Multiple sequence alignment - TraesCS6A01G153300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G153300 chr6A 100.000 4489 0 0 1 4489 140608976 140604488 0.000000e+00 8290.0
1 TraesCS6A01G153300 chr6A 97.059 68 2 0 3307 3374 140605634 140605567 1.020000e-21 115.0
2 TraesCS6A01G153300 chr6A 97.059 68 2 0 3343 3410 140605670 140605603 1.020000e-21 115.0
3 TraesCS6A01G153300 chr6A 96.875 32 1 0 3307 3338 140605598 140605567 2.000000e-03 54.7
4 TraesCS6A01G153300 chr6A 96.875 32 1 0 3379 3410 140605670 140605639 2.000000e-03 54.7
5 TraesCS6A01G153300 chr6D 94.308 3654 128 33 845 4489 112942441 112938859 0.000000e+00 5522.0
6 TraesCS6A01G153300 chr6D 85.926 405 46 8 79 477 112943532 112943133 5.370000e-114 422.0
7 TraesCS6A01G153300 chr6D 90.816 98 7 2 477 573 112942534 112942438 3.640000e-26 130.0
8 TraesCS6A01G153300 chr6D 95.588 68 3 0 3343 3410 112940013 112939946 4.750000e-20 110.0
9 TraesCS6A01G153300 chr6D 96.875 32 1 0 3307 3338 112939941 112939910 2.000000e-03 54.7
10 TraesCS6A01G153300 chr6B 96.409 2534 75 11 845 3374 202352002 202349481 0.000000e+00 4161.0
11 TraesCS6A01G153300 chr6B 93.811 824 26 10 3343 4165 202349548 202348749 0.000000e+00 1216.0
12 TraesCS6A01G153300 chr6B 93.598 328 15 2 4163 4489 202348444 202348122 6.750000e-133 484.0
13 TraesCS6A01G153300 chr6B 96.113 283 11 0 563 845 518679768 518680050 3.160000e-126 462.0
14 TraesCS6A01G153300 chr6B 84.309 427 54 8 3 428 202355138 202354724 5.410000e-109 405.0
15 TraesCS6A01G153300 chr6B 81.212 165 12 9 411 573 202352146 202351999 1.020000e-21 115.0
16 TraesCS6A01G153300 chr6B 96.875 32 1 0 3307 3338 202349512 202349481 2.000000e-03 54.7
17 TraesCS6A01G153300 chr6B 96.875 32 1 0 3379 3410 202349548 202349517 2.000000e-03 54.7
18 TraesCS6A01G153300 chr7A 96.763 278 9 0 570 847 681096441 681096718 8.800000e-127 464.0
19 TraesCS6A01G153300 chr7A 96.350 274 10 0 572 845 625741270 625740997 6.850000e-123 451.0
20 TraesCS6A01G153300 chr7A 94.737 285 14 1 570 854 24933414 24933697 4.120000e-120 442.0
21 TraesCS6A01G153300 chr1A 96.715 274 9 0 572 845 436890198 436890471 1.470000e-124 457.0
22 TraesCS6A01G153300 chr1A 95.714 280 11 1 566 845 583816270 583816548 2.460000e-122 449.0
23 TraesCS6A01G153300 chr4B 96.043 278 11 0 570 847 479214694 479214971 1.900000e-123 453.0
24 TraesCS6A01G153300 chr2A 95.406 283 11 2 568 848 158051009 158051291 2.460000e-122 449.0
25 TraesCS6A01G153300 chr5A 95.070 284 13 1 567 849 611640136 611639853 3.190000e-121 446.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G153300 chr6A 140604488 140608976 4488 True 1725.88 8290 97.573600 1 4489 5 chr6A.!!$R1 4488
1 TraesCS6A01G153300 chr6D 112938859 112943532 4673 True 1247.74 5522 92.702600 79 4489 5 chr6D.!!$R1 4410
2 TraesCS6A01G153300 chr6B 202348122 202355138 7016 True 927.20 4161 91.869857 3 4489 7 chr6B.!!$R1 4486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
486 3687 0.035630 GAGACTGGATTGCAGCCTGT 60.036 55.0 16.48 16.48 39.84 4.00 F
1432 4635 0.379669 CGGAATGCATCTTGGACTGC 59.620 55.0 0.00 0.00 38.87 4.40 F
3333 6543 0.461548 GGTGGCATCTCAGACGATGA 59.538 55.0 11.83 0.00 42.63 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2351 5559 0.039256 CACCACCAATGCAAAGGACG 60.039 55.000 14.09 6.17 0.00 4.79 R
3350 6560 0.461548 TCATCGTCTGAGATGCCACC 59.538 55.000 0.00 0.00 45.57 4.61 R
4370 7943 2.033448 AAATGTTCGGCGGCCAGA 59.967 55.556 20.71 14.21 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 3.303593 GCATGACTTGTGTGTGACTGAAG 60.304 47.826 0.00 0.00 0.00 3.02
50 51 3.535561 ACTTGTGTGTGACTGAAGAAGG 58.464 45.455 0.00 0.00 0.00 3.46
52 53 3.459232 TGTGTGTGACTGAAGAAGGAG 57.541 47.619 0.00 0.00 0.00 3.69
55 56 2.224137 TGTGTGACTGAAGAAGGAGCAG 60.224 50.000 0.00 0.00 35.81 4.24
97 98 5.118286 CCATGTTCCTCTTTTGCAGTTTTT 58.882 37.500 0.00 0.00 0.00 1.94
148 149 3.057526 CGATAGGGATTGAGCATCGTGTA 60.058 47.826 0.00 0.00 38.61 2.90
176 177 4.982916 GGCGGAGGATATAAACATATAGCG 59.017 45.833 0.00 0.00 0.00 4.26
185 186 8.984764 GGATATAAACATATAGCGAACACAACA 58.015 33.333 0.00 0.00 0.00 3.33
242 243 8.250143 AGGATTGCCGGATTAGAAAATTTAAT 57.750 30.769 5.05 0.00 39.96 1.40
244 245 8.360390 GGATTGCCGGATTAGAAAATTTAATCT 58.640 33.333 5.05 5.23 37.56 2.40
273 274 2.596904 TTTAGTGGTAGGCGCTCATC 57.403 50.000 7.64 0.00 0.00 2.92
275 276 0.396556 TAGTGGTAGGCGCTCATCCA 60.397 55.000 7.64 8.68 0.00 3.41
285 291 4.523083 AGGCGCTCATCCAGTTAATAAAA 58.477 39.130 7.64 0.00 0.00 1.52
290 296 6.403200 GCGCTCATCCAGTTAATAAAAAGTCA 60.403 38.462 0.00 0.00 0.00 3.41
293 299 8.394121 GCTCATCCAGTTAATAAAAAGTCAGAG 58.606 37.037 0.00 0.00 0.00 3.35
325 332 8.802856 TGATTTCATCAATTTTAATAAACGCCG 58.197 29.630 0.00 0.00 36.11 6.46
331 338 7.136289 TCAATTTTAATAAACGCCGACTCTT 57.864 32.000 0.00 0.00 0.00 2.85
333 340 8.077386 TCAATTTTAATAAACGCCGACTCTTTT 58.923 29.630 0.00 0.00 0.00 2.27
346 353 4.033817 CCGACTCTTTTCATGAAGATGCTC 59.966 45.833 8.41 1.97 35.27 4.26
349 356 5.802465 ACTCTTTTCATGAAGATGCTCTGA 58.198 37.500 8.41 0.00 35.27 3.27
358 365 2.926778 AGATGCTCTGAATAGGGTGC 57.073 50.000 0.00 0.00 0.00 5.01
359 366 2.121948 AGATGCTCTGAATAGGGTGCA 58.878 47.619 0.00 0.00 32.80 4.57
364 371 1.204704 CTCTGAATAGGGTGCACGTGA 59.795 52.381 22.23 1.04 0.00 4.35
451 3053 9.434275 TTGATAGAGATTGACAAATAGGGAGTA 57.566 33.333 0.00 0.00 0.00 2.59
452 3054 8.861086 TGATAGAGATTGACAAATAGGGAGTAC 58.139 37.037 0.00 0.00 0.00 2.73
453 3055 8.783660 ATAGAGATTGACAAATAGGGAGTACA 57.216 34.615 0.00 0.00 0.00 2.90
471 3073 1.338200 ACAAGCAGGATTGGACGAGAC 60.338 52.381 2.12 0.00 34.36 3.36
486 3687 0.035630 GAGACTGGATTGCAGCCTGT 60.036 55.000 16.48 16.48 39.84 4.00
492 3693 0.837272 GGATTGCAGCCTGTAGGGTA 59.163 55.000 1.76 0.00 45.47 3.69
514 3716 5.535753 AGTGGGGATTTGAAAAGAGTTTG 57.464 39.130 0.00 0.00 0.00 2.93
515 3717 4.058124 GTGGGGATTTGAAAAGAGTTTGC 58.942 43.478 0.00 0.00 0.00 3.68
521 3723 5.050567 GGATTTGAAAAGAGTTTGCTTGCTG 60.051 40.000 0.00 0.00 0.00 4.41
532 3734 0.664761 TGCTTGCTGCTCTTTGTGTC 59.335 50.000 0.00 0.00 43.37 3.67
533 3735 0.950116 GCTTGCTGCTCTTTGTGTCT 59.050 50.000 0.00 0.00 38.95 3.41
573 3775 5.484715 TGAAGGTGAAGTAAACGGATAAGG 58.515 41.667 0.00 0.00 0.00 2.69
