Multiple sequence alignment - TraesCS6A01G153700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G153700 chr6A 100.000 2805 0 0 1 2805 141850509 141853313 0.000000e+00 5180.0
1 TraesCS6A01G153700 chr6D 91.822 2091 100 27 298 2337 113902099 113904169 0.000000e+00 2848.0
2 TraesCS6A01G153700 chr6B 90.084 2138 129 41 308 2407 203296860 203298952 0.000000e+00 2697.0
3 TraesCS6A01G153700 chr6B 87.500 320 27 4 1 310 203295994 203296310 9.550000e-95 357.0
4 TraesCS6A01G153700 chr6B 77.727 220 36 10 2594 2805 52569940 52570154 3.790000e-24 122.0
5 TraesCS6A01G153700 chr3A 77.597 308 48 12 2511 2805 104562335 104562036 1.730000e-37 167.0
6 TraesCS6A01G153700 chr3A 83.784 148 14 4 2667 2805 269653796 269653650 6.300000e-27 132.0
7 TraesCS6A01G153700 chr3A 75.251 299 42 18 2527 2805 60608051 60608337 2.280000e-21 113.0
8 TraesCS6A01G153700 chr3A 76.419 229 32 11 2594 2805 658499635 658499412 1.370000e-18 104.0
9 TraesCS6A01G153700 chr5B 76.423 246 48 7 2514 2751 643859691 643859448 1.050000e-24 124.0
10 TraesCS6A01G153700 chr7A 90.805 87 5 3 2667 2751 646553934 646553849 2.280000e-21 113.0
11 TraesCS6A01G153700 chrUn 73.784 370 58 25 2466 2805 431968227 431968587 2.950000e-20 110.0
12 TraesCS6A01G153700 chrUn 82.031 128 18 4 2639 2765 101053506 101053629 1.370000e-18 104.0
13 TraesCS6A01G153700 chr4D 84.821 112 11 6 1064 1174 508529713 508529607 1.060000e-19 108.0
14 TraesCS6A01G153700 chr2D 82.677 127 17 4 2668 2791 5240406 5240282 1.060000e-19 108.0
15 TraesCS6A01G153700 chr2D 72.689 238 42 14 2530 2752 440779986 440780215 1.090000e-04 58.4
16 TraesCS6A01G153700 chr2A 75.104 241 50 10 2532 2767 761517953 761517718 1.370000e-18 104.0
17 TraesCS6A01G153700 chr1A 74.038 312 51 20 2511 2803 117886454 117886154 1.780000e-17 100.0
18 TraesCS6A01G153700 chr2B 73.793 290 56 12 2529 2805 655651943 655652225 2.300000e-16 97.1
19 TraesCS6A01G153700 chr7B 72.652 362 72 22 2465 2805 221831564 221831209 8.270000e-16 95.3
20 TraesCS6A01G153700 chr7B 77.907 172 22 12 2646 2805 184292889 184292722 2.970000e-15 93.5
21 TraesCS6A01G153700 chr5D 75.728 206 35 9 2605 2805 374386193 374385998 3.850000e-14 89.8
22 TraesCS6A01G153700 chr3D 89.831 59 5 1 2515 2573 88097494 88097437 1.080000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G153700 chr6A 141850509 141853313 2804 False 5180 5180 100.000 1 2805 1 chr6A.!!$F1 2804
1 TraesCS6A01G153700 chr6D 113902099 113904169 2070 False 2848 2848 91.822 298 2337 1 chr6D.!!$F1 2039
2 TraesCS6A01G153700 chr6B 203295994 203298952 2958 False 1527 2697 88.792 1 2407 2 chr6B.!!$F2 2406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
772 1336 0.107654 CCGTCCAAACCCATCTCTCC 60.108 60.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2362 2997 0.035439 TTTTCTGGAGATGGCCCGTC 60.035 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 1.269448 GAGAGATGATGGACGAGGAGC 59.731 57.143 0.00 0.00 0.00 4.70
67 68 0.600557 GATGATGGACGAGGAGCGAT 59.399 55.000 0.00 0.00 44.57 4.58
69 70 1.006805 GATGGACGAGGAGCGATGG 60.007 63.158 0.00 0.00 44.57 3.51
72 73 2.833582 GACGAGGAGCGATGGGGA 60.834 66.667 0.00 0.00 44.57 4.81
84 85 0.109342 GATGGGGACTCGATGGCAAT 59.891 55.000 0.00 0.00 0.00 3.56
92 93 0.392863 CTCGATGGCAATGACCACCA 60.393 55.000 0.00 0.00 44.17 4.17
130 141 4.142138 ACCGACTAAGATAAGGTCAGCAAG 60.142 45.833 0.00 0.00 0.00 4.01
138 149 0.764890 AAGGTCAGCAAGCTACCACA 59.235 50.000 17.11 0.00 35.64 4.17
140 151 0.674895 GGTCAGCAAGCTACCACAGG 60.675 60.000 12.67 0.00 33.28 4.00
142 153 1.377725 CAGCAAGCTACCACAGGGG 60.378 63.158 0.00 0.00 44.81 4.79
153 164 0.322546 CCACAGGGGGTGTAAAGAGC 60.323 60.000 0.00 0.00 46.44 4.09
173 184 3.028916 CACATTTGGTGTTCCCGGA 57.971 52.632 0.73 0.00 42.75 5.14
202 213 2.730733 GCTGGATCTGCGATCCGA 59.269 61.111 23.43 15.52 41.03 4.55
221 232 2.482721 CGAAGGGCAATTGTCTACGTTT 59.517 45.455 10.38 0.00 0.00 3.60
232 243 5.971895 TTGTCTACGTTTCACAAGGTTAC 57.028 39.130 0.00 0.00 33.11 2.50
242 253 6.569780 GTTTCACAAGGTTACCAGAAAACAT 58.430 36.000 3.51 0.00 0.00 2.71
244 255 4.825085 TCACAAGGTTACCAGAAAACATCC 59.175 41.667 3.51 0.00 0.00 3.51
247 258 4.675063 AGGTTACCAGAAAACATCCCAT 57.325 40.909 3.51 0.00 0.00 4.00
248 259 5.789574 AGGTTACCAGAAAACATCCCATA 57.210 39.130 3.51 0.00 0.00 2.74
253 264 4.600062 ACCAGAAAACATCCCATAAGTCC 58.400 43.478 0.00 0.00 0.00 3.85
263 274 3.750371 TCCCATAAGTCCCATAATTGCG 58.250 45.455 0.00 0.00 0.00 4.85
288 299 4.087892 CCAGTGCTCCGACCCTGG 62.088 72.222 0.00 0.00 38.63 4.45
310 873 4.264352 GGCCCCCAGATTTATGATCCAATA 60.264 45.833 0.00 0.00 0.00 1.90
323 886 3.767131 TGATCCAATAGAACAGGACGACA 59.233 43.478 0.00 0.00 33.57 4.35
342 905 2.176364 ACAGGCTACGTCCTAATCCCTA 59.824 50.000 0.00 0.00 33.95 3.53
351 914 3.419943 GTCCTAATCCCTACGGTAGAGG 58.580 54.545 16.59 13.78 0.00 3.69
393 956 0.392336 ATCTCAGATCAAGCGGCTCC 59.608 55.000 1.45 0.00 0.00 4.70
446 1009 2.596851 CGCCAGCTAGCCCCCATAT 61.597 63.158 12.13 0.00 0.00 1.78
447 1010 1.770324 GCCAGCTAGCCCCCATATT 59.230 57.895 12.13 0.00 0.00 1.28
448 1011 0.322906 GCCAGCTAGCCCCCATATTC 60.323 60.000 12.13 0.00 0.00 1.75
449 1012 1.366319 CCAGCTAGCCCCCATATTCT 58.634 55.000 12.13 0.00 0.00 2.40
474 1037 2.372264 CAGAATAGTGCCCACTTGCAT 58.628 47.619 6.21 0.00 44.30 3.96
476 1039 1.331756 GAATAGTGCCCACTTGCATCG 59.668 52.381 6.21 0.00 44.30 3.84
532 1095 4.207891 ACGTCAGCCACAAATAAGATCT 57.792 40.909 0.00 0.00 0.00 2.75
700 1264 2.914289 CTGGTCTCCATCCCAGGC 59.086 66.667 0.00 0.00 43.74 4.85
