Multiple sequence alignment - TraesCS6A01G148900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G148900 chr6A 100.000 3047 0 0 1 3047 130411817 130414863 0.000000e+00 5627
1 TraesCS6A01G148900 chr6A 96.465 198 7 0 1 198 177830754 177830951 8.150000e-86 327
2 TraesCS6A01G148900 chr6A 94.286 210 12 0 1 210 52112813 52113022 3.790000e-84 322
3 TraesCS6A01G148900 chr6D 95.840 1779 53 12 652 2424 106951386 106953149 0.000000e+00 2856
4 TraesCS6A01G148900 chr6D 93.109 653 20 6 2412 3047 106953371 106954015 0.000000e+00 933
5 TraesCS6A01G148900 chr6D 93.289 447 29 1 194 640 106946317 106946762 0.000000e+00 658
6 TraesCS6A01G148900 chr5B 88.203 1441 103 32 776 2180 467019158 467020567 0.000000e+00 1657
7 TraesCS6A01G148900 chr5B 87.168 1091 99 21 989 2054 465053843 465054917 0.000000e+00 1201
8 TraesCS6A01G148900 chr5B 90.353 425 28 5 2614 3032 466970030 466970447 2.070000e-151 545
9 TraesCS6A01G148900 chr5B 82.526 578 62 22 194 745 467018444 467019008 3.560000e-129 472
10 TraesCS6A01G148900 chr5B 95.789 95 3 1 2614 2707 466951365 466951459 5.260000e-33 152
11 TraesCS6A01G148900 chr5D 87.818 1453 108 37 771 2181 388380537 388381962 0.000000e+00 1639
12 TraesCS6A01G148900 chr5D 88.705 1266 83 22 989 2212 388411811 388413058 0.000000e+00 1491
13 TraesCS6A01G148900 chr5D 85.569 1372 94 45 853 2181 388591789 388593099 0.000000e+00 1341
14 TraesCS6A01G148900 chr5D 87.904 1083 96 14 989 2055 386958425 386959488 0.000000e+00 1242
15 TraesCS6A01G148900 chr5D 86.752 1170 87 19 989 2127 353953843 353954975 0.000000e+00 1240
16 TraesCS6A01G148900 chr5D 86.364 1078 104 18 989 2052 370777564 370778612 0.000000e+00 1136
17 TraesCS6A01G148900 chr5D 89.461 427 29 6 2614 3040 388430277 388430687 2.690000e-145 525
18 TraesCS6A01G148900 chr5D 86.590 261 13 6 2780 3040 388327515 388327753 5.010000e-68 268
19 TraesCS6A01G148900 chr5A 88.699 1053 91 14 989 2027 491584008 491585046 0.000000e+00 1260
20 TraesCS6A01G148900 chr5A 86.255 1084 104 19 989 2054 489661507 489662563 0.000000e+00 1134
21 TraesCS6A01G148900 chr5A 90.205 684 34 11 791 1452 491568691 491569363 0.000000e+00 861
22 TraesCS6A01G148900 chr5A 92.154 599 34 4 198 791 491568027 491568617 0.000000e+00 833
23 TraesCS6A01G148900 chr5A 87.517 737 47 15 1491 2204 491569364 491570078 0.000000e+00 809
24 TraesCS6A01G148900 chr5A 90.857 350 26 3 2614 2957 491315054 491315403 5.950000e-127 464
25 TraesCS6A01G148900 chr5A 95.545 202 8 1 1 202 67302834 67303034 3.790000e-84 322
26 TraesCS6A01G148900 chr5A 82.741 197 21 5 2844 3040 491319698 491319881 2.430000e-36 163
27 TraesCS6A01G148900 chr7B 87.076 1091 88 14 989 2054 456502678 456501616 0.000000e+00 1184
28 TraesCS6A01G148900 chr7B 88.889 135 9 5 2168 2300 456501562 456501432 8.740000e-36 161
29 TraesCS6A01G148900 chr4A 89.298 598 49 5 194 791 45870272 45870854 0.000000e+00 736
30 TraesCS6A01G148900 chr4A 84.380 685 34 33 776 1447 45870903 45871527 3.360000e-169 604
31 TraesCS6A01G148900 chr4A 85.199 554 46 19 1491 2038 45871533 45872056 1.240000e-148 536
32 TraesCS6A01G148900 chr4A 95.980 199 8 0 1 199 474834023 474833825 1.050000e-84 324
33 TraesCS6A01G148900 chr4A 94.712 208 8 3 1 205 99807776 99807569 1.360000e-83 320
34 TraesCS6A01G148900 chr1B 92.037 427 27 2 2614 3040 507471061 507470642 7.270000e-166 593
35 TraesCS6A01G148900 chr1A 96.954 197 6 0 1 197 317790906 317790710 6.300000e-87 331
36 TraesCS6A01G148900 chr1A 95.980 199 8 0 1 199 291440801 291440603 1.050000e-84 324
37 TraesCS6A01G148900 chr3A 96.447 197 7 0 1 197 651486144 651486340 2.930000e-85 326
38 TraesCS6A01G148900 chr3A 97.368 190 5 0 1 190 457198512 457198701 1.050000e-84 324
