Multiple sequence alignment - TraesCS6A01G149100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G149100 chr6A 100.000 3180 0 0 1 3180 130942706 130939527 0.000000e+00 5873.0
1 TraesCS6A01G149100 chr6A 97.104 2797 64 9 1 2785 189410709 189407918 0.000000e+00 4700.0
2 TraesCS6A01G149100 chr6A 89.381 113 8 4 2396 2506 75947671 75947561 4.280000e-29 139.0
3 TraesCS6A01G149100 chr2A 97.642 2799 50 8 1 2786 554433481 554430686 0.000000e+00 4789.0
4 TraesCS6A01G149100 chr2A 89.853 1833 172 12 237 2061 187816046 187817872 0.000000e+00 2342.0
5 TraesCS6A01G149100 chr2A 91.681 577 43 4 1833 2407 778138764 778139337 0.000000e+00 795.0
6 TraesCS6A01G149100 chr1A 97.247 2797 61 8 1 2785 522912149 522914941 0.000000e+00 4724.0
7 TraesCS6A01G149100 chr6B 93.918 2417 129 11 1 2407 322070781 322073189 0.000000e+00 3633.0
8 TraesCS6A01G149100 chr6B 83.654 416 36 10 2401 2785 322073234 322073648 2.330000e-96 363.0
9 TraesCS6A01G149100 chr4B 93.253 2416 136 17 1 2407 243642608 243645005 0.000000e+00 3533.0
10 TraesCS6A01G149100 chr4B 85.644 404 38 13 2396 2786 243645046 243645442 1.060000e-109 407.0
11 TraesCS6A01G149100 chr5D 89.635 2055 194 15 1 2048 80811397 80813439 0.000000e+00 2597.0
12 TraesCS6A01G149100 chr5D 87.389 2030 230 21 1 2015 32806312 32808330 0.000000e+00 2307.0
13 TraesCS6A01G149100 chr5D 87.124 2027 239 18 1 2016 62074590 62072575 0.000000e+00 2278.0
14 TraesCS6A01G149100 chr3A 91.537 579 47 2 1833 2410 694113078 694112501 0.000000e+00 797.0
15 TraesCS6A01G149100 chr3A 86.802 197 13 3 2606 2789 694112311 694112115 1.160000e-49 207.0
16 TraesCS6A01G149100 chr3A 89.381 113 8 4 2396 2506 9919652 9919542 4.280000e-29 139.0
17 TraesCS6A01G149100 chr7A 91.207 580 47 4 1833 2410 679006409 679005832 0.000000e+00 785.0
18 TraesCS6A01G149100 chr7A 95.640 367 6 4 2429 2785 63482463 63482829 5.910000e-162 580.0
19 TraesCS6A01G149100 chr4A 91.222 581 46 5 1833 2410 4008557 4007979 0.000000e+00 785.0
20 TraesCS6A01G149100 chr4A 89.381 113 8 4 2396 2506 4007942 4007832 4.280000e-29 139.0
21 TraesCS6A01G149100 chr2B 96.111 180 7 0 2606 2785 733848548 733848369 8.630000e-76 294.0
22 TraesCS6A01G149100 chr2B 90.674 193 5 2 2604 2785 403417609 403417419 8.810000e-61 244.0
23 TraesCS6A01G149100 chr2B 94.643 112 5 1 2674 2785 10414386 10414496 4.220000e-39 172.0
24 TraesCS6A01G149100 chr2B 92.982 57 3 1 2528 2584 10414310 10414365 7.310000e-12 82.4
25 TraesCS6A01G149100 chr2B 94.286 35 2 0 2555 2589 733848564 733848530 2.000000e-03 54.7
26 TraesCS6A01G149100 chr5A 85.492 193 16 2 2606 2786 77755911 77756103 1.160000e-44 191.0
27 TraesCS6A01G149100 chr5A 89.381 113 8 4 2396 2506 77755766 77755876 4.280000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G149100 chr6A 130939527 130942706 3179 True 5873 5873 100.0000 1 3180 1 chr6A.!!$R2 3179
1 TraesCS6A01G149100 chr6A 189407918 189410709 2791 True 4700 4700 97.1040 1 2785 1 chr6A.!!$R3 2784
2 TraesCS6A01G149100 chr2A 554430686 554433481 2795 True 4789 4789 97.6420 1 2786 1 chr2A.!!$R1 2785
3 TraesCS6A01G149100 chr2A 187816046 187817872 1826 False 2342 2342 89.8530 237 2061 1 chr2A.!!$F1 1824
4 TraesCS6A01G149100 chr2A 778138764 778139337 573 False 795 795 91.6810 1833 2407 1 chr2A.!!$F2 574
5 TraesCS6A01G149100 chr1A 522912149 522914941 2792 False 4724 4724 97.2470 1 2785 1 chr1A.!!$F1 2784
6 TraesCS6A01G149100 chr6B 322070781 322073648 2867 False 1998 3633 88.7860 1 2785 2 chr6B.!!$F1 2784
7 TraesCS6A01G149100 chr4B 243642608 243645442 2834 False 1970 3533 89.4485 1 2786 2 chr4B.!!$F1 2785
8 TraesCS6A01G149100 chr5D 80811397 80813439 2042 False 2597 2597 89.6350 1 2048 1 chr5D.!!$F2 2047
9 TraesCS6A01G149100 chr5D 32806312 32808330 2018 False 2307 2307 87.3890 1 2015 1 chr5D.!!$F1 2014
10 TraesCS6A01G149100 chr5D 62072575 62074590 2015 True 2278 2278 87.1240 1 2016 1 chr5D.!!$R1 2015
11 TraesCS6A01G149100 chr3A 694112115 694113078 963 True 502 797 89.1695 1833 2789 2 chr3A.!!$R2 956
12 TraesCS6A01G149100 chr7A 679005832 679006409 577 True 785 785 91.2070 1833 2410 1 chr7A.!!$R1 577
13 TraesCS6A01G149100 chr4A 4007832 4008557 725 True 462 785 90.3015 1833 2506 2 chr4A.!!$R1 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
906 912 1.002468 CCTCGAGTTGTTGCCTGTTTG 60.002 52.381 12.31 0.0 0.0 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2877 2995 0.031716 TGGGAGAGTGGATCTGGGAG 60.032 60.0 0.0 0.0 38.84 4.3 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 102 5.048083 TGTTCAACTAGGTTTCATTGATGCC 60.048 40.000 0.00 0.00 31.45 4.40
150 153 5.122869 TGAAAATGTAGTTGCATCTCAGAGC 59.877 40.000 0.00 0.00 0.00 4.09
197 200 4.803329 ATTCAAATGGAGAGGCTGGTAT 57.197 40.909 0.00 0.00 0.00 2.73
906 912 1.002468 CCTCGAGTTGTTGCCTGTTTG 60.002 52.381 12.31 0.00 0.00 2.93
962 968 3.348119 GAAGAAAAGGCCTCCTACCAAG 58.652 50.000 5.23 0.00 31.13 3.61
1074 1080 9.626045 CCATTGACATTTCCTTTTCTTAACTAC 57.374 33.333 0.00 0.00 0.00 2.73
1101 1107 9.108284 CAATAATTTTCTGGGAAACAAACTTGT 57.892 29.630 0.00 0.00 44.72 3.16
1156 1162 8.677300 TCATTCAGATCCTGCAAATAAACTAAC 58.323 33.333 0.00 0.00 0.00 2.34
1309 1317 5.422012 CACAATTCCCTAGGTAAAAATGCCT 59.578 40.000 8.29 0.00 38.81 4.75
1366 1374 5.984926 TGCTAACTTCAGAGCCAAATTTTTG 59.015 36.000 0.00 0.00 37.94 2.44
1827 1849 7.325660 ACATATCAGGAATTAAACTGCACTG 57.674 36.000 0.00 0.00 34.76 3.66
2132 2160 0.807496 GGGAAGTGCACTGCAAGATC 59.193 55.000 26.30 15.52 41.47 2.75
2259 2290 5.527951 TGTAAACAATGTCCGAAAACAGCTA 59.472 36.000 0.00 0.00 31.50 3.32
2493 2581 6.070656 TCTGTTTCATGTTTCTTTGGGAGAT 58.929 36.000 0.00 0.00 33.49 2.75
