Multiple sequence alignment - TraesCS6A01G151800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G151800 chr6A 100.000 2249 0 0 1 2249 135560343 135562591 0.000000e+00 4154.0
1 TraesCS6A01G151800 chr6A 89.904 208 20 1 667 873 492283912 492284119 1.320000e-67 267.0
2 TraesCS6A01G151800 chr6B 88.597 2245 117 56 54 2248 200007805 200009960 0.000000e+00 2599.0
3 TraesCS6A01G151800 chr6B 89.756 205 21 0 669 873 528285888 528286092 1.710000e-66 263.0
4 TraesCS6A01G151800 chr6B 97.297 37 1 0 10 46 200007785 200007821 1.860000e-06 63.9
5 TraesCS6A01G151800 chr6D 87.849 1432 71 43 57 1443 111061263 111062636 0.000000e+00 1585.0
6 TraesCS6A01G151800 chr6D 91.884 727 31 17 1536 2248 111062672 111063384 0.000000e+00 990.0
7 TraesCS6A01G151800 chr6D 88.785 214 23 1 661 873 351137583 351137370 6.160000e-66 261.0
8 TraesCS6A01G151800 chr7D 91.111 360 30 2 968 1326 593370339 593369981 9.340000e-134 486.0
9 TraesCS6A01G151800 chr7D 92.661 218 16 0 668 885 593371078 593370861 4.660000e-82 315.0
10 TraesCS6A01G151800 chr7B 90.833 360 31 2 968 1326 667479575 667479933 4.340000e-132 481.0
11 TraesCS6A01G151800 chr7B 93.689 206 13 0 668 873 667478751 667478956 2.170000e-80 309.0
12 TraesCS6A01G151800 chr7A 89.972 359 36 0 968 1326 686156681 686156323 4.370000e-127 464.0
13 TraesCS6A01G151800 chr7A 94.175 206 12 0 668 873 686157464 686157259 4.660000e-82 315.0
14 TraesCS6A01G151800 chr7A 81.471 367 46 16 1896 2248 686155909 686155551 4.730000e-72 281.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G151800 chr6A 135560343 135562591 2248 False 4154.000000 4154 100.000000 1 2249 1 chr6A.!!$F1 2248
1 TraesCS6A01G151800 chr6B 200007785 200009960 2175 False 1331.450000 2599 92.947000 10 2248 2 chr6B.!!$F2 2238
2 TraesCS6A01G151800 chr6D 111061263 111063384 2121 False 1287.500000 1585 89.866500 57 2248 2 chr6D.!!$F1 2191
3 TraesCS6A01G151800 chr7D 593369981 593371078 1097 True 400.500000 486 91.886000 668 1326 2 chr7D.!!$R1 658
4 TraesCS6A01G151800 chr7B 667478751 667479933 1182 False 395.000000 481 92.261000 668 1326 2 chr7B.!!$F1 658
5 TraesCS6A01G151800 chr7A 686155551 686157464 1913 True 353.333333 464 88.539333 668 2248 3 chr7A.!!$R1 1580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 149 0.244721 GCCAATGGACAGCAACTTCC 59.755 55.0 2.05 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 2325 0.036732 TACGCGTATACCCCTCGGAT 59.963 55.0 16.41 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 1.226746 CCAAGAACGTGGAGTGGAAC 58.773 55.000 0.71 0.00 41.65 3.62
