60.978 55.000 0.00 0.00 41.22 2.45
588 602 1.607801 CTCCCACTGAGGACGCATCA 61.608 60.000 0.00 0.00 41.22 3.07
589 603 1.142748 CTCCCACTGAGGACGCATC 59.857 63.158 0.00 0.00 41.22 3.91
590 604 3.303189 CTCCCACTGAGGACGCAT 58.697 61.111 0.00 0.00 41.22 4.73
597 611 1.304547 ACGGTCTCCTCCCACTGAG 60.305 63.158 0.00 0.00 41.07 3.35
598 612 1.304217 GACGGTCTCCTCCCACTGA 60.304 63.158 0.00 0.00 0.00 3.41
599 613 2.701780 CGACGGTCTCCTCCCACTG 61.702 68.421 6.57 0.00 0.00 3.66
600 614 2.361357 CGACGGTCTCCTCCCACT 60.361 66.667 6.57 0.00 0.00 4.00
601 615 2.360852 TCGACGGTCTCCTCCCAC 60.361 66.667 6.57 0.00 0.00 4.61
602 616 2.360852 GTCGACGGTCTCCTCCCA 60.361 66.667 0.00 0.00 0.00 4.37
603 617 3.507009 CGTCGACGGTCTCCTCCC 61.507 72.222 29.70 0.00 35.37 4.30
604 618 2.435586 TCGTCGACGGTCTCCTCC 60.436 66.667 35.05 0.00 40.29 4.30
605 619 1.572085 TTGTCGTCGACGGTCTCCTC 61.572 60.000 35.05 17.31 40.29 3.71
606 620 1.575576 CTTGTCGTCGACGGTCTCCT 61.576 60.000 35.05 0.00 40.29 3.69
607 621 1.154263 CTTGTCGTCGACGGTCTCC 60.154 63.158 35.05 18.76 40.29 3.71
608 622 1.154263 CCTTGTCGTCGACGGTCTC 60.154 63.158 35.05 22.50 40.29 3.36
609 623 1.895707 ACCTTGTCGTCGACGGTCT 60.896 57.895 35.05 11.26 40.29 3.85
610 624 1.728426 CACCTTGTCGTCGACGGTC 60.728 63.158 35.05 26.92 40.29 4.79
611 625 2.333938 CACCTTGTCGTCGACGGT 59.666 61.111 35.05 22.47 40.29 4.83
612 626 3.103911 GCACCTTGTCGTCGACGG 61.104 66.667 35.05 21.82 40.29 4.79
613 627 2.191354 TAGGCACCTTGTCGTCGACG 62.191 60.000 31.30 31.30 41.45 5.12
614 628 0.731855 GTAGGCACCTTGTCGTCGAC 60.732 60.000 18.51 18.51 0.00 4.20
615 629 1.582968 GTAGGCACCTTGTCGTCGA 59.417 57.895 0.00 0.00 0.00 4.20
616 630 1.800315 CGTAGGCACCTTGTCGTCG 60.800 63.158 0.00 0.00 0.00 5.12
617 631 1.445582 CCGTAGGCACCTTGTCGTC 60.446 63.158 0.00 0.00 46.14 4.20
618 632 2.654877 CCGTAGGCACCTTGTCGT 59.345 61.111 0.00 0.00 46.14 4.34
630 644 6.535150 TCTTGAGATTTATGAAGTTGCCGTAG 59.465 38.462 0.00 0.00 0.00 3.51
631 645 6.403049 TCTTGAGATTTATGAAGTTGCCGTA 58.597 36.000 0.00 0.00 0.00 4.02
632 646 5.245531 TCTTGAGATTTATGAAGTTGCCGT 58.754 37.500 0.00 0.00 0.00 5.68
633 647 5.801350 TCTTGAGATTTATGAAGTTGCCG 57.199 39.130 0.00 0.00 0.00 5.69
634 648 7.325660 TCATCTTGAGATTTATGAAGTTGCC 57.674 36.000 0.00 0.00 31.21 4.52
640 654 9.428097 CCGACATATCATCTTGAGATTTATGAA 57.572 33.333 18.50 0.00 34.67 2.57
641 655 8.588472 ACCGACATATCATCTTGAGATTTATGA 58.412 33.333 18.50 6.25 34.67 2.15
