Multiple sequence alignment - TraesCS6A01G146600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G146600 chr6A 100.000 2798 0 0 1 2798 125540462 125543259 0.000000e+00 5168.0
1 TraesCS6A01G146600 chr6A 85.106 94 14 0 6 99 55266314 55266407 2.290000e-16 97.1
2 TraesCS6A01G146600 chr6B 92.227 1621 77 15 319 1912 189276326 189277924 0.000000e+00 2250.0
3 TraesCS6A01G146600 chr6B 85.377 212 22 3 5 208 189276129 189276339 7.850000e-51 211.0
4 TraesCS6A01G146600 chr6B 97.619 42 1 0 5 46 714087401 714087360 3.870000e-09 73.1
5 TraesCS6A01G146600 chr6D 90.374 1631 85 24 320 1912 104145616 104147212 0.000000e+00 2076.0
6 TraesCS6A01G146600 chr6D 85.211 284 32 7 2521 2798 104147693 104147972 1.640000e-72 283.0
7 TraesCS6A01G146600 chr6D 86.239 218 20 7 1 208 104145411 104145628 7.800000e-56 228.0
8 TraesCS6A01G146600 chr2D 76.528 818 159 21 1001 1794 610297832 610297024 1.550000e-112 416.0
9 TraesCS6A01G146600 chr2D 91.753 97 8 0 5 101 330209217 330209121 4.860000e-28 135.0
10 TraesCS6A01G146600 chr2B 76.294 831 162 20 992 1798 745724457 745723638 7.210000e-111 411.0
11 TraesCS6A01G146600 chr2A 75.912 822 165 17 1001 1798 743114562 743113750 9.400000e-105 390.0
12 TraesCS6A01G146600 chr5A 88.542 96 11 0 6 101 692913564 692913469 1.760000e-22 117.0
13 TraesCS6A01G146600 chr3D 85.000 100 14 1 3 101 615399394 615399493 1.770000e-17 100.0
14 TraesCS6A01G146600 chr7D 93.023 43 2 1 360 402 55780001 55780042 8.370000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G146600 chr6A 125540462 125543259 2797 False 5168.000000 5168 100.000000 1 2798 1 chr6A.!!$F2 2797
1 TraesCS6A01G146600 chr6B 189276129 189277924 1795 False 1230.500000 2250 88.802000 5 1912 2 chr6B.!!$F1 1907
2 TraesCS6A01G146600 chr6D 104145411 104147972 2561 False 862.333333 2076 87.274667 1 2798 3 chr6D.!!$F1 2797
3 TraesCS6A01G146600 chr2D 610297024 610297832 808 True 416.000000 416 76.528000 1001 1794 1 chr2D.!!$R2 793
4 TraesCS6A01G146600 chr2B 745723638 745724457 819 True 411.000000 411 76.294000 992 1798 1 chr2B.!!$R1 806
5 TraesCS6A01G146600 chr2A 743113750 743114562 812 True 390.000000 390 75.912000 1001 1798 1 chr2A.!!$R1 797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
587 630 0.24746 TCAGATGGACTTGCGACCAG 59.753 55.0 0.0 0.0 38.33 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2209 2316 0.108898 GCACACACACAAAACTGCCA 60.109 50.0 0.0 0.0 0.0 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 9.472361 CAGCTTTGGATCTTTGATAATATTTGG 57.528 33.333 0.00 0.00 0.00 3.28
130 131 7.572759 AGAGTTAAACAACATAACACATGTCG 58.427 34.615 0.00 0.00 36.04 4.35
166 177 3.107642 ACAACACGGAACAGAAGTAGG 57.892 47.619 0.00 0.00 0.00 3.18
168 179 3.243771 ACAACACGGAACAGAAGTAGGAG 60.244 47.826 0.00 0.00 0.00 3.69
185 196 4.910458 AGGAGTTAACACATTACAGGCT 57.090 40.909 8.61 0.00 0.00 4.58
187 198 5.731591 AGGAGTTAACACATTACAGGCTAC 58.268 41.667 8.61 0.00 0.00 3.58
188 199 5.247564 AGGAGTTAACACATTACAGGCTACA 59.752 40.000 8.61 0.00 0.00 2.74
194 205 3.007940 ACACATTACAGGCTACAGCTCAA 59.992 43.478 0.54 0.00 41.70 3.02
195 206 4.002982 CACATTACAGGCTACAGCTCAAA 58.997 43.478 0.54 0.00 41.70 2.69
196 207 4.455533 CACATTACAGGCTACAGCTCAAAA 59.544 41.667 0.54 0.00 41.70 2.44
197 208 5.048782 CACATTACAGGCTACAGCTCAAAAA 60.049 40.000 0.54 0.00 41.70 1.94
198 209 5.182001 ACATTACAGGCTACAGCTCAAAAAG 59.818 40.000 0.54 0.00 41.70 2.27
231 242 1.777941 TTTTTGGGTACGCCAAAGGT 58.222 45.000 20.68 0.00 38.21 3.50
232 243 1.777941 TTTTGGGTACGCCAAAGGTT 58.222 45.000 20.68 0.00 38.21 3.50
233 244 1.777941 TTTGGGTACGCCAAAGGTTT 58.222 45.000 18.91 0.00 36.17 3.27
234 245 2.653234 TTGGGTACGCCAAAGGTTTA 57.347 45.000 11.93 0.00 36.17 2.01
235 246 1.894881 TGGGTACGCCAAAGGTTTAC 58.105 50.000 7.55 0.00 36.17 2.01
236 247 1.167851 GGGTACGCCAAAGGTTTACC 58.832 55.000 0.00 6.66 33.94 2.85
237 248 1.545204 GGGTACGCCAAAGGTTTACCA 60.545 52.381 13.69 0.00 35.37 3.25
238 249 2.439409 GGTACGCCAAAGGTTTACCAT 58.561 47.619 1.13 0.00 34.47 3.55
239 250 3.608796 GGTACGCCAAAGGTTTACCATA 58.391 45.455 1.13 0.00 34.47 2.74