47 48 1.226746 CAAGAACGTGGAGTGGAACC 58.773 55.000 0.00 0.00 37.80 3.62
48 49 1.129058 AAGAACGTGGAGTGGAACCT 58.871 50.000 0.00 0.00 37.80 3.50
49 50 0.680061 AGAACGTGGAGTGGAACCTC 59.320 55.000 0.00 0.00 37.80 3.85
50 51 0.391597 GAACGTGGAGTGGAACCTCA 59.608 55.000 0.00 0.00 37.80 3.86
51 52 0.834612 AACGTGGAGTGGAACCTCAA 59.165 50.000 0.00 0.00 37.80 3.02
52 53 0.834612 ACGTGGAGTGGAACCTCAAA 59.165 50.000 0.00 0.00 37.80 2.69
53 54 1.210967 ACGTGGAGTGGAACCTCAAAA 59.789 47.619 0.00 0.00 37.80 2.44
54 55 2.294074 CGTGGAGTGGAACCTCAAAAA 58.706 47.619 0.00 0.00 37.80 1.94
90 92 2.125106 ACGGGAAATCCTCGCTGC 60.125 61.111 9.35 0.00 34.85 5.25
95 97 0.449388 GGAAATCCTCGCTGCAACAG 59.551 55.000 0.00 0.00 34.12 3.16
114 116 6.127647 GCAACAGTCATTGGGAATTCAGAATA 60.128 38.462 7.93 0.00 0.00 1.75
120 122 6.484977 GTCATTGGGAATTCAGAATAGACCTC 59.515 42.308 7.93 0.00 0.00 3.85
147 149 0.244721 GCCAATGGACAGCAACTTCC 59.755 55.000 2.05 0.00 0.00 3.46
148 150 0.523072 CCAATGGACAGCAACTTCCG 59.477 55.000 0.00 0.00 34.24 4.30
191 197 0.749049 GCCCAACTAGTAGGGGTACG 59.251 60.000 25.60 8.18 45.58 3.67
198 204 3.051581 ACTAGTAGGGGTACGGATCAGA 58.948 50.000 0.00 0.00 0.00 3.27
200 206 3.157750 AGTAGGGGTACGGATCAGATC 57.842 52.381 1.18 1.18 0.00 2.75
202 208 2.471815 AGGGGTACGGATCAGATCAA 57.528 50.000 12.66 0.00 0.00 2.57
203 209 2.040178 AGGGGTACGGATCAGATCAAC 58.960 52.381 12.66 6.94 0.00 3.18
207 213 3.385111 GGGTACGGATCAGATCAACTTCT 59.615 47.826 12.66 0.00 0.00 2.85
211 217 7.039882 GGTACGGATCAGATCAACTTCTTTTA 58.960 38.462 12.66 0.00 0.00 1.52
215 221 7.607991 ACGGATCAGATCAACTTCTTTTATGTT 59.392 33.333 12.66 0.00 0.00 2.71
216 222 8.454106 CGGATCAGATCAACTTCTTTTATGTTT 58.546 33.333 12.66 0.00 0.00 2.83
217 223 9.565213 GGATCAGATCAACTTCTTTTATGTTTG 57.435 33.333 12.66 0.00 0.00 2.93
220 226 9.119418 TCAGATCAACTTCTTTTATGTTTGTCA 57.881 29.630 0.00 0.00 0.00 3.58
242 248 3.601443 TTTTTGTGTGTGGTGAAAGGG 57.399 42.857 0.00 0.00 0.00 3.95
243 249 2.223803 TTTGTGTGTGGTGAAAGGGT 57.776 45.000 0.00 0.00 0.00 4.34
244 250 2.223803 TTGTGTGTGGTGAAAGGGTT 57.776 45.000 0.00 0.00 0.00 4.11
264 270 4.261197 GGTTTGAAGTTGTGATGAGGACAC 60.261 45.833 0.00 0.00 38.55 3.67
271 277 3.111853 TGTGATGAGGACACTTCACAC 57.888 47.619 12.12 0.00 44.20 3.82
281 287 0.813610 CACTTCACACAGAACGGGCA 60.814 55.000 0.00 0.00 31.61 5.36
285 291 1.010125 CACACAGAACGGGCAAACG 60.010 57.895 0.00 0.00 40.31 3.60
298 304 5.633927 ACGGGCAAACGTATATTTTTCTTC 58.366 37.500 0.00 0.00 46.58 2.87