642 656 8.768957 ACCGACATATCATCTTGAGATTTATG 57.231 34.615 13.81 13.81 35.85 1.90
643 657 9.429359 GAACCGACATATCATCTTGAGATTTAT 57.571 33.333 0.00 0.00 31.21 1.40
644 658 8.421002 TGAACCGACATATCATCTTGAGATTTA 58.579 33.333 0.00 0.00 31.21 1.40
645 659 7.275183 TGAACCGACATATCATCTTGAGATTT 58.725 34.615 0.00 0.00 31.21 2.17
646 660 6.820335 TGAACCGACATATCATCTTGAGATT 58.180 36.000 0.00 0.00 31.21 2.40
647 661 6.041409 ACTGAACCGACATATCATCTTGAGAT 59.959 38.462 0.00 0.00 34.56 2.75
648 662 5.360999 ACTGAACCGACATATCATCTTGAGA 59.639 40.000 0.00 0.00 0.00 3.27
649 663 5.595885 ACTGAACCGACATATCATCTTGAG 58.404 41.667 0.00 0.00 0.00 3.02
650 664 5.360999 AGACTGAACCGACATATCATCTTGA 59.639 40.000 0.00 0.00 0.00 3.02
651 665 5.595885 AGACTGAACCGACATATCATCTTG 58.404 41.667 0.00 0.00 0.00 3.02
652 666 5.596361 AGAGACTGAACCGACATATCATCTT 59.404 40.000 0.00 0.00 0.00 2.40
653 667 5.136828 AGAGACTGAACCGACATATCATCT 58.863 41.667 0.00 0.00 0.00 2.90
654 668 5.446143 AGAGACTGAACCGACATATCATC 57.554 43.478 0.00 0.00 0.00 2.92
655 669 4.023622 CGAGAGACTGAACCGACATATCAT 60.024 45.833 0.00 0.00 0.00 2.45
656 670 3.312697 CGAGAGACTGAACCGACATATCA 59.687 47.826 0.00 0.00 0.00 2.15
657 671 3.304123 CCGAGAGACTGAACCGACATATC 60.304 52.174 0.00 0.00 0.00 1.63
658 672 2.619177 CCGAGAGACTGAACCGACATAT 59.381 50.000 0.00 0.00 0.00 1.78
659 673 2.014857 CCGAGAGACTGAACCGACATA 58.985 52.381 0.00 0.00 0.00 2.29
660 674 0.811915 CCGAGAGACTGAACCGACAT 59.188 55.000 0.00 0.00 0.00 3.06
661 675 0.250597 TCCGAGAGACTGAACCGACA 60.251 55.000 0.00 0.00 0.00 4.35
662 676 0.448593 CTCCGAGAGACTGAACCGAC 59.551 60.000 0.00 0.00 0.00 4.79
663 677 0.677098 CCTCCGAGAGACTGAACCGA 60.677 60.000 0.00 0.00 0.00 4.69
664 678 0.961358 ACCTCCGAGAGACTGAACCG 60.961 60.000 0.00 0.00 0.00 4.44
665 679 0.528470 CACCTCCGAGAGACTGAACC 59.472 60.000 0.00 0.00 0.00 3.62
666 680 1.249407 ACACCTCCGAGAGACTGAAC 58.751 55.000 0.00 0.00 0.00 3.18
667 681 1.887198 GAACACCTCCGAGAGACTGAA 59.113 52.381 0.00 0.00 0.00 3.02
668 682 1.202891 TGAACACCTCCGAGAGACTGA 60.203 52.381 0.00 0.00 0.00 3.41
669 683 1.248486 TGAACACCTCCGAGAGACTG 58.752 55.000 0.00 1.36 0.00 3.51
670 684 2.223803 ATGAACACCTCCGAGAGACT 57.776 50.000 0.00 0.00 0.00 3.24
671 685 2.359531 CCTATGAACACCTCCGAGAGAC 59.640 54.545 0.00 0.00 0.00 3.36
672 686 2.656002 CCTATGAACACCTCCGAGAGA 58.344 52.381 0.00 0.00 0.00 3.10
673 687 1.683917 CCCTATGAACACCTCCGAGAG 59.316 57.143 0.00 0.00 0.00 3.20