240 251 3.624410 GGTACGCCAAAGGTTTACCATAG 59.376 47.826 1.13 0.00 34.47 2.23
241 252 2.089201 ACGCCAAAGGTTTACCATAGC 58.911 47.619 1.13 0.00 38.89 2.97
242 253 1.404035 CGCCAAAGGTTTACCATAGCC 59.596 52.381 1.13 0.00 38.89 3.93
243 254 2.735151 GCCAAAGGTTTACCATAGCCT 58.265 47.619 1.13 0.00 38.89 4.58
244 255 3.096852 GCCAAAGGTTTACCATAGCCTT 58.903 45.455 1.13 0.00 42.54 4.35
245 256 4.274978 GCCAAAGGTTTACCATAGCCTTA 58.725 43.478 1.13 0.00 40.12 2.69
246 257 4.893524 GCCAAAGGTTTACCATAGCCTTAT 59.106 41.667 1.13 0.00 40.12 1.73
247 258 6.066032 GCCAAAGGTTTACCATAGCCTTATA 58.934 40.000 1.13 0.00 40.12 0.98
248 259 6.206829 GCCAAAGGTTTACCATAGCCTTATAG 59.793 42.308 1.13 0.00 40.12 1.31
249 260 7.514721 CCAAAGGTTTACCATAGCCTTATAGA 58.485 38.462 1.13 0.00 40.12 1.98
250 261 7.996644 CCAAAGGTTTACCATAGCCTTATAGAA 59.003 37.037 1.13 0.00 40.12 2.10
251 262 9.057089 CAAAGGTTTACCATAGCCTTATAGAAG 57.943 37.037 1.13 0.00 40.12 2.85
252 263 8.562949 AAGGTTTACCATAGCCTTATAGAAGA 57.437 34.615 0.00 0.00 39.33 2.87
253 264 8.743636 AGGTTTACCATAGCCTTATAGAAGAT 57.256 34.615 0.00 0.00 38.89 2.40
254 265 9.839185 AGGTTTACCATAGCCTTATAGAAGATA 57.161 33.333 0.00 0.00 38.89 1.98
279 290 8.530804 AAACTATAAGAGATTACACGGTAGGT 57.469 34.615 0.00 0.00 0.00 3.08
280 291 9.632638 AAACTATAAGAGATTACACGGTAGGTA 57.367 33.333 0.00 0.00 0.00 3.08
281 292 8.845413 ACTATAAGAGATTACACGGTAGGTAG 57.155 38.462 0.00 0.00 0.00 3.18
282 293 8.654997 ACTATAAGAGATTACACGGTAGGTAGA 58.345 37.037 0.00 0.00 0.00 2.59
283 294 9.669887 CTATAAGAGATTACACGGTAGGTAGAT 57.330 37.037 0.00 0.00 0.00 1.98
285 296 7.982761 AAGAGATTACACGGTAGGTAGATAG 57.017 40.000 0.00 0.00 0.00 2.08
286 297 7.313740 AGAGATTACACGGTAGGTAGATAGA 57.686 40.000 0.00 0.00 0.00 1.98
287 298 7.160726 AGAGATTACACGGTAGGTAGATAGAC 58.839 42.308 0.00 0.00 0.00 2.59
288 299 6.237154 AGATTACACGGTAGGTAGATAGACC 58.763 44.000 0.00 0.00 40.08 3.85
297 308 1.337387 GGTAGATAGACCTCACACGGC 59.663 57.143 0.00 0.00 36.47 5.68
298 309 1.002684 GTAGATAGACCTCACACGGCG 60.003 57.143 4.80 4.80 0.00 6.46
299 310 1.589196 GATAGACCTCACACGGCGC 60.589 63.158 6.90 0.00 0.00 6.53
300 311 2.279502 GATAGACCTCACACGGCGCA 62.280 60.000 10.83 0.00 0.00 6.09
301 312 1.676678 ATAGACCTCACACGGCGCAT 61.677 55.000 10.83 0.00 0.00 4.73
302 313 2.279502 TAGACCTCACACGGCGCATC 62.280 60.000 10.83 0.00 0.00 3.91
303 314 4.760047 ACCTCACACGGCGCATCC 62.760 66.667 10.83 0.00 0.00 3.51
304 315 4.758251 CCTCACACGGCGCATCCA 62.758 66.667 10.83 0.00 34.01 3.41
305 316 3.490759 CTCACACGGCGCATCCAC 61.491 66.667 10.83 0.00 34.01 4.02
309 320 4.155733 CACGGCGCATCCACCCTA 62.156 66.667 10.83 0.00 34.01 3.53
310 321 4.157120 ACGGCGCATCCACCCTAC 62.157 66.667 10.83 0.00 34.01 3.18
311 322 4.910585 CGGCGCATCCACCCTACC 62.911 72.222 10.83 0.00 34.01 3.18
312 323 4.564110 GGCGCATCCACCCTACCC 62.564 72.222 10.83 0.00 34.01 3.69
313 324 3.480133 GCGCATCCACCCTACCCT 61.480 66.667 0.30 0.00 0.00 4.34
314 325 2.822399 CGCATCCACCCTACCCTC 59.178 66.667 0.00 0.00 0.00 4.30
315 326 2.808206 CGCATCCACCCTACCCTCC 61.808 68.421 0.00 0.00 0.00 4.30
316 327 1.692749 GCATCCACCCTACCCTCCA 60.693 63.158 0.00 0.00 0.00 3.86
317 328 1.984288 GCATCCACCCTACCCTCCAC 61.984 65.000 0.00 0.00 0.00 4.02
345 356 9.672673 AGAGCAAATAGTTCAAAAGCTAGATAA 57.327 29.630 0.00 0.00 0.00 1.75
353 364 7.278875 AGTTCAAAAGCTAGATAAGGATCAGG 58.721 38.462 0.00 0.00 34.17 3.86
359 370 4.140805 AGCTAGATAAGGATCAGGTGGACT 60.141 45.833 0.00 0.00 34.17 3.85
389 400 8.704849 TCCCGACAAATGATGGATTTTATTAT 57.295 30.769 0.00 0.00 31.41 1.28
392 403 9.831737 CCGACAAATGATGGATTTTATTATCTC 57.168 33.333 0.00 0.00 31.41 2.75
432 443 4.202233 TGGATGCAAACACAATGAACACAT 60.202 37.500 0.00 0.00 0.00 3.21
434 445 6.101332 GGATGCAAACACAATGAACACATAT 58.899 36.000 0.00 0.00 0.00 1.78
435 446 6.035220 GGATGCAAACACAATGAACACATATG 59.965 38.462 0.00 0.00 0.00 1.78
439 450 5.565592 AACACAATGAACACATATGCGAT 57.434 34.783 1.58 0.00 0.00 4.58
440 451 4.912214 ACACAATGAACACATATGCGATG 58.088 39.130 1.58 0.00 0.00 3.84