39 TraesCS6A01G148900 chr1D 92.271 207 7 4 2835 3040 378867173 378866975 4.970000e-73 285
40 TraesCS6A01G148900 chr1D 91.758 182 15 0 2614 2795 378867352 378867171 1.400000e-63 254
41 TraesCS6A01G148900 chr7A 89.706 136 8 5 2167 2300 488086025 488086156 5.220000e-38 169
42 TraesCS6A01G148900 chr7A 88.060 134 10 5 2169 2300 488466057 488466186 1.460000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G148900 chr6A 130411817 130414863 3046 False 5627.000000 5627 100.000000 1 3047 1 chr6A.!!$F2 3046
1 TraesCS6A01G148900 chr6D 106951386 106954015 2629 False 1894.500000 2856 94.474500 652 3047 2 chr6D.!!$F2 2395
2 TraesCS6A01G148900 chr5B 465053843 465054917 1074 False 1201.000000 1201 87.168000 989 2054 1 chr5B.!!$F1 1065
3 TraesCS6A01G148900 chr5B 467018444 467020567 2123 False 1064.500000 1657 85.364500 194 2180 2 chr5B.!!$F4 1986
4 TraesCS6A01G148900 chr5D 388380537 388381962 1425 False 1639.000000 1639 87.818000 771 2181 1 chr5D.!!$F5 1410
5 TraesCS6A01G148900 chr5D 388411811 388413058 1247 False 1491.000000 1491 88.705000 989 2212 1 chr5D.!!$F6 1223
6 TraesCS6A01G148900 chr5D 388591789 388593099 1310 False 1341.000000 1341 85.569000 853 2181 1 chr5D.!!$F8 1328
7 TraesCS6A01G148900 chr5D 386958425 386959488 1063 False 1242.000000 1242 87.904000 989 2055 1 chr5D.!!$F3 1066
8 TraesCS6A01G148900 chr5D 353953843 353954975 1132 False 1240.000000 1240 86.752000 989 2127 1 chr5D.!!$F1 1138
9 TraesCS6A01G148900 chr5D 370777564 370778612 1048 False 1136.000000 1136 86.364000 989 2052 1 chr5D.!!$F2 1063
10 TraesCS6A01G148900 chr5A 491584008 491585046 1038 False 1260.000000 1260 88.699000 989 2027 1 chr5A.!!$F5 1038
11 TraesCS6A01G148900 chr5A 489661507 489662563 1056 False 1134.000000 1134 86.255000 989 2054 1 chr5A.!!$F2 1065
12 TraesCS6A01G148900 chr5A 491568027 491570078 2051 False 834.333333 861 89.958667 198 2204 3 chr5A.!!$F6 2006
13 TraesCS6A01G148900 chr7B 456501432 456502678 1246 True 672.500000 1184 87.982500 989 2300 2 chr7B.!!$R1 1311
14 TraesCS6A01G148900 chr4A 45870272 45872056 1784 False 625.333333 736 86.292333 194 2038 3 chr4A.!!$F1 1844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 400 0.033504 ACGAAGTCCATTGCGACACT 59.966 50.0 0.0 0.0 29.74 3.55 F
1250 1526 0.108615 CCGGTGAAGAAGATGACGCT 60.109 55.0 0.0 0.0 0.00 5.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1452 1728 1.059264 GTCGACGGATTCTTGCTTTCG 59.941 52.381 0.00 0.0 0.0 3.46 R
2617 3329 0.031857 CTGCGCCAAATCCAACAACA 59.968 50.000 4.18 0.0 0.0 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.959658 AGGAAACATAACCATCATTGATTCA 57.040 32.000 0.00 0.00 0.00 2.57
27 28 8.365060 AGGAAACATAACCATCATTGATTCAA 57.635 30.769 0.75 0.75 0.00 2.69
28 29 8.253113 AGGAAACATAACCATCATTGATTCAAC 58.747 33.333 0.15 0.00 0.00 3.18
29 30 7.220683 GGAAACATAACCATCATTGATTCAACG 59.779 37.037 0.15 0.00 0.00 4.10
30 31 7.389803 AACATAACCATCATTGATTCAACGA 57.610 32.000 0.15 0.00 0.00 3.85
31 32 7.019774 ACATAACCATCATTGATTCAACGAG 57.980 36.000 0.15 0.00 0.00 4.18
32 33 4.361451 AACCATCATTGATTCAACGAGC 57.639 40.909 0.15 0.00 0.00 5.03
33 34 3.614092 ACCATCATTGATTCAACGAGCT 58.386 40.909 0.15 0.00 0.00 4.09
34 35 4.769688 ACCATCATTGATTCAACGAGCTA 58.230 39.130 0.15 0.00 0.00 3.32
35 36 4.813161 ACCATCATTGATTCAACGAGCTAG 59.187 41.667 0.15 0.00 0.00 3.42
36 37 4.813161 CCATCATTGATTCAACGAGCTAGT 59.187 41.667 0.15 0.00 0.00 2.57
37 38 5.050499 CCATCATTGATTCAACGAGCTAGTC 60.050 44.000 0.00 0.00 0.00 2.59
38 39 5.072040 TCATTGATTCAACGAGCTAGTCA 57.928 39.130 0.00 0.00 0.00 3.41
39 40 5.478407 TCATTGATTCAACGAGCTAGTCAA 58.522 37.500 0.00 0.17 0.00 3.18
40 41 5.578336 TCATTGATTCAACGAGCTAGTCAAG 59.422 40.000 0.00 0.00 0.00 3.02