772 1336 0.107654 CCGTCCAAACCCATCTCTCC 60.108 60.000 0.00 0.00 0.00 3.71
778 1342 2.158696 CCAAACCCATCTCTCCCATCTC 60.159 54.545 0.00 0.00 0.00 2.75
779 1343 2.507058 CAAACCCATCTCTCCCATCTCA 59.493 50.000 0.00 0.00 0.00 3.27
780 1344 1.799933 ACCCATCTCTCCCATCTCAC 58.200 55.000 0.00 0.00 0.00 3.51
827 1391 4.717629 CGACCACCGCGCAGAGAA 62.718 66.667 8.75 0.00 0.00 2.87
835 1406 1.373497 CGCGCAGAGAACAGGTCTT 60.373 57.895 8.75 0.00 36.41 3.01
841 1412 1.067495 CAGAGAACAGGTCTTCCGTCC 60.067 57.143 0.00 0.00 36.41 4.79
842 1413 1.203075 AGAGAACAGGTCTTCCGTCCT 60.203 52.381 0.00 0.00 36.41 3.85
945 1517 3.032609 CGCGAGCGATCCATCCAC 61.033 66.667 12.58 0.00 42.83 4.02
1694 2278 4.880426 GGCCCATCTCCCTCCCGA 62.880 72.222 0.00 0.00 0.00 5.14
1695 2279 2.527875 GCCCATCTCCCTCCCGAT 60.528 66.667 0.00 0.00 0.00 4.18
1725 2313 1.746991 CAAGGAAGGAAGCGAGCCC 60.747 63.158 0.00 0.00 0.00 5.19
1782 2370 8.376942 TGAAGCAAAGTTCGTTTGTTTAATTTC 58.623 29.630 0.35 0.00 46.22 2.17
1866 2487 1.758862 CATGGGGGCAAAAGATCTTCC 59.241 52.381 8.78 5.77 0.00 3.46
1870 2491 2.034878 GGGGCAAAAGATCTTCCCATC 58.965 52.381 24.84 10.62 38.72 3.51
1936 2557 1.214589 GGTTAGGAAGCGCGAGACA 59.785 57.895 12.10 0.00 0.00 3.41
1944 2565 3.112709 GCGCGAGACAAGGTCCAC 61.113 66.667 12.10 0.00 32.18 4.02
1972 2594 1.003580 TGGATGGGAGAGTTTGACTGC 59.996 52.381 0.00 0.00 0.00 4.40
1981 2603 0.748005 AGTTTGACTGCCTGTGCGTT 60.748 50.000 0.00 0.00 41.78 4.84
2063 2686 1.523938 GATACCTTCCGTGCTGGCC 60.524 63.158 0.00 0.00 37.80 5.36
2120 2743 2.734606 TGGCTGTCGACGTTAATCTTTG 59.265 45.455 11.62 0.00 0.00 2.77
2130 2753 5.333492 CGACGTTAATCTTTGCTAACCACAA 60.333 40.000 0.00 0.00 0.00 3.33
2174 2802 1.614996 GAGAGGGATCGAGCTCATGA 58.385 55.000 15.40 3.95 0.00 3.07
2222 2850 2.685380 CTGTCTTCCCCCTCGCCT 60.685 66.667 0.00 0.00 0.00 5.52
2223 2851 2.683933 TGTCTTCCCCCTCGCCTC 60.684 66.667 0.00 0.00 0.00 4.70
2224 2852 3.839432 GTCTTCCCCCTCGCCTCG 61.839 72.222 0.00 0.00 0.00 4.63
2310 2938 1.471684 GTGGACCTGGTACTCTGTACG 59.528 57.143 11.06 0.00 0.00 3.67
2320 2955 1.292223 CTCTGTACGGGTGGTGGTG 59.708 63.158 0.85 0.00 0.00 4.17
2344 2979 3.098636 GCTTGCCGTGAATATTTCGTTC 58.901 45.455 11.15 5.50 0.00 3.95
2352 2987 5.423717 CGTGAATATTTCGTTCGAGGAATG 58.576 41.667 2.37 0.00 0.00 2.67
2353 2988 5.556382 CGTGAATATTTCGTTCGAGGAATGG 60.556 44.000 2.37 0.00 0.00 3.16
2354 2989 5.522460 GTGAATATTTCGTTCGAGGAATGGA 59.478 40.000 2.37 0.00 0.00 3.41
2356 2991 6.202762 TGAATATTTCGTTCGAGGAATGGATG 59.797 38.462 2.37 0.00 0.00 3.51
2357 2992 2.309528 TTCGTTCGAGGAATGGATGG 57.690 50.000 0.00 0.00 0.00 3.51
2358 2993 1.191535 TCGTTCGAGGAATGGATGGT 58.808 50.000 0.00 0.00 0.00 3.55
2360 2995 1.137086 CGTTCGAGGAATGGATGGTCT 59.863 52.381 0.00 0.00 0.00 3.85
2361 2996 2.555199 GTTCGAGGAATGGATGGTCTG 58.445 52.381 0.00 0.00 0.00 3.51
2362 2997 1.123077 TCGAGGAATGGATGGTCTGG 58.877 55.000 0.00 0.00 0.00 3.86
2363 2998 1.123077 CGAGGAATGGATGGTCTGGA 58.877 55.000 0.00 0.00 0.00 3.86
2364 2999 1.202580 CGAGGAATGGATGGTCTGGAC 60.203 57.143 0.00 0.00 0.00 4.02
2378 3013 2.764128 GGACGGGCCATCTCCAGA 60.764 66.667 4.39 0.00 36.34 3.86
2390 3025 4.161001 GCCATCTCCAGAAAACATGGAAAT 59.839 41.667 0.00 0.00 46.04 2.17
2398 3033 6.427547 TCCAGAAAACATGGAAATTGAATTGC 59.572 34.615 0.00 0.00 43.87 3.56
2415 3050 9.630098 ATTGAATTGCAATTTACTACTCTTGTG 57.370 29.630 24.81 0.00 44.68 3.33
2416 3051 8.165239 TGAATTGCAATTTACTACTCTTGTGT 57.835 30.769 24.81 0.00 0.00 3.72
2417 3052 9.278978 TGAATTGCAATTTACTACTCTTGTGTA 57.721 29.630 24.81 0.00 0.00 2.90
2421 3056 7.526608 TGCAATTTACTACTCTTGTGTATTGC 58.473 34.615 0.00 0.00 41.01 3.56
2422 3057 7.390440 TGCAATTTACTACTCTTGTGTATTGCT 59.610 33.333 14.56 0.00 41.10 3.91
2423 3058 7.693951 GCAATTTACTACTCTTGTGTATTGCTG 59.306 37.037 0.00 0.00 39.52 4.41
2424 3059 8.721478 CAATTTACTACTCTTGTGTATTGCTGT 58.279 33.333 0.00 0.00 0.00 4.40
2425 3060 9.938280 AATTTACTACTCTTGTGTATTGCTGTA 57.062 29.630 0.00 0.00 0.00 2.74
2426 3061 8.752766 TTTACTACTCTTGTGTATTGCTGTAC 57.247 34.615 0.00 0.00 0.00 2.90
2427 3062 6.591750 ACTACTCTTGTGTATTGCTGTACT 57.408 37.500 0.00 0.00 0.00 2.73
2428 3063 6.622549 ACTACTCTTGTGTATTGCTGTACTC 58.377 40.000 0.00 0.00 0.00 2.59
2429 3064 4.822026 ACTCTTGTGTATTGCTGTACTCC 58.178 43.478 0.00 0.00 0.00 3.85
2430 3065 4.184629 CTCTTGTGTATTGCTGTACTCCC 58.815 47.826 0.00 0.00 0.00 4.30
2431 3066 3.055385 TCTTGTGTATTGCTGTACTCCCC 60.055 47.826 0.00 0.00 0.00 4.81
2432 3067 2.546899 TGTGTATTGCTGTACTCCCCT 58.453 47.619 0.00 0.00 0.00 4.79
2433 3068 2.910319 TGTGTATTGCTGTACTCCCCTT 59.090 45.455 0.00 0.00 0.00 3.95
2434 3069 4.098155 TGTGTATTGCTGTACTCCCCTTA 58.902 43.478 0.00 0.00 0.00 2.69
2435 3070 4.532916 TGTGTATTGCTGTACTCCCCTTAA 59.467 41.667 0.00 0.00 0.00 1.85
2436 3071 5.190925 TGTGTATTGCTGTACTCCCCTTAAT 59.809 40.000 0.00 0.00 0.00 1.40
2437 3072 6.120220 GTGTATTGCTGTACTCCCCTTAATT 58.880 40.000 0.00 0.00 0.00 1.40
2438 3073 6.602009 GTGTATTGCTGTACTCCCCTTAATTT 59.398 38.462 0.00 0.00 0.00 1.82
2439 3074 7.122204 GTGTATTGCTGTACTCCCCTTAATTTT 59.878 37.037 0.00 0.00 0.00 1.82
2440 3075 7.672239 TGTATTGCTGTACTCCCCTTAATTTTT 59.328 33.333 0.00 0.00 0.00 1.94
2441 3076 6.584185 TTGCTGTACTCCCCTTAATTTTTC 57.416 37.500 0.00 0.00 0.00 2.29
2442 3077 5.887754 TGCTGTACTCCCCTTAATTTTTCT 58.112 37.500 0.00 0.00 0.00 2.52
2443 3078 6.311735 TGCTGTACTCCCCTTAATTTTTCTT 58.688 36.000 0.00 0.00 0.00 2.52