469 480 5.551305 TGCATAGCTAGGATACACACAAT 57.449 39.130 10.11 0.00 41.41 2.71
472 483 5.406780 GCATAGCTAGGATACACACAATCAC 59.593 44.000 10.11 0.00 41.41 3.06
499 514 3.690422 ACACACGCACAAATAAACACAG 58.310 40.909 0.00 0.00 0.00 3.66
500 515 3.375610 ACACACGCACAAATAAACACAGA 59.624 39.130 0.00 0.00 0.00 3.41
501 516 3.723764 CACACGCACAAATAAACACAGAC 59.276 43.478 0.00 0.00 0.00 3.51
502 517 3.242936 ACACGCACAAATAAACACAGACC 60.243 43.478 0.00 0.00 0.00 3.85
503 518 2.946329 ACGCACAAATAAACACAGACCA 59.054 40.909 0.00 0.00 0.00 4.02
506 521 4.440758 CGCACAAATAAACACAGACCAAAG 59.559 41.667 0.00 0.00 0.00 2.77
507 522 4.744631 GCACAAATAAACACAGACCAAAGG 59.255 41.667 0.00 0.00 0.00 3.11
560 603 7.649306 AGTGATCAACAAGCAATAGTTTGAAAC 59.351 33.333 0.00 0.00 38.10 2.78
562 605 5.596845 TCAACAAGCAATAGTTTGAAACCC 58.403 37.500 4.14 0.00 38.10 4.11
564 607 5.806654 ACAAGCAATAGTTTGAAACCCAT 57.193 34.783 4.14 0.00 38.10 4.00
585 628 1.576356 GATCAGATGGACTTGCGACC 58.424 55.000 0.00 0.00 0.00 4.79
586 629 0.904649 ATCAGATGGACTTGCGACCA 59.095 50.000 0.00 0.00 39.24 4.02
587 630 0.247460 TCAGATGGACTTGCGACCAG 59.753 55.000 0.00 0.00 38.33 4.00
588 631 0.247460 CAGATGGACTTGCGACCAGA 59.753 55.000 0.00 0.00 38.33 3.86
589 632 1.134580 CAGATGGACTTGCGACCAGAT 60.135 52.381 0.00 0.00 38.33 2.90
590 633 2.101415 CAGATGGACTTGCGACCAGATA 59.899 50.000 0.00 0.00 38.33 1.98
591 634 2.968574 AGATGGACTTGCGACCAGATAT 59.031 45.455 0.00 0.00 38.33 1.63
592 635 3.389329 AGATGGACTTGCGACCAGATATT 59.611 43.478 0.00 0.00 38.33 1.28
593 636 3.627395 TGGACTTGCGACCAGATATTT 57.373 42.857 0.00 0.00 31.37 1.40
594 637 3.531538 TGGACTTGCGACCAGATATTTC 58.468 45.455 0.00 0.00 31.37 2.17
595 638 3.055458 TGGACTTGCGACCAGATATTTCA 60.055 43.478 0.00 0.00 31.37 2.69
596 639 4.130118 GGACTTGCGACCAGATATTTCAT 58.870 43.478 0.00 0.00 0.00 2.57
597 640 5.163353 TGGACTTGCGACCAGATATTTCATA 60.163 40.000 0.00 0.00 31.37 2.15
598 641 5.934625 GGACTTGCGACCAGATATTTCATAT 59.065 40.000 0.00 0.00 0.00 1.78
599 642 6.428159 GGACTTGCGACCAGATATTTCATATT 59.572 38.462 0.00 0.00 0.00 1.28
600 643 7.360438 GGACTTGCGACCAGATATTTCATATTC 60.360 40.741 0.00 0.00 0.00 1.75
601 644 6.428159 ACTTGCGACCAGATATTTCATATTCC 59.572 38.462 0.00 0.00 0.00 3.01
602 645 5.245531 TGCGACCAGATATTTCATATTCCC 58.754 41.667 0.00 0.00 0.00 3.97
603 646 5.013079 TGCGACCAGATATTTCATATTCCCT 59.987 40.000 0.00 0.00 0.00 4.20
604 647 5.352569 GCGACCAGATATTTCATATTCCCTG 59.647 44.000 0.00 0.00 0.00 4.45
643 706 2.872858 GACATAGGCTCAATTCGGGTTC 59.127 50.000 0.00 0.00 0.00 3.62
644 707 1.867233 CATAGGCTCAATTCGGGTTCG 59.133 52.381 0.00 0.00 37.82 3.95
645 708 0.899720 TAGGCTCAATTCGGGTTCGT 59.100 50.000 0.00 0.00 37.69 3.85
646 709 0.391263 AGGCTCAATTCGGGTTCGTC 60.391 55.000 0.00 0.00 37.69 4.20
688 752 0.801836 GAAAATGCATGGCCGAACGG 60.802 55.000 0.00 9.00 38.57 4.44
689 753 1.247419 AAAATGCATGGCCGAACGGA 61.247 50.000 17.63 0.00 37.50 4.69
690 754 1.037030 AAATGCATGGCCGAACGGAT 61.037 50.000 17.63 0.00 37.50 4.18
691 755 1.447317 AATGCATGGCCGAACGGATC 61.447 55.000 17.63 8.51 37.50 3.36
729 793 2.638744 AGCTCAGCTGTTTTCTGGC 58.361 52.632 14.67 7.89 37.57 4.85
739 803 3.300009 CTGTTTTCTGGCGATGAACAAC 58.700 45.455 0.00 0.00 30.32 3.32
910 974 3.124297 GCATCTATAATTGGTGCGAGCTC 59.876 47.826 2.73 2.73 0.00 4.09
936 1000 6.040391 GCCAGATCAAGAAGTATACAGAGTCT 59.960 42.308 5.50 0.00 0.00 3.24
937 1001 7.648142 CCAGATCAAGAAGTATACAGAGTCTC 58.352 42.308 5.50 0.00 0.00 3.36
938 1002 7.502226 CCAGATCAAGAAGTATACAGAGTCTCT 59.498 40.741 5.50 0.00 0.00 3.10
939 1003 8.559536 CAGATCAAGAAGTATACAGAGTCTCTC 58.440 40.741 5.50 0.00 0.00 3.20
957 1021 5.639931 GTCTCTCCGCAGAAAGAAAAAGTAT 59.360 40.000 0.00 0.00 0.00 2.12
1267 1339 1.517257 GTCATCCAGCAGTCCGTCG 60.517 63.158 0.00 0.00 0.00 5.12
1346 1418 1.576421 CCCGCTTTGAGCACTTCAC 59.424 57.895 0.50 0.00 42.58 3.18
1569 1662 0.038526 AGCTGGAGAACACCGTTACG 60.039 55.000 0.00 0.00 0.00 3.18
1760 1853 3.129502 CGCCACCATGCTGGACAG 61.130 66.667 11.45 0.00 40.96 3.51