41 42 4.521130 TGATTCAACGAGCTAGTCAAGT 57.479 40.909 0.00 0.00 0.00 3.16
42 43 5.638596 TGATTCAACGAGCTAGTCAAGTA 57.361 39.130 0.00 0.00 0.00 2.24
43 44 5.641709 TGATTCAACGAGCTAGTCAAGTAG 58.358 41.667 0.00 0.00 0.00 2.57
44 45 5.414765 TGATTCAACGAGCTAGTCAAGTAGA 59.585 40.000 0.00 0.00 0.00 2.59
45 46 4.948608 TCAACGAGCTAGTCAAGTAGAG 57.051 45.455 0.00 0.00 0.00 2.43
46 47 3.690139 TCAACGAGCTAGTCAAGTAGAGG 59.310 47.826 0.00 0.00 0.00 3.69
47 48 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
48 49 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
49 50 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
50 51 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
51 52 4.319911 CGAGCTAGTCAAGTAGAGGCATAC 60.320 50.000 0.00 0.00 0.00 2.39
52 53 4.798882 AGCTAGTCAAGTAGAGGCATACT 58.201 43.478 0.00 0.00 37.61 2.12
53 54 5.942961 AGCTAGTCAAGTAGAGGCATACTA 58.057 41.667 3.23 0.00 34.90 1.82
54 55 6.001460 AGCTAGTCAAGTAGAGGCATACTAG 58.999 44.000 0.00 0.00 38.50 2.57
55 56 5.766174 GCTAGTCAAGTAGAGGCATACTAGT 59.234 44.000 0.00 0.00 38.02 2.57
56 57 6.293735 GCTAGTCAAGTAGAGGCATACTAGTG 60.294 46.154 5.39 0.00 38.02 2.74
57 58 5.756918 AGTCAAGTAGAGGCATACTAGTGA 58.243 41.667 5.39 2.59 34.90 3.41
58 59 5.591067 AGTCAAGTAGAGGCATACTAGTGAC 59.409 44.000 17.97 17.97 40.57 3.67
59 60 5.357314 GTCAAGTAGAGGCATACTAGTGACA 59.643 44.000 19.41 0.00 40.28 3.58
60 61 5.357314 TCAAGTAGAGGCATACTAGTGACAC 59.643 44.000 5.39 0.00 34.90 3.67
61 62 5.118729 AGTAGAGGCATACTAGTGACACT 57.881 43.478 13.68 13.68 34.21 3.55
62 63 5.127491 AGTAGAGGCATACTAGTGACACTC 58.873 45.833 12.39 8.31 34.21 3.51
63 64 4.243793 AGAGGCATACTAGTGACACTCT 57.756 45.455 12.39 10.40 0.00 3.24
64 65 4.204012 AGAGGCATACTAGTGACACTCTC 58.796 47.826 12.39 10.41 28.63 3.20
65 66 4.080015 AGAGGCATACTAGTGACACTCTCT 60.080 45.833 12.39 12.50 28.63 3.10
66 67 4.605183 AGGCATACTAGTGACACTCTCTT 58.395 43.478 12.39 0.00 0.00 2.85
67 68 5.020132 AGGCATACTAGTGACACTCTCTTT 58.980 41.667 12.39 0.00 0.00 2.52
68 69 5.105554 AGGCATACTAGTGACACTCTCTTTG 60.106 44.000 12.39 6.28 0.00 2.77
69 70 5.336849 GGCATACTAGTGACACTCTCTTTGT 60.337 44.000 12.39 5.61 0.00 2.83
70 71 5.802956 GCATACTAGTGACACTCTCTTTGTC 59.197 44.000 12.39 0.00 43.22 3.18
71 72 6.349777 GCATACTAGTGACACTCTCTTTGTCT 60.350 42.308 12.39 0.00 43.30 3.41
72 73 7.148222 GCATACTAGTGACACTCTCTTTGTCTA 60.148 40.741 12.39 0.00 43.30 2.59
73 74 8.898761 CATACTAGTGACACTCTCTTTGTCTAT 58.101 37.037 12.39 0.00 43.30 1.98
74 75 7.151999 ACTAGTGACACTCTCTTTGTCTATG 57.848 40.000 12.39 0.00 43.30 2.23
75 76 6.717540 ACTAGTGACACTCTCTTTGTCTATGT 59.282 38.462 12.39 0.00 43.30 2.29
76 77 7.883833 ACTAGTGACACTCTCTTTGTCTATGTA 59.116 37.037 12.39 0.00 43.30 2.29
77 78 7.710676 AGTGACACTCTCTTTGTCTATGTAT 57.289 36.000 1.07 0.00 43.30 2.29
78 79 8.128322 AGTGACACTCTCTTTGTCTATGTATT 57.872 34.615 1.07 0.00 43.30 1.89
79 80 8.247562 AGTGACACTCTCTTTGTCTATGTATTC 58.752 37.037 1.07 0.00 43.30 1.75
80 81 8.029522 GTGACACTCTCTTTGTCTATGTATTCA 58.970 37.037 0.00 0.00 43.30 2.57
81 82 8.029522 TGACACTCTCTTTGTCTATGTATTCAC 58.970 37.037 4.27 0.00 43.30 3.18
82 83 7.896811 ACACTCTCTTTGTCTATGTATTCACA 58.103 34.615 0.00 0.00 39.52 3.58
83 84 7.815068 ACACTCTCTTTGTCTATGTATTCACAC 59.185 37.037 0.00 0.00 37.54 3.82
84 85 7.814587 CACTCTCTTTGTCTATGTATTCACACA 59.185 37.037 0.00 0.00 37.54 3.72
85 86 8.535335 ACTCTCTTTGTCTATGTATTCACACAT 58.465 33.333 0.00 0.00 41.88 3.21
86 87 8.707938 TCTCTTTGTCTATGTATTCACACATG 57.292 34.615 0.00 0.00 39.46 3.21
87 88 8.314021 TCTCTTTGTCTATGTATTCACACATGT 58.686 33.333 0.00 0.00 39.46 3.21
88 89 9.586435 CTCTTTGTCTATGTATTCACACATGTA 57.414 33.333 0.00 0.00 39.46 2.29
89 90 9.366216 TCTTTGTCTATGTATTCACACATGTAC 57.634 33.333 0.00 0.00 39.46 2.90