2696 2814 1.010125 GCTTGAAACAGTTCGCGCA 60.010 52.632 8.75 0.00 36.46 6.09
2786 2904 0.464452 CGTCACATAGGAGTTCCCCC 59.536 60.000 0.00 0.00 36.42 5.40
2787 2905 0.464452 GTCACATAGGAGTTCCCCCG 59.536 60.000 0.00 0.00 36.42 5.73
2788 2906 0.337082 TCACATAGGAGTTCCCCCGA 59.663 55.000 0.00 0.00 36.42 5.14
2789 2907 0.464452 CACATAGGAGTTCCCCCGAC 59.536 60.000 0.00 0.00 36.42 4.79
2790 2908 1.041447 ACATAGGAGTTCCCCCGACG 61.041 60.000 0.00 0.00 36.42 5.12
2791 2909 0.754217 CATAGGAGTTCCCCCGACGA 60.754 60.000 0.00 0.00 36.42 4.20
2792 2910 0.032813 ATAGGAGTTCCCCCGACGAA 60.033 55.000 0.00 0.00 36.42 3.85
2793 2911 0.967380 TAGGAGTTCCCCCGACGAAC 60.967 60.000 0.00 0.00 39.96 3.95
2794 2912 2.263852 GAGTTCCCCCGACGAACC 59.736 66.667 0.00 0.00 40.43 3.62
2795 2913 3.306595 GAGTTCCCCCGACGAACCC 62.307 68.421 0.00 0.00 40.43 4.11
2796 2914 3.316760 GTTCCCCCGACGAACCCT 61.317 66.667 0.00 0.00 34.75 4.34
2797 2915 2.999063 TTCCCCCGACGAACCCTC 60.999 66.667 0.00 0.00 0.00 4.30
2798 2916 3.534704 TTCCCCCGACGAACCCTCT 62.535 63.158 0.00 0.00 0.00 3.69
2799 2917 3.459063 CCCCCGACGAACCCTCTC 61.459 72.222 0.00 0.00 0.00 3.20
2800 2918 2.678934 CCCCGACGAACCCTCTCA 60.679 66.667 0.00 0.00 0.00 3.27
2801 2919 2.058595 CCCCGACGAACCCTCTCAT 61.059 63.158 0.00 0.00 0.00 2.90
2802 2920 1.437986 CCCGACGAACCCTCTCATC 59.562 63.158 0.00 0.00 0.00 2.92
2803 2921 1.437986 CCGACGAACCCTCTCATCC 59.562 63.158 0.00 0.00 0.00 3.51
2804 2922 1.437986 CGACGAACCCTCTCATCCC 59.562 63.158 0.00 0.00 0.00 3.85
2805 2923 1.823976 GACGAACCCTCTCATCCCC 59.176 63.158 0.00 0.00 0.00 4.81
2806 2924 2.017559 GACGAACCCTCTCATCCCCG 62.018 65.000 0.00 0.00 0.00 5.73
2807 2925 2.058595 CGAACCCTCTCATCCCCGT 61.059 63.158 0.00 0.00 0.00 5.28
2808 2926 1.823976 GAACCCTCTCATCCCCGTC 59.176 63.158 0.00 0.00 0.00 4.79
2809 2927 1.687297 GAACCCTCTCATCCCCGTCC 61.687 65.000 0.00 0.00 0.00 4.79
2810 2928 2.041922 CCCTCTCATCCCCGTCCA 60.042 66.667 0.00 0.00 0.00 4.02
2811 2929 2.435693 CCCTCTCATCCCCGTCCAC 61.436 68.421 0.00 0.00 0.00 4.02
2812 2930 2.786495 CCTCTCATCCCCGTCCACG 61.786 68.421 0.00 0.00 39.44 4.94
2813 2931 2.036731 TCTCATCCCCGTCCACGT 59.963 61.111 0.00 0.00 37.74 4.49
2814 2932 2.005960 CTCTCATCCCCGTCCACGTC 62.006 65.000 0.00 0.00 37.74 4.34
2815 2933 3.411418 CTCATCCCCGTCCACGTCG 62.411 68.421 0.00 0.00 37.74 5.12
2816 2934 3.755628 CATCCCCGTCCACGTCGT 61.756 66.667 0.00 0.00 37.74 4.34
2817 2935 3.446570 ATCCCCGTCCACGTCGTC 61.447 66.667 0.00 0.00 37.74 4.20
2829 2947 3.138798 GTCGTCGGCAGGGCTCTA 61.139 66.667 0.00 0.00 0.00 2.43
2830 2948 2.361992 TCGTCGGCAGGGCTCTAA 60.362 61.111 0.00 0.00 0.00 2.10
2831 2949 2.105128 CGTCGGCAGGGCTCTAAG 59.895 66.667 0.00 0.00 0.00 2.18
2832 2950 2.501610 GTCGGCAGGGCTCTAAGG 59.498 66.667 0.00 0.00 0.00 2.69
2833 2951 3.470888 TCGGCAGGGCTCTAAGGC 61.471 66.667 0.00 0.00 40.51 4.35
2840 2958 2.189784 GGCTCTAAGGCCGAACCC 59.810 66.667 0.00 0.00 42.82 4.11
2841 2959 2.189784 GCTCTAAGGCCGAACCCC 59.810 66.667 0.00 0.00 40.58 4.95
2842 2960 2.499685 CTCTAAGGCCGAACCCCG 59.500 66.667 0.00 0.00 40.58 5.73
2843 2961 3.735037 CTCTAAGGCCGAACCCCGC 62.735 68.421 0.00 0.00 40.58 6.13
2872 2990 3.330720 CTCCCCACACCCCCACTC 61.331 72.222 0.00 0.00 0.00 3.51
2873 2991 4.194497 TCCCCACACCCCCACTCA 62.194 66.667 0.00 0.00 0.00 3.41
2874 2992 3.966543 CCCCACACCCCCACTCAC 61.967 72.222 0.00 0.00 0.00 3.51
2875 2993 3.966543 CCCACACCCCCACTCACC 61.967 72.222 0.00 0.00 0.00 4.02
2876 2994 3.966543 CCACACCCCCACTCACCC 61.967 72.222 0.00 0.00 0.00 4.61
2877 2995 3.966543 CACACCCCCACTCACCCC 61.967 72.222 0.00 0.00 0.00 4.95
2878 2996 4.202030 ACACCCCCACTCACCCCT 62.202 66.667 0.00 0.00 0.00 4.79
2879 2997 3.330720 CACCCCCACTCACCCCTC 61.331 72.222 0.00 0.00 0.00 4.30
2880 2998 4.677151 ACCCCCACTCACCCCTCC 62.677 72.222 0.00 0.00 0.00 4.30
2882 3000 4.675303 CCCCACTCACCCCTCCCA 62.675 72.222 0.00 0.00 0.00 4.37
2883 3001 3.011517 CCCACTCACCCCTCCCAG 61.012 72.222 0.00 0.00 0.00 4.45
2884 3002 2.122729 CCACTCACCCCTCCCAGA 59.877 66.667 0.00 0.00 0.00 3.86
2885 3003 1.307343 CCACTCACCCCTCCCAGAT 60.307 63.158 0.00 0.00 0.00 2.90
2886 3004 1.341156 CCACTCACCCCTCCCAGATC 61.341 65.000 0.00 0.00 0.00 2.75
2887 3005 1.003573 ACTCACCCCTCCCAGATCC 59.996 63.158 0.00 0.00 0.00 3.36
2888 3006 1.003442 CTCACCCCTCCCAGATCCA 59.997 63.158 0.00 0.00 0.00 3.41
2889 3007 1.306997 TCACCCCTCCCAGATCCAC 60.307 63.158 0.00 0.00 0.00 4.02
2890 3008 1.307343 CACCCCTCCCAGATCCACT 60.307 63.158 0.00 0.00 0.00 4.00
2891 3009 1.003573 ACCCCTCCCAGATCCACTC 59.996 63.158 0.00 0.00 0.00 3.51
2892 3010 1.316266 CCCCTCCCAGATCCACTCT 59.684 63.158 0.00 0.00 33.14 3.24
2893 3011 0.762461 CCCCTCCCAGATCCACTCTC 60.762 65.000 0.00 0.00 29.16 3.20
2894 3012 0.762461 CCCTCCCAGATCCACTCTCC 60.762 65.000 0.00 0.00 29.16 3.71
2895 3013 0.762461 CCTCCCAGATCCACTCTCCC 60.762 65.000 0.00 0.00 29.16 4.30
2896 3014 0.031716 CTCCCAGATCCACTCTCCCA 60.032 60.000 0.00 0.00 29.16 4.37
2897 3015 0.325671 TCCCAGATCCACTCTCCCAC 60.326 60.000 0.00 0.00 29.16 4.61
2898 3016 0.326048 CCCAGATCCACTCTCCCACT 60.326 60.000 0.00 0.00 29.16 4.00
2899 3017 1.118838 CCAGATCCACTCTCCCACTC 58.881 60.000 0.00 0.00 29.16 3.51
2900 3018 1.118838 CAGATCCACTCTCCCACTCC 58.881 60.000 0.00 0.00 29.16 3.85
2901 3019 1.014804 AGATCCACTCTCCCACTCCT 58.985 55.000 0.00 0.00 0.00 3.69
2902 3020 1.063266 AGATCCACTCTCCCACTCCTC 60.063 57.143 0.00 0.00 0.00 3.71
2903 3021 1.014804 ATCCACTCTCCCACTCCTCT 58.985 55.000 0.00 0.00 0.00 3.69
2904 3022 0.333312 TCCACTCTCCCACTCCTCTC 59.667 60.000 0.00 0.00 0.00 3.20
2905 3023 0.686112 CCACTCTCCCACTCCTCTCC 60.686 65.000 0.00 0.00 0.00 3.71