1898 1993 9.901172 AAGTCCGGTAAAAATATATTGAGTTCT 57.099 29.630 0.00 0.00 0.00 3.01
1934 2041 9.851686 AATTTGCATAATATACTCCTTGTCTCA 57.148 29.630 0.00 0.00 0.00 3.27
1948 2055 9.427821 ACTCCTTGTCTCATAATATAAGACTGT 57.572 33.333 5.27 0.00 40.07 3.55
1954 2061 9.665719 TGTCTCATAATATAAGACTGTTTTGCA 57.334 29.630 5.27 0.00 40.07 4.08
1957 2064 9.443283 CTCATAATATAAGACTGTTTTGCAAGC 57.557 33.333 0.00 0.00 0.00 4.01
1958 2065 9.177608 TCATAATATAAGACTGTTTTGCAAGCT 57.822 29.630 0.00 0.00 0.00 3.74
1959 2066 9.229784 CATAATATAAGACTGTTTTGCAAGCTG 57.770 33.333 0.00 4.01 0.00 4.24
1960 2067 7.452880 AATATAAGACTGTTTTGCAAGCTGA 57.547 32.000 0.00 0.00 0.00 4.26
1961 2068 5.972107 ATAAGACTGTTTTGCAAGCTGAT 57.028 34.783 0.00 0.00 0.00 2.90
1962 2069 4.660789 AAGACTGTTTTGCAAGCTGATT 57.339 36.364 0.00 0.69 0.00 2.57
1963 2070 5.772825 AAGACTGTTTTGCAAGCTGATTA 57.227 34.783 0.00 0.00 0.00 1.75
1964 2071 5.368256 AGACTGTTTTGCAAGCTGATTAG 57.632 39.130 0.00 0.00 0.00 1.73
1965 2072 4.217118 AGACTGTTTTGCAAGCTGATTAGG 59.783 41.667 0.00 0.00 0.00 2.69
1966 2073 3.256631 ACTGTTTTGCAAGCTGATTAGGG 59.743 43.478 0.00 0.00 0.00 3.53
1967 2074 3.495331 TGTTTTGCAAGCTGATTAGGGA 58.505 40.909 0.00 0.00 0.00 4.20
1968 2075 3.507233 TGTTTTGCAAGCTGATTAGGGAG 59.493 43.478 0.00 0.00 0.00 4.30
1977 2084 5.862678 AGCTGATTAGGGAGTAGAAGTTC 57.137 43.478 0.00 0.00 0.00 3.01
1996 2103 1.295357 CCGCGGTTCATGTAGCAACA 61.295 55.000 19.50 0.00 40.69 3.33
2000 2107 3.181515 CGCGGTTCATGTAGCAACATTTA 60.182 43.478 0.00 0.00 44.07 1.40
2003 2110 5.676079 GCGGTTCATGTAGCAACATTTATGT 60.676 40.000 2.40 0.00 44.07 2.29
2010 2117 7.495606 TCATGTAGCAACATTTATGTAGTCCTG 59.504 37.037 0.00 0.00 44.07 3.86
2014 2121 6.356556 AGCAACATTTATGTAGTCCTGCATA 58.643 36.000 15.09 1.54 40.26 3.14
2057 2164 1.153188 CACCCAGACACACTGCACA 60.153 57.895 0.00 0.00 44.52 4.57
2072 2179 2.877786 CTGCACACAATCACCTACAACA 59.122 45.455 0.00 0.00 0.00 3.33
2075 2182 4.340666 TGCACACAATCACCTACAACATTT 59.659 37.500 0.00 0.00 0.00 2.32
2089 2196 9.077885 ACCTACAACATTTGTCATAATCAAAGT 57.922 29.630 0.00 0.00 44.12 2.66
2107 2214 9.657419 AATCAAAGTCACAAAGTTTCAGAAATT 57.343 25.926 0.00 0.00 0.00 1.82
2121 2228 8.041323 AGTTTCAGAAATTATGACTCGGTGTAT 58.959 33.333 0.00 0.00 0.00 2.29
2128 2235 9.095065 GAAATTATGACTCGGTGTATAACAACT 57.905 33.333 0.00 0.00 32.52 3.16
2131 2238 5.963176 TGACTCGGTGTATAACAACTACA 57.037 39.130 0.00 0.00 32.52 2.74
2152 2259 6.985188 ACACTGATATTGCGTGACTAAAAT 57.015 33.333 6.89 0.00 33.13 1.82
2156 2263 7.962373 CACTGATATTGCGTGACTAAAATGAAA 59.038 33.333 0.00 0.00 0.00 2.69
2158 2265 7.471721 TGATATTGCGTGACTAAAATGAAAGG 58.528 34.615 0.00 0.00 0.00 3.11
2159 2266 5.957842 ATTGCGTGACTAAAATGAAAGGA 57.042 34.783 0.00 0.00 0.00 3.36
2160 2267 4.742438 TGCGTGACTAAAATGAAAGGAC 57.258 40.909 0.00 0.00 0.00 3.85
2161 2268 4.130857 TGCGTGACTAAAATGAAAGGACA 58.869 39.130 0.00 0.00 0.00 4.02
2163 2270 4.612939 GCGTGACTAAAATGAAAGGACACC 60.613 45.833 0.00 0.00 0.00 4.16
2165 2272 5.008217 CGTGACTAAAATGAAAGGACACCAA 59.992 40.000 0.00 0.00 0.00 3.67
2166 2273 6.293955 CGTGACTAAAATGAAAGGACACCAAT 60.294 38.462 0.00 0.00 0.00 3.16
2167 2274 7.084486 GTGACTAAAATGAAAGGACACCAATC 58.916 38.462 0.00 0.00 0.00 2.67
2168 2275 6.208599 TGACTAAAATGAAAGGACACCAATCC 59.791 38.462 0.00 0.00 39.28 3.01
2169 2276 4.519540 AAAATGAAAGGACACCAATCCG 57.480 40.909 0.00 0.00 44.22 4.18
2170 2277 3.433306 AATGAAAGGACACCAATCCGA 57.567 42.857 0.00 0.00 44.22 4.55
2171 2278 2.940994 TGAAAGGACACCAATCCGAA 57.059 45.000 0.00 0.00 44.22 4.30
2172 2279 2.500229 TGAAAGGACACCAATCCGAAC 58.500 47.619 0.00 0.00 44.22 3.95
2173 2280 1.463444 GAAAGGACACCAATCCGAACG 59.537 52.381 0.00 0.00 44.22 3.95
2174 2281 0.395312 AAGGACACCAATCCGAACGT 59.605 50.000 0.00 0.00 44.22 3.99
2175 2282 0.395312 AGGACACCAATCCGAACGTT 59.605 50.000 0.00 0.00 44.22 3.99
2176 2283 0.794473 GGACACCAATCCGAACGTTC 59.206 55.000 18.47 18.47 0.00 3.95
2177 2284 1.504359 GACACCAATCCGAACGTTCA 58.496 50.000 26.71 9.90 0.00 3.18
2178 2285 1.193874 GACACCAATCCGAACGTTCAC 59.806 52.381 26.71 2.88 0.00 3.18