574 3776 4.482952 AGGTGAAGTAAACGGATAAGGG 57.517 45.455 0.00 0.00 0.00 3.95
575 3777 2.941064 GGTGAAGTAAACGGATAAGGGC 59.059 50.000 0.00 0.00 0.00 5.19
576 3778 3.602483 GTGAAGTAAACGGATAAGGGCA 58.398 45.455 0.00 0.00 0.00 5.36
577 3779 4.196971 GTGAAGTAAACGGATAAGGGCAT 58.803 43.478 0.00 0.00 0.00 4.40
578 3780 4.035208 GTGAAGTAAACGGATAAGGGCATG 59.965 45.833 0.00 0.00 0.00 4.06
579 3781 3.926058 AGTAAACGGATAAGGGCATGT 57.074 42.857 0.00 0.00 0.00 3.21
580 3782 5.104859 TGAAGTAAACGGATAAGGGCATGTA 60.105 40.000 0.00 0.00 0.00 2.29
581 3783 4.700700 AGTAAACGGATAAGGGCATGTAC 58.299 43.478 0.00 0.00 0.00 2.90
582 3784 3.637911 AAACGGATAAGGGCATGTACA 57.362 42.857 0.00 0.00 0.00 2.90
583 3785 3.637911 AACGGATAAGGGCATGTACAA 57.362 42.857 0.00 0.00 0.00 2.41
584 3786 3.857157 ACGGATAAGGGCATGTACAAT 57.143 42.857 0.00 0.00 0.00 2.71
585 3787 3.476552 ACGGATAAGGGCATGTACAATG 58.523 45.455 0.00 0.12 0.00 2.82
586 3788 3.135712 ACGGATAAGGGCATGTACAATGA 59.864 43.478 0.00 0.00 0.00 2.57
587 3789 4.202461 ACGGATAAGGGCATGTACAATGAT 60.202 41.667 0.00 0.00 0.00 2.45
588 3790 4.154737 CGGATAAGGGCATGTACAATGATG 59.845 45.833 0.00 0.00 0.00 3.07
589 3791 5.072741 GGATAAGGGCATGTACAATGATGT 58.927 41.667 0.00 0.00 43.74 3.06
590 3792 5.536161 GGATAAGGGCATGTACAATGATGTT 59.464 40.000 0.00 0.00 41.05 2.71
591 3793 6.714810 GGATAAGGGCATGTACAATGATGTTA 59.285 38.462 0.00 0.00 41.05 2.41
592 3794 7.394359 GGATAAGGGCATGTACAATGATGTTAT 59.606 37.037 0.00 0.00 41.05 1.89
593 3795 6.639632 AAGGGCATGTACAATGATGTTATC 57.360 37.500 0.00 0.00 41.05 1.75
594 3796 5.945310 AGGGCATGTACAATGATGTTATCT 58.055 37.500 0.00 0.00 41.05 1.98
595 3797 6.367983 AGGGCATGTACAATGATGTTATCTT 58.632 36.000 0.00 0.00 41.05 2.40
596 3798 7.517320 AGGGCATGTACAATGATGTTATCTTA 58.483 34.615 0.00 0.00 41.05 2.10
597 3799 7.663081 AGGGCATGTACAATGATGTTATCTTAG 59.337 37.037 0.00 0.00 41.05 2.18
598 3800 7.094634 GGGCATGTACAATGATGTTATCTTAGG 60.095 40.741 0.00 0.00 41.05 2.69
599 3801 7.661437 GGCATGTACAATGATGTTATCTTAGGA 59.339 37.037 0.00 0.00 41.05 2.94
600 3802 8.715998 GCATGTACAATGATGTTATCTTAGGAG 58.284 37.037 0.00 0.00 41.05 3.69
601 3803 9.770097 CATGTACAATGATGTTATCTTAGGAGT 57.230 33.333 0.00 0.00 41.05 3.85
602 3804 9.770097 ATGTACAATGATGTTATCTTAGGAGTG 57.230 33.333 0.00 0.00 41.05 3.51
603 3805 7.710907 TGTACAATGATGTTATCTTAGGAGTGC 59.289 37.037 0.00 0.00 41.05 4.40
604 3806 6.058183 ACAATGATGTTATCTTAGGAGTGCC 58.942 40.000 0.00 0.00 35.91 5.01
605 3807 5.894298 ATGATGTTATCTTAGGAGTGCCA 57.106 39.130 0.00 0.00 36.29 4.92
606 3808 5.023533 TGATGTTATCTTAGGAGTGCCAC 57.976 43.478 0.00 0.00 36.29 5.01
607 3809 3.520290 TGTTATCTTAGGAGTGCCACG 57.480 47.619 0.00 0.00 36.29 4.94
608 3810 2.829720 TGTTATCTTAGGAGTGCCACGT 59.170 45.455 0.00 0.00 36.29 4.49
609 3811 4.018490 TGTTATCTTAGGAGTGCCACGTA 58.982 43.478 0.00 0.00 36.29 3.57
610 3812 4.097437 TGTTATCTTAGGAGTGCCACGTAG 59.903 45.833 0.00 0.00 36.29 3.51
611 3813 2.502142 TCTTAGGAGTGCCACGTAGA 57.498 50.000 0.00 0.00 36.29 2.59
612 3814 2.799017 TCTTAGGAGTGCCACGTAGAA 58.201 47.619 0.00 0.00 36.29 2.10
613 3815 3.362706 TCTTAGGAGTGCCACGTAGAAT 58.637 45.455 0.00 0.00 36.29 2.40
614 3816 4.529897 TCTTAGGAGTGCCACGTAGAATA 58.470 43.478 0.00 0.00 36.29 1.75
615 3817 4.951715 TCTTAGGAGTGCCACGTAGAATAA 59.048 41.667 0.00 0.00 36.29 1.40
616 3818 5.419788 TCTTAGGAGTGCCACGTAGAATAAA 59.580 40.000 0.00 0.00 36.29 1.40
617 3819 4.755266 AGGAGTGCCACGTAGAATAAAT 57.245 40.909 0.00 0.00 36.29 1.40
618 3820 4.442706 AGGAGTGCCACGTAGAATAAATG 58.557 43.478 0.00 0.00 36.29 2.32
619 3821 4.161565 AGGAGTGCCACGTAGAATAAATGA 59.838 41.667 0.00 0.00 36.29 2.57
620 3822 5.057149 GGAGTGCCACGTAGAATAAATGAT 58.943 41.667 0.00 0.00 0.00 2.45
621 3823 5.050091 GGAGTGCCACGTAGAATAAATGATG 60.050 44.000 0.00 0.00 0.00 3.07
622 3824 5.670485 AGTGCCACGTAGAATAAATGATGA 58.330 37.500 0.00 0.00 0.00 2.92
623 3825 5.755375 AGTGCCACGTAGAATAAATGATGAG 59.245 40.000 0.00 0.00 0.00 2.90
624 3826 5.050091 GTGCCACGTAGAATAAATGATGAGG 60.050 44.000 0.00 0.00 0.00 3.86
625 3827 5.057149 GCCACGTAGAATAAATGATGAGGT 58.943 41.667 0.00 0.00 0.00 3.85
626 3828 5.050091 GCCACGTAGAATAAATGATGAGGTG 60.050 44.000 0.00 0.00 0.00 4.00
627 3829 5.466728 CCACGTAGAATAAATGATGAGGTGG 59.533 44.000 0.00 0.00 34.75 4.61
628 3830 6.280643 CACGTAGAATAAATGATGAGGTGGA 58.719 40.000 0.00 0.00 0.00 4.02
629 3831 6.422100 CACGTAGAATAAATGATGAGGTGGAG 59.578 42.308 0.00 0.00 0.00 3.86
630 3832 5.928839 CGTAGAATAAATGATGAGGTGGAGG 59.071 44.000 0.00 0.00 0.00 4.30
631 3833 6.239317 CGTAGAATAAATGATGAGGTGGAGGA 60.239 42.308 0.00 0.00 0.00 3.71
632 3834 6.185114 AGAATAAATGATGAGGTGGAGGAG 57.815 41.667 0.00 0.00 0.00 3.69
633 3835 5.907662 AGAATAAATGATGAGGTGGAGGAGA 59.092 40.000 0.00 0.00 0.00 3.71
634 3836 5.822132 ATAAATGATGAGGTGGAGGAGAG 57.178 43.478 0.00 0.00 0.00 3.20
635 3837 3.411454 AATGATGAGGTGGAGGAGAGA 57.589 47.619 0.00 0.00 0.00 3.10
636 3838 2.450867 TGATGAGGTGGAGGAGAGAG 57.549 55.000 0.00 0.00 0.00 3.20
637 3839 1.925959 TGATGAGGTGGAGGAGAGAGA 59.074 52.381 0.00 0.00 0.00 3.10
638 3840 2.313041 TGATGAGGTGGAGGAGAGAGAA 59.687 50.000 0.00 0.00 0.00 2.87
639 3841 2.223803 TGAGGTGGAGGAGAGAGAAC 57.776 55.000 0.00 0.00 0.00 3.01
640 3842 1.713647 TGAGGTGGAGGAGAGAGAACT 59.286 52.381 0.00 0.00 0.00 3.01
641 3843 2.291282 TGAGGTGGAGGAGAGAGAACTC 60.291 54.545 0.00 0.00 42.90 3.01
642 3844 1.713647 AGGTGGAGGAGAGAGAACTCA 59.286 52.381 4.64 0.00 44.79 3.41
643 3845 2.314549 AGGTGGAGGAGAGAGAACTCAT 59.685 50.000 4.64 0.00 44.79 2.90
644 3846 3.529734 AGGTGGAGGAGAGAGAACTCATA 59.470 47.826 4.64 0.00 44.79 2.15
645 3847 4.017037 AGGTGGAGGAGAGAGAACTCATAA 60.017 45.833 4.64 0.00 44.79 1.90
646 3848 4.340950 GGTGGAGGAGAGAGAACTCATAAG 59.659 50.000 4.64 0.00 44.79 1.73
647 3849 5.197451 GTGGAGGAGAGAGAACTCATAAGA 58.803 45.833 4.64 0.00 44.79 2.10
648 3850 5.654650 GTGGAGGAGAGAGAACTCATAAGAA 59.345 44.000 4.64 0.00 44.79 2.52
649 3851 6.153680 GTGGAGGAGAGAGAACTCATAAGAAA 59.846 42.308 4.64 0.00 44.79 2.52
650 3852 6.726299 TGGAGGAGAGAGAACTCATAAGAAAA 59.274 38.462 4.64 0.00 44.79 2.29
651 3853 7.093552 TGGAGGAGAGAGAACTCATAAGAAAAG 60.094 40.741 4.64 0.00 44.79 2.27