2906 3024 0.686112 CACTCTCCCACTCCTCTCCC 60.686 65.000 0.00 0.00 0.00 4.30
2907 3025 0.853586 ACTCTCCCACTCCTCTCCCT 60.854 60.000 0.00 0.00 0.00 4.20
2908 3026 0.106217 CTCTCCCACTCCTCTCCCTC 60.106 65.000 0.00 0.00 0.00 4.30
2909 3027 1.075600 CTCCCACTCCTCTCCCTCC 60.076 68.421 0.00 0.00 0.00 4.30
2910 3028 1.547755 TCCCACTCCTCTCCCTCCT 60.548 63.158 0.00 0.00 0.00 3.69
2911 3029 1.075600 CCCACTCCTCTCCCTCCTC 60.076 68.421 0.00 0.00 0.00 3.71
2912 3030 1.454847 CCACTCCTCTCCCTCCTCG 60.455 68.421 0.00 0.00 0.00 4.63
2913 3031 2.124693 CACTCCTCTCCCTCCTCGC 61.125 68.421 0.00 0.00 0.00 5.03
2914 3032 2.313427 ACTCCTCTCCCTCCTCGCT 61.313 63.158 0.00 0.00 0.00 4.93
2915 3033 1.528309 CTCCTCTCCCTCCTCGCTC 60.528 68.421 0.00 0.00 0.00 5.03
2916 3034 2.904866 CCTCTCCCTCCTCGCTCG 60.905 72.222 0.00 0.00 0.00 5.03
2917 3035 2.904866 CTCTCCCTCCTCGCTCGG 60.905 72.222 0.00 0.00 0.00 4.63
2918 3036 3.707640 CTCTCCCTCCTCGCTCGGT 62.708 68.421 0.00 0.00 0.00 4.69
2919 3037 2.756283 CTCCCTCCTCGCTCGGTT 60.756 66.667 0.00 0.00 0.00 4.44
2920 3038 2.754658 TCCCTCCTCGCTCGGTTC 60.755 66.667 0.00 0.00 0.00 3.62
2921 3039 3.839432 CCCTCCTCGCTCGGTTCC 61.839 72.222 0.00 0.00 0.00 3.62
2922 3040 3.068691 CCTCCTCGCTCGGTTCCA 61.069 66.667 0.00 0.00 0.00 3.53
2923 3041 2.182030 CTCCTCGCTCGGTTCCAC 59.818 66.667 0.00 0.00 0.00 4.02
2924 3042 2.282958 TCCTCGCTCGGTTCCACT 60.283 61.111 0.00 0.00 0.00 4.00
2925 3043 1.878656 CTCCTCGCTCGGTTCCACTT 61.879 60.000 0.00 0.00 0.00 3.16
2926 3044 1.446272 CCTCGCTCGGTTCCACTTC 60.446 63.158 0.00 0.00 0.00 3.01
2927 3045 1.289066 CTCGCTCGGTTCCACTTCA 59.711 57.895 0.00 0.00 0.00 3.02
2928 3046 1.006571 TCGCTCGGTTCCACTTCAC 60.007 57.895 0.00 0.00 0.00 3.18
2929 3047 1.300620 CGCTCGGTTCCACTTCACA 60.301 57.895 0.00 0.00 0.00 3.58
2930 3048 1.557443 CGCTCGGTTCCACTTCACAC 61.557 60.000 0.00 0.00 0.00 3.82
2931 3049 1.228657 GCTCGGTTCCACTTCACACC 61.229 60.000 0.00 0.00 0.00 4.16
2932 3050 0.105964 CTCGGTTCCACTTCACACCA 59.894 55.000 0.00 0.00 0.00 4.17
2933 3051 0.179067 TCGGTTCCACTTCACACCAC 60.179 55.000 0.00 0.00 0.00 4.16
2934 3052 0.462937 CGGTTCCACTTCACACCACA 60.463 55.000 0.00 0.00 0.00 4.17
2935 3053 1.308998 GGTTCCACTTCACACCACAG 58.691 55.000 0.00 0.00 0.00 3.66
2936 3054 0.663153 GTTCCACTTCACACCACAGC 59.337 55.000 0.00 0.00 0.00 4.40
2937 3055 0.465460 TTCCACTTCACACCACAGCC 60.465 55.000 0.00 0.00 0.00 4.85
2938 3056 1.152984 CCACTTCACACCACAGCCA 60.153 57.895 0.00 0.00 0.00 4.75
2939 3057 1.447317 CCACTTCACACCACAGCCAC 61.447 60.000 0.00 0.00 0.00 5.01
2940 3058 1.152963 ACTTCACACCACAGCCACC 60.153 57.895 0.00 0.00 0.00 4.61
2941 3059 1.898574 CTTCACACCACAGCCACCC 60.899 63.158 0.00 0.00 0.00 4.61
2942 3060 3.429372 TTCACACCACAGCCACCCC 62.429 63.158 0.00 0.00 0.00 4.95
2943 3061 4.202574 CACACCACAGCCACCCCA 62.203 66.667 0.00 0.00 0.00 4.96
2944 3062 4.204028 ACACCACAGCCACCCCAC 62.204 66.667 0.00 0.00 0.00 4.61
2953 3071 3.646715 CCACCCCACGACCACCAT 61.647 66.667 0.00 0.00 0.00 3.55
2954 3072 2.359850 CACCCCACGACCACCATG 60.360 66.667 0.00 0.00 0.00 3.66
2955 3073 2.528127 ACCCCACGACCACCATGA 60.528 61.111 0.00 0.00 0.00 3.07
2956 3074 2.046314 CCCCACGACCACCATGAC 60.046 66.667 0.00 0.00 0.00 3.06
2957 3075 2.046314 CCCACGACCACCATGACC 60.046 66.667 0.00 0.00 0.00 4.02
2958 3076 2.434185 CCACGACCACCATGACCG 60.434 66.667 0.00 0.00 0.00 4.79
2959 3077 3.118454 CACGACCACCATGACCGC 61.118 66.667 0.00 0.00 0.00 5.68
2960 3078 4.735132 ACGACCACCATGACCGCG 62.735 66.667 0.00 0.00 0.00 6.46
2962 3080 4.388499 GACCACCATGACCGCGGT 62.388 66.667 34.89 34.89 35.27 5.68
3007 3125 3.532155 GCCTCGCCTCGTCTCCAT 61.532 66.667 0.00 0.00 0.00 3.41
3008 3126 2.415010 CCTCGCCTCGTCTCCATG 59.585 66.667 0.00 0.00 0.00 3.66
3009 3127 2.279120 CTCGCCTCGTCTCCATGC 60.279 66.667 0.00 0.00 0.00 4.06
3010 3128 3.781770 CTCGCCTCGTCTCCATGCC 62.782 68.421 0.00 0.00 0.00 4.40
3011 3129 3.842923 CGCCTCGTCTCCATGCCT 61.843 66.667 0.00 0.00 0.00 4.75
3012 3130 2.490148 CGCCTCGTCTCCATGCCTA 61.490 63.158 0.00 0.00 0.00 3.93
3013 3131 1.365633 GCCTCGTCTCCATGCCTAG 59.634 63.158 0.00 0.00 0.00 3.02
3014 3132 1.395826 GCCTCGTCTCCATGCCTAGT 61.396 60.000 0.00 0.00 0.00 2.57
3015 3133 0.671251 CCTCGTCTCCATGCCTAGTC 59.329 60.000 0.00 0.00 0.00 2.59
3016 3134 0.309302 CTCGTCTCCATGCCTAGTCG 59.691 60.000 0.00 0.00 0.00 4.18
3017 3135 0.107361 TCGTCTCCATGCCTAGTCGA 60.107 55.000 6.32 6.32 32.34 4.20
3018 3136 0.738975 CGTCTCCATGCCTAGTCGAA 59.261 55.000 0.00 0.00 0.00 3.71
3019 3137 1.534175 CGTCTCCATGCCTAGTCGAAC 60.534 57.143 0.00 0.00 0.00 3.95
3020 3138 1.112113 TCTCCATGCCTAGTCGAACC 58.888 55.000 0.00 0.00 0.00 3.62
3021 3139 0.249073 CTCCATGCCTAGTCGAACCG 60.249 60.000 0.00 0.00 0.00 4.44
3022 3140 1.883084 CCATGCCTAGTCGAACCGC 60.883 63.158 0.00 0.00 0.00 5.68
3023 3141 1.883084 CATGCCTAGTCGAACCGCC 60.883 63.158 0.00 0.00 0.00 6.13
3024 3142 3.426117 ATGCCTAGTCGAACCGCCG 62.426 63.158 0.00 0.00 0.00 6.46
3025 3143 4.125695 GCCTAGTCGAACCGCCGT 62.126 66.667 0.00 0.00 0.00 5.68
3026 3144 2.101770 CCTAGTCGAACCGCCGTC 59.898 66.667 0.00 0.00 0.00 4.79
3027 3145 2.693762 CCTAGTCGAACCGCCGTCA 61.694 63.158 0.00 0.00 0.00 4.35
3028 3146 1.432251 CTAGTCGAACCGCCGTCAT 59.568 57.895 0.00 0.00 0.00 3.06
3029 3147 0.591741 CTAGTCGAACCGCCGTCATC 60.592 60.000 0.00 0.00 0.00 2.92
3030 3148 1.996786 TAGTCGAACCGCCGTCATCC 61.997 60.000 0.00 0.00 0.00 3.51
3031 3149 3.375239 TCGAACCGCCGTCATCCA 61.375 61.111 0.00 0.00 0.00 3.41
3032 3150 3.186047 CGAACCGCCGTCATCCAC 61.186 66.667 0.00 0.00 0.00 4.02
3033 3151 2.264794 GAACCGCCGTCATCCACT 59.735 61.111 0.00 0.00 0.00 4.00