674 688 1.688311 CCCCTATGAACACCTCCGAGA 60.688 57.143 0.00 0.00 0.00 4.04
675 689 0.753262 CCCCTATGAACACCTCCGAG 59.247 60.000 0.00 0.00 0.00 4.63
676 690 1.335132 GCCCCTATGAACACCTCCGA 61.335 60.000 0.00 0.00 0.00 4.55
677 691 1.146263 GCCCCTATGAACACCTCCG 59.854 63.158 0.00 0.00 0.00 4.63
678 692 0.181350 CTGCCCCTATGAACACCTCC 59.819 60.000 0.00 0.00 0.00 4.30
679 693 0.181350 CCTGCCCCTATGAACACCTC 59.819 60.000 0.00 0.00 0.00 3.85
680 694 1.281925 CCCTGCCCCTATGAACACCT 61.282 60.000 0.00 0.00 0.00 4.00
681 695 1.227383 CCCTGCCCCTATGAACACC 59.773 63.158 0.00 0.00 0.00 4.16
682 696 0.394352 CACCCTGCCCCTATGAACAC 60.394 60.000 0.00 0.00 0.00 3.32
683 697 0.844661 ACACCCTGCCCCTATGAACA 60.845 55.000 0.00 0.00 0.00 3.18
684 698 0.394352 CACACCCTGCCCCTATGAAC 60.394 60.000 0.00 0.00 0.00 3.18
685 699 1.998530 CACACCCTGCCCCTATGAA 59.001 57.895 0.00 0.00 0.00 2.57
686 700 2.679342 GCACACCCTGCCCCTATGA 61.679 63.158 0.00 0.00 40.42 2.15
687 701 2.124151 GCACACCCTGCCCCTATG 60.124 66.667 0.00 0.00 40.42 2.23
688 702 3.797353 CGCACACCCTGCCCCTAT 61.797 66.667 0.00 0.00 43.84 2.57
699 713 3.851845 TACAGACCCGCACGCACAC 62.852 63.158 0.00 0.00 0.00 3.82
700 714 3.607661 TACAGACCCGCACGCACA 61.608 61.111 0.00 0.00 0.00 4.57
701 715 3.110178 GTACAGACCCGCACGCAC 61.110 66.667 0.00 0.00 0.00 5.34
702 716 3.299977 AGTACAGACCCGCACGCA 61.300 61.111 0.00 0.00 0.00 5.24
703 717 2.558554 ATCAGTACAGACCCGCACGC 62.559 60.000 0.00 0.00 0.00 5.34
704 718 0.802222 CATCAGTACAGACCCGCACG 60.802 60.000 0.00 0.00 0.00 5.34
705 719 0.246635 ACATCAGTACAGACCCGCAC 59.753 55.000 0.00 0.00 0.00 5.34
706 720 0.973632 AACATCAGTACAGACCCGCA 59.026 50.000 0.00 0.00 0.00 5.69
707 721 2.094762 AAACATCAGTACAGACCCGC 57.905 50.000 0.00 0.00 0.00 6.13
708 722 6.548441 TTTTTAAACATCAGTACAGACCCG 57.452 37.500 0.00 0.00 0.00 5.28
730 744 3.667360 GGCACCATGATTTGAGCTTTTT 58.333 40.909 0.00 0.00 0.00 1.94
731 745 2.353011 CGGCACCATGATTTGAGCTTTT 60.353 45.455 0.00 0.00 0.00 2.27
732 746 1.203052 CGGCACCATGATTTGAGCTTT 59.797 47.619 0.00 0.00 0.00 3.51
733 747 0.813184 CGGCACCATGATTTGAGCTT 59.187 50.000 0.00 0.00 0.00 3.74
734 748 1.033746 CCGGCACCATGATTTGAGCT 61.034 55.000 0.00 0.00 0.00 4.09
735 749 1.315257 ACCGGCACCATGATTTGAGC 61.315 55.000 0.00 0.00 0.00 4.26
736 750 1.176527 AACCGGCACCATGATTTGAG 58.823 50.000 0.00 0.00 0.00 3.02
737 751 2.364632 CTAACCGGCACCATGATTTGA 58.635 47.619 0.00 0.00 0.00 2.69
738 752 1.202290 GCTAACCGGCACCATGATTTG 60.202 52.381 0.00 0.00 0.00 2.32