2444 3079 6.433093 TGCTGTACTCCCCTTAATTTTTCTTC 59.567 38.462 0.00 0.00 0.00 2.87
2445 3080 6.433093 GCTGTACTCCCCTTAATTTTTCTTCA 59.567 38.462 0.00 0.00 0.00 3.02
2446 3081 7.362142 GCTGTACTCCCCTTAATTTTTCTTCAG 60.362 40.741 0.00 0.00 0.00 3.02
2447 3082 6.946009 TGTACTCCCCTTAATTTTTCTTCAGG 59.054 38.462 0.00 0.00 0.00 3.86
2448 3083 5.333581 ACTCCCCTTAATTTTTCTTCAGGG 58.666 41.667 0.00 0.00 38.78 4.45
2449 3084 5.075900 ACTCCCCTTAATTTTTCTTCAGGGA 59.924 40.000 3.46 0.00 40.69 4.20
2450 3085 5.971493 TCCCCTTAATTTTTCTTCAGGGAA 58.029 37.500 3.46 0.00 40.69 3.97
2451 3086 6.386284 TCCCCTTAATTTTTCTTCAGGGAAA 58.614 36.000 3.46 0.00 40.69 3.13
2452 3087 6.847036 TCCCCTTAATTTTTCTTCAGGGAAAA 59.153 34.615 3.46 0.00 40.69 2.29
2453 3088 7.515861 TCCCCTTAATTTTTCTTCAGGGAAAAT 59.484 33.333 3.46 0.00 40.69 1.82
2454 3089 7.607607 CCCCTTAATTTTTCTTCAGGGAAAATG 59.392 37.037 3.46 0.00 40.69 2.32
2455 3090 8.374743 CCCTTAATTTTTCTTCAGGGAAAATGA 58.625 33.333 0.00 0.00 40.69 2.57
2456 3091 9.777297 CCTTAATTTTTCTTCAGGGAAAATGAA 57.223 29.630 3.74 0.00 42.38 2.57
2466 3101 9.723601 TCTTCAGGGAAAATGAATTTTATTTGG 57.276 29.630 1.10 0.00 39.86 3.28
2467 3102 9.723601 CTTCAGGGAAAATGAATTTTATTTGGA 57.276 29.630 1.10 0.00 39.86 3.53
2468 3103 9.500785 TTCAGGGAAAATGAATTTTATTTGGAC 57.499 29.630 1.10 0.00 39.86 4.02
2469 3104 7.816995 TCAGGGAAAATGAATTTTATTTGGACG 59.183 33.333 1.10 0.00 39.86 4.79
2470 3105 7.602265 CAGGGAAAATGAATTTTATTTGGACGT 59.398 33.333 1.10 0.00 39.86 4.34
2471 3106 7.602265 AGGGAAAATGAATTTTATTTGGACGTG 59.398 33.333 0.00 0.00 39.86 4.49
2472 3107 7.148490 GGGAAAATGAATTTTATTTGGACGTGG 60.148 37.037 0.00 0.00 39.86 4.94
2473 3108 7.600752 GGAAAATGAATTTTATTTGGACGTGGA 59.399 33.333 0.00 0.00 39.86 4.02
2474 3109 8.532977 AAAATGAATTTTATTTGGACGTGGAG 57.467 30.769 0.00 0.00 38.14 3.86
2475 3110 6.834168 ATGAATTTTATTTGGACGTGGAGT 57.166 33.333 0.00 0.00 0.00 3.85
2476 3111 7.931578 ATGAATTTTATTTGGACGTGGAGTA 57.068 32.000 0.00 0.00 0.00 2.59
2477 3112 7.931578 TGAATTTTATTTGGACGTGGAGTAT 57.068 32.000 0.00 0.00 0.00 2.12
2478 3113 8.343168 TGAATTTTATTTGGACGTGGAGTATT 57.657 30.769 0.00 0.00 0.00 1.89
2479 3114 8.798402 TGAATTTTATTTGGACGTGGAGTATTT 58.202 29.630 0.00 0.00 0.00 1.40
2480 3115 8.980143 AATTTTATTTGGACGTGGAGTATTTG 57.020 30.769 0.00 0.00 0.00 2.32
2481 3116 5.554822 TTATTTGGACGTGGAGTATTTGC 57.445 39.130 0.00 0.00 0.00 3.68
2482 3117 2.851263 TTGGACGTGGAGTATTTGCT 57.149 45.000 0.00 0.00 0.00 3.91
2483 3118 2.380084 TGGACGTGGAGTATTTGCTC 57.620 50.000 0.00 0.00 34.89 4.26
2492 3127 3.247006 GAGTATTTGCTCCCGAGTTCA 57.753 47.619 0.00 0.00 0.00 3.18
2493 3128 3.596214 GAGTATTTGCTCCCGAGTTCAA 58.404 45.455 0.00 0.00 0.00 2.69
2494 3129 4.000988 GAGTATTTGCTCCCGAGTTCAAA 58.999 43.478 0.00 0.00 33.64 2.69
2495 3130 4.589908 AGTATTTGCTCCCGAGTTCAAAT 58.410 39.130 12.15 12.15 40.77 2.32
2496 3131 3.855689 ATTTGCTCCCGAGTTCAAATG 57.144 42.857 8.58 0.00 37.63 2.32
2497 3132 0.881118 TTGCTCCCGAGTTCAAATGC 59.119 50.000 0.00 0.00 0.00 3.56
2498 3133 0.250684 TGCTCCCGAGTTCAAATGCA 60.251 50.000 0.00 0.00 0.00 3.96
2499 3134 1.098050 GCTCCCGAGTTCAAATGCAT 58.902 50.000 0.00 0.00 0.00 3.96
2500 3135 1.064654 GCTCCCGAGTTCAAATGCATC 59.935 52.381 0.00 0.00 0.00 3.91
2501 3136 2.358957 CTCCCGAGTTCAAATGCATCA 58.641 47.619 0.00 0.00 0.00 3.07
2502 3137 2.947652 CTCCCGAGTTCAAATGCATCAT 59.052 45.455 0.00 0.00 0.00 2.45
2503 3138 4.129380 CTCCCGAGTTCAAATGCATCATA 58.871 43.478 0.00 0.00 0.00 2.15
2504 3139 3.876914 TCCCGAGTTCAAATGCATCATAC 59.123 43.478 0.00 0.00 0.00 2.39
2505 3140 3.879295 CCCGAGTTCAAATGCATCATACT 59.121 43.478 0.00 1.35 0.00 2.12
2506 3141 4.336433 CCCGAGTTCAAATGCATCATACTT 59.664 41.667 0.00 0.00 0.00 2.24
2507 3142 5.527214 CCCGAGTTCAAATGCATCATACTTA 59.473 40.000 0.00 0.00 0.00 2.24
2508 3143 6.038161 CCCGAGTTCAAATGCATCATACTTAA 59.962 38.462 0.00 0.00 0.00 1.85
2509 3144 6.907212 CCGAGTTCAAATGCATCATACTTAAC 59.093 38.462 0.00 0.00 0.00 2.01
2510 3145 7.413988 CCGAGTTCAAATGCATCATACTTAACA 60.414 37.037 0.00 0.00 0.00 2.41
2511 3146 7.637519 CGAGTTCAAATGCATCATACTTAACAG 59.362 37.037 0.00 0.00 0.00 3.16
2512 3147 8.340618 AGTTCAAATGCATCATACTTAACAGT 57.659 30.769 0.00 0.00 36.99 3.55
2513 3148 9.448438 AGTTCAAATGCATCATACTTAACAGTA 57.552 29.630 0.00 0.00 39.94 2.74
2563 3198 8.673626 ACTTTGACAAATATTTTGTATGCTCG 57.326 30.769 0.05 0.00 31.96 5.03
2564 3199 7.273381 ACTTTGACAAATATTTTGTATGCTCGC 59.727 33.333 0.05 0.00 31.96 5.03
2565 3200 6.188400 TGACAAATATTTTGTATGCTCGCA 57.812 33.333 5.66 0.00 31.96 5.10
2566 3201 6.616017 TGACAAATATTTTGTATGCTCGCAA 58.384 32.000 5.66 0.00 31.96 4.85
2567 3202 7.087007 TGACAAATATTTTGTATGCTCGCAAA 58.913 30.769 5.66 0.00 31.96 3.68
2568 3203 7.273164 TGACAAATATTTTGTATGCTCGCAAAG 59.727 33.333 5.66 0.00 36.20 2.77
2569 3204 7.090173 ACAAATATTTTGTATGCTCGCAAAGT 58.910 30.769 3.90 0.00 36.20 2.66
2570 3205 7.598493 ACAAATATTTTGTATGCTCGCAAAGTT 59.402 29.630 3.90 0.00 36.20 2.66
2571 3206 8.434661 CAAATATTTTGTATGCTCGCAAAGTTT 58.565 29.630 0.00 0.00 36.20 2.66
2572 3207 7.740519 ATATTTTGTATGCTCGCAAAGTTTC 57.259 32.000 0.00 0.00 36.20 2.78
2573 3208 4.829064 TTTGTATGCTCGCAAAGTTTCT 57.171 36.364 0.00 0.00 31.82 2.52
2574 3209 3.811722 TGTATGCTCGCAAAGTTTCTG 57.188 42.857 0.00 0.00 0.00 3.02
2575 3210 3.398406 TGTATGCTCGCAAAGTTTCTGA 58.602 40.909 0.00 0.00 0.00 3.27
2576 3211 3.812609 TGTATGCTCGCAAAGTTTCTGAA 59.187 39.130 0.00 0.00 0.00 3.02
2577 3212 4.455533 TGTATGCTCGCAAAGTTTCTGAAT 59.544 37.500 0.00 0.00 0.00 2.57