2179 2286 1.202604 ACACCAATCCGAACGTTCACT 60.203 47.619 26.71 8.60 0.00 3.41
2180 2287 1.194547 CACCAATCCGAACGTTCACTG 59.805 52.381 26.71 16.43 0.00 3.66
2181 2288 0.796312 CCAATCCGAACGTTCACTGG 59.204 55.000 26.71 20.65 0.00 4.00
2182 2289 1.606994 CCAATCCGAACGTTCACTGGA 60.607 52.381 26.71 23.57 0.00 3.86
2183 2290 2.139917 CAATCCGAACGTTCACTGGAA 58.860 47.619 26.71 10.96 31.42 3.53
2184 2291 2.536761 ATCCGAACGTTCACTGGAAA 57.463 45.000 26.71 6.80 34.13 3.13
2185 2292 1.860676 TCCGAACGTTCACTGGAAAG 58.139 50.000 26.71 8.62 38.31 2.62
2186 2293 0.234884 CCGAACGTTCACTGGAAAGC 59.765 55.000 26.71 0.00 36.16 3.51
2187 2294 0.934496 CGAACGTTCACTGGAAAGCA 59.066 50.000 26.71 0.00 36.16 3.91
2188 2295 1.531149 CGAACGTTCACTGGAAAGCAT 59.469 47.619 26.71 0.00 36.16 3.79
2189 2296 2.662791 CGAACGTTCACTGGAAAGCATG 60.663 50.000 26.71 3.07 36.16 4.06
2190 2297 1.238439 ACGTTCACTGGAAAGCATGG 58.762 50.000 0.00 0.00 36.16 3.66
2191 2298 0.109597 CGTTCACTGGAAAGCATGGC 60.110 55.000 0.00 0.00 34.13 4.40
2192 2299 0.961019 GTTCACTGGAAAGCATGGCA 59.039 50.000 0.00 0.00 34.13 4.92
2193 2300 1.547372 GTTCACTGGAAAGCATGGCAT 59.453 47.619 0.00 0.00 34.13 4.40
2194 2301 1.927487 TCACTGGAAAGCATGGCATT 58.073 45.000 0.00 0.00 0.00 3.56
2195 2302 2.250031 TCACTGGAAAGCATGGCATTT 58.750 42.857 0.00 0.00 0.00 2.32
2196 2303 3.429492 TCACTGGAAAGCATGGCATTTA 58.571 40.909 0.00 0.00 0.00 1.40
2197 2304 3.193267 TCACTGGAAAGCATGGCATTTAC 59.807 43.478 0.00 0.00 0.00 2.01
2198 2305 2.164219 ACTGGAAAGCATGGCATTTACG 59.836 45.455 0.00 0.00 0.00 3.18
2199 2306 2.423185 CTGGAAAGCATGGCATTTACGA 59.577 45.455 0.00 0.00 0.00 3.43
2200 2307 2.822561 TGGAAAGCATGGCATTTACGAA 59.177 40.909 0.00 0.00 0.00 3.85
2201 2308 3.256879 TGGAAAGCATGGCATTTACGAAA 59.743 39.130 0.00 0.00 0.00 3.46
2202 2309 3.859386 GGAAAGCATGGCATTTACGAAAG 59.141 43.478 0.00 0.00 0.00 2.62
2203 2310 3.508744 AAGCATGGCATTTACGAAAGG 57.491 42.857 0.00 0.00 0.00 3.11
2204 2311 1.134946 AGCATGGCATTTACGAAAGGC 59.865 47.619 0.00 7.97 46.59 4.35
2210 2317 3.070429 GCATTTACGAAAGGCCTCATG 57.930 47.619 5.23 0.12 41.94 3.07
2211 2318 2.223572 GCATTTACGAAAGGCCTCATGG 60.224 50.000 5.23 1.77 41.94 3.66
2223 2330 2.427232 CCTCATGGCAGTTTTGTGTG 57.573 50.000 0.00 0.00 0.00 3.82
2224 2331 1.682854 CCTCATGGCAGTTTTGTGTGT 59.317 47.619 0.00 0.00 0.00 3.72
2225 2332 2.544277 CCTCATGGCAGTTTTGTGTGTG 60.544 50.000 0.00 0.00 0.00 3.82
2226 2333 2.098614 TCATGGCAGTTTTGTGTGTGT 58.901 42.857 0.00 0.00 0.00 3.72
2227 2334 2.159268 TCATGGCAGTTTTGTGTGTGTG 60.159 45.455 0.00 0.00 0.00 3.82
2228 2335 0.108898 TGGCAGTTTTGTGTGTGTGC 60.109 50.000 0.00 0.00 0.00 4.57
2229 2336 1.139226 GGCAGTTTTGTGTGTGTGCG 61.139 55.000 0.00 0.00 0.00 5.34
2230 2337 1.139226 GCAGTTTTGTGTGTGTGCGG 61.139 55.000 0.00 0.00 0.00 5.69
2231 2338 0.449786 CAGTTTTGTGTGTGTGCGGA 59.550 50.000 0.00 0.00 0.00 5.54
2232 2339 0.732571 AGTTTTGTGTGTGTGCGGAG 59.267 50.000 0.00 0.00 0.00 4.63
2233 2340 0.730265 GTTTTGTGTGTGTGCGGAGA 59.270 50.000 0.00 0.00 0.00 3.71
2234 2341 1.013596 TTTTGTGTGTGTGCGGAGAG 58.986 50.000 0.00 0.00 0.00 3.20
2235 2342 0.813610 TTTGTGTGTGTGCGGAGAGG 60.814 55.000 0.00 0.00 0.00 3.69
2236 2343 1.966901 TTGTGTGTGTGCGGAGAGGT 61.967 55.000 0.00 0.00 0.00 3.85
2237 2344 1.227556 GTGTGTGTGCGGAGAGGTT 60.228 57.895 0.00 0.00 0.00 3.50
2238 2345 1.227527 TGTGTGTGCGGAGAGGTTG 60.228 57.895 0.00 0.00 0.00 3.77
2239 2346 1.961277 GTGTGTGCGGAGAGGTTGG 60.961 63.158 0.00 0.00 0.00 3.77
2240 2347 2.358737 GTGTGCGGAGAGGTTGGG 60.359 66.667 0.00 0.00 0.00 4.12
2241 2348 2.847234 TGTGCGGAGAGGTTGGGT 60.847 61.111 0.00 0.00 0.00 4.51
2242 2349 2.430367 GTGCGGAGAGGTTGGGTT 59.570 61.111 0.00 0.00 0.00 4.11
2243 2350 1.966451 GTGCGGAGAGGTTGGGTTG 60.966 63.158 0.00 0.00 0.00 3.77
2244 2351 2.359975 GCGGAGAGGTTGGGTTGG 60.360 66.667 0.00 0.00 0.00 3.77
2245 2352 2.359975 CGGAGAGGTTGGGTTGGC 60.360 66.667 0.00 0.00 0.00 4.52
2246 2353 2.843545 GGAGAGGTTGGGTTGGCA 59.156 61.111 0.00 0.00 0.00 4.92
2247 2354 1.384191 GGAGAGGTTGGGTTGGCAT 59.616 57.895 0.00 0.00 0.00 4.40