90 91 9.371136 CTTTGTCTATGTATTCACACATGTACT 57.629 33.333 0.00 0.00 39.46 2.73
100 101 9.607285 GTATTCACACATGTACTAAGTTTTTGG 57.393 33.333 0.00 0.00 0.00 3.28
101 102 7.633193 TTCACACATGTACTAAGTTTTTGGT 57.367 32.000 0.00 0.00 0.00 3.67
102 103 7.633193 TCACACATGTACTAAGTTTTTGGTT 57.367 32.000 0.00 0.00 0.00 3.67
103 104 8.734218 TCACACATGTACTAAGTTTTTGGTTA 57.266 30.769 0.00 0.00 0.00 2.85
104 105 9.175312 TCACACATGTACTAAGTTTTTGGTTAA 57.825 29.630 0.00 0.00 0.00 2.01
105 106 9.959749 CACACATGTACTAAGTTTTTGGTTAAT 57.040 29.630 0.00 0.00 0.00 1.40
183 184 8.507524 AACAACTTTATTATTGTCTCTAGGGC 57.492 34.615 0.00 0.00 38.08 5.19
184 185 7.630082 ACAACTTTATTATTGTCTCTAGGGCA 58.370 34.615 0.00 0.00 33.80 5.36
185 186 8.275040 ACAACTTTATTATTGTCTCTAGGGCAT 58.725 33.333 0.00 0.00 33.80 4.40
186 187 9.778741 CAACTTTATTATTGTCTCTAGGGCATA 57.221 33.333 0.00 0.00 0.00 3.14
195 196 4.968719 TGTCTCTAGGGCATATTTTCTCCA 59.031 41.667 0.00 0.00 0.00 3.86
200 201 3.837355 AGGGCATATTTTCTCCACATCC 58.163 45.455 0.00 0.00 0.00 3.51
241 242 1.770658 CTCTATCCCATTGCTGGTGGA 59.229 52.381 4.47 0.00 41.37 4.02
288 296 0.536687 TCTTGGTGAGACGTCGTCCT 60.537 55.000 21.40 9.21 32.18 3.85
326 334 1.299976 GGACCCGGAGCTTCATGTT 59.700 57.895 0.73 0.00 0.00 2.71
390 400 0.033504 ACGAAGTCCATTGCGACACT 59.966 50.000 0.00 0.00 29.74 3.55
396 406 0.175760 TCCATTGCGACACTAGAGCC 59.824 55.000 0.00 0.00 0.00 4.70
488 504 2.283529 ACACACCTACCCTGCTCCG 61.284 63.158 0.00 0.00 0.00 4.63
495 511 2.017559 CTACCCTGCTCCGGCTACAC 62.018 65.000 0.00 0.00 39.59 2.90
573 596 2.544903 CCCGTGGTTTTCAATTCGCTTT 60.545 45.455 0.00 0.00 0.00 3.51
615 638 9.521503 TCATAAAATTTGAAATTTGTGTCGACA 57.478 25.926 15.76 15.76 31.85 4.35
712 737 5.126061 GGCATTGTAATGAATGACTGGACTT 59.874 40.000 8.70 0.00 38.21 3.01
834 996 4.686091 TGCTGAAACTGACTCGAAATGTAG 59.314 41.667 0.00 0.00 0.00 2.74
835 997 4.686554 GCTGAAACTGACTCGAAATGTAGT 59.313 41.667 0.00 0.00 0.00 2.73
836 998 5.862323 GCTGAAACTGACTCGAAATGTAGTA 59.138 40.000 0.00 0.00 0.00 1.82
929 1102 2.662006 TGCCTTGAGTCGATCTTCTG 57.338 50.000 0.00 0.00 0.00 3.02
947 1124 1.136147 GCAGCGCACTTCCAATCTG 59.864 57.895 11.47 0.00 0.00 2.90
969 1151 1.149711 CCCATCATCTCCTCTCCTCCT 59.850 57.143 0.00 0.00 0.00 3.69
1099 1333 1.079543 CAGCGGTTCCAGTCAGAGG 60.080 63.158 0.00 0.00 0.00 3.69
1250 1526 0.108615 CCGGTGAAGAAGATGACGCT 60.109 55.000 0.00 0.00 0.00 5.07
1452 1728 1.204312 GCTGGACAAGTTCGTTCGC 59.796 57.895 0.00 0.00 0.00 4.70
1575 1893 2.426023 GTCAGGCCGACACCAGTT 59.574 61.111 18.80 0.00 44.69 3.16
1918 2290 2.672996 ATCAGCACAACACGGCCC 60.673 61.111 0.00 0.00 0.00 5.80
2086 2523 5.488645 TGTGATCGTCGTAGCTTGTAATA 57.511 39.130 0.00 0.00 0.00 0.98
2088 2525 5.065602 TGTGATCGTCGTAGCTTGTAATACT 59.934 40.000 0.00 0.00 0.00 2.12
2089 2526 5.395778 GTGATCGTCGTAGCTTGTAATACTG 59.604 44.000 0.00 0.00 0.00 2.74
2165 2619 2.192664 AGTTCGAGTCTCAGCTCAGA 57.807 50.000 0.00 0.00 35.33 3.27
2244 2703 3.788227 TTGGTTGCCATCTTGTCTACT 57.212 42.857 0.00 0.00 31.53 2.57
2286 2745 2.147150 GTTGTTCTTGAGGCCTCAGAC 58.853 52.381 33.16 29.24 41.13 3.51
2321 2780 5.684813 GCAGAAAAAGAAGGGACATTTTGGT 60.685 40.000 0.00 0.00 0.00 3.67
2328 2787 4.838959 GACATTTTGGTCCGTGCG 57.161 55.556 0.00 0.00 0.00 5.34
2329 2788 1.946267 GACATTTTGGTCCGTGCGT 59.054 52.632 0.00 0.00 0.00 5.24
2330 2789 0.385473 GACATTTTGGTCCGTGCGTG 60.385 55.000 0.00 0.00 0.00 5.34
2331 2790 1.098712 ACATTTTGGTCCGTGCGTGT 61.099 50.000 0.00 0.00 0.00 4.49
2332 2791 0.869068 CATTTTGGTCCGTGCGTGTA 59.131 50.000 0.00 0.00 0.00 2.90
2333 2792 1.136085 CATTTTGGTCCGTGCGTGTAG 60.136 52.381 0.00 0.00 0.00 2.74
2334 2793 0.179078 TTTTGGTCCGTGCGTGTAGT 60.179 50.000 0.00 0.00 0.00 2.73