299 305 5.181622 ACGGGCAAACGTATATTTTTCTTCA 59.818 36.000 0.00 0.00 46.58 3.02
300 306 6.087522 CGGGCAAACGTATATTTTTCTTCAA 58.912 36.000 0.00 0.00 0.00 2.69
301 307 6.583050 CGGGCAAACGTATATTTTTCTTCAAA 59.417 34.615 0.00 0.00 0.00 2.69
319 325 9.998106 TTCTTCAAACTTATTAGAACTACTGCT 57.002 29.630 0.00 0.00 0.00 4.24
320 326 9.424319 TCTTCAAACTTATTAGAACTACTGCTG 57.576 33.333 0.00 0.00 0.00 4.41
321 327 9.209175 CTTCAAACTTATTAGAACTACTGCTGT 57.791 33.333 0.66 0.66 0.00 4.40
377 383 2.919494 GCCTTGGTTGGGTTGCTCG 61.919 63.158 0.00 0.00 0.00 5.03
394 400 2.590092 GTCCAAGTCCCCATCCGG 59.410 66.667 0.00 0.00 0.00 5.14
430 438 0.382873 GGTTTTGGTGGTGGTCGTTC 59.617 55.000 0.00 0.00 0.00 3.95
509 517 1.290203 CAACCTATGTGCTGTAGCGG 58.710 55.000 0.00 0.00 45.83 5.52
521 529 1.204941 CTGTAGCGGGAGTAGCAAGTT 59.795 52.381 0.00 0.00 37.01 2.66
522 530 1.621814 TGTAGCGGGAGTAGCAAGTTT 59.378 47.619 0.00 0.00 37.01 2.66
523 531 2.000447 GTAGCGGGAGTAGCAAGTTTG 59.000 52.381 0.00 0.00 37.01 2.93
604 612 4.659874 CAACCCGAACGCACGCAC 62.660 66.667 0.00 0.00 0.00 5.34
666 694 4.684703 CCAAGAAAGTACGTAGAGTTGGTG 59.315 45.833 0.00 0.00 0.00 4.17
925 1394 0.308684 CATTCATTGCCATCGACGGG 59.691 55.000 0.00 0.00 0.00 5.28
960 1439 2.353889 GCAACATGATCATCAAGCGACT 59.646 45.455 4.86 0.00 0.00 4.18
996 1589 1.219664 CACGGCGTTGGGGATCTTA 59.780 57.895 11.19 0.00 0.00 2.10
1068 1661 2.839632 ATGCGGATGGAGGCGAGA 60.840 61.111 0.00 0.00 0.00 4.04
1339 1932 0.744281 CACCTGAAAACCACCACCAC 59.256 55.000 0.00 0.00 0.00 4.16
1342 1935 1.703411 CTGAAAACCACCACCACCAT 58.297 50.000 0.00 0.00 0.00 3.55
1343 1936 2.038659 CTGAAAACCACCACCACCATT 58.961 47.619 0.00 0.00 0.00 3.16
1344 1937 2.433970 CTGAAAACCACCACCACCATTT 59.566 45.455 0.00 0.00 0.00 2.32
1345 1938 2.432510 TGAAAACCACCACCACCATTTC 59.567 45.455 0.00 0.00 0.00 2.17
1503 2135 7.472334 ACCGTATAATATTACTACCAGTGGG 57.528 40.000 15.21 0.00 41.29 4.61
1512 2144 1.910671 ACTACCAGTGGGCGGATTTTA 59.089 47.619 15.21 0.00 37.90 1.52
1515 2147 2.927028 ACCAGTGGGCGGATTTTATAC 58.073 47.619 15.21 0.00 37.90 1.47
1518 2150 4.349930 ACCAGTGGGCGGATTTTATACTAT 59.650 41.667 15.21 0.00 37.90 2.12
1528 2160 6.034683 GCGGATTTTATACTATTACGAGCCTG 59.965 42.308 0.00 0.00 0.00 4.85
1539 2171 7.667557 ACTATTACGAGCCTGAATAAAGCATA 58.332 34.615 0.00 0.00 0.00 3.14
1667 2306 2.299297 CGCGGAGGGAAATAGTATCCTT 59.701 50.000 0.00 0.00 46.37 3.36
1681 2320 1.204146 ATCCTTAGTGGCACCGACAT 58.796 50.000 15.27 0.00 35.26 3.06