2248 2355 0.251787 GGAGAGGTTGGGTTGGCATT 60.252 55.000 0.00 0.00 0.00 3.56
2249 2356 1.632589 GAGAGGTTGGGTTGGCATTT 58.367 50.000 0.00 0.00 0.00 2.32
2250 2357 1.970640 GAGAGGTTGGGTTGGCATTTT 59.029 47.619 0.00 0.00 0.00 1.82
2251 2358 2.368548 GAGAGGTTGGGTTGGCATTTTT 59.631 45.455 0.00 0.00 0.00 1.94
2321 2428 4.002506 ACGCCACCGTCAGATGCA 62.003 61.111 0.00 0.00 46.39 3.96
2322 2429 3.190849 CGCCACCGTCAGATGCAG 61.191 66.667 0.00 0.00 0.00 4.41
2323 2430 2.265739 GCCACCGTCAGATGCAGA 59.734 61.111 0.00 0.00 0.00 4.26
2324 2431 1.153289 GCCACCGTCAGATGCAGAT 60.153 57.895 0.00 0.00 0.00 2.90
2325 2432 1.156645 GCCACCGTCAGATGCAGATC 61.157 60.000 0.00 0.00 0.00 2.75
2326 2433 0.463204 CCACCGTCAGATGCAGATCT 59.537 55.000 0.00 0.00 39.75 2.75
2327 2434 1.683385 CCACCGTCAGATGCAGATCTA 59.317 52.381 0.00 0.00 36.75 1.98
2328 2435 2.101415 CCACCGTCAGATGCAGATCTAA 59.899 50.000 0.00 0.00 36.75 2.10
2329 2436 3.119291 CACCGTCAGATGCAGATCTAAC 58.881 50.000 0.00 0.00 36.75 2.34
2330 2437 2.223595 ACCGTCAGATGCAGATCTAACG 60.224 50.000 6.10 6.10 46.24 3.18
2331 2438 2.389059 CGTCAGATGCAGATCTAACGG 58.611 52.381 5.27 0.00 43.91 4.44
2332 2439 2.033424 CGTCAGATGCAGATCTAACGGA 59.967 50.000 5.27 0.00 43.91 4.69
2333 2440 3.304996 CGTCAGATGCAGATCTAACGGAT 60.305 47.826 5.27 0.00 43.91 4.18
2334 2441 5.138070 CGTCAGATGCAGATCTAACGGATC 61.138 50.000 5.27 0.00 43.91 3.36
2340 2447 1.972978 GATCTAACGGATCCGGGGG 59.027 63.158 35.87 23.74 43.65 5.40
2341 2448 2.168666 GATCTAACGGATCCGGGGGC 62.169 65.000 35.87 16.97 43.65 5.80
2342 2449 4.295119 CTAACGGATCCGGGGGCG 62.295 72.222 35.87 16.38 44.69 6.13
2348 2455 4.886121 GATCCGGGGGCGTTCGTC 62.886 72.222 0.00 0.00 0.00 4.20
2352 2459 4.444838 CGGGGGCGTTCGTCATGA 62.445 66.667 0.00 0.00 0.00 3.07
2353 2460 2.189521 GGGGGCGTTCGTCATGAT 59.810 61.111 0.00 0.00 0.00 2.45
2354 2461 1.887707 GGGGGCGTTCGTCATGATC 60.888 63.158 0.00 0.00 0.00 2.92
2355 2462 1.144057 GGGGCGTTCGTCATGATCT 59.856 57.895 0.00 0.00 0.00 2.75
2356 2463 1.154205 GGGGCGTTCGTCATGATCTG 61.154 60.000 0.00 0.00 0.00 2.90
2357 2464 1.154205 GGGCGTTCGTCATGATCTGG 61.154 60.000 0.00 0.00 0.00 3.86
2358 2465 0.460284 GGCGTTCGTCATGATCTGGT 60.460 55.000 0.00 0.00 0.00 4.00
2359 2466 1.359848 GCGTTCGTCATGATCTGGTT 58.640 50.000 0.00 0.00 0.00 3.67
2360 2467 1.324736 GCGTTCGTCATGATCTGGTTC 59.675 52.381 0.00 0.00 0.00 3.62
2361 2468 1.927174 CGTTCGTCATGATCTGGTTCC 59.073 52.381 0.00 0.00 0.00 3.62
2362 2469 2.280628 GTTCGTCATGATCTGGTTCCC 58.719 52.381 0.00 0.00 0.00 3.97
2363 2470 0.830648 TCGTCATGATCTGGTTCCCC 59.169 55.000 0.00 0.00 0.00 4.81
2364 2471 0.530650 CGTCATGATCTGGTTCCCCG 60.531 60.000 0.00 0.00 0.00 5.73
2365 2472 0.815615 GTCATGATCTGGTTCCCCGC 60.816 60.000 0.00 0.00 0.00 6.13
2366 2473 1.889105 CATGATCTGGTTCCCCGCG 60.889 63.158 0.00 0.00 0.00 6.46
2367 2474 2.367202 ATGATCTGGTTCCCCGCGT 61.367 57.895 4.92 0.00 0.00 6.01
2368 2475 1.910580 ATGATCTGGTTCCCCGCGTT 61.911 55.000 4.92 0.00 0.00 4.84
2369 2476 1.814169 GATCTGGTTCCCCGCGTTC 60.814 63.158 4.92 0.00 0.00 3.95
2370 2477 3.659089 ATCTGGTTCCCCGCGTTCG 62.659 63.158 4.92 0.00 0.00 3.95
2377 2484 4.215742 CCCCGCGTTCGCCAGATA 62.216 66.667 4.92 0.00 0.00 1.98
2378 2485 2.658593 CCCGCGTTCGCCAGATAG 60.659 66.667 4.92 0.00 0.00 2.08
2379 2486 3.330853 CCGCGTTCGCCAGATAGC 61.331 66.667 4.92 0.00 0.00 2.97
2380 2487 2.582226 CGCGTTCGCCAGATAGCA 60.582 61.111 11.51 0.00 32.09 3.49
2381 2488 1.951130 CGCGTTCGCCAGATAGCAT 60.951 57.895 11.51 0.00 32.09 3.79
2382 2489 1.490693 CGCGTTCGCCAGATAGCATT 61.491 55.000 11.51 0.00 32.09 3.56
2388 2495 1.211703 TCGCCAGATAGCATTTCCCAA 59.788 47.619 0.00 0.00 0.00 4.12
2422 2529 8.665643 AGAGAATCATCAATCTGATCTTTCAC 57.334 34.615 0.00 5.08 34.28 3.18
2423 2530 7.438757 AGAGAATCATCAATCTGATCTTTCACG 59.561 37.037 0.00 0.00 34.28 4.35
2424 2531 5.670149 ATCATCAATCTGATCTTTCACGC 57.330 39.130 0.00 0.00 34.28 5.34
2457 2564 6.724351 TGGATATAACATGGGATCTTCATGG 58.276 40.000 23.34 12.22 44.42 3.66
2465 2572 1.478105 GGGATCTTCATGGCCACAAAC 59.522 52.381 8.16 0.00 0.00 2.93