2336 2795 0.889994 TTGGTCCGTGCGTGTAGTAT 59.110 50.000 0.00 0.00 0.00 2.12
2337 2796 0.889994 TGGTCCGTGCGTGTAGTATT 59.110 50.000 0.00 0.00 0.00 1.89
2338 2797 2.090760 TGGTCCGTGCGTGTAGTATTA 58.909 47.619 0.00 0.00 0.00 0.98
2339 2798 2.689471 TGGTCCGTGCGTGTAGTATTAT 59.311 45.455 0.00 0.00 0.00 1.28
2340 2799 3.243168 TGGTCCGTGCGTGTAGTATTATC 60.243 47.826 0.00 0.00 0.00 1.75
2349 2811 7.096925 CGTGCGTGTAGTATTATCGTTTTATCA 60.097 37.037 0.00 0.00 0.00 2.15
2468 3164 1.934220 GACGCGTGTGGAGGAGATCA 61.934 60.000 20.70 0.00 0.00 2.92
2474 3170 2.457598 GTGTGGAGGAGATCAGGTACA 58.542 52.381 0.00 0.00 0.00 2.90
2491 3187 1.878953 ACACCACCTGTTCGATGAAC 58.121 50.000 2.80 2.80 42.26 3.18
2500 3196 2.930040 CTGTTCGATGAACTGCCGTAAT 59.070 45.455 10.66 0.00 42.39 1.89
2523 3219 1.742831 TGCGGTGTGATTATTTGCTCC 59.257 47.619 0.00 0.00 0.00 4.70
2573 3269 7.826690 ACTTTATTTATAAGCCGGGCATAATG 58.173 34.615 23.09 17.18 0.00 1.90
2617 3329 2.285977 GACCTGCCGATCGGTATTTTT 58.714 47.619 33.33 14.37 37.65 1.94
2637 3349 0.667184 GTTGTTGGATTTGGCGCAGG 60.667 55.000 10.83 0.00 0.00 4.85
2725 3437 5.841957 ATTCTGTCAAGTTGATAATGGGC 57.158 39.130 9.18 0.00 0.00 5.36
2778 3490 6.051179 ACACTTCCTACTTTTCCCTGATAC 57.949 41.667 0.00 0.00 0.00 2.24
2885 3597 0.608640 TTCTCAGGGCCGAGAAAGTC 59.391 55.000 27.10 0.00 46.45 3.01
2919 3631 4.163458 TCTTTAGGTTCTCCAGTTGTGTGT 59.837 41.667 0.00 0.00 35.89 3.72
2943 3655 0.464036 TCGTGTCCACTCTTTGCTGT 59.536 50.000 0.00 0.00 0.00 4.40
2957 3669 1.679139 TGCTGTTTGCTTACTGCTGT 58.321 45.000 16.79 0.66 41.75 4.40
2958 3670 1.603802 TGCTGTTTGCTTACTGCTGTC 59.396 47.619 16.79 0.00 41.75 3.51
2959 3671 1.876156 GCTGTTTGCTTACTGCTGTCT 59.124 47.619 0.00 0.00 43.37 3.41
2960 3672 2.350197 GCTGTTTGCTTACTGCTGTCTG 60.350 50.000 0.00 0.00 43.37 3.51
2961 3673 1.603802 TGTTTGCTTACTGCTGTCTGC 59.396 47.619 0.00 6.71 43.37 4.26
2962 3674 1.876156 GTTTGCTTACTGCTGTCTGCT 59.124 47.619 17.09 0.00 43.37 4.24
2963 3675 1.516161 TTGCTTACTGCTGTCTGCTG 58.484 50.000 17.09 6.99 44.70 4.41
2964 3676 0.681175 TGCTTACTGCTGTCTGCTGA 59.319 50.000 14.17 0.00 42.27 4.26
2977 3689 4.124970 TGTCTGCTGAATACTGATGATGC 58.875 43.478 0.00 0.00 0.00 3.91
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.473007 TTGAATCAATGATGGTTATGTTTCCTA 57.527 29.630 0.00 0.00 27.31 2.94
3 4 7.220683 CGTTGAATCAATGATGGTTATGTTTCC 59.779 37.037 9.47 0.00 32.66 3.13
4 5 7.967854 TCGTTGAATCAATGATGGTTATGTTTC 59.032 33.333 13.38 0.00 34.89 2.78
5 6 7.825681 TCGTTGAATCAATGATGGTTATGTTT 58.174 30.769 13.38 0.00 34.89 2.83
6 7 7.389803 TCGTTGAATCAATGATGGTTATGTT 57.610 32.000 13.38 0.00 34.89 2.71
8 9 5.911280 GCTCGTTGAATCAATGATGGTTATG 59.089 40.000 17.14 6.24 38.47 1.90
9 10 5.824624 AGCTCGTTGAATCAATGATGGTTAT 59.175 36.000 17.14 0.00 38.47 1.89
10 11 5.185454 AGCTCGTTGAATCAATGATGGTTA 58.815 37.500 17.14 0.00 38.47 2.85
11 12 4.012374 AGCTCGTTGAATCAATGATGGTT 58.988 39.130 17.14 3.62 38.47 3.67
12 13 3.614092 AGCTCGTTGAATCAATGATGGT 58.386 40.909 17.14 13.55 38.47 3.55
13 14 4.813161 ACTAGCTCGTTGAATCAATGATGG 59.187 41.667 17.14 8.97 38.47 3.51
14 15 5.521372 TGACTAGCTCGTTGAATCAATGATG 59.479 40.000 17.14 12.44 38.47 3.07
15 16 5.664457 TGACTAGCTCGTTGAATCAATGAT 58.336 37.500 17.14 7.33 38.47 2.45
16 17 5.072040 TGACTAGCTCGTTGAATCAATGA 57.928 39.130 16.09 16.09 37.09 2.57
17 18 5.349817 ACTTGACTAGCTCGTTGAATCAATG 59.650 40.000 8.82 8.82 0.00 2.82
18 19 5.482908 ACTTGACTAGCTCGTTGAATCAAT 58.517 37.500 0.00 0.00 0.00 2.57
19 20 4.883083 ACTTGACTAGCTCGTTGAATCAA 58.117 39.130 0.00 0.00 0.00 2.57
20 21 4.521130 ACTTGACTAGCTCGTTGAATCA 57.479 40.909 0.00 0.00 0.00 2.57
21 22 5.881447 TCTACTTGACTAGCTCGTTGAATC 58.119 41.667 0.00 0.00 0.00 2.52