652 3854 7.181569 AGGAGAGAGAACTCATAAGAAAAGG 57.818 40.000 4.64 0.00 44.79 3.11
653 3855 5.815222 GGAGAGAGAACTCATAAGAAAAGGC 59.185 44.000 4.64 0.00 44.79 4.35
654 3856 6.351796 GGAGAGAGAACTCATAAGAAAAGGCT 60.352 42.308 4.64 0.00 44.79 4.58
655 3857 7.014988 AGAGAGAACTCATAAGAAAAGGCTT 57.985 36.000 0.00 0.00 44.79 4.35
656 3858 6.878389 AGAGAGAACTCATAAGAAAAGGCTTG 59.122 38.462 0.00 0.00 44.79 4.01
657 3859 6.538263 AGAGAACTCATAAGAAAAGGCTTGT 58.462 36.000 0.00 0.00 0.00 3.16
658 3860 6.652900 AGAGAACTCATAAGAAAAGGCTTGTC 59.347 38.462 9.51 9.51 0.00 3.18
659 3861 6.538263 AGAACTCATAAGAAAAGGCTTGTCT 58.462 36.000 14.33 14.33 0.00 3.41
660 3862 7.001073 AGAACTCATAAGAAAAGGCTTGTCTT 58.999 34.615 30.04 30.04 35.77 3.01
661 3863 6.809630 ACTCATAAGAAAAGGCTTGTCTTC 57.190 37.500 30.86 17.17 33.70 2.87
662 3864 6.538263 ACTCATAAGAAAAGGCTTGTCTTCT 58.462 36.000 30.86 21.01 33.70 2.85
663 3865 6.652900 ACTCATAAGAAAAGGCTTGTCTTCTC 59.347 38.462 30.86 8.39 33.70 2.87
664 3866 6.773638 TCATAAGAAAAGGCTTGTCTTCTCT 58.226 36.000 30.86 16.87 33.70 3.10
665 3867 7.227156 TCATAAGAAAAGGCTTGTCTTCTCTT 58.773 34.615 30.86 18.21 37.66 2.85
666 3868 8.375506 TCATAAGAAAAGGCTTGTCTTCTCTTA 58.624 33.333 30.86 16.85 39.30 2.10
667 3869 9.171877 CATAAGAAAAGGCTTGTCTTCTCTTAT 57.828 33.333 30.86 18.17 42.82 1.73
668 3870 9.746457 ATAAGAAAAGGCTTGTCTTCTCTTATT 57.254 29.630 30.86 11.70 40.94 1.40
669 3871 8.470657 AAGAAAAGGCTTGTCTTCTCTTATTT 57.529 30.769 23.96 2.07 33.68 1.40
670 3872 9.574516 AAGAAAAGGCTTGTCTTCTCTTATTTA 57.425 29.630 23.96 0.00 33.68 1.40
671 3873 9.574516 AGAAAAGGCTTGTCTTCTCTTATTTAA 57.425 29.630 14.33 0.00 0.00 1.52
672 3874 9.833182 GAAAAGGCTTGTCTTCTCTTATTTAAG 57.167 33.333 10.26 0.00 34.65 1.85
673 3875 9.574516 AAAAGGCTTGTCTTCTCTTATTTAAGA 57.425 29.630 0.00 0.44 39.82 2.10
674 3876 9.746457 AAAGGCTTGTCTTCTCTTATTTAAGAT 57.254 29.630 0.00 0.00 41.12 2.40
706 3908 7.551035 GAGATGATCTCTTAGCACAATTTGT 57.449 36.000 14.98 0.00 40.30 2.83
707 3909 7.551035 AGATGATCTCTTAGCACAATTTGTC 57.449 36.000 0.00 0.00 0.00 3.18
708 3910 7.337167 AGATGATCTCTTAGCACAATTTGTCT 58.663 34.615 0.00 3.34 0.00 3.41
709 3911 6.974932 TGATCTCTTAGCACAATTTGTCTC 57.025 37.500 0.00 0.00 0.00 3.36
710 3912 6.466812 TGATCTCTTAGCACAATTTGTCTCA 58.533 36.000 0.00 0.00 0.00 3.27
711 3913 6.369890 TGATCTCTTAGCACAATTTGTCTCAC 59.630 38.462 0.00 0.00 0.00 3.51
712 3914 4.997395 TCTCTTAGCACAATTTGTCTCACC 59.003 41.667 0.00 0.00 0.00 4.02
713 3915 4.713553 TCTTAGCACAATTTGTCTCACCA 58.286 39.130 0.00 0.00 0.00 4.17
714 3916 5.316167 TCTTAGCACAATTTGTCTCACCAT 58.684 37.500 0.00 0.00 0.00 3.55
715 3917 3.928727 AGCACAATTTGTCTCACCATG 57.071 42.857 0.00 0.00 0.00 3.66
716 3918 3.225104 AGCACAATTTGTCTCACCATGT 58.775 40.909 0.00 0.00 0.00 3.21
717 3919 3.638160 AGCACAATTTGTCTCACCATGTT 59.362 39.130 0.00 0.00 0.00 2.71
718 3920 4.099881 AGCACAATTTGTCTCACCATGTTT 59.900 37.500 0.00 0.00 0.00 2.83
719 3921 4.810491 GCACAATTTGTCTCACCATGTTTT 59.190 37.500 0.00 0.00 0.00 2.43
720 3922 5.982516 GCACAATTTGTCTCACCATGTTTTA 59.017 36.000 0.00 0.00 0.00 1.52
721 3923 6.478344 GCACAATTTGTCTCACCATGTTTTAA 59.522 34.615 0.00 0.00 0.00 1.52
722 3924 7.306749 GCACAATTTGTCTCACCATGTTTTAAG 60.307 37.037 0.00 0.00 0.00 1.85
723 3925 7.169645 CACAATTTGTCTCACCATGTTTTAAGG 59.830 37.037 0.00 0.00 0.00 2.69
724 3926 7.069331 ACAATTTGTCTCACCATGTTTTAAGGA 59.931 33.333 0.00 0.00 0.00 3.36
725 3927 7.595819 ATTTGTCTCACCATGTTTTAAGGAA 57.404 32.000 0.00 0.00 0.00 3.36
726 3928 7.595819 TTTGTCTCACCATGTTTTAAGGAAT 57.404 32.000 0.00 0.00 0.00 3.01
727 3929 7.595819 TTGTCTCACCATGTTTTAAGGAATT 57.404 32.000 0.00 0.00 0.00 2.17
728 3930 6.980593 TGTCTCACCATGTTTTAAGGAATTG 58.019 36.000 0.00 0.00 0.00 2.32
729 3931 5.863935 GTCTCACCATGTTTTAAGGAATTGC 59.136 40.000 0.00 0.00 0.00 3.56
730 3932 5.774690 TCTCACCATGTTTTAAGGAATTGCT 59.225 36.000 0.00 0.00 0.00 3.91
731 3933 6.945435 TCTCACCATGTTTTAAGGAATTGCTA 59.055 34.615 0.00 0.00 0.00 3.49
732 3934 7.121168 TCTCACCATGTTTTAAGGAATTGCTAG 59.879 37.037 0.00 0.00 0.00 3.42
733 3935 6.719370 TCACCATGTTTTAAGGAATTGCTAGT 59.281 34.615 0.00 0.00 0.00 2.57
734 3936 7.232534 TCACCATGTTTTAAGGAATTGCTAGTT 59.767 33.333 0.00 0.00 0.00 2.24
735 3937 8.519526 CACCATGTTTTAAGGAATTGCTAGTTA 58.480 33.333 0.00 0.00 0.00 2.24
736 3938 9.255029 ACCATGTTTTAAGGAATTGCTAGTTAT 57.745 29.630 0.00 0.00 0.00 1.89
747 3949 9.566432 AGGAATTGCTAGTTATTGAAGATAAGG 57.434 33.333 0.00 0.00 0.00 2.69
748 3950 8.293157 GGAATTGCTAGTTATTGAAGATAAGGC 58.707 37.037 0.00 0.00 0.00 4.35
749 3951 8.986929 AATTGCTAGTTATTGAAGATAAGGCT 57.013 30.769 0.00 0.00 0.00 4.58
752 3954 9.547753 TTGCTAGTTATTGAAGATAAGGCTAAG 57.452 33.333 0.00 0.00 0.00 2.18
753 3955 8.924303 TGCTAGTTATTGAAGATAAGGCTAAGA 58.076 33.333 0.00 0.00 0.00 2.10
754 3956 9.936759 GCTAGTTATTGAAGATAAGGCTAAGAT 57.063 33.333 0.00 0.00 0.00 2.40
770 3972 9.726438 AAGGCTAAGATATAATCCATTGTACAC 57.274 33.333 0.00 0.00 0.00 2.90
771 3973 8.880244 AGGCTAAGATATAATCCATTGTACACA 58.120 33.333 0.00 0.00 0.00 3.72
772 3974 9.672673 GGCTAAGATATAATCCATTGTACACAT 57.327 33.333 0.00 0.00 0.00 3.21
784 3986 8.628630 TCCATTGTACACATATTCTTTTGTCA 57.371 30.769 0.00 0.00 0.00 3.58
785 3987 9.241919 TCCATTGTACACATATTCTTTTGTCAT 57.758 29.630 0.00 0.00 0.00 3.06
786 3988 9.507280 CCATTGTACACATATTCTTTTGTCATC 57.493 33.333 0.00 0.00 0.00 2.92
789 3991 9.725019 TTGTACACATATTCTTTTGTCATCTCT 57.275 29.630 0.00 0.00 0.00 3.10
801 4003 9.230122 TCTTTTGTCATCTCTAAATTACATGCA 57.770 29.630 0.00 0.00 0.00 3.96
802 4004 9.844790 CTTTTGTCATCTCTAAATTACATGCAA 57.155 29.630 0.00 0.00 0.00 4.08
803 4005 9.844790 TTTTGTCATCTCTAAATTACATGCAAG 57.155 29.630 0.00 0.00 0.00 4.01
804 4006 8.791327 TTGTCATCTCTAAATTACATGCAAGA 57.209 30.769 0.00 0.00 0.00 3.02
805 4007 8.201554 TGTCATCTCTAAATTACATGCAAGAC 57.798 34.615 0.00 0.00 0.00 3.01
806 4008 8.043113 TGTCATCTCTAAATTACATGCAAGACT 58.957 33.333 0.00 0.00 0.00 3.24
807 4009 8.887717 GTCATCTCTAAATTACATGCAAGACTT 58.112 33.333 0.00 0.00 0.00 3.01
819 4021 7.840342 ACATGCAAGACTTAAGATAAGACTG 57.160 36.000 10.09 2.08 0.00 3.51
820 4022 7.390027 ACATGCAAGACTTAAGATAAGACTGT 58.610 34.615 10.09 2.69 0.00 3.55
821 4023 7.547370 ACATGCAAGACTTAAGATAAGACTGTC 59.453 37.037 10.09 0.00 0.00 3.51