1686 2325 1.188871 TAGTGGCACCGACATGTGGA 61.189 55.000 15.27 0.00 36.73 4.02
1694 2333 1.068083 CGACATGTGGATCCGAGGG 59.932 63.158 1.15 0.00 0.00 4.30
1736 2378 2.740055 CACCTGTCGTGCTCTGCC 60.740 66.667 0.00 0.00 35.18 4.85
1877 2519 1.964608 CTCGGAGCAGAGGAATGGCA 61.965 60.000 0.00 0.00 34.74 4.92
1880 2522 1.453762 GGAGCAGAGGAATGGCATGC 61.454 60.000 9.90 9.90 37.15 4.06
1882 2524 2.117156 GCAGAGGAATGGCATGCGT 61.117 57.895 12.44 0.00 0.00 5.24
2059 2813 1.590259 GATCAGCTCGGCGAAGTCC 60.590 63.158 12.13 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 1.674322 TTCTTGGGTTAGCAGCCGC 60.674 57.895 0.00 0.00 44.44 6.53
53 54 2.681344 GTCAGTTCCACTCCACGTTTTT 59.319 45.455 0.00 0.00 0.00 1.94
54 55 2.285977 GTCAGTTCCACTCCACGTTTT 58.714 47.619 0.00 0.00 0.00 2.43
55 56 1.805120 CGTCAGTTCCACTCCACGTTT 60.805 52.381 0.00 0.00 30.72 3.60
80 81 0.251354 ATGACTGTTGCAGCGAGGAT 59.749 50.000 0.00 0.00 34.37 3.24
90 92 5.710513 TTCTGAATTCCCAATGACTGTTG 57.289 39.130 2.27 0.00 0.00 3.33
95 97 6.360618 AGGTCTATTCTGAATTCCCAATGAC 58.639 40.000 8.38 10.23 0.00 3.06
114 116 1.201429 ATTGGCTTGGTCCGAGGTCT 61.201 55.000 8.30 0.00 0.00 3.85
120 122 1.303236 TGTCCATTGGCTTGGTCCG 60.303 57.895 0.00 0.00 38.01 4.79
147 149 2.432628 GGTGGTGGAGACTTCGCG 60.433 66.667 0.00 0.00 0.00 5.87
148 150 0.606604 TAAGGTGGTGGAGACTTCGC 59.393 55.000 0.00 0.00 0.00 4.70
186 192 4.657436 AGAAGTTGATCTGATCCGTACC 57.343 45.455 14.71 2.49 0.00 3.34
191 197 9.565213 CAAACATAAAAGAAGTTGATCTGATCC 57.435 33.333 14.71 0.81 0.00 3.36
225 231 2.223803 AACCCTTTCACCACACACAA 57.776 45.000 0.00 0.00 0.00 3.33
226 232 1.821753 CAAACCCTTTCACCACACACA 59.178 47.619 0.00 0.00 0.00 3.72
227 233 2.096248 TCAAACCCTTTCACCACACAC 58.904 47.619 0.00 0.00 0.00 3.82
228 234 2.516227 TCAAACCCTTTCACCACACA 57.484 45.000 0.00 0.00 0.00 3.72
229 235 2.758423 ACTTCAAACCCTTTCACCACAC 59.242 45.455 0.00 0.00 0.00 3.82
230 236 3.094484 ACTTCAAACCCTTTCACCACA 57.906 42.857 0.00 0.00 0.00 4.17
233 239 3.445805 TCACAACTTCAAACCCTTTCACC 59.554 43.478 0.00 0.00 0.00 4.02
236 242 5.507985 CCTCATCACAACTTCAAACCCTTTC 60.508 44.000 0.00 0.00 0.00 2.62
237 243 4.342092 CCTCATCACAACTTCAAACCCTTT 59.658 41.667 0.00 0.00 0.00 3.11
238 244 3.891366 CCTCATCACAACTTCAAACCCTT 59.109 43.478 0.00 0.00 0.00 3.95
239 245 3.138283 TCCTCATCACAACTTCAAACCCT 59.862 43.478 0.00 0.00 0.00 4.34
240 246 3.253432 GTCCTCATCACAACTTCAAACCC 59.747 47.826 0.00 0.00 0.00 4.11
241 247 3.882888 TGTCCTCATCACAACTTCAAACC 59.117 43.478 0.00 0.00 0.00 3.27