2578 3213 5.641636 TGTATGCTCGCAAAGTTTCTGAATA 59.358 36.000 0.00 0.00 0.00 1.75
2579 3214 5.627499 ATGCTCGCAAAGTTTCTGAATAA 57.373 34.783 0.00 0.00 0.00 1.40
2580 3215 5.431420 TGCTCGCAAAGTTTCTGAATAAA 57.569 34.783 0.00 0.00 0.00 1.40
2581 3216 5.826586 TGCTCGCAAAGTTTCTGAATAAAA 58.173 33.333 0.00 0.00 0.00 1.52
2582 3217 6.446318 TGCTCGCAAAGTTTCTGAATAAAAT 58.554 32.000 0.00 0.00 0.00 1.82
2583 3218 6.582295 TGCTCGCAAAGTTTCTGAATAAAATC 59.418 34.615 0.00 0.00 0.00 2.17
2584 3219 6.582295 GCTCGCAAAGTTTCTGAATAAAATCA 59.418 34.615 0.00 0.00 0.00 2.57
2585 3220 7.409767 GCTCGCAAAGTTTCTGAATAAAATCAC 60.410 37.037 0.00 0.00 0.00 3.06
2586 3221 7.421599 TCGCAAAGTTTCTGAATAAAATCACA 58.578 30.769 0.00 0.00 0.00 3.58
2587 3222 8.081633 TCGCAAAGTTTCTGAATAAAATCACAT 58.918 29.630 0.00 0.00 0.00 3.21
2588 3223 8.368126 CGCAAAGTTTCTGAATAAAATCACATC 58.632 33.333 0.00 0.00 0.00 3.06
2589 3224 8.650714 GCAAAGTTTCTGAATAAAATCACATCC 58.349 33.333 0.00 0.00 0.00 3.51
2590 3225 9.695526 CAAAGTTTCTGAATAAAATCACATCCA 57.304 29.630 0.00 0.00 0.00 3.41
2593 3228 9.918630 AGTTTCTGAATAAAATCACATCCAAAG 57.081 29.630 0.00 0.00 0.00 2.77
2594 3229 9.912634 GTTTCTGAATAAAATCACATCCAAAGA 57.087 29.630 0.00 0.00 0.00 2.52
2597 3232 8.742777 TCTGAATAAAATCACATCCAAAGAAGG 58.257 33.333 0.00 0.00 0.00 3.46
2598 3233 7.322664 TGAATAAAATCACATCCAAAGAAGGC 58.677 34.615 0.00 0.00 0.00 4.35
2599 3234 6.855763 ATAAAATCACATCCAAAGAAGGCA 57.144 33.333 0.00 0.00 0.00 4.75
2600 3235 5.750352 AAAATCACATCCAAAGAAGGCAT 57.250 34.783 0.00 0.00 0.00 4.40
2601 3236 4.730949 AATCACATCCAAAGAAGGCATG 57.269 40.909 0.00 0.00 0.00 4.06
2602 3237 2.449464 TCACATCCAAAGAAGGCATGG 58.551 47.619 0.00 0.00 35.49 3.66
2603 3238 1.134907 CACATCCAAAGAAGGCATGGC 60.135 52.381 12.14 12.14 34.13 4.40
2604 3239 1.187974 CATCCAAAGAAGGCATGGCA 58.812 50.000 22.64 0.00 34.13 4.92
2605 3240 1.551430 CATCCAAAGAAGGCATGGCAA 59.449 47.619 22.64 0.00 34.13 4.52
2606 3241 1.714541 TCCAAAGAAGGCATGGCAAA 58.285 45.000 22.64 0.00 34.13 3.68
2607 3242 2.045524 TCCAAAGAAGGCATGGCAAAA 58.954 42.857 22.64 0.00 34.13 2.44
2608 3243 2.437281 TCCAAAGAAGGCATGGCAAAAA 59.563 40.909 22.64 0.00 34.13 1.94
2634 3269 9.783081 AAAATTTGATGCTCCAAAAAGAATAGT 57.217 25.926 7.86 0.00 39.20 2.12
2635 3270 9.783081 AAATTTGATGCTCCAAAAAGAATAGTT 57.217 25.926 7.86 0.00 39.20 2.24
2636 3271 9.783081 AATTTGATGCTCCAAAAAGAATAGTTT 57.217 25.926 7.86 0.00 39.20 2.66
2637 3272 9.783081 ATTTGATGCTCCAAAAAGAATAGTTTT 57.217 25.926 7.86 0.00 39.20 2.43
2687 3322 2.301577 TTTTTGCCACAACTTTCGGG 57.698 45.000 0.00 0.00 0.00 5.14
2688 3323 1.475403 TTTTGCCACAACTTTCGGGA 58.525 45.000 0.00 0.00 0.00 5.14
2689 3324 1.475403 TTTGCCACAACTTTCGGGAA 58.525 45.000 0.00 0.00 0.00 3.97
2690 3325 1.698506 TTGCCACAACTTTCGGGAAT 58.301 45.000 0.00 0.00 0.00 3.01
2691 3326 0.958091 TGCCACAACTTTCGGGAATG 59.042 50.000 0.00 0.00 0.00 2.67
2692 3327 0.958822 GCCACAACTTTCGGGAATGT 59.041 50.000 0.00 0.00 0.00 2.71
2693 3328 1.068541 GCCACAACTTTCGGGAATGTC 60.069 52.381 1.10 0.00 0.00 3.06
2694 3329 2.226330 CCACAACTTTCGGGAATGTCA 58.774 47.619 1.10 0.00 0.00 3.58
2695 3330 2.819608 CCACAACTTTCGGGAATGTCAT 59.180 45.455 1.10 0.00 0.00 3.06
2696 3331 3.255642 CCACAACTTTCGGGAATGTCATT 59.744 43.478 0.00 0.00 0.00 2.57
2697 3332 4.261994 CCACAACTTTCGGGAATGTCATTT 60.262 41.667 0.00 0.00 0.00 2.32
2698 3333 5.288804 CACAACTTTCGGGAATGTCATTTT 58.711 37.500 0.00 0.00 0.00 1.82
2699 3334 5.175491 CACAACTTTCGGGAATGTCATTTTG 59.825 40.000 0.00 0.74 0.00 2.44
2700 3335 5.163457 ACAACTTTCGGGAATGTCATTTTGT 60.163 36.000 0.00 1.35 0.00 2.83
2701 3336 4.870363 ACTTTCGGGAATGTCATTTTGTG 58.130 39.130 0.00 0.00 0.00 3.33
2702 3337 3.296322 TTCGGGAATGTCATTTTGTGC 57.704 42.857 0.00 0.00 0.00 4.57
2703 3338 2.513753 TCGGGAATGTCATTTTGTGCT 58.486 42.857 0.00 0.00 0.00 4.40
2704 3339 3.680490 TCGGGAATGTCATTTTGTGCTA 58.320 40.909 0.00 0.00 0.00 3.49
2705 3340 4.075682 TCGGGAATGTCATTTTGTGCTAA 58.924 39.130 0.00 0.00 0.00 3.09
2706 3341 4.520874 TCGGGAATGTCATTTTGTGCTAAA 59.479 37.500 0.00 0.00 0.00 1.85
2707 3342 5.010112 TCGGGAATGTCATTTTGTGCTAAAA 59.990 36.000 0.00 2.70 0.00 1.52
2708 3343 5.868801 CGGGAATGTCATTTTGTGCTAAAAT 59.131 36.000 0.00 6.47 0.00 1.82
2709 3344 6.368516 CGGGAATGTCATTTTGTGCTAAAATT 59.631 34.615 0.00 0.00 0.00 1.82
2710 3345 7.095271 CGGGAATGTCATTTTGTGCTAAAATTT 60.095 33.333 0.00 0.00 0.00 1.82
2711 3346 8.016801 GGGAATGTCATTTTGTGCTAAAATTTG 58.983 33.333 0.00 3.13 0.00 2.32
2712 3347 8.558700 GGAATGTCATTTTGTGCTAAAATTTGT 58.441 29.630 0.00 0.00 0.00 2.83
2713 3348 9.584839 GAATGTCATTTTGTGCTAAAATTTGTC 57.415 29.630 0.00 2.19 0.00 3.18
2714 3349 8.659925 ATGTCATTTTGTGCTAAAATTTGTCA 57.340 26.923 8.79 6.29 0.00 3.58
2715 3350 8.484641 TGTCATTTTGTGCTAAAATTTGTCAA 57.515 26.923 8.79 0.00 0.00 3.18
2716 3351 8.602328 TGTCATTTTGTGCTAAAATTTGTCAAG 58.398 29.630 8.79 0.00 0.00 3.02
2717 3352 7.583762 GTCATTTTGTGCTAAAATTTGTCAAGC 59.416 33.333 8.79 0.00 0.00 4.01
2718 3353 6.974932 TTTTGTGCTAAAATTTGTCAAGCA 57.025 29.167 11.55 11.55 40.68 3.91
2719 3354 7.551035 TTTTGTGCTAAAATTTGTCAAGCAT 57.449 28.000 16.17 0.00 44.30 3.79
2720 3355 8.654230 TTTTGTGCTAAAATTTGTCAAGCATA 57.346 26.923 16.17 12.63 44.30 3.14
2721 3356 7.636259 TTGTGCTAAAATTTGTCAAGCATAC 57.364 32.000 16.17 8.70 44.30 2.39
2722 3357 6.743110 TGTGCTAAAATTTGTCAAGCATACA 58.257 32.000 16.17 10.44 44.30 2.29
2723 3358 7.205992 TGTGCTAAAATTTGTCAAGCATACAA 58.794 30.769 16.17 0.00 44.30 2.41