822 4024 7.233389 TGCAAGACTTAAGATAAGACTGTCT 57.767 36.000 10.09 4.06 35.20 3.41
823 4025 7.671302 TGCAAGACTTAAGATAAGACTGTCTT 58.329 34.615 24.80 24.80 41.90 3.01
824 4026 8.803235 TGCAAGACTTAAGATAAGACTGTCTTA 58.197 33.333 27.13 27.13 42.49 2.10
837 4039 7.907214 AAGACTGTCTTATCAACCATTGTAC 57.093 36.000 20.85 0.00 34.42 2.90
838 4040 7.004555 AGACTGTCTTATCAACCATTGTACA 57.995 36.000 4.06 0.00 0.00 2.90
839 4041 7.624549 AGACTGTCTTATCAACCATTGTACAT 58.375 34.615 4.06 0.00 0.00 2.29
840 4042 7.550551 AGACTGTCTTATCAACCATTGTACATG 59.449 37.037 4.06 0.00 0.00 3.21
841 4043 6.094048 ACTGTCTTATCAACCATTGTACATGC 59.906 38.462 0.00 0.00 0.00 4.06
842 4044 5.356751 TGTCTTATCAACCATTGTACATGCC 59.643 40.000 0.00 0.00 0.00 4.40
843 4045 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
844 4046 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
845 4047 4.518278 ATCAACCATTGTACATGCCCTA 57.482 40.909 0.00 0.00 0.00 3.53
846 4048 4.308526 TCAACCATTGTACATGCCCTAA 57.691 40.909 0.00 0.00 0.00 2.69
847 4049 4.269183 TCAACCATTGTACATGCCCTAAG 58.731 43.478 0.00 0.00 0.00 2.18
861 4063 5.450818 TGCCCTAAGACATCTACCAAATT 57.549 39.130 0.00 0.00 0.00 1.82
942 4145 1.066787 CGTCCCCACCTTCTTCTCTTC 60.067 57.143 0.00 0.00 0.00 2.87
946 4149 1.205893 CCCACCTTCTTCTCTTCCTCG 59.794 57.143 0.00 0.00 0.00 4.63
981 4184 1.147153 CTCCATCGCTTCTTCCCCC 59.853 63.158 0.00 0.00 0.00 5.40
982 4185 2.203070 CCATCGCTTCTTCCCCCG 60.203 66.667 0.00 0.00 0.00 5.73
1166 4369 2.123251 GCCCTCCTCTCCGATGGA 60.123 66.667 0.00 0.00 0.00 3.41
1432 4635 0.379669 CGGAATGCATCTTGGACTGC 59.620 55.000 0.00 0.00 38.87 4.40
1438 4641 1.442526 GCATCTTGGACTGCATCGGG 61.443 60.000 0.00 0.00 38.28 5.14
1477 4680 0.547471 TCCCAGCAGAGACCATGGAA 60.547 55.000 21.47 0.00 34.60 3.53
1618 4821 1.951130 CGATGAGATTCGGGTGCGG 60.951 63.158 0.00 0.00 35.50 5.69
1667 4870 4.917385 TGATTTAGCCTGTGTGGTATTGT 58.083 39.130 0.00 0.00 38.35 2.71
1669 4872 6.477253 TGATTTAGCCTGTGTGGTATTGTAA 58.523 36.000 0.00 0.00 38.35 2.41
1670 4873 7.116075 TGATTTAGCCTGTGTGGTATTGTAAT 58.884 34.615 0.00 0.00 38.35 1.89
1671 4874 6.751514 TTTAGCCTGTGTGGTATTGTAATG 57.248 37.500 0.00 0.00 38.35 1.90
1672 4875 4.568072 AGCCTGTGTGGTATTGTAATGA 57.432 40.909 0.00 0.00 38.35 2.57
1673 4876 4.517285 AGCCTGTGTGGTATTGTAATGAG 58.483 43.478 0.00 0.00 38.35 2.90
1707 4910 5.065218 CCTCTTTCATAGTGCACACCATTAC 59.935 44.000 21.04 0.00 0.00 1.89
1711 4914 4.905429 TCATAGTGCACACCATTACTTGT 58.095 39.130 21.04 0.00 0.00 3.16
1729 4932 6.655078 ACTTGTTTGCTTGATTGATTAGGT 57.345 33.333 0.00 0.00 0.00 3.08
1733 4936 9.474920 CTTGTTTGCTTGATTGATTAGGTTAAA 57.525 29.630 0.00 0.00 0.00 1.52
1821 5029 7.371159 TGTCAGGTGATTGATCGATAGTATTC 58.629 38.462 0.00 0.00 37.40 1.75
1831 5039 5.070446 TGATCGATAGTATTCATATGCCCCC 59.930 44.000 0.00 0.00 37.40 5.40
1887 5095 6.326583 TGGTGACCCTATATACTCTTCAAAGG 59.673 42.308 0.00 0.00 0.00 3.11
2030 5238 4.960469 CCAGAGTTCCCTATGTTACAGGTA 59.040 45.833 0.00 0.00 0.00 3.08
2142 5350 8.652290 AGTCAAAGAACTCTTATACTCCACTTT 58.348 33.333 0.00 0.00 34.61 2.66
2170 5378 7.809806 CCAGAATTTCTCATGTTTAGGACAAAC 59.190 37.037 0.00 0.00 42.62 2.93
2173 5381 9.696917 GAATTTCTCATGTTTAGGACAAACAAT 57.303 29.630 6.65 0.00 42.57 2.71
2208 5416 8.692710 AGTTTGTGATTACGAGATCCACTAATA 58.307 33.333 0.00 0.00 0.00 0.98
2209 5417 9.477484 GTTTGTGATTACGAGATCCACTAATAT 57.523 33.333 0.00 0.00 0.00 1.28
2240 5448 5.186198 TCTTTTTAGTTCTCCTAGCCATGC 58.814 41.667 0.00 0.00 0.00 4.06
2351 5559 4.344865 TTCAAGCTCCCACGCCCC 62.345 66.667 0.00 0.00 0.00 5.80
2422 5630 6.981762 ACAGAAACAAGAAGCAGATGATAG 57.018 37.500 0.00 0.00 0.00 2.08
2539 5748 2.416431 GGCTGCTAGTGGAAATGCAAAG 60.416 50.000 0.00 0.00 34.90 2.77
2574 5783 4.338012 TCACTGCACCATGAAGAATGAAT 58.662 39.130 0.00 0.00 38.72 2.57
2768 5978 5.966742 AAGTTTGCTCAATTTAGGTCCTC 57.033 39.130 0.00 0.00 0.00 3.71
2769 5979 4.336280 AGTTTGCTCAATTTAGGTCCTCC 58.664 43.478 0.00 0.00 0.00 4.30
2833 6043 8.662141 GCATGCATTTTGAGATTTATTTTGACT 58.338 29.630 14.21 0.00 0.00 3.41
3034 6244 8.894409 TGTAAATTAGAAATGCTGAAACATCG 57.106 30.769 0.00 0.00 0.00 3.84
3237 6447 2.359900 GGAGTGGCACTATCTTGTTGG 58.640 52.381 22.11 0.00 0.00 3.77
3329 6539 0.817654 TGTAGGTGGCATCTCAGACG 59.182 55.000 2.02 0.00 0.00 4.18
3330 6540 1.103803 GTAGGTGGCATCTCAGACGA 58.896 55.000 2.02 0.00 0.00 4.20
3331 6541 1.683917 GTAGGTGGCATCTCAGACGAT 59.316 52.381 2.02 0.00 0.00 3.73
3332 6542 0.463204 AGGTGGCATCTCAGACGATG 59.537 55.000 0.00 0.00 42.83 3.84
3333 6543 0.461548 GGTGGCATCTCAGACGATGA 59.538 55.000 11.83 0.00 42.63 2.92
3334 6544 1.069823 GGTGGCATCTCAGACGATGAT 59.930 52.381 11.83 0.00 42.63 2.45
3335 6545 2.402305 GTGGCATCTCAGACGATGATC 58.598 52.381 11.83 0.00 42.63 2.92
3336 6546 2.034124 TGGCATCTCAGACGATGATCA 58.966 47.619 0.00 0.00 42.63 2.92
3337 6547 2.631545 TGGCATCTCAGACGATGATCAT 59.368 45.455 8.25 8.25 42.63 2.45
3338 6548 2.994578 GGCATCTCAGACGATGATCATG 59.005 50.000 14.30 8.18 42.63 3.07
3339 6549 3.305881 GGCATCTCAGACGATGATCATGA 60.306 47.826 14.30 4.24 42.63 3.07
3340 6550 4.304939 GCATCTCAGACGATGATCATGAA 58.695 43.478 14.30 0.00 42.63 2.57
3341 6551 4.386350 GCATCTCAGACGATGATCATGAAG 59.614 45.833 14.30 6.89 42.63 3.02
3342 6552 5.770417 CATCTCAGACGATGATCATGAAGA 58.230 41.667 14.30 6.80 42.63 2.87
3343 6553 6.391537 CATCTCAGACGATGATCATGAAGAT 58.608 40.000 14.30 8.67 42.63 2.40
3344 6554 5.770417 TCTCAGACGATGATCATGAAGATG 58.230 41.667 14.30 5.64 37.28 2.90
3345 6555 5.533903 TCTCAGACGATGATCATGAAGATGA 59.466 40.000 14.30 9.52 42.92 2.92
3355 6565 4.077300 TCATGAAGATGATGTAGGTGGC 57.923 45.455 0.00 0.00 33.40 5.01
3356 6566 3.455543 TCATGAAGATGATGTAGGTGGCA 59.544 43.478 0.00 0.00 33.40 4.92
3357 6567 4.103627 TCATGAAGATGATGTAGGTGGCAT 59.896 41.667 0.00 0.00 33.40 4.40
3358 6568 4.077300 TGAAGATGATGTAGGTGGCATC 57.923 45.455 0.00 0.00 42.10 3.91
3359 6569 3.713248 TGAAGATGATGTAGGTGGCATCT 59.287 43.478 5.22 5.22 46.77 2.90
3360 6570 4.202295 TGAAGATGATGTAGGTGGCATCTC 60.202 45.833 2.02 0.00 44.75 2.75
3361 6571 3.311990 AGATGATGTAGGTGGCATCTCA 58.688 45.455 2.02 2.67 42.66 3.27
3362 6572 3.324268 AGATGATGTAGGTGGCATCTCAG 59.676 47.826 2.02 0.00 42.66 3.35