739 753 1.102978 GCTAACCGGCACCATGATTT 58.897 50.000 0.00 0.00 0.00 2.17
740 754 0.751643 GGCTAACCGGCACCATGATT 60.752 55.000 0.00 0.00 38.25 2.57
741 755 1.152963 GGCTAACCGGCACCATGAT 60.153 57.895 0.00 0.00 38.25 2.45
772 786 3.716585 GCTTCCAGCAGAGCGATC 58.283 61.111 0.00 0.00 41.89 3.69
922 939 0.733150 CTGTCATCCTGCGACGACTA 59.267 55.000 0.00 0.00 36.11 2.59
930 947 1.280421 AGGGTTCTTCTGTCATCCTGC 59.720 52.381 0.00 0.00 0.00 4.85
1011 1028 7.064253 CGTATGGTATATCGTAGAGACATGTCA 59.936 40.741 27.02 6.19 43.63 3.58
1012 1029 7.400301 CGTATGGTATATCGTAGAGACATGTC 58.600 42.308 18.47 18.47 43.63 3.06
1014 1031 6.183360 TGCGTATGGTATATCGTAGAGACATG 60.183 42.308 0.00 0.00 43.63 3.21
1015 1032 5.878669 TGCGTATGGTATATCGTAGAGACAT 59.121 40.000 0.00 0.00 43.63 3.06
1017 1034 5.727239 GCTGCGTATGGTATATCGTAGAGAC 60.727 48.000 5.81 0.00 43.63 3.36
1027 1044 3.762407 ATGGTTGCTGCGTATGGTATA 57.238 42.857 0.00 0.00 0.00 1.47
1028 1045 2.638480 ATGGTTGCTGCGTATGGTAT 57.362 45.000 0.00 0.00 0.00 2.73
1057 1074 5.242434 TGCTTGTGGTACTTCGATTGTAAT 58.758 37.500 0.00 0.00 0.00 1.89
1062 1080 3.440173 CCATTGCTTGTGGTACTTCGATT 59.560 43.478 0.00 0.00 31.96 3.34
1148 1166 2.165167 CATTGATGAAGCTGGTGTGGT 58.835 47.619 0.00 0.00 0.00 4.16
1173 1191 4.170723 CGGACGAAGGTCTGCTTC 57.829 61.111 0.00 0.00 42.30 3.86
1185 1203 2.651232 GAATCGGACGAGCGGACG 60.651 66.667 0.00 0.00 39.31 4.79
1245 1266 7.128331 TGTACTTTAGTAGTAATGCGATCGAC 58.872 38.462 21.57 10.98 40.93 4.20
1264 1285 3.386768 AGTGCACGTTCTGATGTACTT 57.613 42.857 12.01 0.00 38.44 2.24
1908 1974 2.045143 AGGACTCCGGACGACCTC 60.045 66.667 15.37 0.00 0.00 3.85
2373 2445 4.760047 CCGCCGTGGAACCTCAGG 62.760 72.222 0.00 0.00 42.00 3.86
2595 2673 8.021955 TCGATCCTTATTTGATGATTTGATCG 57.978 34.615 10.76 10.76 46.13 3.69
2651 2735 1.146041 GGGTACGCATGATGGCTGA 59.854 57.895 4.83 0.00 0.00 4.26
2677 2761 2.649190 TGAAGCAAGCAAACTGTACCA 58.351 42.857 0.00 0.00 0.00 3.25
2682 2766 3.631144 TCGATTTGAAGCAAGCAAACTG 58.369 40.909 0.00 0.00 37.98 3.16
2763 2861 2.402640 GCTGCTGCTTATTCATCTGC 57.597 50.000 8.53 0.00 36.03 4.26
2891 3031 2.892852 CAAACTGATGGGGAAAGCTGAA 59.107 45.455 0.00 0.00 0.00 3.02
2895 3035 2.519013 ACTCAAACTGATGGGGAAAGC 58.481 47.619 0.00 0.00 0.00 3.51
2900 3040 4.141959 ACACAAAAACTCAAACTGATGGGG 60.142 41.667 0.00 0.00 0.00 4.96
2909 3049 7.831753 TCAATCAGGTTACACAAAAACTCAAA 58.168 30.769 0.00 0.00 0.00 2.69