2725 3360 8.547069 GTGCTAAAATTTGTCAAGCATACAAAA 58.453 29.630 16.17 0.00 46.59 2.44
2726 3361 8.547069 TGCTAAAATTTGTCAAGCATACAAAAC 58.453 29.630 13.10 3.46 46.59 2.43
2727 3362 8.547069 GCTAAAATTTGTCAAGCATACAAAACA 58.453 29.630 13.10 0.00 46.59 2.83
2731 3366 9.719279 AAATTTGTCAAGCATACAAAACATTTG 57.281 25.926 13.10 1.47 46.59 2.32
2732 3367 7.840342 TTTGTCAAGCATACAAAACATTTGT 57.160 28.000 12.53 12.53 42.28 2.83
2733 3368 7.462109 TTGTCAAGCATACAAAACATTTGTC 57.538 32.000 11.40 0.00 34.04 3.18
2734 3369 6.567959 TGTCAAGCATACAAAACATTTGTCA 58.432 32.000 11.40 0.00 34.11 3.58
2735 3370 7.038048 TGTCAAGCATACAAAACATTTGTCAA 58.962 30.769 11.40 0.00 34.11 3.18
2736 3371 7.547019 TGTCAAGCATACAAAACATTTGTCAAA 59.453 29.630 11.40 0.00 34.11 2.69
2737 3372 8.386606 GTCAAGCATACAAAACATTTGTCAAAA 58.613 29.630 11.40 0.00 34.11 2.44
2738 3373 9.107177 TCAAGCATACAAAACATTTGTCAAAAT 57.893 25.926 11.40 0.00 36.39 1.82
2739 3374 9.719279 CAAGCATACAAAACATTTGTCAAAATT 57.281 25.926 11.40 0.00 33.59 1.82
2795 3430 9.883142 TTTTTCAATTTTACTGTTCATCAAGGT 57.117 25.926 0.00 0.00 0.00 3.50
2796 3431 8.870160 TTTCAATTTTACTGTTCATCAAGGTG 57.130 30.769 0.00 0.00 0.00 4.00
2797 3432 6.446318 TCAATTTTACTGTTCATCAAGGTGC 58.554 36.000 0.00 0.00 0.00 5.01
2798 3433 6.040278 TCAATTTTACTGTTCATCAAGGTGCA 59.960 34.615 0.00 0.00 0.00 4.57
2799 3434 6.594788 ATTTTACTGTTCATCAAGGTGCAT 57.405 33.333 0.00 0.00 0.00 3.96
2800 3435 6.403866 TTTTACTGTTCATCAAGGTGCATT 57.596 33.333 0.00 0.00 0.00 3.56
2801 3436 6.403866 TTTACTGTTCATCAAGGTGCATTT 57.596 33.333 0.00 0.00 0.00 2.32
2802 3437 4.247267 ACTGTTCATCAAGGTGCATTTG 57.753 40.909 7.40 7.40 0.00 2.32
2803 3438 3.890756 ACTGTTCATCAAGGTGCATTTGA 59.109 39.130 15.99 15.99 38.76 2.69
2804 3439 4.022589 ACTGTTCATCAAGGTGCATTTGAG 60.023 41.667 17.83 11.88 37.91 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.933573 TCTTCCTCCTAGCTCCTTACG 58.066 52.381 0.00 0.00 0.00 3.18
64 65 2.029666 GCCATCGAGTCCCCATCG 59.970 66.667 0.00 0.00 41.50 3.84
67 68 1.224315 CATTGCCATCGAGTCCCCA 59.776 57.895 0.00 0.00 0.00 4.96
69 70 0.815615 GGTCATTGCCATCGAGTCCC 60.816 60.000 0.00 0.00 0.00 4.46
72 73 0.392998 GGTGGTCATTGCCATCGAGT 60.393 55.000 0.00 0.00 41.08 4.18
84 85 3.517296 TCATTTTAGCCTTGGTGGTCA 57.483 42.857 0.00 0.00 38.35 4.02
92 93 7.562135 TCTTAGTCGGTTATCATTTTAGCCTT 58.438 34.615 0.00 0.00 0.00 4.35
138 149 0.400594 GTGTGCTCTTTACACCCCCT 59.599 55.000 0.00 0.00 41.90 4.79
140 151 2.200373 ATGTGTGCTCTTTACACCCC 57.800 50.000 5.89 0.00 45.95 4.95
142 153 3.317993 ACCAAATGTGTGCTCTTTACACC 59.682 43.478 5.89 0.00 45.95 4.16
202 213 3.252458 GTGAAACGTAGACAATTGCCCTT 59.748 43.478 5.05 0.00 0.00 3.95
206 217 4.219033 CCTTGTGAAACGTAGACAATTGC 58.781 43.478 5.05 0.00 42.39 3.56
210 221 4.810491 GGTAACCTTGTGAAACGTAGACAA 59.190 41.667 0.00 0.00 42.39 3.18
221 232 4.825085 GGATGTTTTCTGGTAACCTTGTGA 59.175 41.667 0.00 0.00 0.00 3.58
232 243 3.954258 GGGACTTATGGGATGTTTTCTGG 59.046 47.826 0.00 0.00 0.00 3.86
242 253 3.750371 CGCAATTATGGGACTTATGGGA 58.250 45.455 0.00 0.00 41.79 4.37
244 255 2.095768 CGCGCAATTATGGGACTTATGG 60.096 50.000 8.75 0.00 41.79 2.74
247 258 2.319136 ACGCGCAATTATGGGACTTA 57.681 45.000 5.73 0.00 41.79 2.24
248 259 2.319136 TACGCGCAATTATGGGACTT 57.681 45.000 5.73 0.00 41.79 3.01
253 264 1.870402 TGGACATACGCGCAATTATGG 59.130 47.619 19.32 0.87 31.06 2.74
263 274 1.878522 CGGAGCACTGGACATACGC 60.879 63.158 0.00 0.00 0.00 4.42
288 299 2.978156 TGGATCATAAATCTGGGGGC 57.022 50.000 0.00 0.00 0.00 5.80
291 302 7.392673 CCTGTTCTATTGGATCATAAATCTGGG 59.607 40.741 0.00 0.00 0.00 4.45
294 305 7.875041 CGTCCTGTTCTATTGGATCATAAATCT 59.125 37.037 0.00 0.00 32.03 2.40
310 873 0.889306 GTAGCCTGTCGTCCTGTTCT 59.111 55.000 0.00 0.00 0.00 3.01
323 886 2.813354 CGTAGGGATTAGGACGTAGCCT 60.813 54.545 0.96 0.96 42.15 4.58
342 905 3.385111 GGATTTGATCAGTCCTCTACCGT 59.615 47.826 17.52 0.00 0.00 4.83
351 914 3.432890 GGAGGGTCAGGATTTGATCAGTC 60.433 52.174 0.00 0.00 38.77 3.51
393 956 2.176369 CGCCATAAATGCAACTCAACG 58.824 47.619 0.00 0.00 0.00 4.10
428 991 2.129555 AATATGGGGGCTAGCTGGCG 62.130 60.000 16.50 0.00 42.84 5.69
446 1009 3.451178 GTGGGCACTATTCTGGTAGAGAA 59.549 47.826 0.00 0.00 45.03 2.87
447 1010 3.031736 GTGGGCACTATTCTGGTAGAGA 58.968 50.000 0.00 0.00 0.00 3.10
448 1011 3.034635 AGTGGGCACTATTCTGGTAGAG 58.965 50.000 0.00 0.00 40.43 2.43
449 1012 3.116096 AGTGGGCACTATTCTGGTAGA 57.884 47.619 0.00 0.00 40.43 2.59
474 1037 0.834612 ACCCAGATATTTTCCGCCGA 59.165 50.000 0.00 0.00 0.00 5.54
476 1039 2.052782 ACACCCAGATATTTTCCGCC 57.947 50.000 0.00 0.00 0.00 6.13
479 1042 5.163794 CGTGTTGTACACCCAGATATTTTCC 60.164 44.000 0.00 0.00 45.93 3.13
480 1043 5.163794 CCGTGTTGTACACCCAGATATTTTC 60.164 44.000 0.00 0.00 45.93 2.29
507 1070 1.816074 TATTTGTGGCTGACGTTCCC 58.184 50.000 0.00 0.00 0.00 3.97
532 1095 3.261677 GGGTGTTGGGTGGGGCTA 61.262 66.667 0.00 0.00 0.00 3.93
656 1220 2.563013 TAGCGGGGAAGCGTAGTCCT 62.563 60.000 1.96 0.00 43.00 3.85
708 1272 4.065789 CGGGTGGAGGATATTTAAAGAGC 58.934 47.826 0.00 0.00 0.00 4.09
772 1336 1.118838 GAGGAGGTGAGGTGAGATGG 58.881 60.000 0.00 0.00 0.00 3.51
778 1342 2.689034 GGGGGAGGAGGTGAGGTG 60.689 72.222 0.00 0.00 0.00 4.00
779 1343 3.208592 TGGGGGAGGAGGTGAGGT 61.209 66.667 0.00 0.00 0.00 3.85
780 1344 2.689034 GTGGGGGAGGAGGTGAGG 60.689 72.222 0.00 0.00 0.00 3.86
815 1379 3.575351 GACCTGTTCTCTGCGCGGT 62.575 63.158 17.37 7.68 0.00 5.68