22 23 5.163602 CCTCTACTTGACTAGCTCGTTGAAT 60.164 44.000 0.00 0.00 0.00 2.57
23 24 4.156190 CCTCTACTTGACTAGCTCGTTGAA 59.844 45.833 0.00 0.00 0.00 2.69
24 25 3.690139 CCTCTACTTGACTAGCTCGTTGA 59.310 47.826 0.00 0.00 0.00 3.18
25 26 3.732471 GCCTCTACTTGACTAGCTCGTTG 60.732 52.174 0.00 0.00 0.00 4.10
26 27 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
27 28 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
28 29 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
29 30 4.825085 AGTATGCCTCTACTTGACTAGCTC 59.175 45.833 0.00 0.00 0.00 4.09
30 31 4.798882 AGTATGCCTCTACTTGACTAGCT 58.201 43.478 0.00 0.00 0.00 3.32
31 32 5.766174 ACTAGTATGCCTCTACTTGACTAGC 59.234 44.000 0.00 0.00 38.86 3.42
32 33 6.993308 TCACTAGTATGCCTCTACTTGACTAG 59.007 42.308 0.00 0.00 40.35 2.57
33 34 6.766944 GTCACTAGTATGCCTCTACTTGACTA 59.233 42.308 0.00 0.00 36.95 2.59
34 35 5.591067 GTCACTAGTATGCCTCTACTTGACT 59.409 44.000 0.00 0.00 36.95 3.41
35 36 5.357314 TGTCACTAGTATGCCTCTACTTGAC 59.643 44.000 0.00 11.98 38.64 3.18
36 37 5.357314 GTGTCACTAGTATGCCTCTACTTGA 59.643 44.000 0.00 0.18 33.96 3.02
37 38 5.358442 AGTGTCACTAGTATGCCTCTACTTG 59.642 44.000 2.87 0.00 33.96 3.16
38 39 5.511363 AGTGTCACTAGTATGCCTCTACTT 58.489 41.667 2.87 0.00 33.96 2.24
39 40 5.104277 AGAGTGTCACTAGTATGCCTCTACT 60.104 44.000 5.21 0.00 36.04 2.57
40 41 5.127491 AGAGTGTCACTAGTATGCCTCTAC 58.873 45.833 5.21 0.00 0.00 2.59
41 42 5.131308 AGAGAGTGTCACTAGTATGCCTCTA 59.869 44.000 13.62 0.00 0.00 2.43
42 43 4.080015 AGAGAGTGTCACTAGTATGCCTCT 60.080 45.833 5.21 8.69 0.00 3.69
43 44 4.204012 AGAGAGTGTCACTAGTATGCCTC 58.796 47.826 5.21 6.49 0.00 4.70
44 45 4.243793 AGAGAGTGTCACTAGTATGCCT 57.756 45.455 5.21 0.00 0.00 4.75
45 46 4.993029 AAGAGAGTGTCACTAGTATGCC 57.007 45.455 5.21 0.00 0.00 4.40
46 47 5.715070 ACAAAGAGAGTGTCACTAGTATGC 58.285 41.667 5.21 0.00 0.00 3.14
47 48 7.151999 AGACAAAGAGAGTGTCACTAGTATG 57.848 40.000 5.21 4.81 46.44 2.39
48 49 8.898761 CATAGACAAAGAGAGTGTCACTAGTAT 58.101 37.037 5.21 0.00 46.44 2.12
49 50 7.883833 ACATAGACAAAGAGAGTGTCACTAGTA 59.116 37.037 5.21 0.00 46.44 1.82
50 51 6.717540 ACATAGACAAAGAGAGTGTCACTAGT 59.282 38.462 5.21 0.00 46.44 2.57
51 52 7.151999 ACATAGACAAAGAGAGTGTCACTAG 57.848 40.000 5.21 0.00 46.44 2.57
52 53 8.809468 ATACATAGACAAAGAGAGTGTCACTA 57.191 34.615 5.21 0.00 46.44 2.74
53 54 7.710676 ATACATAGACAAAGAGAGTGTCACT 57.289 36.000 4.81 4.81 46.44 3.41
54 55 8.029522 TGAATACATAGACAAAGAGAGTGTCAC 58.970 37.037 7.26 0.00 46.44 3.67
55 56 8.029522 GTGAATACATAGACAAAGAGAGTGTCA 58.970 37.037 7.26 0.00 46.44 3.58
56 57 8.029522 TGTGAATACATAGACAAAGAGAGTGTC 58.970 37.037 0.00 0.00 44.75 3.67
57 58 7.815068 GTGTGAATACATAGACAAAGAGAGTGT 59.185 37.037 0.00 0.00 39.39 3.55
58 59 7.814587 TGTGTGAATACATAGACAAAGAGAGTG 59.185 37.037 0.00 0.00 39.39 3.51
59 60 7.896811 TGTGTGAATACATAGACAAAGAGAGT 58.103 34.615 0.00 0.00 39.39 3.24
60 61 8.815189 CATGTGTGAATACATAGACAAAGAGAG 58.185 37.037 0.00 0.00 39.17 3.20
61 62 8.314021 ACATGTGTGAATACATAGACAAAGAGA 58.686 33.333 0.00 0.00 39.17 3.10
62 63 8.484641 ACATGTGTGAATACATAGACAAAGAG 57.515 34.615 0.00 0.00 39.17 2.85
63 64 9.366216 GTACATGTGTGAATACATAGACAAAGA 57.634 33.333 9.11 0.00 39.17 2.52
64 65 9.371136 AGTACATGTGTGAATACATAGACAAAG 57.629 33.333 9.11 0.00 39.17 2.77
74 75 9.607285 CCAAAAACTTAGTACATGTGTGAATAC 57.393 33.333 9.11 0.00 0.00 1.89
75 76 9.344772 ACCAAAAACTTAGTACATGTGTGAATA 57.655 29.630 9.11 0.00 0.00 1.75
76 77 8.232913 ACCAAAAACTTAGTACATGTGTGAAT 57.767 30.769 9.11 0.00 0.00 2.57
77 78 7.633193 ACCAAAAACTTAGTACATGTGTGAA 57.367 32.000 9.11 0.00 0.00 3.18
78 79 7.633193 AACCAAAAACTTAGTACATGTGTGA 57.367 32.000 9.11 0.00 0.00 3.58