3363 6573 2.750814 TGATGTAGGTGGCATCTCAGA 58.249 47.619 2.02 0.00 42.21 3.27
3364 6574 2.432146 TGATGTAGGTGGCATCTCAGAC 59.568 50.000 2.02 0.00 42.21 3.51
3527 6773 3.225104 TGCAAACATTTCTGAAGCCTCT 58.775 40.909 0.00 0.00 0.00 3.69
3570 6816 4.486090 TGATCGAGACAAGTTGCTCTTAC 58.514 43.478 18.72 12.42 34.66 2.34
3574 6820 2.987821 GAGACAAGTTGCTCTTACGGTC 59.012 50.000 15.70 0.00 34.66 4.79
3617 6864 4.857037 GCTCGTGTTTTCTCTTGTGTTTTT 59.143 37.500 0.00 0.00 0.00 1.94
3630 6877 6.616947 TCTTGTGTTTTTGTTTAGTGGTGAG 58.383 36.000 0.00 0.00 0.00 3.51
3715 6962 7.878036 TGGCACACTATGAATTCATGATATTG 58.122 34.615 27.59 18.34 37.15 1.90
3716 6963 7.503230 TGGCACACTATGAATTCATGATATTGT 59.497 33.333 27.59 18.90 37.15 2.71
3717 6964 9.002600 GGCACACTATGAATTCATGATATTGTA 57.997 33.333 27.59 7.09 37.15 2.41
3829 7094 3.019564 CTCAGGCTTATGGAACCTTTGG 58.980 50.000 0.00 0.00 0.00 3.28
3833 7098 2.359249 GGCTTATGGAACCTTTGGGGAT 60.359 50.000 0.00 0.00 38.76 3.85
3892 7157 1.214673 ACCATGGCATCTGAGAAGCAT 59.785 47.619 13.04 0.94 0.00 3.79
3894 7159 1.609072 CATGGCATCTGAGAAGCATGG 59.391 52.381 12.01 0.00 0.00 3.66
3910 7175 2.629137 GCATGGGTCATTATGCCATCAA 59.371 45.455 2.09 0.00 42.88 2.57
3936 7201 4.451900 CCATGTTGGTATCCTGGTAAGTC 58.548 47.826 0.00 0.00 31.35 3.01
4023 7288 2.370849 GTCCACAACCAGTCCCTTTAGA 59.629 50.000 0.00 0.00 0.00 2.10
4024 7289 3.009143 GTCCACAACCAGTCCCTTTAGAT 59.991 47.826 0.00 0.00 0.00 1.98
4115 7380 4.406648 TGGCCACTATCTATCACACAAG 57.593 45.455 0.00 0.00 0.00 3.16
4370 7943 5.505181 TCTTTTCTGAATTAGTCCTGGCT 57.495 39.130 0.00 0.00 0.00 4.75
4434 8007 2.102925 CCTGGAAATGCTGGTGTTTGTT 59.897 45.455 0.00 0.00 0.00 2.83
4452 8025 6.127479 TGTTTGTTGTTCTTCAGGCATAGTTT 60.127 34.615 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.096551 GCAGCCTGGTTTATTTTATTTTGAGA 58.903 34.615 0.00 0.00 0.00 3.27
1 2 6.873076 TGCAGCCTGGTTTATTTTATTTTGAG 59.127 34.615 0.00 0.00 0.00 3.02
9 10 3.834231 AGTCATGCAGCCTGGTTTATTTT 59.166 39.130 0.00 0.00 0.00 1.82
16 17 0.892358 CACAAGTCATGCAGCCTGGT 60.892 55.000 0.00 0.00 0.00 4.00
18 19 0.240145 CACACAAGTCATGCAGCCTG 59.760 55.000 0.00 0.00 0.00 4.85
55 56 8.839310 AACATGGTGCAGATAATATACTTCTC 57.161 34.615 0.00 0.00 0.00 2.87
97 98 2.801699 CGCTCATAATCGCCACACCTAA 60.802 50.000 0.00 0.00 0.00 2.69
112 113 2.772176 CTATCGTCGCGCTCGCTCAT 62.772 60.000 16.13 9.12 39.32 2.90
148 149 9.303116 CTATATGTTTATATCCTCCGCCTCTAT 57.697 37.037 0.00 0.00 31.97 1.98
176 177 5.633830 ATGTTGGATGATCTGTTGTGTTC 57.366 39.130 0.00 0.00 0.00 3.18
185 186 6.153851 TCAAATCTTGCAATGTTGGATGATCT 59.846 34.615 13.32 1.16 40.65 2.75
242 243 7.361457 GCGCCTACCACTAAAAGAAAATTTAGA 60.361 37.037 12.36 0.00 42.77 2.10
244 245 6.431852 AGCGCCTACCACTAAAAGAAAATTTA 59.568 34.615 2.29 0.00 0.00 1.40
248 249 3.746940 AGCGCCTACCACTAAAAGAAAA 58.253 40.909 2.29 0.00 0.00 2.29
273 274 8.378172 TCACACTCTGACTTTTTATTAACTGG 57.622 34.615 0.00 0.00 0.00 4.00
275 276 9.778741 TCATCACACTCTGACTTTTTATTAACT 57.221 29.630 0.00 0.00 0.00 2.24
302 308 8.024285 AGTCGGCGTTTATTAAAATTGATGAAA 58.976 29.630 6.85 0.00 0.00 2.69
312 318 6.542574 TGAAAAGAGTCGGCGTTTATTAAA 57.457 33.333 6.85 0.00 0.00 1.52
314 320 5.870433 TCATGAAAAGAGTCGGCGTTTATTA 59.130 36.000 6.85 0.00 0.00 0.98
346 353 2.093306 TTCACGTGCACCCTATTCAG 57.907 50.000 11.67 0.00 0.00 3.02
349 356 4.415881 TCATATTCACGTGCACCCTATT 57.584 40.909 11.67 0.00 0.00 1.73
358 365 4.209911 AGACGCATCATTCATATTCACGTG 59.790 41.667 9.94 9.94 0.00 4.49
359 366 4.371786 AGACGCATCATTCATATTCACGT 58.628 39.130 0.00 0.00 0.00 4.49
364 371 7.157347 ACTCACATAGACGCATCATTCATATT 58.843 34.615 0.00 0.00 0.00 1.28
419 3021 9.605275 CTATTTGTCAATCTCTATCAAGTTGGA 57.395 33.333 2.34 0.00 0.00 3.53
429 3031 8.603898 TTGTACTCCCTATTTGTCAATCTCTA 57.396 34.615 0.00 0.00 0.00 2.43
431 3033 6.258947 GCTTGTACTCCCTATTTGTCAATCTC 59.741 42.308 0.00 0.00 0.00 2.75
451 3053 0.976641 TCTCGTCCAATCCTGCTTGT 59.023 50.000 0.00 0.00 0.00 3.16
452 3054 1.066573 AGTCTCGTCCAATCCTGCTTG 60.067 52.381 0.00 0.00 0.00 4.01
453 3055 1.066573 CAGTCTCGTCCAATCCTGCTT 60.067 52.381 0.00 0.00 0.00 3.91
471 3073 0.465097 CCCTACAGGCTGCAATCCAG 60.465 60.000 15.89 2.37 44.67 3.86
486 3687 4.853276 TCTTTTCAAATCCCCACTACCCTA 59.147 41.667 0.00 0.00 0.00 3.53
491 3692 5.010617 GCAAACTCTTTTCAAATCCCCACTA 59.989 40.000 0.00 0.00 0.00 2.74
492 3693 4.202253 GCAAACTCTTTTCAAATCCCCACT 60.202 41.667 0.00 0.00 0.00 4.00
514 3716 0.950116 AGACACAAAGAGCAGCAAGC 59.050 50.000 0.00 0.00 46.19 4.01
515 3717 3.126514 CCATAGACACAAAGAGCAGCAAG 59.873 47.826 0.00 0.00 0.00 4.01
521 3723 1.009829 CCGCCATAGACACAAAGAGC 58.990 55.000 0.00 0.00 0.00 4.09
573 3775 7.661437 TCCTAAGATAACATCATTGTACATGCC 59.339 37.037 0.00 0.00 34.06 4.40
574 3776 8.607441 TCCTAAGATAACATCATTGTACATGC 57.393 34.615 0.00 0.00 34.06 4.06
575 3777 9.770097 ACTCCTAAGATAACATCATTGTACATG 57.230 33.333 0.00 0.00 34.06 3.21
576 3778 9.770097 CACTCCTAAGATAACATCATTGTACAT 57.230 33.333 0.00 0.00 34.06 2.29
577 3779 7.710907 GCACTCCTAAGATAACATCATTGTACA 59.289 37.037 0.00 0.00 34.06 2.90
578 3780 7.171678 GGCACTCCTAAGATAACATCATTGTAC 59.828 40.741 0.00 0.00 34.06 2.90
579 3781 7.147567 TGGCACTCCTAAGATAACATCATTGTA 60.148 37.037 0.00 0.00 34.06 2.41
580 3782 6.058183 GGCACTCCTAAGATAACATCATTGT 58.942 40.000 0.00 0.00 37.82 2.71
581 3783 6.017605 GTGGCACTCCTAAGATAACATCATTG 60.018 42.308 11.13 0.00 0.00 2.82
582 3784 6.058183 GTGGCACTCCTAAGATAACATCATT 58.942 40.000 11.13 0.00 0.00 2.57
583 3785 5.615289 GTGGCACTCCTAAGATAACATCAT 58.385 41.667 11.13 0.00 0.00 2.45
584 3786 4.441495 CGTGGCACTCCTAAGATAACATCA 60.441 45.833 16.72 0.00 0.00 3.07
585 3787 4.051922 CGTGGCACTCCTAAGATAACATC 58.948 47.826 16.72 0.00 0.00 3.06
586 3788 3.451178 ACGTGGCACTCCTAAGATAACAT 59.549 43.478 16.72 0.00 0.00 2.71
587 3789 2.829720 ACGTGGCACTCCTAAGATAACA 59.170 45.455 16.72 0.00 0.00 2.41
588 3790 3.521947 ACGTGGCACTCCTAAGATAAC 57.478 47.619 16.72 0.00 0.00 1.89
589 3791 4.529897 TCTACGTGGCACTCCTAAGATAA 58.470 43.478 16.72 0.00 0.00 1.75
590 3792 4.160642 TCTACGTGGCACTCCTAAGATA 57.839 45.455 16.72 0.00 0.00 1.98
591 3793 3.014304 TCTACGTGGCACTCCTAAGAT 57.986 47.619 16.72 0.00 0.00 2.40