817 1381 1.347817 GAAGACCTGTTCTCTGCGCG 61.348 60.000 0.00 0.00 31.02 6.86
835 1406 3.013327 TCGGAGAGGGAGGACGGA 61.013 66.667 0.00 0.00 0.00 4.69
841 1412 3.578272 CGCGAGTCGGAGAGGGAG 61.578 72.222 15.52 0.00 36.95 4.30
867 1438 3.009115 CCGGGAAGGAGGAAGCCA 61.009 66.667 0.00 0.00 45.00 4.75
973 1545 5.277345 CGAACAACAATTTTCTCTTCTCGGT 60.277 40.000 0.00 0.00 0.00 4.69
974 1546 5.140177 CGAACAACAATTTTCTCTTCTCGG 58.860 41.667 0.00 0.00 0.00 4.63
1224 1807 3.073735 ACGCAGGAGGAGCTGGAG 61.074 66.667 0.00 0.00 0.00 3.86
1694 2278 0.320374 TTCCTTGTTCGGCTCGTCAT 59.680 50.000 0.00 0.00 0.00 3.06
1695 2279 0.319555 CTTCCTTGTTCGGCTCGTCA 60.320 55.000 0.00 0.00 0.00 4.35
1725 2313 9.874215 TTACATTCTACGTGTAATTCTATCTCG 57.126 33.333 0.00 0.00 37.19 4.04
1782 2370 0.472471 TGCTTAGAATAAGGCGGGGG 59.528 55.000 0.00 0.00 0.00 5.40
1851 2472 3.023939 AGATGGGAAGATCTTTTGCCC 57.976 47.619 19.46 19.46 37.72 5.36
1902 2523 4.522789 TCCTAACCACAAGATCTTTTTGCC 59.477 41.667 4.86 0.00 0.00 4.52
1936 2557 1.131303 TCCATTCGGGTGTGGACCTT 61.131 55.000 0.00 0.00 42.66 3.50
1944 2565 0.107456 CTCTCCCATCCATTCGGGTG 59.893 60.000 0.00 0.00 43.84 4.61
1962 2583 0.748005 AACGCACAGGCAGTCAAACT 60.748 50.000 0.00 0.00 41.24 2.66
1972 2594 7.715265 ACTCTATTTAATCATAACGCACAGG 57.285 36.000 0.00 0.00 0.00 4.00
2044 2667 1.220749 GCCAGCACGGAAGGTATCA 59.779 57.895 0.00 0.00 36.56 2.15
2120 2743 1.226295 GCGGCGATTTGTGGTTAGC 60.226 57.895 12.98 0.00 0.00 3.09
2174 2802 2.893398 GACGAGGTCAGCCGGAAT 59.107 61.111 5.05 0.00 40.50 3.01
2310 2938 2.282462 CAAGCTCCACCACCACCC 60.282 66.667 0.00 0.00 0.00 4.61
2320 2955 2.286418 CGAAATATTCACGGCAAGCTCC 60.286 50.000 0.00 0.00 0.00 4.70
2344 2979 1.123077 TCCAGACCATCCATTCCTCG 58.877 55.000 0.00 0.00 0.00 4.63
2352 2987 4.176752 GGCCCGTCCAGACCATCC 62.177 72.222 0.00 0.00 34.01 3.51
2353 2988 3.399181 TGGCCCGTCCAGACCATC 61.399 66.667 0.00 0.00 40.72 3.51
2361 2996 1.910580 TTTCTGGAGATGGCCCGTCC 61.911 60.000 0.00 3.95 0.00 4.79
2362 2997 0.035439 TTTTCTGGAGATGGCCCGTC 60.035 55.000 0.00 0.00 0.00 4.79
2363 2998 0.322546 GTTTTCTGGAGATGGCCCGT 60.323 55.000 0.00 0.00 0.00 5.28
2364 2999 0.322456 TGTTTTCTGGAGATGGCCCG 60.322 55.000 0.00 0.00 0.00 6.13
2375 3010 7.192148 TGCAATTCAATTTCCATGTTTTCTG 57.808 32.000 0.00 0.00 0.00 3.02
2390 3025 8.629158 ACACAAGAGTAGTAAATTGCAATTCAA 58.371 29.630 24.28 13.27 39.32 2.69
2398 3033 8.721478 ACAGCAATACACAAGAGTAGTAAATTG 58.279 33.333 0.00 0.00 0.00 2.32
2407 3042 4.322801 GGGAGTACAGCAATACACAAGAGT 60.323 45.833 0.00 0.00 0.00 3.24
2408 3043 4.184629 GGGAGTACAGCAATACACAAGAG 58.815 47.826 0.00 0.00 0.00 2.85
2409 3044 3.055385 GGGGAGTACAGCAATACACAAGA 60.055 47.826 0.00 0.00 0.00 3.02
2410 3045 3.055094 AGGGGAGTACAGCAATACACAAG 60.055 47.826 0.00 0.00 0.00 3.16
2411 3046 2.910319 AGGGGAGTACAGCAATACACAA 59.090 45.455 0.00 0.00 0.00 3.33
2412 3047 2.546899 AGGGGAGTACAGCAATACACA 58.453 47.619 0.00 0.00 0.00 3.72
2413 3048 3.629142 AAGGGGAGTACAGCAATACAC 57.371 47.619 0.00 0.00 0.00 2.90
2414 3049 5.968676 ATTAAGGGGAGTACAGCAATACA 57.031 39.130 0.00 0.00 0.00 2.29
2415 3050 7.640597 AAAATTAAGGGGAGTACAGCAATAC 57.359 36.000 0.00 0.00 0.00 1.89
2416 3051 8.113462 AGAAAAATTAAGGGGAGTACAGCAATA 58.887 33.333 0.00 0.00 0.00 1.90
2417 3052 6.954102 AGAAAAATTAAGGGGAGTACAGCAAT 59.046 34.615 0.00 0.00 0.00 3.56
2418 3053 6.311735 AGAAAAATTAAGGGGAGTACAGCAA 58.688 36.000 0.00 0.00 0.00 3.91
2419 3054 5.887754 AGAAAAATTAAGGGGAGTACAGCA 58.112 37.500 0.00 0.00 0.00 4.41
2420 3055 6.433093 TGAAGAAAAATTAAGGGGAGTACAGC 59.567 38.462 0.00 0.00 0.00 4.40
2421 3056 7.121315 CCTGAAGAAAAATTAAGGGGAGTACAG 59.879 40.741 0.00 0.00 28.04 2.74
2422 3057 6.946009 CCTGAAGAAAAATTAAGGGGAGTACA 59.054 38.462 0.00 0.00 28.04 2.90
2423 3058 6.377429 CCCTGAAGAAAAATTAAGGGGAGTAC 59.623 42.308 1.31 0.00 44.73 2.73
2424 3059 6.490492 CCCTGAAGAAAAATTAAGGGGAGTA 58.510 40.000 1.31 0.00 44.73 2.59
2425 3060 5.333581 CCCTGAAGAAAAATTAAGGGGAGT 58.666 41.667 1.31 0.00 44.73 3.85
2426 3061 5.921962 CCCTGAAGAAAAATTAAGGGGAG 57.078 43.478 1.31 0.00 44.73 4.30
2430 3065 9.777297 TTCATTTTCCCTGAAGAAAAATTAAGG 57.223 29.630 3.79 0.00 45.94 2.69
2440 3075 9.723601 CCAAATAAAATTCATTTTCCCTGAAGA 57.276 29.630 0.69 0.00 40.24 2.87
2441 3076 9.723601 TCCAAATAAAATTCATTTTCCCTGAAG 57.276 29.630 0.69 0.00 40.24 3.02
2442 3077 9.500785 GTCCAAATAAAATTCATTTTCCCTGAA 57.499 29.630 0.69 0.00 40.24 3.02
2443 3078 7.816995 CGTCCAAATAAAATTCATTTTCCCTGA 59.183 33.333 0.69 0.00 40.24 3.86
2444 3079 7.602265 ACGTCCAAATAAAATTCATTTTCCCTG 59.398 33.333 0.69 0.00 40.24 4.45
2445 3080 7.602265 CACGTCCAAATAAAATTCATTTTCCCT 59.398 33.333 0.69 0.00 40.24 4.20
2446 3081 7.148490 CCACGTCCAAATAAAATTCATTTTCCC 60.148 37.037 0.69 0.00 40.24 3.97
2447 3082 7.600752 TCCACGTCCAAATAAAATTCATTTTCC 59.399 33.333 0.69 0.00 40.24 3.13
2448 3083 8.527567 TCCACGTCCAAATAAAATTCATTTTC 57.472 30.769 0.69 0.00 40.24 2.29
2449 3084 8.147704 ACTCCACGTCCAAATAAAATTCATTTT 58.852 29.630 3.13 3.13 42.21 1.82
2450 3085 7.666623 ACTCCACGTCCAAATAAAATTCATTT 58.333 30.769 0.00 0.00 34.92 2.32
2451 3086 7.227049 ACTCCACGTCCAAATAAAATTCATT 57.773 32.000 0.00 0.00 0.00 2.57
2452 3087 6.834168 ACTCCACGTCCAAATAAAATTCAT 57.166 33.333 0.00 0.00 0.00 2.57
2453 3088 7.931578 ATACTCCACGTCCAAATAAAATTCA 57.068 32.000 0.00 0.00 0.00 2.57
2454 3089 9.072294 CAAATACTCCACGTCCAAATAAAATTC 57.928 33.333 0.00 0.00 0.00 2.17
2455 3090 7.544217 GCAAATACTCCACGTCCAAATAAAATT 59.456 33.333 0.00 0.00 0.00 1.82