3034 3152 1.514087 GAACCGCCGTCATCCACTA 59.486 57.895 0.00 0.00 0.00 2.74
3035 3153 0.804933 GAACCGCCGTCATCCACTAC 60.805 60.000 0.00 0.00 0.00 2.73
3036 3154 2.106332 CCGCCGTCATCCACTACC 59.894 66.667 0.00 0.00 0.00 3.18
3037 3155 2.423898 CCGCCGTCATCCACTACCT 61.424 63.158 0.00 0.00 0.00 3.08
3038 3156 1.065928 CGCCGTCATCCACTACCTC 59.934 63.158 0.00 0.00 0.00 3.85
3039 3157 1.384989 CGCCGTCATCCACTACCTCT 61.385 60.000 0.00 0.00 0.00 3.69
3040 3158 0.824759 GCCGTCATCCACTACCTCTT 59.175 55.000 0.00 0.00 0.00 2.85
3041 3159 1.202428 GCCGTCATCCACTACCTCTTC 60.202 57.143 0.00 0.00 0.00 2.87
3042 3160 1.409427 CCGTCATCCACTACCTCTTCC 59.591 57.143 0.00 0.00 0.00 3.46
3043 3161 2.100197 CGTCATCCACTACCTCTTCCA 58.900 52.381 0.00 0.00 0.00 3.53
3044 3162 2.159226 CGTCATCCACTACCTCTTCCAC 60.159 54.545 0.00 0.00 0.00 4.02
3045 3163 2.100197 TCATCCACTACCTCTTCCACG 58.900 52.381 0.00 0.00 0.00 4.94
3046 3164 0.824759 ATCCACTACCTCTTCCACGC 59.175 55.000 0.00 0.00 0.00 5.34
3047 3165 0.541063 TCCACTACCTCTTCCACGCA 60.541 55.000 0.00 0.00 0.00 5.24
3048 3166 0.320374 CCACTACCTCTTCCACGCAA 59.680 55.000 0.00 0.00 0.00 4.85
3049 3167 1.270625 CCACTACCTCTTCCACGCAAA 60.271 52.381 0.00 0.00 0.00 3.68
3050 3168 1.798813 CACTACCTCTTCCACGCAAAC 59.201 52.381 0.00 0.00 0.00 2.93
3052 3170 0.675083 TACCTCTTCCACGCAAACGA 59.325 50.000 0.00 0.00 43.93 3.85
3053 3171 0.179067 ACCTCTTCCACGCAAACGAA 60.179 50.000 0.00 0.00 43.93 3.85
3054 3172 1.156736 CCTCTTCCACGCAAACGAAT 58.843 50.000 0.00 0.00 43.93 3.34
3055 3173 1.535462 CCTCTTCCACGCAAACGAATT 59.465 47.619 0.00 0.00 43.93 2.17
3056 3174 2.574322 CTCTTCCACGCAAACGAATTG 58.426 47.619 0.00 0.00 43.93 2.32
3057 3175 1.265635 TCTTCCACGCAAACGAATTGG 59.734 47.619 0.00 0.00 43.93 3.16
3058 3176 1.265635 CTTCCACGCAAACGAATTGGA 59.734 47.619 0.00 0.00 43.93 3.53
3059 3177 0.871722 TCCACGCAAACGAATTGGAG 59.128 50.000 0.00 0.00 43.93 3.86
3060 3178 0.729140 CCACGCAAACGAATTGGAGC 60.729 55.000 0.00 0.00 43.93 4.70
3061 3179 0.729140 CACGCAAACGAATTGGAGCC 60.729 55.000 0.00 0.00 43.93 4.70
3062 3180 1.511887 CGCAAACGAATTGGAGCCG 60.512 57.895 0.00 0.00 43.93 5.52
3063 3181 1.154035 GCAAACGAATTGGAGCCGG 60.154 57.895 0.00 0.00 39.54 6.13
3064 3182 1.506262 CAAACGAATTGGAGCCGGG 59.494 57.895 2.18 0.00 35.27 5.73
3065 3183 0.958382 CAAACGAATTGGAGCCGGGA 60.958 55.000 2.18 0.00 35.27 5.14
3066 3184 0.676782 AAACGAATTGGAGCCGGGAG 60.677 55.000 2.18 0.00 0.00 4.30
3067 3185 2.897350 CGAATTGGAGCCGGGAGC 60.897 66.667 2.18 0.00 44.25 4.70
3068 3186 2.517166 GAATTGGAGCCGGGAGCC 60.517 66.667 2.18 0.00 45.47 4.70
3069 3187 3.338250 AATTGGAGCCGGGAGCCA 61.338 61.111 2.18 0.35 45.47 4.75
3070 3188 3.645268 AATTGGAGCCGGGAGCCAC 62.645 63.158 2.18 0.00 45.47 5.01
3098 3216 3.461773 CCCATGACGCCGTCCTCT 61.462 66.667 15.60 0.00 0.00 3.69
3099 3217 2.579201 CCATGACGCCGTCCTCTT 59.421 61.111 15.60 0.00 0.00 2.85
3100 3218 1.519455 CCATGACGCCGTCCTCTTC 60.519 63.158 15.60 0.00 0.00 2.87
3101 3219 1.519455 CATGACGCCGTCCTCTTCC 60.519 63.158 15.60 0.00 0.00 3.46
3102 3220 1.682684 ATGACGCCGTCCTCTTCCT 60.683 57.895 15.60 0.00 0.00 3.36
3103 3221 1.668101 ATGACGCCGTCCTCTTCCTC 61.668 60.000 15.60 0.00 0.00 3.71
3104 3222 3.398353 GACGCCGTCCTCTTCCTCG 62.398 68.421 5.81 0.00 0.00 4.63
3105 3223 4.194720 CGCCGTCCTCTTCCTCGG 62.195 72.222 0.00 0.00 44.86 4.63
3107 3225 3.839432 CCGTCCTCTTCCTCGGCC 61.839 72.222 0.00 0.00 36.68 6.13
3108 3226 2.756283 CGTCCTCTTCCTCGGCCT 60.756 66.667 0.00 0.00 0.00 5.19
3109 3227 2.776913 CGTCCTCTTCCTCGGCCTC 61.777 68.421 0.00 0.00 0.00 4.70
3110 3228 2.440430 TCCTCTTCCTCGGCCTCG 60.440 66.667 0.00 0.00 37.82 4.63
3111 3229 4.214327 CCTCTTCCTCGGCCTCGC 62.214 72.222 0.00 0.00 36.13 5.03
3112 3230 3.144193 CTCTTCCTCGGCCTCGCT 61.144 66.667 0.00 0.00 36.13 4.93
3113 3231 1.824329 CTCTTCCTCGGCCTCGCTA 60.824 63.158 0.00 0.00 36.13 4.26
3114 3232 1.791103 CTCTTCCTCGGCCTCGCTAG 61.791 65.000 0.00 0.00 36.13 3.42
3115 3233 3.492311 CTTCCTCGGCCTCGCTAGC 62.492 68.421 4.06 4.06 36.13 3.42
3116 3234 4.815108 TCCTCGGCCTCGCTAGCA 62.815 66.667 16.45 0.92 36.13 3.49
3117 3235 3.838271 CCTCGGCCTCGCTAGCAA 61.838 66.667 16.45 0.00 36.13 3.91
3118 3236 2.184322 CTCGGCCTCGCTAGCAAA 59.816 61.111 16.45 0.58 36.13 3.68
3119 3237 2.125673 TCGGCCTCGCTAGCAAAC 60.126 61.111 16.45 0.24 36.13 2.93
3120 3238 3.195698 CGGCCTCGCTAGCAAACC 61.196 66.667 16.45 9.14 0.00 3.27
3121 3239 2.824489 GGCCTCGCTAGCAAACCC 60.824 66.667 16.45 5.64 0.00 4.11
3122 3240 2.824489 GCCTCGCTAGCAAACCCC 60.824 66.667 16.45 0.00 0.00 4.95
3123 3241 2.668632 CCTCGCTAGCAAACCCCA 59.331 61.111 16.45 0.00 0.00 4.96
3124 3242 1.224592 CCTCGCTAGCAAACCCCAT 59.775 57.895 16.45 0.00 0.00 4.00
3125 3243 0.815615 CCTCGCTAGCAAACCCCATC 60.816 60.000 16.45 0.00 0.00 3.51
3126 3244 0.107703 CTCGCTAGCAAACCCCATCA 60.108 55.000 16.45 0.00 0.00 3.07
3127 3245 0.326595 TCGCTAGCAAACCCCATCAA 59.673 50.000 16.45 0.00 0.00 2.57
3128 3246 1.064758 TCGCTAGCAAACCCCATCAAT 60.065 47.619 16.45 0.00 0.00 2.57
3129 3247 1.750778 CGCTAGCAAACCCCATCAATT 59.249 47.619 16.45 0.00 0.00 2.32
3130 3248 2.223572 CGCTAGCAAACCCCATCAATTC 60.224 50.000 16.45 0.00 0.00 2.17
3131 3249 3.026694 GCTAGCAAACCCCATCAATTCT 58.973 45.455 10.63 0.00 0.00 2.40
3132 3250 3.181483 GCTAGCAAACCCCATCAATTCTG 60.181 47.826 10.63 0.00 0.00 3.02
3133 3251 2.181975 AGCAAACCCCATCAATTCTGG 58.818 47.619 0.00 0.00 0.00 3.86
3134 3252 1.405933 GCAAACCCCATCAATTCTGGC 60.406 52.381 0.00 0.00 32.08 4.85
3135 3253 1.135024 CAAACCCCATCAATTCTGGCG 60.135 52.381 0.00 0.00 32.08 5.69