592 3794 2.502142 TCTACGTGGCACTCCTAAGA 57.498 50.000 16.72 7.94 0.00 2.10
593 3795 3.802948 ATTCTACGTGGCACTCCTAAG 57.197 47.619 16.72 5.74 0.00 2.18
594 3796 5.664294 TTTATTCTACGTGGCACTCCTAA 57.336 39.130 16.72 5.50 0.00 2.69
595 3797 5.361571 TCATTTATTCTACGTGGCACTCCTA 59.638 40.000 16.72 1.46 0.00 2.94
596 3798 4.161565 TCATTTATTCTACGTGGCACTCCT 59.838 41.667 16.72 0.21 0.00 3.69
597 3799 4.439057 TCATTTATTCTACGTGGCACTCC 58.561 43.478 16.72 0.00 0.00 3.85
598 3800 5.753438 TCATCATTTATTCTACGTGGCACTC 59.247 40.000 16.72 0.00 0.00 3.51
599 3801 5.670485 TCATCATTTATTCTACGTGGCACT 58.330 37.500 16.72 5.47 0.00 4.40
600 3802 5.050091 CCTCATCATTTATTCTACGTGGCAC 60.050 44.000 7.79 7.79 0.00 5.01
601 3803 5.056480 CCTCATCATTTATTCTACGTGGCA 58.944 41.667 0.00 0.00 0.00 4.92
602 3804 5.050091 CACCTCATCATTTATTCTACGTGGC 60.050 44.000 0.00 0.00 0.00 5.01
603 3805 5.466728 CCACCTCATCATTTATTCTACGTGG 59.533 44.000 0.00 0.00 0.00 4.94
604 3806 6.280643 TCCACCTCATCATTTATTCTACGTG 58.719 40.000 0.00 0.00 0.00 4.49
605 3807 6.463049 CCTCCACCTCATCATTTATTCTACGT 60.463 42.308 0.00 0.00 0.00 3.57
606 3808 5.928839 CCTCCACCTCATCATTTATTCTACG 59.071 44.000 0.00 0.00 0.00 3.51
607 3809 7.015682 TCTCCTCCACCTCATCATTTATTCTAC 59.984 40.741 0.00 0.00 0.00 2.59
608 3810 7.075797 TCTCCTCCACCTCATCATTTATTCTA 58.924 38.462 0.00 0.00 0.00 2.10
609 3811 5.907662 TCTCCTCCACCTCATCATTTATTCT 59.092 40.000 0.00 0.00 0.00 2.40
610 3812 6.042552 TCTCTCCTCCACCTCATCATTTATTC 59.957 42.308 0.00 0.00 0.00 1.75
611 3813 5.907662 TCTCTCCTCCACCTCATCATTTATT 59.092 40.000 0.00 0.00 0.00 1.40
612 3814 5.471424 TCTCTCCTCCACCTCATCATTTAT 58.529 41.667 0.00 0.00 0.00 1.40
613 3815 4.883759 TCTCTCCTCCACCTCATCATTTA 58.116 43.478 0.00 0.00 0.00 1.40
614 3816 3.710677 CTCTCTCCTCCACCTCATCATTT 59.289 47.826 0.00 0.00 0.00 2.32
615 3817 3.052262 TCTCTCTCCTCCACCTCATCATT 60.052 47.826 0.00 0.00 0.00 2.57
616 3818 2.517553 TCTCTCTCCTCCACCTCATCAT 59.482 50.000 0.00 0.00 0.00 2.45
617 3819 1.925959 TCTCTCTCCTCCACCTCATCA 59.074 52.381 0.00 0.00 0.00 3.07
618 3820 2.693074 GTTCTCTCTCCTCCACCTCATC 59.307 54.545 0.00 0.00 0.00 2.92
619 3821 2.314549 AGTTCTCTCTCCTCCACCTCAT 59.685 50.000 0.00 0.00 0.00 2.90
620 3822 1.713647 AGTTCTCTCTCCTCCACCTCA 59.286 52.381 0.00 0.00 0.00 3.86
621 3823 2.291282 TGAGTTCTCTCTCCTCCACCTC 60.291 54.545 1.53 0.00 40.98 3.85
622 3824 1.713647 TGAGTTCTCTCTCCTCCACCT 59.286 52.381 1.53 0.00 40.98 4.00
623 3825 2.223803 TGAGTTCTCTCTCCTCCACC 57.776 55.000 1.53 0.00 40.98 4.61
624 3826 5.197451 TCTTATGAGTTCTCTCTCCTCCAC 58.803 45.833 1.53 0.00 40.98 4.02
625 3827 5.458451 TCTTATGAGTTCTCTCTCCTCCA 57.542 43.478 1.53 0.00 40.98 3.86
626 3828 6.783708 TTTCTTATGAGTTCTCTCTCCTCC 57.216 41.667 1.53 0.00 40.98 4.30
627 3829 7.264947 CCTTTTCTTATGAGTTCTCTCTCCTC 58.735 42.308 1.53 0.00 40.98 3.71
628 3830 6.351796 GCCTTTTCTTATGAGTTCTCTCTCCT 60.352 42.308 1.53 0.00 40.98 3.69
629 3831 5.815222 GCCTTTTCTTATGAGTTCTCTCTCC 59.185 44.000 1.53 0.00 40.98 3.71
630 3832 6.639563 AGCCTTTTCTTATGAGTTCTCTCTC 58.360 40.000 1.53 0.00 40.98 3.20
631 3833 6.619329 AGCCTTTTCTTATGAGTTCTCTCT 57.381 37.500 1.53 0.00 40.98 3.10
632 3834 6.652900 ACAAGCCTTTTCTTATGAGTTCTCTC 59.347 38.462 1.53 0.00 40.79 3.20
633 3835 6.538263 ACAAGCCTTTTCTTATGAGTTCTCT 58.462 36.000 1.53 0.00 0.00 3.10
634 3836 6.652900 AGACAAGCCTTTTCTTATGAGTTCTC 59.347 38.462 0.00 0.00 0.00 2.87
635 3837 6.538263 AGACAAGCCTTTTCTTATGAGTTCT 58.462 36.000 0.00 0.00 0.00 3.01
636 3838 6.809630 AGACAAGCCTTTTCTTATGAGTTC 57.190 37.500 0.00 0.00 0.00 3.01
637 3839 7.001073 AGAAGACAAGCCTTTTCTTATGAGTT 58.999 34.615 5.86 0.00 29.54 3.01
638 3840 6.538263 AGAAGACAAGCCTTTTCTTATGAGT 58.462 36.000 5.86 0.00 29.54 3.41
639 3841 6.878389 AGAGAAGACAAGCCTTTTCTTATGAG 59.122 38.462 5.29 0.00 35.01 2.90
640 3842 6.773638 AGAGAAGACAAGCCTTTTCTTATGA 58.226 36.000 5.29 0.00 35.01 2.15
641 3843 7.446001 AAGAGAAGACAAGCCTTTTCTTATG 57.554 36.000 5.29 0.00 42.29 1.90
643 3845 9.574516 AAATAAGAGAAGACAAGCCTTTTCTTA 57.425 29.630 5.86 14.67 45.53 2.10
644 3846 8.470657 AAATAAGAGAAGACAAGCCTTTTCTT 57.529 30.769 5.57 5.57 44.56 2.52
645 3847 9.574516 TTAAATAAGAGAAGACAAGCCTTTTCT 57.425 29.630 0.00 0.00 38.69 2.52
646 3848 9.833182 CTTAAATAAGAGAAGACAAGCCTTTTC 57.167 33.333 0.00 0.00 35.33 2.29
647 3849 9.574516 TCTTAAATAAGAGAAGACAAGCCTTTT 57.425 29.630 0.00 0.00 37.40 2.27
648 3850 9.746457 ATCTTAAATAAGAGAAGACAAGCCTTT 57.254 29.630 8.68 0.00 44.67 3.11
682 3884 7.495279 AGACAAATTGTGCTAAGAGATCATCTC 59.505 37.037 6.55 6.55 43.70 2.75
683 3885 7.337167 AGACAAATTGTGCTAAGAGATCATCT 58.663 34.615 2.20 0.00 41.27 2.90
684 3886 7.279536 TGAGACAAATTGTGCTAAGAGATCATC 59.720 37.037 2.20 0.00 0.00 2.92
685 3887 7.065563 GTGAGACAAATTGTGCTAAGAGATCAT 59.934 37.037 2.20 0.00 0.00 2.45
686 3888 6.369890 GTGAGACAAATTGTGCTAAGAGATCA 59.630 38.462 2.20 0.00 0.00 2.92
687 3889 6.183360 GGTGAGACAAATTGTGCTAAGAGATC 60.183 42.308 2.20 0.00 0.00 2.75
688 3890 5.645497 GGTGAGACAAATTGTGCTAAGAGAT 59.355 40.000 2.20 0.00 0.00 2.75
689 3891 4.997395 GGTGAGACAAATTGTGCTAAGAGA 59.003 41.667 2.20 0.00 0.00 3.10
690 3892 4.756642 TGGTGAGACAAATTGTGCTAAGAG 59.243 41.667 2.20 0.00 0.00 2.85
691 3893 4.713553 TGGTGAGACAAATTGTGCTAAGA 58.286 39.130 2.20 0.00 0.00 2.10
692 3894 5.048504 ACATGGTGAGACAAATTGTGCTAAG 60.049 40.000 2.20 0.00 0.00 2.18
693 3895 4.826733 ACATGGTGAGACAAATTGTGCTAA 59.173 37.500 2.20 0.00 0.00 3.09
694 3896 4.397420 ACATGGTGAGACAAATTGTGCTA 58.603 39.130 2.20 0.00 0.00 3.49
695 3897 3.225104 ACATGGTGAGACAAATTGTGCT 58.775 40.909 2.20 0.36 0.00 4.40
696 3898 3.648339 ACATGGTGAGACAAATTGTGC 57.352 42.857 2.20 0.00 0.00 4.57
697 3899 7.169645 CCTTAAAACATGGTGAGACAAATTGTG 59.830 37.037 2.20 0.00 0.00 3.33
698 3900 7.069331 TCCTTAAAACATGGTGAGACAAATTGT 59.931 33.333 0.00 0.00 0.00 2.71
699 3901 7.432869 TCCTTAAAACATGGTGAGACAAATTG 58.567 34.615 0.00 0.00 0.00 2.32
700 3902 7.595819 TCCTTAAAACATGGTGAGACAAATT 57.404 32.000 0.00 0.00 0.00 1.82
701 3903 7.595819 TTCCTTAAAACATGGTGAGACAAAT 57.404 32.000 0.00 0.00 0.00 2.32
702 3904 7.595819 ATTCCTTAAAACATGGTGAGACAAA 57.404 32.000 0.00 0.00 0.00 2.83
703 3905 7.432869 CAATTCCTTAAAACATGGTGAGACAA 58.567 34.615 0.00 0.00 0.00 3.18