2456 3091 7.033185 GCAAATACTCCACGTCCAAATAAAAT 58.967 34.615 0.00 0.00 0.00 1.82
2457 3092 6.207810 AGCAAATACTCCACGTCCAAATAAAA 59.792 34.615 0.00 0.00 0.00 1.52
2458 3093 5.708230 AGCAAATACTCCACGTCCAAATAAA 59.292 36.000 0.00 0.00 0.00 1.40
2459 3094 5.250200 AGCAAATACTCCACGTCCAAATAA 58.750 37.500 0.00 0.00 0.00 1.40
2460 3095 4.839121 AGCAAATACTCCACGTCCAAATA 58.161 39.130 0.00 0.00 0.00 1.40
2461 3096 3.686016 AGCAAATACTCCACGTCCAAAT 58.314 40.909 0.00 0.00 0.00 2.32
2462 3097 3.071479 GAGCAAATACTCCACGTCCAAA 58.929 45.455 0.00 0.00 0.00 3.28
2463 3098 2.695359 GAGCAAATACTCCACGTCCAA 58.305 47.619 0.00 0.00 0.00 3.53
2464 3099 2.380084 GAGCAAATACTCCACGTCCA 57.620 50.000 0.00 0.00 0.00 4.02
2472 3107 3.247006 TGAACTCGGGAGCAAATACTC 57.753 47.619 0.00 0.00 35.86 2.59
2473 3108 3.695830 TTGAACTCGGGAGCAAATACT 57.304 42.857 0.00 0.00 0.00 2.12
2474 3109 4.662145 CATTTGAACTCGGGAGCAAATAC 58.338 43.478 15.86 0.00 38.49 1.89
2475 3110 3.128589 GCATTTGAACTCGGGAGCAAATA 59.871 43.478 15.86 0.00 38.49 1.40
2476 3111 2.094545 GCATTTGAACTCGGGAGCAAAT 60.095 45.455 12.20 12.20 40.46 2.32
2477 3112 1.269448 GCATTTGAACTCGGGAGCAAA 59.731 47.619 9.12 9.12 35.07 3.68
2478 3113 0.881118 GCATTTGAACTCGGGAGCAA 59.119 50.000 0.00 0.00 0.00 3.91
2479 3114 0.250684 TGCATTTGAACTCGGGAGCA 60.251 50.000 0.00 0.00 0.00 4.26
2480 3115 1.064654 GATGCATTTGAACTCGGGAGC 59.935 52.381 0.00 0.00 0.00 4.70
2481 3116 2.358957 TGATGCATTTGAACTCGGGAG 58.641 47.619 0.00 0.00 0.00 4.30
2482 3117 2.488204 TGATGCATTTGAACTCGGGA 57.512 45.000 0.00 0.00 0.00 5.14
2483 3118 3.879295 AGTATGATGCATTTGAACTCGGG 59.121 43.478 0.00 0.00 0.00 5.14
2484 3119 5.490139 AAGTATGATGCATTTGAACTCGG 57.510 39.130 0.00 0.00 0.00 4.63
2485 3120 7.463544 TGTTAAGTATGATGCATTTGAACTCG 58.536 34.615 0.00 0.00 0.00 4.18
2486 3121 8.454106 ACTGTTAAGTATGATGCATTTGAACTC 58.546 33.333 0.00 0.00 33.79 3.01
2487 3122 8.340618 ACTGTTAAGTATGATGCATTTGAACT 57.659 30.769 0.00 0.00 33.79 3.01
2537 3172 9.128107 CGAGCATACAAAATATTTGTCAAAGTT 57.872 29.630 11.40 0.00 34.11 2.66
2538 3173 7.273381 GCGAGCATACAAAATATTTGTCAAAGT 59.727 33.333 11.40 0.00 34.11 2.66
2539 3174 7.273164 TGCGAGCATACAAAATATTTGTCAAAG 59.727 33.333 11.40 3.11 34.11 2.77
2540 3175 7.087007 TGCGAGCATACAAAATATTTGTCAAA 58.913 30.769 11.40 0.00 34.11 2.69
2541 3176 6.616017 TGCGAGCATACAAAATATTTGTCAA 58.384 32.000 11.40 0.00 34.11 3.18
2542 3177 6.188400 TGCGAGCATACAAAATATTTGTCA 57.812 33.333 11.40 0.51 34.11 3.58
2543 3178 7.273381 ACTTTGCGAGCATACAAAATATTTGTC 59.727 33.333 11.40 0.00 35.49 3.18
2544 3179 7.090173 ACTTTGCGAGCATACAAAATATTTGT 58.910 30.769 12.53 12.53 35.49 2.83
2545 3180 7.510428 ACTTTGCGAGCATACAAAATATTTG 57.490 32.000 0.39 1.47 35.49 2.32
2546 3181 8.532977 AAACTTTGCGAGCATACAAAATATTT 57.467 26.923 0.00 0.00 35.49 1.40
2547 3182 8.028938 AGAAACTTTGCGAGCATACAAAATATT 58.971 29.630 0.00 0.00 35.49 1.28
2548 3183 7.485913 CAGAAACTTTGCGAGCATACAAAATAT 59.514 33.333 0.00 0.00 35.49 1.28
2549 3184 6.801377 CAGAAACTTTGCGAGCATACAAAATA 59.199 34.615 0.00 0.00 35.49 1.40
2550 3185 5.630680 CAGAAACTTTGCGAGCATACAAAAT 59.369 36.000 0.00 0.00 35.49 1.82
2551 3186 4.975502 CAGAAACTTTGCGAGCATACAAAA 59.024 37.500 0.00 0.00 35.49 2.44
2552 3187 4.274705 TCAGAAACTTTGCGAGCATACAAA 59.725 37.500 0.00 0.00 34.73 2.83
2553 3188 3.812609 TCAGAAACTTTGCGAGCATACAA 59.187 39.130 0.00 0.00 0.00 2.41
2554 3189 3.398406 TCAGAAACTTTGCGAGCATACA 58.602 40.909 0.00 0.00 0.00 2.29
2555 3190 4.404507 TTCAGAAACTTTGCGAGCATAC 57.595 40.909 0.00 0.00 0.00 2.39
2556 3191 6.735678 TTATTCAGAAACTTTGCGAGCATA 57.264 33.333 0.00 0.00 0.00 3.14
2557 3192 5.627499 TTATTCAGAAACTTTGCGAGCAT 57.373 34.783 0.00 0.00 0.00 3.79
2558 3193 5.431420 TTTATTCAGAAACTTTGCGAGCA 57.569 34.783 0.00 0.00 0.00 4.26
2559 3194 6.582295 TGATTTTATTCAGAAACTTTGCGAGC 59.418 34.615 0.00 0.00 0.00 5.03
2560 3195 7.591057 TGTGATTTTATTCAGAAACTTTGCGAG 59.409 33.333 0.00 0.00 0.00 5.03
2561 3196 7.421599 TGTGATTTTATTCAGAAACTTTGCGA 58.578 30.769 0.00 0.00 0.00 5.10
2562 3197 7.621832 TGTGATTTTATTCAGAAACTTTGCG 57.378 32.000 0.00 0.00 0.00 4.85
2563 3198 8.650714 GGATGTGATTTTATTCAGAAACTTTGC 58.349 33.333 0.00 0.00 0.00 3.68
2564 3199 9.695526 TGGATGTGATTTTATTCAGAAACTTTG 57.304 29.630 0.00 0.00 0.00 2.77
2567 3202 9.918630 CTTTGGATGTGATTTTATTCAGAAACT 57.081 29.630 0.00 0.00 0.00 2.66
2568 3203 9.912634 TCTTTGGATGTGATTTTATTCAGAAAC 57.087 29.630 0.00 0.00 0.00 2.78
2571 3206 8.742777 CCTTCTTTGGATGTGATTTTATTCAGA 58.257 33.333 0.00 0.00 0.00 3.27
2572 3207 7.490402 GCCTTCTTTGGATGTGATTTTATTCAG 59.510 37.037 0.00 0.00 0.00 3.02
2573 3208 7.039152 TGCCTTCTTTGGATGTGATTTTATTCA 60.039 33.333 0.00 0.00 0.00 2.57
2574 3209 7.322664 TGCCTTCTTTGGATGTGATTTTATTC 58.677 34.615 0.00 0.00 0.00 1.75
2575 3210 7.243604 TGCCTTCTTTGGATGTGATTTTATT 57.756 32.000 0.00 0.00 0.00 1.40
2576 3211 6.855763 TGCCTTCTTTGGATGTGATTTTAT 57.144 33.333 0.00 0.00 0.00 1.40
2577 3212 6.351202 CCATGCCTTCTTTGGATGTGATTTTA 60.351 38.462 0.00 0.00 31.94 1.52
2578 3213 5.484715 CATGCCTTCTTTGGATGTGATTTT 58.515 37.500 0.00 0.00 0.00 1.82
2579 3214 4.081309 CCATGCCTTCTTTGGATGTGATTT 60.081 41.667 0.00 0.00 31.94 2.17
2580 3215 3.449737 CCATGCCTTCTTTGGATGTGATT 59.550 43.478 0.00 0.00 31.94 2.57
2581 3216 3.028850 CCATGCCTTCTTTGGATGTGAT 58.971 45.455 0.00 0.00 31.94 3.06
2582 3217 2.449464 CCATGCCTTCTTTGGATGTGA 58.551 47.619 0.00 0.00 31.94 3.58
2583 3218 1.134907 GCCATGCCTTCTTTGGATGTG 60.135 52.381 0.00 0.00 31.94 3.21