79 80 9.959749 ATTAACCAAAAACTTAGTACATGTGTG 57.040 29.630 9.11 0.00 0.00 3.82
157 158 9.609346 GCCCTAGAGACAATAATAAAGTTGTTA 57.391 33.333 0.00 0.00 38.57 2.41
158 159 8.107095 TGCCCTAGAGACAATAATAAAGTTGTT 58.893 33.333 0.00 0.00 38.57 2.83
159 160 7.630082 TGCCCTAGAGACAATAATAAAGTTGT 58.370 34.615 0.00 0.00 40.97 3.32
160 161 8.682936 ATGCCCTAGAGACAATAATAAAGTTG 57.317 34.615 0.00 0.00 0.00 3.16
167 168 9.732130 GAGAAAATATGCCCTAGAGACAATAAT 57.268 33.333 0.00 0.00 0.00 1.28
168 169 8.157476 GGAGAAAATATGCCCTAGAGACAATAA 58.843 37.037 0.00 0.00 0.00 1.40
169 170 7.292356 TGGAGAAAATATGCCCTAGAGACAATA 59.708 37.037 0.00 0.00 0.00 1.90
170 171 6.101734 TGGAGAAAATATGCCCTAGAGACAAT 59.898 38.462 0.00 0.00 0.00 2.71
171 172 5.428457 TGGAGAAAATATGCCCTAGAGACAA 59.572 40.000 0.00 0.00 0.00 3.18
172 173 4.968719 TGGAGAAAATATGCCCTAGAGACA 59.031 41.667 0.00 0.00 0.00 3.41
173 174 5.163301 TGTGGAGAAAATATGCCCTAGAGAC 60.163 44.000 0.00 0.00 0.00 3.36
174 175 4.968719 TGTGGAGAAAATATGCCCTAGAGA 59.031 41.667 0.00 0.00 0.00 3.10
175 176 5.296151 TGTGGAGAAAATATGCCCTAGAG 57.704 43.478 0.00 0.00 0.00 2.43
176 177 5.221925 GGATGTGGAGAAAATATGCCCTAGA 60.222 44.000 0.00 0.00 0.00 2.43
177 178 5.006386 GGATGTGGAGAAAATATGCCCTAG 58.994 45.833 0.00 0.00 0.00 3.02
178 179 4.415179 TGGATGTGGAGAAAATATGCCCTA 59.585 41.667 0.00 0.00 0.00 3.53
179 180 3.205056 TGGATGTGGAGAAAATATGCCCT 59.795 43.478 0.00 0.00 0.00 5.19
180 181 3.565307 TGGATGTGGAGAAAATATGCCC 58.435 45.455 0.00 0.00 0.00 5.36
181 182 3.005155 GCTGGATGTGGAGAAAATATGCC 59.995 47.826 0.00 0.00 0.00 4.40
182 183 3.005155 GGCTGGATGTGGAGAAAATATGC 59.995 47.826 0.00 0.00 0.00 3.14
183 184 4.467769 AGGCTGGATGTGGAGAAAATATG 58.532 43.478 0.00 0.00 0.00 1.78
184 185 4.166725 TGAGGCTGGATGTGGAGAAAATAT 59.833 41.667 0.00 0.00 0.00 1.28
185 186 3.523157 TGAGGCTGGATGTGGAGAAAATA 59.477 43.478 0.00 0.00 0.00 1.40
186 187 2.309755 TGAGGCTGGATGTGGAGAAAAT 59.690 45.455 0.00 0.00 0.00 1.82
187 188 1.704628 TGAGGCTGGATGTGGAGAAAA 59.295 47.619 0.00 0.00 0.00 2.29
188 189 1.361204 TGAGGCTGGATGTGGAGAAA 58.639 50.000 0.00 0.00 0.00 2.52
189 190 1.487976 GATGAGGCTGGATGTGGAGAA 59.512 52.381 0.00 0.00 0.00 2.87
190 191 1.126488 GATGAGGCTGGATGTGGAGA 58.874 55.000 0.00 0.00 0.00 3.71
191 192 0.108207 GGATGAGGCTGGATGTGGAG 59.892 60.000 0.00 0.00 0.00 3.86
192 193 1.689243 CGGATGAGGCTGGATGTGGA 61.689 60.000 0.00 0.00 0.00 4.02
195 196 2.507944 GCGGATGAGGCTGGATGT 59.492 61.111 0.00 0.00 0.00 3.06
241 242 1.416401 AGGTGAACTCAACGGTGTCAT 59.584 47.619 0.00 0.00 38.92 3.06
288 296 4.299547 ACCTTGAGCGCTCGCACA 62.300 61.111 30.75 12.82 44.88 4.57
326 334 0.673985 CTCGCACGGAATGGATCCTA 59.326 55.000 14.23 0.00 46.98 2.94
390 400 1.685224 CACAAGGGGCTTGGCTCTA 59.315 57.895 0.00 0.00 44.81 2.43
414 424 2.437897 CTGAAGGGGCTGGCAAGT 59.562 61.111 2.88 0.00 0.00 3.16
488 504 1.067495 GTGTGAGAGGACAGTGTAGCC 60.067 57.143 0.00 0.00 0.00 3.93
495 511 1.214062 GCGGAGTGTGAGAGGACAG 59.786 63.158 0.00 0.00 0.00 3.51
589 612 9.521503 TGTCGACACAAATTTCAAATTTTATGA 57.478 25.926 15.76 6.29 0.00 2.15
712 737 4.219115 TCAAATACAACCCTTTGGCTTGA 58.781 39.130 0.00 0.00 37.00 3.02
834 996 8.082013 CGATGTGAAGAAATCGAAATGTTTAC 57.918 34.615 0.00 0.00 46.70 2.01
857 1019 2.307309 CGAAGCCGTGTTTGCTCGA 61.307 57.895 0.00 0.00 38.34 4.04
929 1102 1.136147 CAGATTGGAAGTGCGCTGC 59.864 57.895 9.73 0.00 0.00 5.25
947 1124 2.247358 GAGGAGAGGAGATGATGGGAC 58.753 57.143 0.00 0.00 0.00 4.46
969 1151 1.395045 AAGATGCGAGAGGATGCGGA 61.395 55.000 0.00 0.00 44.47 5.54
1060 1294 4.394712 AAGGTTCTCCAGCGGGCG 62.395 66.667 0.00 0.00 35.89 6.13
1061 1295 2.436824 GAAGGTTCTCCAGCGGGC 60.437 66.667 0.00 0.00 35.89 6.13