704 3906 6.516527 GCAATTCCTTAAAACATGGTGAGACA 60.517 38.462 0.00 0.00 0.00 3.41
705 3907 5.863935 GCAATTCCTTAAAACATGGTGAGAC 59.136 40.000 0.00 0.00 0.00 3.36
706 3908 5.774690 AGCAATTCCTTAAAACATGGTGAGA 59.225 36.000 0.00 0.00 0.00 3.27
707 3909 6.029346 AGCAATTCCTTAAAACATGGTGAG 57.971 37.500 0.00 0.00 0.00 3.51
708 3910 6.719370 ACTAGCAATTCCTTAAAACATGGTGA 59.281 34.615 0.00 0.00 0.00 4.02
709 3911 6.924111 ACTAGCAATTCCTTAAAACATGGTG 58.076 36.000 0.00 0.00 0.00 4.17
710 3912 7.539034 AACTAGCAATTCCTTAAAACATGGT 57.461 32.000 0.00 0.00 0.00 3.55
721 3923 9.566432 CCTTATCTTCAATAACTAGCAATTCCT 57.434 33.333 0.00 0.00 0.00 3.36
722 3924 8.293157 GCCTTATCTTCAATAACTAGCAATTCC 58.707 37.037 0.00 0.00 0.00 3.01
723 3925 9.061435 AGCCTTATCTTCAATAACTAGCAATTC 57.939 33.333 0.00 0.00 0.00 2.17
724 3926 8.986929 AGCCTTATCTTCAATAACTAGCAATT 57.013 30.769 0.00 0.00 0.00 2.32
726 3928 9.547753 CTTAGCCTTATCTTCAATAACTAGCAA 57.452 33.333 0.00 0.00 0.00 3.91
727 3929 8.924303 TCTTAGCCTTATCTTCAATAACTAGCA 58.076 33.333 0.00 0.00 0.00 3.49
728 3930 9.936759 ATCTTAGCCTTATCTTCAATAACTAGC 57.063 33.333 0.00 0.00 0.00 3.42
744 3946 9.726438 GTGTACAATGGATTATATCTTAGCCTT 57.274 33.333 0.00 0.00 0.00 4.35
745 3947 8.880244 TGTGTACAATGGATTATATCTTAGCCT 58.120 33.333 0.00 0.00 0.00 4.58
746 3948 9.672673 ATGTGTACAATGGATTATATCTTAGCC 57.327 33.333 0.00 0.00 0.00 3.93
758 3960 9.241919 TGACAAAAGAATATGTGTACAATGGAT 57.758 29.630 0.00 0.00 0.00 3.41
759 3961 8.628630 TGACAAAAGAATATGTGTACAATGGA 57.371 30.769 0.00 0.00 0.00 3.41
760 3962 9.507280 GATGACAAAAGAATATGTGTACAATGG 57.493 33.333 0.00 0.00 0.00 3.16
763 3965 9.725019 AGAGATGACAAAAGAATATGTGTACAA 57.275 29.630 0.00 0.00 0.00 2.41
775 3977 9.230122 TGCATGTAATTTAGAGATGACAAAAGA 57.770 29.630 0.00 0.00 0.00 2.52
776 3978 9.844790 TTGCATGTAATTTAGAGATGACAAAAG 57.155 29.630 0.00 0.00 0.00 2.27
777 3979 9.844790 CTTGCATGTAATTTAGAGATGACAAAA 57.155 29.630 0.00 0.00 0.00 2.44
778 3980 9.230122 TCTTGCATGTAATTTAGAGATGACAAA 57.770 29.630 0.00 0.00 0.00 2.83
779 3981 8.668353 GTCTTGCATGTAATTTAGAGATGACAA 58.332 33.333 0.00 0.00 0.00 3.18
780 3982 8.043113 AGTCTTGCATGTAATTTAGAGATGACA 58.957 33.333 0.00 0.00 0.00 3.58
781 3983 8.430801 AGTCTTGCATGTAATTTAGAGATGAC 57.569 34.615 0.00 0.00 0.00 3.06
793 3995 9.371136 CAGTCTTATCTTAAGTCTTGCATGTAA 57.629 33.333 1.63 0.00 0.00 2.41
794 3996 8.531982 ACAGTCTTATCTTAAGTCTTGCATGTA 58.468 33.333 1.63 0.00 0.00 2.29
795 3997 7.390027 ACAGTCTTATCTTAAGTCTTGCATGT 58.610 34.615 1.63 0.00 0.00 3.21
796 3998 7.763528 AGACAGTCTTATCTTAAGTCTTGCATG 59.236 37.037 0.00 0.00 31.38 4.06
797 3999 7.846066 AGACAGTCTTATCTTAAGTCTTGCAT 58.154 34.615 0.00 0.00 31.38 3.96
798 4000 7.233389 AGACAGTCTTATCTTAAGTCTTGCA 57.767 36.000 0.00 0.00 31.38 4.08
799 4001 9.810545 ATAAGACAGTCTTATCTTAAGTCTTGC 57.189 33.333 24.76 0.00 44.03 4.01
812 4014 8.590204 TGTACAATGGTTGATAAGACAGTCTTA 58.410 33.333 22.68 22.68 42.49 2.10
813 4015 7.450074 TGTACAATGGTTGATAAGACAGTCTT 58.550 34.615 19.81 19.81 40.35 3.01
814 4016 7.004555 TGTACAATGGTTGATAAGACAGTCT 57.995 36.000 0.00 0.00 0.00 3.24
815 4017 7.677276 GCATGTACAATGGTTGATAAGACAGTC 60.677 40.741 0.00 0.00 0.00 3.51
816 4018 6.094048 GCATGTACAATGGTTGATAAGACAGT 59.906 38.462 0.00 0.00 0.00 3.55
817 4019 6.458751 GGCATGTACAATGGTTGATAAGACAG 60.459 42.308 0.00 0.00 0.00 3.51
818 4020 5.356751 GGCATGTACAATGGTTGATAAGACA 59.643 40.000 0.00 0.00 0.00 3.41
819 4021 5.221048 GGGCATGTACAATGGTTGATAAGAC 60.221 44.000 0.00 0.00 0.00 3.01
820 4022 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
821 4023 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
822 4024 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
823 4025 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
824 4026 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
825 4027 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
826 4028 4.096382 GTCTTAGGGCATGTACAATGGTTG 59.904 45.833 0.00 0.00 0.00 3.77
827 4029 4.263727 TGTCTTAGGGCATGTACAATGGTT 60.264 41.667 0.00 0.00 0.00 3.67
828 4030 3.265737 TGTCTTAGGGCATGTACAATGGT 59.734 43.478 0.00 0.00 0.00 3.55
829 4031 3.884895 TGTCTTAGGGCATGTACAATGG 58.115 45.455 0.00 0.00 0.00 3.16
830 4032 5.371526 AGATGTCTTAGGGCATGTACAATG 58.628 41.667 0.00 0.12 0.00 2.82
831 4033 5.636903 AGATGTCTTAGGGCATGTACAAT 57.363 39.130 0.00 0.00 0.00 2.71
832 4034 5.163343 GGTAGATGTCTTAGGGCATGTACAA 60.163 44.000 22.61 0.00 41.04 2.41
833 4035 4.344102 GGTAGATGTCTTAGGGCATGTACA 59.656 45.833 22.61 0.00 41.04 2.90
834 4036 4.344102 TGGTAGATGTCTTAGGGCATGTAC 59.656 45.833 15.78 15.78 39.57 2.90
835 4037 4.552674 TGGTAGATGTCTTAGGGCATGTA 58.447 43.478 0.00 0.00 0.00 2.29
836 4038 3.384168 TGGTAGATGTCTTAGGGCATGT 58.616 45.455 0.00 0.00 0.00 3.21
837 4039 4.422073 TTGGTAGATGTCTTAGGGCATG 57.578 45.455 0.00 0.00 0.00 4.06
838 4040 5.653255 ATTTGGTAGATGTCTTAGGGCAT 57.347 39.130 0.00 0.00 0.00 4.40
839 4041 5.192927 CAATTTGGTAGATGTCTTAGGGCA 58.807 41.667 0.00 0.00 0.00 5.36
840 4042 5.193679 ACAATTTGGTAGATGTCTTAGGGC 58.806 41.667 0.78 0.00 0.00 5.19
841 4043 7.703058 AAACAATTTGGTAGATGTCTTAGGG 57.297 36.000 0.78 0.00 0.00 3.53
913 4116 1.383525 GGTGGGGACGATAAGGGGA 60.384 63.158 0.00 0.00 0.00 4.81
942 4145 5.050295 GGAGAAGTACAACAAGTTTTCGAGG 60.050 44.000 0.00 0.00 31.63 4.63
946 4149 6.363473 CGATGGAGAAGTACAACAAGTTTTC 58.637 40.000 0.00 0.00 0.00 2.29
981 4184 2.038837 GGCGGTTCCTTTCTTCCCG 61.039 63.158 0.00 0.00 41.50 5.14
982 4185 0.323451 ATGGCGGTTCCTTTCTTCCC 60.323 55.000 0.00 0.00 35.26 3.97
1142 4345 1.801309 CGGAGAGGAGGGCGAGAATC 61.801 65.000 0.00 0.00 0.00 2.52
1166 4369 8.082852 GGCGATGGTATATATTAGAATCGACAT 58.917 37.037 17.09 0.00 42.27 3.06
1301 4504 4.838152 TGAAGGCGGCGATCTGGC 62.838 66.667 12.98 4.13 43.87 4.85
1329 4532 0.467384 CCTCTCGTGGCCTGATTCAT 59.533 55.000 3.32 0.00 0.00 2.57
1401 4604 4.489771 ATTCCGCGGAGGGCTTGG 62.490 66.667 29.20 0.00 41.52 3.61
1402 4605 3.204827 CATTCCGCGGAGGGCTTG 61.205 66.667 29.20 17.16 41.52 4.01
1432 4635 4.864334 GTGCTGGAGGCCCCGATG 62.864 72.222 0.00 0.00 40.92 3.84
1630 4833 7.269084 CAGGCTAAATCAATCAATAATAACGCG 59.731 37.037 3.53 3.53 0.00 6.01