3136 3254 1.322538 AACCCCATCAATTCTGGCGC 61.323 55.000 0.00 0.00 32.08 6.53
3137 3255 2.492773 CCCCATCAATTCTGGCGCC 61.493 63.158 22.73 22.73 32.08 6.53
3138 3256 1.753848 CCCATCAATTCTGGCGCCA 60.754 57.895 30.59 30.59 32.08 5.69
3139 3257 1.111116 CCCATCAATTCTGGCGCCAT 61.111 55.000 32.87 13.54 32.08 4.40
3140 3258 0.313043 CCATCAATTCTGGCGCCATC 59.687 55.000 32.87 1.30 0.00 3.51
3141 3259 1.315690 CATCAATTCTGGCGCCATCT 58.684 50.000 32.87 14.96 0.00 2.90
3142 3260 1.001706 CATCAATTCTGGCGCCATCTG 60.002 52.381 32.87 22.98 0.00 2.90
3143 3261 1.065273 CAATTCTGGCGCCATCTGC 59.935 57.895 32.87 0.00 0.00 4.26
3144 3262 1.378911 AATTCTGGCGCCATCTGCA 60.379 52.632 32.87 9.66 41.33 4.41
3145 3263 1.381928 AATTCTGGCGCCATCTGCAG 61.382 55.000 32.87 17.79 41.33 4.41
3148 3266 3.745240 CTGGCGCCATCTGCAGCTA 62.745 63.158 32.87 1.81 41.33 3.32
3149 3267 3.275338 GGCGCCATCTGCAGCTAC 61.275 66.667 24.80 0.00 41.33 3.58
3150 3268 2.202987 GCGCCATCTGCAGCTACT 60.203 61.111 9.47 0.00 41.33 2.57
3151 3269 1.068083 GCGCCATCTGCAGCTACTA 59.932 57.895 9.47 0.00 41.33 1.82
3152 3270 0.530650 GCGCCATCTGCAGCTACTAA 60.531 55.000 9.47 0.00 41.33 2.24
3153 3271 1.212616 CGCCATCTGCAGCTACTAAC 58.787 55.000 9.47 0.00 41.33 2.34
3154 3272 1.587547 GCCATCTGCAGCTACTAACC 58.412 55.000 9.47 0.00 40.77 2.85
3155 3273 1.811941 GCCATCTGCAGCTACTAACCC 60.812 57.143 9.47 0.00 40.77 4.11
3156 3274 1.765314 CCATCTGCAGCTACTAACCCT 59.235 52.381 9.47 0.00 0.00 4.34
3157 3275 2.224161 CCATCTGCAGCTACTAACCCTC 60.224 54.545 9.47 0.00 0.00 4.30
3158 3276 1.486211 TCTGCAGCTACTAACCCTCC 58.514 55.000 9.47 0.00 0.00 4.30
3159 3277 0.103208 CTGCAGCTACTAACCCTCCG 59.897 60.000 0.00 0.00 0.00 4.63
3160 3278 0.323999 TGCAGCTACTAACCCTCCGA 60.324 55.000 0.00 0.00 0.00 4.55
3161 3279 0.102663 GCAGCTACTAACCCTCCGAC 59.897 60.000 0.00 0.00 0.00 4.79
3162 3280 0.381089 CAGCTACTAACCCTCCGACG 59.619 60.000 0.00 0.00 0.00 5.12
3163 3281 0.254178 AGCTACTAACCCTCCGACGA 59.746 55.000 0.00 0.00 0.00 4.20
3164 3282 0.662085 GCTACTAACCCTCCGACGAG 59.338 60.000 0.00 0.00 35.72 4.18
3165 3283 0.662085 CTACTAACCCTCCGACGAGC 59.338 60.000 0.00 0.00 34.49 5.03
3166 3284 0.749454 TACTAACCCTCCGACGAGCC 60.749 60.000 0.00 0.00 34.49 4.70
3167 3285 1.753463 CTAACCCTCCGACGAGCCT 60.753 63.158 0.00 0.00 34.49 4.58
3168 3286 1.304713 TAACCCTCCGACGAGCCTT 60.305 57.895 0.00 0.00 34.49 4.35
3169 3287 0.901580 TAACCCTCCGACGAGCCTTT 60.902 55.000 0.00 0.00 34.49 3.11
3170 3288 2.168666 AACCCTCCGACGAGCCTTTC 62.169 60.000 0.00 0.00 34.49 2.62
3171 3289 2.352032 CCCTCCGACGAGCCTTTCT 61.352 63.158 0.00 0.00 34.49 2.52
3172 3290 1.592223 CCTCCGACGAGCCTTTCTT 59.408 57.895 0.00 0.00 34.49 2.52
3173 3291 0.737715 CCTCCGACGAGCCTTTCTTG 60.738 60.000 0.00 0.00 34.49 3.02
3174 3292 1.355066 CTCCGACGAGCCTTTCTTGC 61.355 60.000 0.00 0.00 0.00 4.01
3175 3293 2.730672 CCGACGAGCCTTTCTTGCG 61.731 63.158 0.00 0.00 0.00 4.85
3176 3294 2.476499 GACGAGCCTTTCTTGCGC 59.524 61.111 0.00 0.00 0.00 6.09
3177 3295 2.029844 GACGAGCCTTTCTTGCGCT 61.030 57.895 9.73 0.00 34.97 5.92
3178 3296 1.960994 GACGAGCCTTTCTTGCGCTC 61.961 60.000 9.73 0.00 44.48 5.03
3179 3297 2.744768 CGAGCCTTTCTTGCGCTCC 61.745 63.158 9.73 0.00 44.99 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 89 2.487762 TCCAGTTCGGCATCAATGAAAC 59.512 45.455 0.00 0.00 33.14 2.78
99 102 4.378459 GGCAACAAGTCTTTATCCAGTTCG 60.378 45.833 0.00 0.00 0.00 3.95
150 153 4.796830 GCATGCATTGTATTGTTGAGAGTG 59.203 41.667 14.21 0.00 0.00 3.51
197 200 7.703058 TCTGTGTCTTGATATTGAGTGACTA 57.297 36.000 0.00 0.00 0.00 2.59
271 274 3.624777 AGGAACGAGATGCAAATGGAAT 58.375 40.909 0.00 0.00 0.00 3.01
906 912 6.472486 GCTGGTCTTTGTTCTTTAGTTTTGAC 59.528 38.462 0.00 0.00 0.00 3.18
962 968 2.426522 TGTGCTCCACTATTTCACTGC 58.573 47.619 0.00 0.00 35.11 4.40
1074 1080 8.558700 CAAGTTTGTTTCCCAGAAAATTATTGG 58.441 33.333 0.00 0.00 0.00 3.16
1101 1107 5.684704 CATTGGGTTCATTAGCTTCTCCTA 58.315 41.667 0.00 0.00 0.00 2.94
1309 1317 7.595819 AATCCACTGTTTTTCCTTGAATACA 57.404 32.000 0.00 0.00 0.00 2.29
1366 1374 5.243283 ACTGTAGTACGGGTTCATGATATCC 59.757 44.000 13.69 0.00 0.00 2.59
1998 2026 5.819991 TGGAATGAAAGAACAGGCTCTAAT 58.180 37.500 0.00 0.00 0.00 1.73
2493 2581 6.474140 TCTACTGTTCCACTGTTTCAACTA 57.526 37.500 0.00 0.00 32.45 2.24
2786 2904 1.437986 GGGATGAGAGGGTTCGTCG 59.562 63.158 0.00 0.00 34.58 5.12
2787 2905 1.823976 GGGGATGAGAGGGTTCGTC 59.176 63.158 0.00 0.00 33.30 4.20
2788 2906 2.058595 CGGGGATGAGAGGGTTCGT 61.059 63.158 0.00 0.00 0.00 3.85
2789 2907 2.017559 GACGGGGATGAGAGGGTTCG 62.018 65.000 0.00 0.00 0.00 3.95
2790 2908 1.687297 GGACGGGGATGAGAGGGTTC 61.687 65.000 0.00 0.00 0.00 3.62
2791 2909 1.689582 GGACGGGGATGAGAGGGTT 60.690 63.158 0.00 0.00 0.00 4.11
2792 2910 2.041819 GGACGGGGATGAGAGGGT 60.042 66.667 0.00 0.00 0.00 4.34
2793 2911 2.041922 TGGACGGGGATGAGAGGG 60.042 66.667 0.00 0.00 0.00 4.30
2794 2912 2.786495 CGTGGACGGGGATGAGAGG 61.786 68.421 0.00 0.00 35.37 3.69
2795 2913 2.005960 GACGTGGACGGGGATGAGAG 62.006 65.000 0.00 0.00 44.95 3.20
2796 2914 2.036731 ACGTGGACGGGGATGAGA 59.963 61.111 3.93 0.00 44.95 3.27
2797 2915 2.494918 GACGTGGACGGGGATGAG 59.505 66.667 0.00 0.00 44.95 2.90
2798 2916 3.445687 CGACGTGGACGGGGATGA 61.446 66.667 0.00 0.00 44.95 2.92
2799 2917 3.695022 GACGACGTGGACGGGGATG 62.695 68.421 4.58 0.00 44.95 3.51
2800 2918 3.446570 GACGACGTGGACGGGGAT 61.447 66.667 4.58 0.00 44.95 3.85
2812 2930 2.615262 CTTAGAGCCCTGCCGACGAC 62.615 65.000 0.00 0.00 0.00 4.34
2813 2931 2.361992 TTAGAGCCCTGCCGACGA 60.362 61.111 0.00 0.00 0.00 4.20
2814 2932 2.105128 CTTAGAGCCCTGCCGACG 59.895 66.667 0.00 0.00 0.00 5.12