2924 3064 2.453521 ACTGCATGCATCAATCAGGTT 58.546 42.857 22.97 0.00 0.00 3.50
2926 3066 2.688446 AGAACTGCATGCATCAATCAGG 59.312 45.455 22.97 9.38 0.00 3.86
2953 3093 2.390225 AGACCTCTTGGCTCGGATAT 57.610 50.000 0.00 0.00 36.63 1.63
2966 3106 4.020128 ACAGGGTTATGAACTCAAGACCTC 60.020 45.833 12.09 5.60 36.06 3.85
2982 3122 0.690762 ATGTAGGCGTTGACAGGGTT 59.309 50.000 0.00 0.00 0.00 4.11
3018 3158 7.977853 CGTCTAGACTATTTTAGCCCTTAAACA 59.022 37.037 20.34 0.00 31.11 2.83
3037 3177 0.034380 CACCCCTCCTCACGTCTAGA 60.034 60.000 0.00 0.00 0.00 2.43
3044 3184 2.586648 ATTTCAACACCCCTCCTCAC 57.413 50.000 0.00 0.00 0.00 3.51
3049 3189 5.594317 AGTGCAATATATTTCAACACCCCTC 59.406 40.000 0.00 0.00 0.00 4.30
3050 3190 5.518865 AGTGCAATATATTTCAACACCCCT 58.481 37.500 0.00 0.00 0.00 4.79
3073 3213 3.032265 TCCGAATTGATGGAGAGAGGA 57.968 47.619 0.00 0.00 0.00 3.71
3104 3244 5.593909 TGTTGAATTCATGTTCCAGTCAAGT 59.406 36.000 9.40 0.00 0.00 3.16
3109 3249 4.834496 ACCATGTTGAATTCATGTTCCAGT 59.166 37.500 9.40 0.00 40.43 4.00
3195 3336 3.818773 CCTAAACGTGGACCAAAAGTGAT 59.181 43.478 0.00 0.00 0.00 3.06
3196 3337 3.207778 CCTAAACGTGGACCAAAAGTGA 58.792 45.455 0.00 0.00 0.00 3.41
3220 3361 1.284982 CTTCACGTGTGGCTTCCTCG 61.285 60.000 16.51 0.00 0.00 4.63
3260 3401 0.251341 GCTGATGGGGAAAGGTGTGT 60.251 55.000 0.00 0.00 0.00 3.72
3262 3403 0.779997 AAGCTGATGGGGAAAGGTGT 59.220 50.000 0.00 0.00 0.00 4.16
3301 3442 1.900016 CTGCACACACCAGCCACAT 60.900 57.895 0.00 0.00 0.00 3.21
3302 3443 2.516695 CTGCACACACCAGCCACA 60.517 61.111 0.00 0.00 0.00 4.17
3303 3444 2.063541 GAACTGCACACACCAGCCAC 62.064 60.000 0.00 0.00 33.65 5.01
3304 3445 1.823470 GAACTGCACACACCAGCCA 60.823 57.895 0.00 0.00 33.65 4.75
3305 3446 0.250295 TAGAACTGCACACACCAGCC 60.250 55.000 0.00 0.00 33.65 4.85
3306 3447 0.868406 GTAGAACTGCACACACCAGC 59.132 55.000 0.00 0.00 33.65 4.85
3313 3454 1.771854 TCCCCTTTGTAGAACTGCACA 59.228 47.619 0.00 0.00 0.00 4.57
3338 3485 4.697514 ACAATCCCTCGACAGAACATATG 58.302 43.478 0.00 0.00 0.00 1.78
3365 3512 1.970640 CATCATGTATCGAGGGACCCA 59.029 52.381 14.60 0.00 0.00 4.51
3377 3524 4.080638 TGTGTGCCCAAGATACATCATGTA 60.081 41.667 0.00 0.00 37.24 2.29
3502 3651 3.215151 TGAAATACTGCGTTTCCCAACA 58.785 40.909 0.00 0.00 35.28 3.33
3503 3652 3.907894 TGAAATACTGCGTTTCCCAAC 57.092 42.857 0.00 0.00 35.28 3.77
3504 3653 4.920640 TTTGAAATACTGCGTTTCCCAA 57.079 36.364 0.00 0.00 35.28 4.12
3505 3654 4.920640 TTTTGAAATACTGCGTTTCCCA 57.079 36.364 0.00 0.00 35.28 4.37