1667 4870 5.105351 TGAAAGAGGTCGAGCAATCTCATTA 60.105 40.000 18.15 0.00 39.30 1.90
1669 4872 3.196469 TGAAAGAGGTCGAGCAATCTCAT 59.804 43.478 18.15 4.82 39.30 2.90
1670 4873 2.562738 TGAAAGAGGTCGAGCAATCTCA 59.437 45.455 18.15 10.88 39.30 3.27
1671 4874 3.238108 TGAAAGAGGTCGAGCAATCTC 57.762 47.619 18.15 5.41 35.99 2.75
1672 4875 3.902881 ATGAAAGAGGTCGAGCAATCT 57.097 42.857 18.15 8.99 0.00 2.40
1673 4876 4.505922 CACTATGAAAGAGGTCGAGCAATC 59.494 45.833 18.15 6.57 0.00 2.67
1707 4910 9.474920 TTTAACCTAATCAATCAAGCAAACAAG 57.525 29.630 0.00 0.00 0.00 3.16
1733 4936 8.606830 GGATCCTCAACTAATTTGGGACTATAT 58.393 37.037 3.84 0.00 38.03 0.86
1821 5029 0.179020 TCGAAGCAAGGGGGCATATG 60.179 55.000 0.00 0.00 35.83 1.78
1831 5039 0.457337 GGCTGGCAATTCGAAGCAAG 60.457 55.000 8.98 8.98 37.40 4.01
1887 5095 1.714899 CCCATCCGAAATCGCACCAC 61.715 60.000 0.00 0.00 38.18 4.16
2030 5238 5.806654 ACAATAAAAGGATGCACCAACTT 57.193 34.783 7.86 0.00 42.04 2.66
2142 5350 5.415701 GTCCTAAACATGAGAAATTCTGGCA 59.584 40.000 0.00 0.00 0.00 4.92
2170 5378 7.328493 TCGTAATCACAAACTACTGACTCATTG 59.672 37.037 0.00 0.00 0.00 2.82
2173 5381 6.206048 TCTCGTAATCACAAACTACTGACTCA 59.794 38.462 0.00 0.00 0.00 3.41
2209 5417 9.601217 GCTAGGAGAACTAAAAAGATTACATCA 57.399 33.333 0.00 0.00 0.00 3.07
2240 5448 5.824904 ACCAACATGCTAATTTGCTAGAG 57.175 39.130 12.99 3.34 0.00 2.43
2351 5559 0.039256 CACCACCAATGCAAAGGACG 60.039 55.000 14.09 6.17 0.00 4.79
2539 5748 3.062234 GGTGCAGTGAACGAGTATTAAGC 59.938 47.826 0.00 0.00 0.00 3.09
2574 5783 1.745232 AAGTTCCTGACGTGCACAAA 58.255 45.000 18.64 0.00 0.00 2.83
2768 5978 1.284408 GAGCGAGTATGCGAGGAGG 59.716 63.158 0.00 0.00 40.67 4.30
2769 5979 1.169661 AGGAGCGAGTATGCGAGGAG 61.170 60.000 0.00 0.00 40.67 3.69
2935 6145 9.520204 CCAGCAATTTCACTACCAAAATATTAG 57.480 33.333 0.00 0.00 0.00 1.73
3034 6244 5.185828 ACATGCAAAAGGGAGAAAAGATACC 59.814 40.000 0.00 0.00 0.00 2.73
3237 6447 5.847304 TGTGATTCATCTGCCTGTATCTAC 58.153 41.667 0.00 0.00 0.00 2.59
3329 6539 6.594547 CCACCTACATCATCTTCATGATCATC 59.405 42.308 4.86 0.00 45.26 2.92
3330 6540 6.473758 CCACCTACATCATCTTCATGATCAT 58.526 40.000 1.18 1.18 45.26 2.45
3331 6541 5.744007 GCCACCTACATCATCTTCATGATCA 60.744 44.000 0.00 0.00 45.26 2.92
3332 6542 4.694509 GCCACCTACATCATCTTCATGATC 59.305 45.833 0.00 0.00 45.26 2.92
3334 6544 3.455543 TGCCACCTACATCATCTTCATGA 59.544 43.478 0.00 0.00 43.45 3.07
3335 6545 3.812262 TGCCACCTACATCATCTTCATG 58.188 45.455 0.00 0.00 0.00 3.07
3336 6546 4.350225 AGATGCCACCTACATCATCTTCAT 59.650 41.667 6.53 0.00 45.19 2.57
3337 6547 3.713248 AGATGCCACCTACATCATCTTCA 59.287 43.478 6.53 0.00 45.19 3.02
3338 6548 4.202295 TGAGATGCCACCTACATCATCTTC 60.202 45.833 6.53 0.00 45.19 2.87
3339 6549 3.713248 TGAGATGCCACCTACATCATCTT 59.287 43.478 6.53 0.00 45.19 2.40
3340 6550 3.311990 TGAGATGCCACCTACATCATCT 58.688 45.455 6.53 3.55 45.19 2.90
3341 6551 3.323115 TCTGAGATGCCACCTACATCATC 59.677 47.826 6.53 0.00 45.19 2.92
3342 6552 3.070734 GTCTGAGATGCCACCTACATCAT 59.929 47.826 6.53 0.00 45.19 2.45
3343 6553 2.432146 GTCTGAGATGCCACCTACATCA 59.568 50.000 6.53 0.00 45.19 3.07
3344 6554 2.544694 CGTCTGAGATGCCACCTACATC 60.545 54.545 0.00 0.00 43.49 3.06
3345 6555 1.410517 CGTCTGAGATGCCACCTACAT 59.589 52.381 0.00 0.00 0.00 2.29
3346 6556 0.817654 CGTCTGAGATGCCACCTACA 59.182 55.000 0.00 0.00 0.00 2.74
3347 6557 1.103803 TCGTCTGAGATGCCACCTAC 58.896 55.000 0.00 0.00 0.00 3.18
3348 6558 1.683385 CATCGTCTGAGATGCCACCTA 59.317 52.381 0.00 0.00 41.09 3.08
3349 6559 0.463204 CATCGTCTGAGATGCCACCT 59.537 55.000 0.00 0.00 41.09 4.00
3350 6560 0.461548 TCATCGTCTGAGATGCCACC 59.538 55.000 0.00 0.00 45.57 4.61
3351 6561 2.223900 TGATCATCGTCTGAGATGCCAC 60.224 50.000 0.00 6.63 45.57 5.01
3352 6562 2.034124 TGATCATCGTCTGAGATGCCA 58.966 47.619 0.00 8.69 45.57 4.92
3353 6563 2.808523 TGATCATCGTCTGAGATGCC 57.191 50.000 0.00 7.03 45.57 4.40
3354 6564 3.910648 TCATGATCATCGTCTGAGATGC 58.089 45.455 4.86 0.00 45.57 3.91
3355 6565 4.217983 TCCTCATGATCATCGTCTGAGATG 59.782 45.833 20.09 8.36 46.90 2.90
3356 6566 4.405548 TCCTCATGATCATCGTCTGAGAT 58.594 43.478 20.09 0.00 37.28 2.75
3357 6567 3.825328 TCCTCATGATCATCGTCTGAGA 58.175 45.455 20.09 7.05 37.28 3.27
3358 6568 4.217983 TCATCCTCATGATCATCGTCTGAG 59.782 45.833 13.94 13.94 37.28 3.35
3359 6569 4.147321 TCATCCTCATGATCATCGTCTGA 58.853 43.478 4.86 0.08 33.80 3.27
3360 6570 4.516365 TCATCCTCATGATCATCGTCTG 57.484 45.455 4.86 0.00 33.80 3.51
3361 6571 4.527427 ACATCATCCTCATGATCATCGTCT 59.473 41.667 4.86 0.00 45.26 4.18
3362 6572 4.818642 ACATCATCCTCATGATCATCGTC 58.181 43.478 4.86 0.00 45.26 4.20
3363 6573 4.886496 ACATCATCCTCATGATCATCGT 57.114 40.909 4.86 0.00 45.26 3.73
3364 6574 5.105432 ACCTACATCATCCTCATGATCATCG 60.105 44.000 4.86 2.07 45.26 3.84
3527 6773 2.041350 AGGTCCTCTAGGTTCGAGAACA 59.959 50.000 16.56 0.00 42.85 3.18
3649 6896 4.229906 CGCAAACGGCATTTATTTGAAG 57.770 40.909 0.30 0.00 45.17 3.02
3746 7010 2.029739 TGCAACTCCACGACGATTAGAA 60.030 45.455 0.00 0.00 0.00 2.10
3814 7079 4.893524 GGTAATCCCCAAAGGTTCCATAAG 59.106 45.833 0.00 0.00 36.75 1.73
3817 7082 2.357777 CGGTAATCCCCAAAGGTTCCAT 60.358 50.000 0.00 0.00 36.75 3.41
3829 7094 1.225426 GGTTCCACCCGGTAATCCC 59.775 63.158 0.00 0.00 30.04 3.85
3833 7098 1.003812 CATCAAGGTTCCACCCGGTAA 59.996 52.381 0.00 0.00 39.75 2.85
3854 7119 1.228094 TCTTGCGGCCACATCAACA 60.228 52.632 2.24 0.00 0.00 3.33
3855 7120 1.210155 GTCTTGCGGCCACATCAAC 59.790 57.895 2.24 0.00 0.00 3.18
3892 7157 3.890756 GTGATTGATGGCATAATGACCCA 59.109 43.478 0.00 0.00 0.00 4.51
3894 7159 3.890756 TGGTGATTGATGGCATAATGACC 59.109 43.478 20.44 20.44 39.87 4.02
3936 7201 8.879342 AAATCCAATCTATAGTCTCGTTCAAG 57.121 34.615 0.00 0.00 0.00 3.02
4055 7320 2.264813 GCCATGTTGACATTCACATGC 58.735 47.619 11.65 5.70 36.01 4.06
4115 7380 7.764901 GGTTCATACTCGGATAAAAGGATATCC 59.235 40.741 14.41 14.41 45.30 2.59
4130 7395 2.893637 CACTTCCCTGGTTCATACTCG 58.106 52.381 0.00 0.00 0.00 4.18
4370 7943 2.033448 AAATGTTCGGCGGCCAGA 59.967 55.556 20.71 14.21 0.00 3.86
4434 8007 5.626142 TGGTTAAACTATGCCTGAAGAACA 58.374 37.500 0.00 0.00 0.00 3.18
4452 8025 9.716531 CTGAAATGCTAATGATATCTCTGGTTA 57.283 33.333 3.98 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.