2815 2933 2.501610 CCTTAGAGCCCTGCCGAC 59.498 66.667 0.00 0.00 0.00 4.79
2816 2934 3.470888 GCCTTAGAGCCCTGCCGA 61.471 66.667 0.00 0.00 0.00 5.54
2824 2942 2.189784 GGGGTTCGGCCTTAGAGC 59.810 66.667 0.00 0.00 37.43 4.09
2825 2943 2.499685 CGGGGTTCGGCCTTAGAG 59.500 66.667 0.00 0.00 37.43 2.43
2826 2944 3.777910 GCGGGGTTCGGCCTTAGA 61.778 66.667 0.00 0.00 39.69 2.10
2855 2973 3.330720 GAGTGGGGGTGTGGGGAG 61.331 72.222 0.00 0.00 0.00 4.30
2856 2974 4.194497 TGAGTGGGGGTGTGGGGA 62.194 66.667 0.00 0.00 0.00 4.81
2857 2975 3.966543 GTGAGTGGGGGTGTGGGG 61.967 72.222 0.00 0.00 0.00 4.96
2858 2976 3.966543 GGTGAGTGGGGGTGTGGG 61.967 72.222 0.00 0.00 0.00 4.61
2859 2977 3.966543 GGGTGAGTGGGGGTGTGG 61.967 72.222 0.00 0.00 0.00 4.17
2860 2978 3.966543 GGGGTGAGTGGGGGTGTG 61.967 72.222 0.00 0.00 0.00 3.82
2861 2979 4.202030 AGGGGTGAGTGGGGGTGT 62.202 66.667 0.00 0.00 0.00 4.16
2862 2980 3.330720 GAGGGGTGAGTGGGGGTG 61.331 72.222 0.00 0.00 0.00 4.61
2863 2981 4.677151 GGAGGGGTGAGTGGGGGT 62.677 72.222 0.00 0.00 0.00 4.95
2865 2983 4.675303 TGGGAGGGGTGAGTGGGG 62.675 72.222 0.00 0.00 0.00 4.96
2866 2984 2.847292 ATCTGGGAGGGGTGAGTGGG 62.847 65.000 0.00 0.00 0.00 4.61
2867 2985 1.307343 ATCTGGGAGGGGTGAGTGG 60.307 63.158 0.00 0.00 0.00 4.00
2868 2986 1.341156 GGATCTGGGAGGGGTGAGTG 61.341 65.000 0.00 0.00 0.00 3.51
2869 2987 1.003573 GGATCTGGGAGGGGTGAGT 59.996 63.158 0.00 0.00 0.00 3.41
2870 2988 1.003442 TGGATCTGGGAGGGGTGAG 59.997 63.158 0.00 0.00 0.00 3.51
2871 2989 1.306997 GTGGATCTGGGAGGGGTGA 60.307 63.158 0.00 0.00 0.00 4.02
2872 2990 1.307343 AGTGGATCTGGGAGGGGTG 60.307 63.158 0.00 0.00 0.00 4.61
2873 2991 1.003573 GAGTGGATCTGGGAGGGGT 59.996 63.158 0.00 0.00 0.00 4.95
2874 2992 0.762461 GAGAGTGGATCTGGGAGGGG 60.762 65.000 0.00 0.00 38.84 4.79
2875 2993 0.762461 GGAGAGTGGATCTGGGAGGG 60.762 65.000 0.00 0.00 38.84 4.30
2876 2994 0.762461 GGGAGAGTGGATCTGGGAGG 60.762 65.000 0.00 0.00 38.84 4.30
2877 2995 0.031716 TGGGAGAGTGGATCTGGGAG 60.032 60.000 0.00 0.00 38.84 4.30
2878 2996 0.325671 GTGGGAGAGTGGATCTGGGA 60.326 60.000 0.00 0.00 38.84 4.37
2879 2997 0.326048 AGTGGGAGAGTGGATCTGGG 60.326 60.000 0.00 0.00 38.84 4.45
2880 2998 1.118838 GAGTGGGAGAGTGGATCTGG 58.881 60.000 0.00 0.00 38.84 3.86
2881 2999 1.118838 GGAGTGGGAGAGTGGATCTG 58.881 60.000 0.00 0.00 38.84 2.90
2882 3000 1.014804 AGGAGTGGGAGAGTGGATCT 58.985 55.000 0.00 0.00 42.61 2.75
2883 3001 1.063266 AGAGGAGTGGGAGAGTGGATC 60.063 57.143 0.00 0.00 0.00 3.36
2884 3002 1.014804 AGAGGAGTGGGAGAGTGGAT 58.985 55.000 0.00 0.00 0.00 3.41
2885 3003 0.333312 GAGAGGAGTGGGAGAGTGGA 59.667 60.000 0.00 0.00 0.00 4.02
2886 3004 0.686112 GGAGAGGAGTGGGAGAGTGG 60.686 65.000 0.00 0.00 0.00 4.00
2887 3005 0.686112 GGGAGAGGAGTGGGAGAGTG 60.686 65.000 0.00 0.00 0.00 3.51
2888 3006 0.853586 AGGGAGAGGAGTGGGAGAGT 60.854 60.000 0.00 0.00 0.00 3.24
2889 3007 0.106217 GAGGGAGAGGAGTGGGAGAG 60.106 65.000 0.00 0.00 0.00 3.20
2890 3008 1.585651 GGAGGGAGAGGAGTGGGAGA 61.586 65.000 0.00 0.00 0.00 3.71
2891 3009 1.075600 GGAGGGAGAGGAGTGGGAG 60.076 68.421 0.00 0.00 0.00 4.30
2892 3010 1.547755 AGGAGGGAGAGGAGTGGGA 60.548 63.158 0.00 0.00 0.00 4.37
2893 3011 1.075600 GAGGAGGGAGAGGAGTGGG 60.076 68.421 0.00 0.00 0.00 4.61
2894 3012 1.454847 CGAGGAGGGAGAGGAGTGG 60.455 68.421 0.00 0.00 0.00 4.00
2895 3013 2.124693 GCGAGGAGGGAGAGGAGTG 61.125 68.421 0.00 0.00 0.00 3.51
2896 3014 2.277404 GCGAGGAGGGAGAGGAGT 59.723 66.667 0.00 0.00 0.00 3.85
2897 3015 1.528309 GAGCGAGGAGGGAGAGGAG 60.528 68.421 0.00 0.00 0.00 3.69
2898 3016 2.598467 GAGCGAGGAGGGAGAGGA 59.402 66.667 0.00 0.00 0.00 3.71
2899 3017 2.904866 CGAGCGAGGAGGGAGAGG 60.905 72.222 0.00 0.00 0.00 3.69
2900 3018 2.904866 CCGAGCGAGGAGGGAGAG 60.905 72.222 0.00 0.00 0.00 3.20
2901 3019 3.283812 AACCGAGCGAGGAGGGAGA 62.284 63.158 7.50 0.00 34.73 3.71
2902 3020 2.756283 AACCGAGCGAGGAGGGAG 60.756 66.667 7.50 0.00 34.73 4.30
2903 3021 2.754658 GAACCGAGCGAGGAGGGA 60.755 66.667 7.50 0.00 34.73 4.20
2904 3022 3.839432 GGAACCGAGCGAGGAGGG 61.839 72.222 7.50 0.00 34.73 4.30
2905 3023 3.068691 TGGAACCGAGCGAGGAGG 61.069 66.667 7.50 0.00 34.73 4.30
2906 3024 1.878656 AAGTGGAACCGAGCGAGGAG 61.879 60.000 7.50 0.00 37.80 3.69
2907 3025 1.874345 GAAGTGGAACCGAGCGAGGA 61.874 60.000 7.50 0.00 37.80 3.71
2908 3026 1.446272 GAAGTGGAACCGAGCGAGG 60.446 63.158 0.00 0.00 37.80 4.63
2909 3027 1.009389 GTGAAGTGGAACCGAGCGAG 61.009 60.000 0.00 0.00 37.80 5.03
2910 3028 1.006571 GTGAAGTGGAACCGAGCGA 60.007 57.895 0.00 0.00 37.80 4.93
2911 3029 1.300620 TGTGAAGTGGAACCGAGCG 60.301 57.895 0.00 0.00 37.80 5.03
2912 3030 1.228657 GGTGTGAAGTGGAACCGAGC 61.229 60.000 0.00 0.00 37.80 5.03
2913 3031 0.105964 TGGTGTGAAGTGGAACCGAG 59.894 55.000 0.00 0.00 37.80 4.63
2914 3032 0.179067 GTGGTGTGAAGTGGAACCGA 60.179 55.000 0.00 0.00 37.80 4.69
2915 3033 0.462937 TGTGGTGTGAAGTGGAACCG 60.463 55.000 0.00 0.00 37.80 4.44
2916 3034 1.308998 CTGTGGTGTGAAGTGGAACC 58.691 55.000 0.00 0.00 37.80 3.62
2917 3035 0.663153 GCTGTGGTGTGAAGTGGAAC 59.337 55.000 0.00 0.00 0.00 3.62
2918 3036 0.465460 GGCTGTGGTGTGAAGTGGAA 60.465 55.000 0.00 0.00 0.00 3.53
2919 3037 1.148273 GGCTGTGGTGTGAAGTGGA 59.852 57.895 0.00 0.00 0.00 4.02
2920 3038 1.152984 TGGCTGTGGTGTGAAGTGG 60.153 57.895 0.00 0.00 0.00 4.00
2921 3039 1.447317 GGTGGCTGTGGTGTGAAGTG 61.447 60.000 0.00 0.00 0.00 3.16
2922 3040 1.152963 GGTGGCTGTGGTGTGAAGT 60.153 57.895 0.00 0.00 0.00 3.01
2923 3041 1.898574 GGGTGGCTGTGGTGTGAAG 60.899 63.158 0.00 0.00 0.00 3.02
2924 3042 2.194597 GGGTGGCTGTGGTGTGAA 59.805 61.111 0.00 0.00 0.00 3.18