3526 3675 6.769822 AGATCTTGCGTGATCATAGGATTTTT 59.230 34.615 17.28 0.00 43.76 1.94
3527 3676 6.294473 AGATCTTGCGTGATCATAGGATTTT 58.706 36.000 17.28 0.00 43.76 1.82
3528 3677 5.862845 AGATCTTGCGTGATCATAGGATTT 58.137 37.500 17.28 0.00 43.76 2.17
3529 3678 5.480642 AGATCTTGCGTGATCATAGGATT 57.519 39.130 17.28 0.00 43.76 3.01
3530 3679 6.606796 AGATAGATCTTGCGTGATCATAGGAT 59.393 38.462 17.28 0.35 43.76 3.24
3531 3680 5.948758 AGATAGATCTTGCGTGATCATAGGA 59.051 40.000 17.28 0.00 43.76 2.94
3532 3681 6.206395 AGATAGATCTTGCGTGATCATAGG 57.794 41.667 17.28 0.00 43.76 2.57
3533 3682 7.066887 ACCTAGATAGATCTTGCGTGATCATAG 59.933 40.741 17.28 13.12 43.76 2.23
3534 3683 6.887002 ACCTAGATAGATCTTGCGTGATCATA 59.113 38.462 17.28 9.45 43.76 2.15
3535 3684 5.714333 ACCTAGATAGATCTTGCGTGATCAT 59.286 40.000 17.28 10.49 43.76 2.45
3536 3685 5.048434 CACCTAGATAGATCTTGCGTGATCA 60.048 44.000 17.28 0.00 43.76 2.92
3537 3686 5.182190 TCACCTAGATAGATCTTGCGTGATC 59.818 44.000 0.00 9.82 42.18 2.92
3538 3687 5.073428 TCACCTAGATAGATCTTGCGTGAT 58.927 41.667 0.00 0.00 36.30 3.06
3539 3688 4.461198 TCACCTAGATAGATCTTGCGTGA 58.539 43.478 0.00 14.76 37.43 4.35
3540 3689 4.837896 TCACCTAGATAGATCTTGCGTG 57.162 45.455 0.00 6.76 38.32 5.34
3541 3690 4.321601 GCATCACCTAGATAGATCTTGCGT 60.322 45.833 0.00 0.00 38.32 5.24
3542 3691 4.172505 GCATCACCTAGATAGATCTTGCG 58.827 47.826 0.00 0.00 38.32 4.85
3543 3692 5.144692 TGCATCACCTAGATAGATCTTGC 57.855 43.478 0.00 0.69 38.32 4.01
3544 3693 6.979817 GCTATGCATCACCTAGATAGATCTTG 59.020 42.308 0.19 0.00 38.32 3.02
3545 3694 6.666980 TGCTATGCATCACCTAGATAGATCTT 59.333 38.462 0.19 0.00 34.23 2.40
3546 3695 6.193504 TGCTATGCATCACCTAGATAGATCT 58.806 40.000 0.19 0.00 35.74 2.75
3547 3696 6.462552 TGCTATGCATCACCTAGATAGATC 57.537 41.667 0.19 0.00 34.43 2.75
3548 3697 6.626844 CGTTGCTATGCATCACCTAGATAGAT 60.627 42.308 0.19 0.00 38.76 1.98
3549 3698 5.335976 CGTTGCTATGCATCACCTAGATAGA 60.336 44.000 0.19 0.00 38.76 1.98
3550 3699 4.861462 CGTTGCTATGCATCACCTAGATAG 59.139 45.833 0.19 0.00 38.76 2.08
3551 3700 4.522789 TCGTTGCTATGCATCACCTAGATA 59.477 41.667 0.19 0.00 38.76 1.98
3552 3701 3.321968 TCGTTGCTATGCATCACCTAGAT 59.678 43.478 0.19 0.00 38.76 1.98
3553 3702 2.693074 TCGTTGCTATGCATCACCTAGA 59.307 45.455 0.19 0.00 38.76 2.43
3554 3703 3.055591 CTCGTTGCTATGCATCACCTAG 58.944 50.000 0.19 0.00 38.76 3.02
3555 3704 2.693074 TCTCGTTGCTATGCATCACCTA 59.307 45.455 0.19 0.00 38.76 3.08