2466 2573 1.478105 GGATCTTCATGGCCACAAACC 59.522 52.381 8.16 1.60 0.00 3.27
2475 2582 1.310904 GGCCACAAACCGAAACTACA 58.689 50.000 0.00 0.00 0.00 2.74
2480 2587 3.749088 CCACAAACCGAAACTACATGCTA 59.251 43.478 0.00 0.00 0.00 3.49
2499 2606 9.791801 ACATGCTATGGACATATAAATACAACA 57.208 29.630 0.00 0.00 33.60 3.33
2510 2617 9.373603 ACATATAAATACAACACTTTGCGACTA 57.626 29.630 0.00 0.00 36.00 2.59
2514 2621 6.554334 AATACAACACTTTGCGACTACAAT 57.446 33.333 0.00 0.00 36.00 2.71
2516 2623 2.969443 ACACTTTGCGACTACAATGC 57.031 45.000 0.00 0.00 0.00 3.56
2517 2624 2.494059 ACACTTTGCGACTACAATGCT 58.506 42.857 0.00 0.00 0.00 3.79
2529 2767 8.303876 TGCGACTACAATGCTGATATAAGAATA 58.696 33.333 0.00 0.00 0.00 1.75
2540 2778 9.591792 TGCTGATATAAGAATATGATACAGTGC 57.408 33.333 0.00 0.00 0.00 4.40
2546 2784 6.889301 AAGAATATGATACAGTGCCATTGG 57.111 37.500 0.00 0.00 0.00 3.16
2590 2834 5.720261 GTGAGATCCACGAATAACTTTCC 57.280 43.478 0.00 0.00 35.86 3.13
2592 2836 5.642063 GTGAGATCCACGAATAACTTTCCAA 59.358 40.000 0.00 0.00 35.86 3.53
2603 2847 9.016438 ACGAATAACTTTCCAATAGCCTTTTTA 57.984 29.630 0.00 0.00 0.00 1.52
2634 2878 1.065636 TCTCCTGCCAGCAGATGAAAG 60.066 52.381 21.01 9.66 46.30 2.62
2638 2882 0.537828 TGCCAGCAGATGAAAGTGCA 60.538 50.000 0.00 0.00 42.47 4.57
2640 2884 0.809385 CCAGCAGATGAAAGTGCAGG 59.191 55.000 0.00 0.00 42.47 4.85
2643 2887 1.318158 GCAGATGAAAGTGCAGGGGG 61.318 60.000 0.00 0.00 39.62 5.40
2701 2945 9.588096 TTAGAGGAAACTGATATGAGTATAGCA 57.412 33.333 0.00 0.00 44.43 3.49
2721 2965 4.514441 AGCAGAGATTTTGAGACACACTTG 59.486 41.667 0.00 0.00 0.00 3.16
2722 2966 4.274459 GCAGAGATTTTGAGACACACTTGT 59.726 41.667 0.00 0.00 39.32 3.16
2728 2972 6.825721 AGATTTTGAGACACACTTGTTTCTCT 59.174 34.615 20.73 6.08 46.53 3.10
2752 2996 0.032540 GCCAACAAGCAAGGAACTGG 59.967 55.000 0.00 0.00 40.86 4.00
2766 3010 2.544685 GAACTGGTCCATGAGTGATCG 58.455 52.381 0.00 0.00 0.00 3.69
2767 3011 0.176680 ACTGGTCCATGAGTGATCGC 59.823 55.000 0.00 0.00 0.00 4.58
2768 3012 0.873312 CTGGTCCATGAGTGATCGCG 60.873 60.000 0.00 0.00 0.00 5.87
2775 3019 1.935873 CATGAGTGATCGCGGAATGTT 59.064 47.619 6.13 0.00 0.00 2.71
2787 3031 8.085909 TGATCGCGGAATGTTATTATTTCTCTA 58.914 33.333 6.13 0.00 0.00 2.43
2791 3035 7.462856 CGCGGAATGTTATTATTTCTCTATCCG 60.463 40.741 0.00 0.00 45.58 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 6.398935 GCACATCTTTTGCGAGAACAATAAAC 60.399 38.462 0.00 0.00 0.00 2.01
78 79 3.004629 TGCACATCTTTTGCGAGAACAAT 59.995 39.130 0.00 0.00 43.34 2.71
79 80 2.357323 TGCACATCTTTTGCGAGAACAA 59.643 40.909 0.00 0.00 43.34 2.83
148 149 2.963782 ACTCCTACTTCTGTTCCGTGTT 59.036 45.455 0.00 0.00 0.00 3.32
152 153 4.922103 GTGTTAACTCCTACTTCTGTTCCG 59.078 45.833 7.22 0.00 0.00 4.30
166 177 5.063564 GCTGTAGCCTGTAATGTGTTAACTC 59.936 44.000 7.22 3.79 34.31 3.01
168 179 4.935808 AGCTGTAGCCTGTAATGTGTTAAC 59.064 41.667 0.00 0.00 43.38 2.01
216 227 1.545204 GGTAAACCTTTGGCGTACCCA 60.545 52.381 0.00 0.00 43.51 4.51
217 228 1.167851 GGTAAACCTTTGGCGTACCC 58.832 55.000 5.48 0.00 32.43 3.69
218 229 1.894881 TGGTAAACCTTTGGCGTACC 58.105 50.000 0.02 8.54 36.51 3.34
219 230 3.064408 GCTATGGTAAACCTTTGGCGTAC 59.936 47.826 0.02 0.00 36.82 3.67
220 231 3.272581 GCTATGGTAAACCTTTGGCGTA 58.727 45.455 0.02 0.00 36.82 4.42
221 232 2.089201 GCTATGGTAAACCTTTGGCGT 58.911 47.619 0.02 0.00 36.82 5.68
222 233 1.404035 GGCTATGGTAAACCTTTGGCG 59.596 52.381 0.02 0.00 33.76 5.69
223 234 2.735151 AGGCTATGGTAAACCTTTGGC 58.265 47.619 12.58 12.58 39.96 4.52
224 235 7.514721 TCTATAAGGCTATGGTAAACCTTTGG 58.485 38.462 0.02 0.00 42.45 3.28
225 236 8.974060 TTCTATAAGGCTATGGTAAACCTTTG 57.026 34.615 0.02 0.00 42.45 2.77
226 237 8.999895 TCTTCTATAAGGCTATGGTAAACCTTT 58.000 33.333 0.02 0.00 42.45 3.11
227 238 8.562949 TCTTCTATAAGGCTATGGTAAACCTT 57.437 34.615 0.02 0.00 44.56 3.50
228 239 8.743636 ATCTTCTATAAGGCTATGGTAAACCT 57.256 34.615 0.02 0.00 33.42 3.50
253 264 9.632638 ACCTACCGTGTAATCTCTTATAGTTTA 57.367 33.333 0.00 0.00 0.00 2.01