2925 3043 3.884774 GGGGTGGCTGTGGTGTGA 61.885 66.667 0.00 0.00 0.00 3.58
2926 3044 4.202574 TGGGGTGGCTGTGGTGTG 62.203 66.667 0.00 0.00 0.00 3.82
2927 3045 4.204028 GTGGGGTGGCTGTGGTGT 62.204 66.667 0.00 0.00 0.00 4.16
2936 3054 3.646715 ATGGTGGTCGTGGGGTGG 61.647 66.667 0.00 0.00 0.00 4.61
2937 3055 2.359850 CATGGTGGTCGTGGGGTG 60.360 66.667 0.00 0.00 0.00 4.61
2938 3056 2.528127 TCATGGTGGTCGTGGGGT 60.528 61.111 0.00 0.00 33.31 4.95
2939 3057 2.046314 GTCATGGTGGTCGTGGGG 60.046 66.667 0.00 0.00 33.31 4.96
2940 3058 2.046314 GGTCATGGTGGTCGTGGG 60.046 66.667 0.00 0.00 33.31 4.61
2941 3059 2.434185 CGGTCATGGTGGTCGTGG 60.434 66.667 0.00 0.00 33.31 4.94
2942 3060 3.118454 GCGGTCATGGTGGTCGTG 61.118 66.667 0.00 0.00 0.00 4.35
2943 3061 4.735132 CGCGGTCATGGTGGTCGT 62.735 66.667 0.00 0.00 0.00 4.34
2945 3063 4.388499 ACCGCGGTCATGGTGGTC 62.388 66.667 28.70 0.00 44.67 4.02
2990 3108 3.532155 ATGGAGACGAGGCGAGGC 61.532 66.667 0.00 0.00 0.00 4.70
2991 3109 2.415010 CATGGAGACGAGGCGAGG 59.585 66.667 0.00 0.00 0.00 4.63
2992 3110 2.279120 GCATGGAGACGAGGCGAG 60.279 66.667 0.00 0.00 0.00 5.03
2993 3111 2.904178 TAGGCATGGAGACGAGGCGA 62.904 60.000 0.00 0.00 37.36 5.54
2994 3112 2.413437 CTAGGCATGGAGACGAGGCG 62.413 65.000 0.00 0.00 37.36 5.52
2995 3113 1.365633 CTAGGCATGGAGACGAGGC 59.634 63.158 0.00 0.00 0.00 4.70
2996 3114 0.671251 GACTAGGCATGGAGACGAGG 59.329 60.000 0.00 0.00 31.22 4.63
2997 3115 0.309302 CGACTAGGCATGGAGACGAG 59.691 60.000 0.00 0.00 33.60 4.18
2998 3116 0.107361 TCGACTAGGCATGGAGACGA 60.107 55.000 0.00 0.00 37.49 4.20
2999 3117 0.738975 TTCGACTAGGCATGGAGACG 59.261 55.000 0.00 0.00 33.17 4.18
3000 3118 1.202428 GGTTCGACTAGGCATGGAGAC 60.202 57.143 0.00 0.00 0.00 3.36
3001 3119 1.112113 GGTTCGACTAGGCATGGAGA 58.888 55.000 0.00 0.00 0.00 3.71
3002 3120 0.249073 CGGTTCGACTAGGCATGGAG 60.249 60.000 0.00 0.00 0.00 3.86
3003 3121 1.813859 CGGTTCGACTAGGCATGGA 59.186 57.895 0.00 0.00 0.00 3.41
3004 3122 1.883084 GCGGTTCGACTAGGCATGG 60.883 63.158 0.00 0.00 0.00 3.66
3005 3123 1.883084 GGCGGTTCGACTAGGCATG 60.883 63.158 0.00 0.00 0.00 4.06
3006 3124 2.499685 GGCGGTTCGACTAGGCAT 59.500 61.111 0.00 0.00 0.00 4.40
3007 3125 4.124351 CGGCGGTTCGACTAGGCA 62.124 66.667 0.00 0.00 29.68 4.75
3008 3126 4.125695 ACGGCGGTTCGACTAGGC 62.126 66.667 13.24 0.00 29.68 3.93
3009 3127 2.001361 ATGACGGCGGTTCGACTAGG 62.001 60.000 13.24 0.00 29.68 3.02
3010 3128 0.591741 GATGACGGCGGTTCGACTAG 60.592 60.000 13.24 0.00 29.68 2.57
3011 3129 1.430632 GATGACGGCGGTTCGACTA 59.569 57.895 13.24 0.00 29.68 2.59
3012 3130 2.181021 GATGACGGCGGTTCGACT 59.819 61.111 13.24 0.00 29.68 4.18
3013 3131 2.884207 GGATGACGGCGGTTCGAC 60.884 66.667 13.24 0.00 0.00 4.20
3014 3132 3.375239 TGGATGACGGCGGTTCGA 61.375 61.111 13.24 0.00 0.00 3.71
3015 3133 2.274232 TAGTGGATGACGGCGGTTCG 62.274 60.000 13.24 0.00 0.00 3.95
3016 3134 0.804933 GTAGTGGATGACGGCGGTTC 60.805 60.000 13.24 4.54 0.00 3.62
3017 3135 1.217244 GTAGTGGATGACGGCGGTT 59.783 57.895 13.24 0.00 0.00 4.44
3018 3136 2.718073 GGTAGTGGATGACGGCGGT 61.718 63.158 13.24 0.00 0.00 5.68
3019 3137 2.106332 GGTAGTGGATGACGGCGG 59.894 66.667 13.24 0.00 0.00 6.13
3020 3138 1.065928 GAGGTAGTGGATGACGGCG 59.934 63.158 4.80 4.80 0.00 6.46
3021 3139 0.824759 AAGAGGTAGTGGATGACGGC 59.175 55.000 0.00 0.00 0.00 5.68
3022 3140 1.409427 GGAAGAGGTAGTGGATGACGG 59.591 57.143 0.00 0.00 0.00 4.79
3023 3141 2.100197 TGGAAGAGGTAGTGGATGACG 58.900 52.381 0.00 0.00 0.00 4.35
3024 3142 2.159226 CGTGGAAGAGGTAGTGGATGAC 60.159 54.545 0.00 0.00 0.00 3.06
3025 3143 2.100197 CGTGGAAGAGGTAGTGGATGA 58.900 52.381 0.00 0.00 0.00 2.92
3026 3144 1.471676 GCGTGGAAGAGGTAGTGGATG 60.472 57.143 0.00 0.00 0.00 3.51
3027 3145 0.824759 GCGTGGAAGAGGTAGTGGAT 59.175 55.000 0.00 0.00 0.00 3.41
3028 3146 0.541063 TGCGTGGAAGAGGTAGTGGA 60.541 55.000 0.00 0.00 0.00 4.02
3029 3147 0.320374 TTGCGTGGAAGAGGTAGTGG 59.680 55.000 0.00 0.00 0.00 4.00
3030 3148 1.798813 GTTTGCGTGGAAGAGGTAGTG 59.201 52.381 0.00 0.00 0.00 2.74
3031 3149 1.604693 CGTTTGCGTGGAAGAGGTAGT 60.605 52.381 0.00 0.00 0.00 2.73
3032 3150 1.068474 CGTTTGCGTGGAAGAGGTAG 58.932 55.000 0.00 0.00 0.00 3.18
3033 3151 0.675083 TCGTTTGCGTGGAAGAGGTA 59.325 50.000 0.00 0.00 39.49 3.08
3034 3152 0.179067 TTCGTTTGCGTGGAAGAGGT 60.179 50.000 0.00 0.00 39.49 3.85
3035 3153 1.156736 ATTCGTTTGCGTGGAAGAGG 58.843 50.000 0.00 0.00 39.49 3.69
3036 3154 2.574322 CAATTCGTTTGCGTGGAAGAG 58.426 47.619 0.00 0.00 39.49 2.85
3037 3155 1.265635 CCAATTCGTTTGCGTGGAAGA 59.734 47.619 0.00 0.00 34.81 2.87
3038 3156 1.265635 TCCAATTCGTTTGCGTGGAAG 59.734 47.619 0.00 0.00 37.69 3.46
3039 3157 1.265635 CTCCAATTCGTTTGCGTGGAA 59.734 47.619 0.00 0.00 39.30 3.53
3040 3158 0.871722 CTCCAATTCGTTTGCGTGGA 59.128 50.000 0.00 0.00 38.10 4.02
3041 3159 0.729140 GCTCCAATTCGTTTGCGTGG 60.729 55.000 0.00 0.00 39.49 4.94
3042 3160 0.729140 GGCTCCAATTCGTTTGCGTG 60.729 55.000 0.00 0.00 39.49 5.34
3043 3161 1.579429 GGCTCCAATTCGTTTGCGT 59.421 52.632 0.00 0.00 39.49 5.24
3044 3162 1.511887 CGGCTCCAATTCGTTTGCG 60.512 57.895 0.00 0.00 39.92 4.85
3045 3163 1.154035 CCGGCTCCAATTCGTTTGC 60.154 57.895 0.00 0.00 33.73 3.68
3046 3164 0.958382 TCCCGGCTCCAATTCGTTTG 60.958 55.000 0.00 0.00 34.93 2.93
3047 3165 0.676782 CTCCCGGCTCCAATTCGTTT 60.677 55.000 0.00 0.00 0.00 3.60
3048 3166 1.078426 CTCCCGGCTCCAATTCGTT 60.078 57.895 0.00 0.00 0.00 3.85
3049 3167 2.584608 CTCCCGGCTCCAATTCGT 59.415 61.111 0.00 0.00 0.00 3.85
3050 3168 2.897350 GCTCCCGGCTCCAATTCG 60.897 66.667 0.00 0.00 38.06 3.34
3051 3169 2.517166 GGCTCCCGGCTCCAATTC 60.517 66.667 0.00 0.00 41.46 2.17