3556 3705 1.482182 TCTCGTTGCTATGCATCACCT 59.518 47.619 0.19 0.00 38.76 4.00
3557 3706 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
3558 3707 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
3559 3708 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
3560 3709 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
3561 3710 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
3562 3711 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
3563 3712 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
3564 3713 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
3565 3714 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
3566 3715 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
3567 3716 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
3568 3717 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
3569 3718 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
3570 3719 0.178958 ACACACTCTCCCCTCTCGTT 60.179 55.000 0.00 0.00 0.00 3.85
3571 3720 0.609681 GACACACTCTCCCCTCTCGT 60.610 60.000 0.00 0.00 0.00 4.18
3572 3721 1.316706 GGACACACTCTCCCCTCTCG 61.317 65.000 0.00 0.00 0.00 4.04
3573 3722 0.251832 TGGACACACTCTCCCCTCTC 60.252 60.000 0.00 0.00 0.00 3.20
3574 3723 0.543174 GTGGACACACTCTCCCCTCT 60.543 60.000 0.00 0.00 44.29 3.69
3575 3724 1.878656 CGTGGACACACTCTCCCCTC 61.879 65.000 3.12 0.00 45.50 4.30
3576 3725 1.908793 CGTGGACACACTCTCCCCT 60.909 63.158 3.12 0.00 45.50 4.79
3577 3726 0.896940 TACGTGGACACACTCTCCCC 60.897 60.000 0.00 0.00 45.50 4.81
3578 3727 0.243095 GTACGTGGACACACTCTCCC 59.757 60.000 0.00 0.00 45.50 4.30
3579 3728 0.243095 GGTACGTGGACACACTCTCC 59.757 60.000 0.00 0.00 45.50 3.71
3580 3729 0.243095 GGGTACGTGGACACACTCTC 59.757 60.000 0.00 0.00 45.50 3.20
3581 3730 0.178970 AGGGTACGTGGACACACTCT 60.179 55.000 0.00 0.00 45.50 3.24
3582 3731 0.243095 GAGGGTACGTGGACACACTC 59.757 60.000 2.84 2.84 45.50 3.51
3583 3732 1.521450 CGAGGGTACGTGGACACACT 61.521 60.000 0.00 0.00 45.50 3.55
3584 3733 1.080974 CGAGGGTACGTGGACACAC 60.081 63.158 0.00 0.00 44.23 3.82
3585 3734 0.250684 TACGAGGGTACGTGGACACA 60.251 55.000 0.00 0.00 46.02 3.72
3586 3735 0.449388 CTACGAGGGTACGTGGACAC 59.551 60.000 0.00 0.00 44.98 3.67
3587 3736 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
3588 3737 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
3590 3739 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.