2584 3219 1.188863 GCCATGCCTTCTTTGGATGT 58.811 50.000 0.00 0.00 31.94 3.06
2585 3220 1.187974 TGCCATGCCTTCTTTGGATG 58.812 50.000 0.00 0.00 31.94 3.51
2586 3221 1.941377 TTGCCATGCCTTCTTTGGAT 58.059 45.000 0.00 0.00 31.94 3.41
2587 3222 1.714541 TTTGCCATGCCTTCTTTGGA 58.285 45.000 0.00 0.00 31.94 3.53
2588 3223 2.547299 TTTTGCCATGCCTTCTTTGG 57.453 45.000 0.00 0.00 0.00 3.28
2608 3243 9.783081 ACTATTCTTTTTGGAGCATCAAATTTT 57.217 25.926 5.52 0.00 36.63 1.82
2609 3244 9.783081 AACTATTCTTTTTGGAGCATCAAATTT 57.217 25.926 5.52 0.00 36.63 1.82
2610 3245 9.783081 AAACTATTCTTTTTGGAGCATCAAATT 57.217 25.926 5.52 0.00 36.63 1.82
2611 3246 9.783081 AAAACTATTCTTTTTGGAGCATCAAAT 57.217 25.926 5.52 0.00 36.63 2.32
2668 3303 1.825474 TCCCGAAAGTTGTGGCAAAAA 59.175 42.857 0.00 0.00 0.00 1.94
2669 3304 1.475403 TCCCGAAAGTTGTGGCAAAA 58.525 45.000 0.00 0.00 0.00 2.44
2670 3305 1.475403 TTCCCGAAAGTTGTGGCAAA 58.525 45.000 0.00 0.00 0.00 3.68
2671 3306 1.339610 CATTCCCGAAAGTTGTGGCAA 59.660 47.619 0.00 0.00 0.00 4.52
2672 3307 0.958091 CATTCCCGAAAGTTGTGGCA 59.042 50.000 0.00 0.00 0.00 4.92
2673 3308 0.958822 ACATTCCCGAAAGTTGTGGC 59.041 50.000 0.00 0.00 0.00 5.01
2674 3309 2.226330 TGACATTCCCGAAAGTTGTGG 58.774 47.619 0.00 0.00 0.00 4.17
2675 3310 4.503741 AATGACATTCCCGAAAGTTGTG 57.496 40.909 0.00 0.00 0.00 3.33
2676 3311 5.163457 ACAAAATGACATTCCCGAAAGTTGT 60.163 36.000 0.05 3.28 0.00 3.32
2677 3312 5.175491 CACAAAATGACATTCCCGAAAGTTG 59.825 40.000 0.05 2.67 0.00 3.16
2678 3313 5.288804 CACAAAATGACATTCCCGAAAGTT 58.711 37.500 0.05 0.00 0.00 2.66
2679 3314 4.795962 GCACAAAATGACATTCCCGAAAGT 60.796 41.667 0.05 0.00 0.00 2.66
2680 3315 3.674753 GCACAAAATGACATTCCCGAAAG 59.325 43.478 0.05 0.00 0.00 2.62
2681 3316 3.320541 AGCACAAAATGACATTCCCGAAA 59.679 39.130 0.05 0.00 0.00 3.46
2682 3317 2.890311 AGCACAAAATGACATTCCCGAA 59.110 40.909 0.05 0.00 0.00 4.30
2683 3318 2.513753 AGCACAAAATGACATTCCCGA 58.486 42.857 0.05 0.00 0.00 5.14
2684 3319 4.433186 TTAGCACAAAATGACATTCCCG 57.567 40.909 0.05 0.00 0.00 5.14
2685 3320 7.671495 AATTTTAGCACAAAATGACATTCCC 57.329 32.000 0.05 0.00 30.94 3.97
2686 3321 8.558700 ACAAATTTTAGCACAAAATGACATTCC 58.441 29.630 0.05 0.00 30.94 3.01
2687 3322 9.584839 GACAAATTTTAGCACAAAATGACATTC 57.415 29.630 0.05 0.00 30.94 2.67
2688 3323 9.107177 TGACAAATTTTAGCACAAAATGACATT 57.893 25.926 9.11 0.00 30.94 2.71
2689 3324 8.659925 TGACAAATTTTAGCACAAAATGACAT 57.340 26.923 9.11 0.00 30.94 3.06
2690 3325 8.484641 TTGACAAATTTTAGCACAAAATGACA 57.515 26.923 9.11 4.79 30.94 3.58
2691 3326 7.583762 GCTTGACAAATTTTAGCACAAAATGAC 59.416 33.333 9.11 2.82 30.94 3.06
2692 3327 7.279536 TGCTTGACAAATTTTAGCACAAAATGA 59.720 29.630 9.11 0.00 36.96 2.57
2693 3328 7.408123 TGCTTGACAAATTTTAGCACAAAATG 58.592 30.769 9.11 3.71 36.96 2.32
2694 3329 7.551035 TGCTTGACAAATTTTAGCACAAAAT 57.449 28.000 8.97 3.84 36.96 1.82
2695 3330 6.974932 TGCTTGACAAATTTTAGCACAAAA 57.025 29.167 8.97 0.00 36.96 2.44
2696 3331 7.708322 TGTATGCTTGACAAATTTTAGCACAAA 59.292 29.630 13.23 0.00 43.78 2.83
2697 3332 7.205992 TGTATGCTTGACAAATTTTAGCACAA 58.794 30.769 13.23 5.66 43.78 3.33
2698 3333 6.743110 TGTATGCTTGACAAATTTTAGCACA 58.257 32.000 13.23 7.75 43.78 4.57
2699 3334 7.636259 TTGTATGCTTGACAAATTTTAGCAC 57.364 32.000 13.23 5.95 43.78 4.40
2700 3335 8.547069 GTTTTGTATGCTTGACAAATTTTAGCA 58.453 29.630 13.30 13.30 44.12 3.49
2701 3336 8.547069 TGTTTTGTATGCTTGACAAATTTTAGC 58.453 29.630 10.71 0.00 44.12 3.09
2705 3340 9.719279 CAAATGTTTTGTATGCTTGACAAATTT 57.281 25.926 10.71 7.24 44.12 1.82
2706 3341 8.891720 ACAAATGTTTTGTATGCTTGACAAATT 58.108 25.926 3.90 2.81 44.12 1.82
2707 3342 8.436046 ACAAATGTTTTGTATGCTTGACAAAT 57.564 26.923 3.90 0.00 44.12 2.32
2708 3343 7.547019 TGACAAATGTTTTGTATGCTTGACAAA 59.453 29.630 5.66 7.12 43.29 2.83
2709 3344 7.038048 TGACAAATGTTTTGTATGCTTGACAA 58.962 30.769 5.66 0.00 35.03 3.18
2710 3345 6.567959 TGACAAATGTTTTGTATGCTTGACA 58.432 32.000 5.66 0.00 31.96 3.58
2711 3346 7.462109 TTGACAAATGTTTTGTATGCTTGAC 57.538 32.000 5.66 0.00 31.96 3.18
2712 3347 8.484641 TTTTGACAAATGTTTTGTATGCTTGA 57.515 26.923 0.50 0.00 31.96 3.02
2713 3348 9.719279 AATTTTGACAAATGTTTTGTATGCTTG 57.281 25.926 0.50 0.00 32.57 4.01
2769 3404 9.883142 ACCTTGATGAACAGTAAAATTGAAAAA 57.117 25.926 0.00 0.00 0.00 1.94
2770 3405 9.311916 CACCTTGATGAACAGTAAAATTGAAAA 57.688 29.630 0.00 0.00 0.00 2.29
2771 3406 7.437862 GCACCTTGATGAACAGTAAAATTGAAA 59.562 33.333 0.00 0.00 0.00 2.69
2772 3407 6.922957 GCACCTTGATGAACAGTAAAATTGAA 59.077 34.615 0.00 0.00 0.00 2.69
2773 3408 6.040278 TGCACCTTGATGAACAGTAAAATTGA 59.960 34.615 0.00 0.00 0.00 2.57
2774 3409 6.215121 TGCACCTTGATGAACAGTAAAATTG 58.785 36.000 0.00 0.00 0.00 2.32
2775 3410 6.403866 TGCACCTTGATGAACAGTAAAATT 57.596 33.333 0.00 0.00 0.00 1.82
2776 3411 6.594788 ATGCACCTTGATGAACAGTAAAAT 57.405 33.333 0.00 0.00 0.00 1.82
2777 3412 6.403866 AATGCACCTTGATGAACAGTAAAA 57.596 33.333 0.00 0.00 0.00 1.52
2778 3413 6.040278 TCAAATGCACCTTGATGAACAGTAAA 59.960 34.615 8.61 0.00 0.00 2.01
2779 3414 5.534278 TCAAATGCACCTTGATGAACAGTAA 59.466 36.000 8.61 0.00 0.00 2.24
2780 3415 5.069318 TCAAATGCACCTTGATGAACAGTA 58.931 37.500 8.61 0.00 0.00 2.74
2781 3416 3.890756 TCAAATGCACCTTGATGAACAGT 59.109 39.130 8.61 0.00 0.00 3.55
2782 3417 4.482386 CTCAAATGCACCTTGATGAACAG 58.518 43.478 12.23 0.00 32.53 3.16
2783 3418 4.508461 CTCAAATGCACCTTGATGAACA 57.492 40.909 12.23 0.00 32.53 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.