1062 1296 2.125512 CGAAGGTTCTCCAGCGGG 60.126 66.667 0.00 0.00 35.89 6.13
1063 1297 2.815647 GCGAAGGTTCTCCAGCGG 60.816 66.667 0.00 0.00 34.66 5.52
1064 1298 2.815647 GGCGAAGGTTCTCCAGCG 60.816 66.667 0.00 0.00 32.39 5.18
1065 1299 2.347490 TGGCGAAGGTTCTCCAGC 59.653 61.111 0.00 0.00 37.16 4.85
1073 1307 4.699522 GGAACCGCTGGCGAAGGT 62.700 66.667 16.79 3.11 42.83 3.50
1250 1526 2.977808 AGAGTTGGTTCCTCTCCTTGA 58.022 47.619 9.48 0.00 34.14 3.02
1452 1728 1.059264 GTCGACGGATTCTTGCTTTCG 59.941 52.381 0.00 0.00 0.00 3.46
1455 1731 1.352156 GCGTCGACGGATTCTTGCTT 61.352 55.000 36.13 0.00 40.23 3.91
1575 1893 2.172534 GTCCTCTTCGACGAGCTGA 58.827 57.895 13.21 3.83 0.00 4.26
1918 2290 2.637025 CAACAAGTTGTCCGGCCG 59.363 61.111 21.04 21.04 35.92 6.13
2086 2523 2.366916 AGCAGCACAAGAGAACTACAGT 59.633 45.455 0.00 0.00 0.00 3.55
2088 2525 2.365293 TCAGCAGCACAAGAGAACTACA 59.635 45.455 0.00 0.00 0.00 2.74
2089 2526 3.032017 TCAGCAGCACAAGAGAACTAC 57.968 47.619 0.00 0.00 0.00 2.73
2244 2703 5.043835 ACATCAAGTGTCAGCATGTTGCTA 61.044 41.667 4.41 0.00 45.19 3.49
2286 2745 2.548057 TCTTTTTCTGCTACACGCCTTG 59.452 45.455 0.00 0.00 38.05 3.61
2321 2780 2.613595 ACGATAATACTACACGCACGGA 59.386 45.455 0.00 0.00 0.00 4.69
2323 2782 5.365766 AAAACGATAATACTACACGCACG 57.634 39.130 0.00 0.00 0.00 5.34
2325 2784 8.631676 TTGATAAAACGATAATACTACACGCA 57.368 30.769 0.00 0.00 0.00 5.24
2338 2797 8.739972 ACTTTCAAGGCTAATTGATAAAACGAT 58.260 29.630 0.00 0.00 38.90 3.73
2339 2798 8.106247 ACTTTCAAGGCTAATTGATAAAACGA 57.894 30.769 0.00 0.00 38.90 3.85
2340 2799 8.742554 AACTTTCAAGGCTAATTGATAAAACG 57.257 30.769 0.00 0.00 38.90 3.60
2349 2811 4.306600 CGCCAAAACTTTCAAGGCTAATT 58.693 39.130 0.00 0.00 43.07 1.40
2424 2886 3.450115 AGCTACGCCGGTGGTCTC 61.450 66.667 21.14 5.35 0.00 3.36
2425 2887 3.760035 CAGCTACGCCGGTGGTCT 61.760 66.667 21.14 9.94 0.00 3.85
2474 3170 1.878102 GCAGTTCATCGAACAGGTGGT 60.878 52.381 9.36 0.00 44.11 4.16
2486 3182 1.599071 CGCATCATTACGGCAGTTCAT 59.401 47.619 0.00 0.00 0.00 2.57
2500 3196 3.016031 AGCAAATAATCACACCGCATCA 58.984 40.909 0.00 0.00 0.00 3.07
2512 3208 7.772292 ACGATAGCATATGATGGAGCAAATAAT 59.228 33.333 6.97 0.00 42.67 1.28
2523 3219 4.142752 CCAAAGCCACGATAGCATATGATG 60.143 45.833 6.97 0.00 42.67 3.07
2573 3269 8.016801 GTCATACTATACTTCTAGACGAAAGGC 58.983 40.741 2.78 0.00 42.06 4.35
2617 3329 0.031857 CTGCGCCAAATCCAACAACA 59.968 50.000 4.18 0.00 0.00 3.33
2637 3349 0.895559 CCCTTGAAGGTGGCTTGTCC 60.896 60.000 10.82 0.00 31.93 4.02
2725 3437 5.287674 TCAAAGGAGAGGAAGCTGATATG 57.712 43.478 0.00 0.00 0.00 1.78
2769 3481 0.969149 CTGCGGCTATGTATCAGGGA 59.031 55.000 0.00 0.00 0.00 4.20
2778 3490 1.392589 AAACCATTCCTGCGGCTATG 58.607 50.000 0.00 0.18 0.00 2.23
2885 3597 2.403252 ACCTAAAGATCAACCTGGCG 57.597 50.000 0.00 0.00 0.00 5.69
2919 3631 2.766313 CAAAGAGTGGACACGATTCCA 58.234 47.619 5.76 5.76 43.83 3.53
2957 3669 4.141779 ACAGCATCATCAGTATTCAGCAGA 60.142 41.667 0.00 0.00 0.00 4.26
2958 3670 4.127907 ACAGCATCATCAGTATTCAGCAG 58.872 43.478 0.00 0.00 0.00 4.24
2959 3671 4.146745 ACAGCATCATCAGTATTCAGCA 57.853 40.909 0.00 0.00 0.00 4.41
2960 3672 5.496133 AAACAGCATCATCAGTATTCAGC 57.504 39.130 0.00 0.00 0.00 4.26
2961 3673 5.277202 CCGAAACAGCATCATCAGTATTCAG 60.277 44.000 0.00 0.00 0.00 3.02
2962 3674 4.571984 CCGAAACAGCATCATCAGTATTCA 59.428 41.667 0.00 0.00 0.00 2.57
2963 3675 4.024556 CCCGAAACAGCATCATCAGTATTC 60.025 45.833 0.00 0.00 0.00 1.75
2964 3676 3.879295 CCCGAAACAGCATCATCAGTATT 59.121 43.478 0.00 0.00 0.00 1.89
2977 3689 1.358759 GTTGCACCACCCGAAACAG 59.641 57.895 0.00 0.00 0.00 3.16
3019 3731 2.095768 CGAAAAGTGTGGCATTCATCGT 60.096 45.455 0.00 0.00 0.00 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.