3052 3170 3.338250 TGGCTCCCGGCTCCAATT 61.338 61.111 0.00 0.00 41.46 2.32
3053 3171 4.115199 GTGGCTCCCGGCTCCAAT 62.115 66.667 8.80 0.00 41.46 3.16
3081 3199 2.907897 GAAGAGGACGGCGTCATGGG 62.908 65.000 37.13 0.00 33.68 4.00
3082 3200 1.519455 GAAGAGGACGGCGTCATGG 60.519 63.158 37.13 0.00 33.68 3.66
3083 3201 1.519455 GGAAGAGGACGGCGTCATG 60.519 63.158 37.13 0.00 33.68 3.07
3084 3202 1.668101 GAGGAAGAGGACGGCGTCAT 61.668 60.000 37.13 33.17 33.68 3.06
3085 3203 2.282958 AGGAAGAGGACGGCGTCA 60.283 61.111 37.13 0.00 33.68 4.35
3086 3204 2.490685 GAGGAAGAGGACGGCGTC 59.509 66.667 30.72 30.72 0.00 5.19
3087 3205 3.441290 CGAGGAAGAGGACGGCGT 61.441 66.667 14.65 14.65 0.00 5.68
3088 3206 4.194720 CCGAGGAAGAGGACGGCG 62.195 72.222 4.80 4.80 38.98 6.46
3090 3208 3.839432 GGCCGAGGAAGAGGACGG 61.839 72.222 0.00 0.00 46.74 4.79
3091 3209 2.756283 AGGCCGAGGAAGAGGACG 60.756 66.667 0.00 0.00 41.45 4.79
3092 3210 2.776913 CGAGGCCGAGGAAGAGGAC 61.777 68.421 0.00 0.00 38.22 3.85
3093 3211 2.440430 CGAGGCCGAGGAAGAGGA 60.440 66.667 0.00 0.00 38.22 3.71
3094 3212 4.214327 GCGAGGCCGAGGAAGAGG 62.214 72.222 0.00 0.00 38.22 3.69
3095 3213 1.791103 CTAGCGAGGCCGAGGAAGAG 61.791 65.000 0.00 0.00 38.22 2.85
3096 3214 1.824329 CTAGCGAGGCCGAGGAAGA 60.824 63.158 0.00 0.00 38.22 2.87
3097 3215 2.725008 CTAGCGAGGCCGAGGAAG 59.275 66.667 0.00 0.00 38.22 3.46
3098 3216 3.528370 GCTAGCGAGGCCGAGGAA 61.528 66.667 0.00 0.00 38.22 3.36
3099 3217 4.815108 TGCTAGCGAGGCCGAGGA 62.815 66.667 10.77 0.00 38.22 3.71
3100 3218 3.371097 TTTGCTAGCGAGGCCGAGG 62.371 63.158 10.77 0.00 38.22 4.63
3101 3219 2.167861 GTTTGCTAGCGAGGCCGAG 61.168 63.158 10.77 0.00 38.22 4.63
3102 3220 2.125673 GTTTGCTAGCGAGGCCGA 60.126 61.111 10.77 0.00 38.22 5.54
3103 3221 3.195698 GGTTTGCTAGCGAGGCCG 61.196 66.667 10.77 0.00 39.16 6.13
3104 3222 2.824489 GGGTTTGCTAGCGAGGCC 60.824 66.667 10.77 13.72 0.00 5.19
3105 3223 2.824489 GGGGTTTGCTAGCGAGGC 60.824 66.667 10.77 5.21 0.00 4.70
3106 3224 0.815615 GATGGGGTTTGCTAGCGAGG 60.816 60.000 10.77 0.00 0.00 4.63
3107 3225 0.107703 TGATGGGGTTTGCTAGCGAG 60.108 55.000 10.77 0.00 0.00 5.03
3108 3226 0.326595 TTGATGGGGTTTGCTAGCGA 59.673 50.000 10.77 5.12 0.00 4.93
3109 3227 1.392589 ATTGATGGGGTTTGCTAGCG 58.607 50.000 10.77 0.00 0.00 4.26
3110 3228 3.026694 AGAATTGATGGGGTTTGCTAGC 58.973 45.455 8.10 8.10 0.00 3.42
3111 3229 3.382546 CCAGAATTGATGGGGTTTGCTAG 59.617 47.826 0.00 0.00 33.94 3.42
3112 3230 3.364549 CCAGAATTGATGGGGTTTGCTA 58.635 45.455 0.00 0.00 33.94 3.49
3113 3231 2.181975 CCAGAATTGATGGGGTTTGCT 58.818 47.619 0.00 0.00 33.94 3.91
3114 3232 1.405933 GCCAGAATTGATGGGGTTTGC 60.406 52.381 8.09 0.00 38.33 3.68
3115 3233 1.135024 CGCCAGAATTGATGGGGTTTG 60.135 52.381 12.79 0.00 43.75 2.93
3116 3234 1.185315 CGCCAGAATTGATGGGGTTT 58.815 50.000 12.79 0.00 43.75 3.27
3117 3235 2.886382 CGCCAGAATTGATGGGGTT 58.114 52.632 12.79 0.00 43.75 4.11
3118 3236 4.664062 CGCCAGAATTGATGGGGT 57.336 55.556 12.79 0.00 43.75 4.95
3120 3238 1.111116 ATGGCGCCAGAATTGATGGG 61.111 55.000 35.36 1.13 38.33 4.00
3121 3239 0.313043 GATGGCGCCAGAATTGATGG 59.687 55.000 35.36 2.44 41.04 3.51
3122 3240 1.001706 CAGATGGCGCCAGAATTGATG 60.002 52.381 35.36 19.32 0.00 3.07
3123 3241 1.315690 CAGATGGCGCCAGAATTGAT 58.684 50.000 35.36 16.61 0.00 2.57
3124 3242 1.378882 GCAGATGGCGCCAGAATTGA 61.379 55.000 35.36 9.43 0.00 2.57
3125 3243 1.065273 GCAGATGGCGCCAGAATTG 59.935 57.895 35.36 26.92 0.00 2.32
3126 3244 3.518003 GCAGATGGCGCCAGAATT 58.482 55.556 35.36 18.79 0.00 2.17
3135 3253 1.587547 GGTTAGTAGCTGCAGATGGC 58.412 55.000 20.43 9.17 45.13 4.40
3136 3254 1.765314 AGGGTTAGTAGCTGCAGATGG 59.235 52.381 20.43 0.00 0.00 3.51
3137 3255 2.224161 GGAGGGTTAGTAGCTGCAGATG 60.224 54.545 20.43 0.00 0.00 2.90
3138 3256 2.043227 GGAGGGTTAGTAGCTGCAGAT 58.957 52.381 20.43 15.46 0.00 2.90
3139 3257 1.486211 GGAGGGTTAGTAGCTGCAGA 58.514 55.000 20.43 0.00 0.00 4.26
3140 3258 0.103208 CGGAGGGTTAGTAGCTGCAG 59.897 60.000 10.11 10.11 0.00 4.41
3141 3259 0.323999 TCGGAGGGTTAGTAGCTGCA 60.324 55.000 4.12 0.00 0.00 4.41
3142 3260 0.102663 GTCGGAGGGTTAGTAGCTGC 59.897 60.000 0.00 0.00 0.00 5.25
3143 3261 0.381089 CGTCGGAGGGTTAGTAGCTG 59.619 60.000 0.00 0.00 0.00 4.24
3144 3262 0.254178 TCGTCGGAGGGTTAGTAGCT 59.746 55.000 0.00 0.00 0.00 3.32
3145 3263 0.662085 CTCGTCGGAGGGTTAGTAGC 59.338 60.000 0.00 0.00 36.61 3.58
3146 3264 0.662085 GCTCGTCGGAGGGTTAGTAG 59.338 60.000 0.00 0.00 40.80 2.57
3147 3265 0.749454 GGCTCGTCGGAGGGTTAGTA 60.749 60.000 0.00 0.00 40.80 1.82
3148 3266 2.050934 GGCTCGTCGGAGGGTTAGT 61.051 63.158 0.00 0.00 40.80 2.24
3149 3267 1.321074 AAGGCTCGTCGGAGGGTTAG 61.321 60.000 0.00 0.00 40.80 2.34
3150 3268 0.901580 AAAGGCTCGTCGGAGGGTTA 60.902 55.000 0.00 0.00 40.80 2.85
3151 3269 2.168666 GAAAGGCTCGTCGGAGGGTT 62.169 60.000 0.00 0.00 40.80 4.11
3152 3270 2.603776 AAAGGCTCGTCGGAGGGT 60.604 61.111 0.00 0.00 40.80 4.34
3153 3271 1.889530 AAGAAAGGCTCGTCGGAGGG 61.890 60.000 0.00 0.00 40.80 4.30
3154 3272 0.737715 CAAGAAAGGCTCGTCGGAGG 60.738 60.000 0.00 0.00 40.80 4.30
3155 3273 1.355066 GCAAGAAAGGCTCGTCGGAG 61.355 60.000 0.00 0.00 43.46 4.63
3156 3274 1.374252 GCAAGAAAGGCTCGTCGGA 60.374 57.895 0.00 0.00 0.00 4.55
3157 3275 2.730672 CGCAAGAAAGGCTCGTCGG 61.731 63.158 0.00 0.00 43.02 4.79
3158 3276 2.772189 CGCAAGAAAGGCTCGTCG 59.228 61.111 0.00 0.00 43.02 5.12
3159 3277 1.960994 GAGCGCAAGAAAGGCTCGTC 61.961 60.000 11.47 0.00 43.10 4.20
3160 3278 2.029844 GAGCGCAAGAAAGGCTCGT 61.030 57.895 11.47 0.00 43.10 4.18
3161 3279 2.781300 GAGCGCAAGAAAGGCTCG 59.219 61.111 11.47 0.00 43.10 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.