242 248 4.576463 AGTGTCCTCATCACAACTTCAAAC 59.424 41.667 0.00 0.00 38.16 2.93
243 249 4.780815 AGTGTCCTCATCACAACTTCAAA 58.219 39.130 0.00 0.00 38.16 2.69
244 250 4.422073 AGTGTCCTCATCACAACTTCAA 57.578 40.909 0.00 0.00 38.16 2.69
264 270 1.021202 TTTGCCCGTTCTGTGTGAAG 58.979 50.000 0.00 0.00 35.01 3.02
271 277 4.609691 AAATATACGTTTGCCCGTTCTG 57.390 40.909 0.00 0.00 42.00 3.02
293 299 9.998106 AGCAGTAGTTCTAATAAGTTTGAAGAA 57.002 29.630 0.00 0.00 31.41 2.52
295 301 9.209175 ACAGCAGTAGTTCTAATAAGTTTGAAG 57.791 33.333 0.00 0.00 31.41 3.02
296 302 8.988934 CACAGCAGTAGTTCTAATAAGTTTGAA 58.011 33.333 0.00 0.00 0.00 2.69
298 304 8.311650 ACACAGCAGTAGTTCTAATAAGTTTG 57.688 34.615 0.00 0.00 0.00 2.93
299 305 8.148351 TGACACAGCAGTAGTTCTAATAAGTTT 58.852 33.333 0.00 0.00 0.00 2.66
300 306 7.667557 TGACACAGCAGTAGTTCTAATAAGTT 58.332 34.615 0.00 0.00 0.00 2.66
301 307 7.228314 TGACACAGCAGTAGTTCTAATAAGT 57.772 36.000 0.00 0.00 0.00 2.24
318 324 0.882042 AGCCGAAACAGCTGACACAG 60.882 55.000 23.35 7.08 39.69 3.66
319 325 0.880278 GAGCCGAAACAGCTGACACA 60.880 55.000 23.35 0.00 41.75 3.72
320 326 0.601311 AGAGCCGAAACAGCTGACAC 60.601 55.000 23.35 9.55 41.75 3.67
321 327 0.319900 GAGAGCCGAAACAGCTGACA 60.320 55.000 23.35 0.00 41.75 3.58
360 366 1.515521 GACGAGCAACCCAACCAAGG 61.516 60.000 0.00 0.00 0.00 3.61
363 369 2.112297 GGACGAGCAACCCAACCA 59.888 61.111 0.00 0.00 0.00 3.67
364 370 1.515521 CTTGGACGAGCAACCCAACC 61.516 60.000 0.00 0.00 35.25 3.77
365 371 0.818040 ACTTGGACGAGCAACCCAAC 60.818 55.000 0.00 0.00 35.25 3.77
377 383 2.590092 CCGGATGGGGACTTGGAC 59.410 66.667 0.00 0.00 0.00 4.02
394 400 1.502690 ACCTTTTGTTTCCCCCAACC 58.497 50.000 0.00 0.00 0.00 3.77
401 407 3.687212 CACCACCAAAACCTTTTGTTTCC 59.313 43.478 9.17 0.00 46.39 3.13
402 408 3.687212 CCACCACCAAAACCTTTTGTTTC 59.313 43.478 9.17 0.00 46.39 2.78
480 488 4.330074 CAGCACATAGGTTGCAACTACTAC 59.670 45.833 27.64 11.74 0.00 2.73
509 517 3.003378 GTGGACAACAAACTTGCTACTCC 59.997 47.826 0.00 0.00 0.00 3.85
521 529 1.963855 CCGGCGATGTGGACAACAA 60.964 57.895 9.30 0.00 43.61 2.83
522 530 1.817911 TACCGGCGATGTGGACAACA 61.818 55.000 9.30 0.00 44.79 3.33
523 531 1.079681 TACCGGCGATGTGGACAAC 60.080 57.895 9.30 0.00 0.00 3.32
666 694 3.126831 CGAGCAGATCATGAAAGGTACC 58.873 50.000 2.73 2.73 0.00 3.34
925 1394 1.586422 TGTTGCTTCTGTCTGTCTGC 58.414 50.000 0.00 0.00 0.00 4.26
926 1395 3.396560 TCATGTTGCTTCTGTCTGTCTG 58.603 45.455 0.00 0.00 0.00 3.51
1339 1932 8.821147 TTTTTCTTGTTCTGATGATGAAATGG 57.179 30.769 0.00 0.00 0.00 3.16
1373 1966 6.444633 CAAAGTCAGAGGTTTCGAACTAGTA 58.555 40.000 0.00 0.00 0.00 1.82
1374 1967 5.290386 CAAAGTCAGAGGTTTCGAACTAGT 58.710 41.667 0.00 0.00 0.00 2.57
1376 1969 4.628074 CCAAAGTCAGAGGTTTCGAACTA 58.372 43.478 0.00 0.00 0.00 2.24
1487 2119 2.966915 TCCGCCCACTGGTAGTAATAT 58.033 47.619 0.00 0.00 0.00 1.28
1490 2122 1.575419 AATCCGCCCACTGGTAGTAA 58.425 50.000 0.00 0.00 0.00 2.24
1503 2135 6.034683 CAGGCTCGTAATAGTATAAAATCCGC 59.965 42.308 0.00 0.00 0.00 5.54
1512 2144 7.667557 TGCTTTATTCAGGCTCGTAATAGTAT 58.332 34.615 0.00 0.00 0.00 2.12
1515 2147 7.598869 TGTATGCTTTATTCAGGCTCGTAATAG 59.401 37.037 0.00 0.00 0.00 1.73
1518 2150 5.666462 TGTATGCTTTATTCAGGCTCGTAA 58.334 37.500 0.00 0.00 0.00 3.18
1528 2160 5.674008 CATCTCGTGCTGTATGCTTTATTC 58.326 41.667 0.00 0.00 43.37 1.75
1581 2213 7.513371 TCATAAATCCGGGCGTTTAAATTAT 57.487 32.000 0.00 0.00 0.00 1.28
1582 2214 6.513720 GCTCATAAATCCGGGCGTTTAAATTA 60.514 38.462 0.00 0.00 0.00 1.40
1583 2215 5.735070 GCTCATAAATCCGGGCGTTTAAATT 60.735 40.000 0.00 0.00 0.00 1.82
1584 2216 4.261447 GCTCATAAATCCGGGCGTTTAAAT 60.261 41.667 0.00 0.00 0.00 1.40
1585 2217 3.065648 GCTCATAAATCCGGGCGTTTAAA 59.934 43.478 0.00 0.00 0.00 1.52
1586 2218 2.614983 GCTCATAAATCCGGGCGTTTAA 59.385 45.455 0.00 0.00 0.00 1.52
1587 2219 2.215196 GCTCATAAATCCGGGCGTTTA 58.785 47.619 0.00 5.85 0.00 2.01
1588 2220 1.021968 GCTCATAAATCCGGGCGTTT 58.978 50.000 0.00 3.56 0.00 3.60
1589 2221 0.818040 GGCTCATAAATCCGGGCGTT 60.818 55.000 0.00 0.00 0.00 4.84
1618 2250 1.941999 GCTCTGGGTGCCAATCAAGC 61.942 60.000 0.00 0.00 30.80 4.01
1667 2306 1.188871 TCCACATGTCGGTGCCACTA 61.189 55.000 12.26 0.00 37.46 2.74
1681 2320 1.820483 CGTATACCCCTCGGATCCACA 60.820 57.143 13.41 0.00 0.00 4.17
1686 2325 0.036732 TACGCGTATACCCCTCGGAT 59.963 55.000 16.41 0.00 0.00 4.18
1736 2378 4.127040 AGCTGCTCCTCACTCGCG 62.127 66.667 0.00 0.00 0.00 5.87
1805 2447 2.182030 GGGTCAACGGAGCTCTCG 59.818 66.667 14.64 17.27 41.29 4.04
1825 2467 0.250038 CCGATCATTCGCCATGTCCT 60.250 55.000 0.00 0.00 44.12 3.85
1826 2468 0.249868 TCCGATCATTCGCCATGTCC 60.250 55.000 0.00 0.00 44.12 4.02
1828 2470 1.299541 GTTCCGATCATTCGCCATGT 58.700 50.000 0.00 0.00 44.12 3.21
1829 2471 0.233074 CGTTCCGATCATTCGCCATG 59.767 55.000 0.00 0.00 44.12 3.66
1830 2472 0.880278 CCGTTCCGATCATTCGCCAT 60.880 55.000 0.00 0.00 44.12 4.40
1852 2494 2.104729 CTCTGCTCCGAGCTCTGC 59.895 66.667 20.87 13.43 42.97 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.