254 265 8.530804 ACCTACCGTGTAATCTCTTATAGTTT 57.469 34.615 0.00 0.00 0.00 2.66
255 266 9.282569 CTACCTACCGTGTAATCTCTTATAGTT 57.717 37.037 0.00 0.00 0.00 2.24
256 267 8.654997 TCTACCTACCGTGTAATCTCTTATAGT 58.345 37.037 0.00 0.00 0.00 2.12
257 268 9.669887 ATCTACCTACCGTGTAATCTCTTATAG 57.330 37.037 0.00 0.00 0.00 1.31
259 270 9.669887 CTATCTACCTACCGTGTAATCTCTTAT 57.330 37.037 0.00 0.00 0.00 1.73
260 271 8.874156 TCTATCTACCTACCGTGTAATCTCTTA 58.126 37.037 0.00 0.00 0.00 2.10
261 272 7.661027 GTCTATCTACCTACCGTGTAATCTCTT 59.339 40.741 0.00 0.00 0.00 2.85
262 273 7.160726 GTCTATCTACCTACCGTGTAATCTCT 58.839 42.308 0.00 0.00 0.00 3.10
263 274 6.371271 GGTCTATCTACCTACCGTGTAATCTC 59.629 46.154 0.00 0.00 36.53 2.75
264 275 6.237154 GGTCTATCTACCTACCGTGTAATCT 58.763 44.000 0.00 0.00 36.53 2.40
265 276 6.493449 GGTCTATCTACCTACCGTGTAATC 57.507 45.833 0.00 0.00 36.53 1.75
277 288 1.337387 GCCGTGTGAGGTCTATCTACC 59.663 57.143 0.00 0.00 40.06 3.18
278 289 1.002684 CGCCGTGTGAGGTCTATCTAC 60.003 57.143 0.00 0.00 0.00 2.59
279 290 1.306148 CGCCGTGTGAGGTCTATCTA 58.694 55.000 0.00 0.00 0.00 1.98
280 291 2.005960 GCGCCGTGTGAGGTCTATCT 62.006 60.000 0.00 0.00 0.00 1.98
281 292 1.589196 GCGCCGTGTGAGGTCTATC 60.589 63.158 0.00 0.00 0.00 2.08
282 293 1.676678 ATGCGCCGTGTGAGGTCTAT 61.677 55.000 4.18 0.00 0.00 1.98
283 294 2.279502 GATGCGCCGTGTGAGGTCTA 62.280 60.000 4.18 0.00 0.00 2.59
284 295 3.649277 GATGCGCCGTGTGAGGTCT 62.649 63.158 4.18 0.00 0.00 3.85
285 296 3.188786 GATGCGCCGTGTGAGGTC 61.189 66.667 4.18 0.00 0.00 3.85
286 297 4.760047 GGATGCGCCGTGTGAGGT 62.760 66.667 4.18 0.00 0.00 3.85
287 298 4.758251 TGGATGCGCCGTGTGAGG 62.758 66.667 4.18 0.00 40.66 3.86
288 299 3.490759 GTGGATGCGCCGTGTGAG 61.491 66.667 4.18 0.00 40.66 3.51
292 303 4.155733 TAGGGTGGATGCGCCGTG 62.156 66.667 20.64 0.00 40.66 4.94
293 304 4.157120 GTAGGGTGGATGCGCCGT 62.157 66.667 16.41 16.41 40.66 5.68
294 305 4.910585 GGTAGGGTGGATGCGCCG 62.911 72.222 10.99 0.00 40.66 6.46
295 306 4.564110 GGGTAGGGTGGATGCGCC 62.564 72.222 8.55 8.55 37.10 6.53
296 307 3.462199 GAGGGTAGGGTGGATGCGC 62.462 68.421 0.00 0.00 0.00 6.09
297 308 2.808206 GGAGGGTAGGGTGGATGCG 61.808 68.421 0.00 0.00 0.00 4.73
298 309 1.692749 TGGAGGGTAGGGTGGATGC 60.693 63.158 0.00 0.00 0.00 3.91
299 310 0.620410 TGTGGAGGGTAGGGTGGATG 60.620 60.000 0.00 0.00 0.00 3.51
300 311 0.120377 TTGTGGAGGGTAGGGTGGAT 59.880 55.000 0.00 0.00 0.00 3.41
301 312 0.546747 CTTGTGGAGGGTAGGGTGGA 60.547 60.000 0.00 0.00 0.00 4.02
302 313 0.546747 TCTTGTGGAGGGTAGGGTGG 60.547 60.000 0.00 0.00 0.00 4.61
303 314 0.905357 CTCTTGTGGAGGGTAGGGTG 59.095 60.000 0.00 0.00 38.35 4.61
304 315 0.910088 GCTCTTGTGGAGGGTAGGGT 60.910 60.000 0.00 0.00 42.08 4.34
305 316 0.909610 TGCTCTTGTGGAGGGTAGGG 60.910 60.000 0.00 0.00 42.08 3.53
306 317 0.984230 TTGCTCTTGTGGAGGGTAGG 59.016 55.000 0.00 0.00 42.08 3.18
307 318 2.859165 TTTGCTCTTGTGGAGGGTAG 57.141 50.000 0.00 0.00 42.08 3.18
308 319 3.844211 ACTATTTGCTCTTGTGGAGGGTA 59.156 43.478 0.00 0.00 42.08 3.69
309 320 2.644798 ACTATTTGCTCTTGTGGAGGGT 59.355 45.455 0.00 0.00 42.08 4.34
310 321 3.356529 ACTATTTGCTCTTGTGGAGGG 57.643 47.619 0.00 0.00 42.08 4.30
311 322 4.326826 TGAACTATTTGCTCTTGTGGAGG 58.673 43.478 0.00 0.00 42.08 4.30
312 323 5.947228 TTGAACTATTTGCTCTTGTGGAG 57.053 39.130 0.00 0.00 44.49 3.86
313 324 6.707440 TTTTGAACTATTTGCTCTTGTGGA 57.293 33.333 0.00 0.00 0.00 4.02
314 325 5.403466 GCTTTTGAACTATTTGCTCTTGTGG 59.597 40.000 0.00 0.00 0.00 4.17
315 326 6.211515 AGCTTTTGAACTATTTGCTCTTGTG 58.788 36.000 0.00 0.00 0.00 3.33
316 327 6.396829 AGCTTTTGAACTATTTGCTCTTGT 57.603 33.333 0.00 0.00 0.00 3.16
317 328 7.810658 TCTAGCTTTTGAACTATTTGCTCTTG 58.189 34.615 0.00 0.00 0.00 3.02
365 376 8.796475 AGATAATAAAATCCATCATTTGTCGGG 58.204 33.333 0.00 0.00 34.69 5.14
389 400 3.754850 CCACTTGATGCTTCATGTTGAGA 59.245 43.478 15.78 0.00 37.96 3.27
392 403 4.421058 CATCCACTTGATGCTTCATGTTG 58.579 43.478 15.78 13.36 44.16 3.33
414 425 4.201513 CGCATATGTGTTCATTGTGTTTGC 60.202 41.667 8.16 0.00 35.70 3.68
432 443 4.081476 AGCTATGCATAGTTCCATCGCATA 60.081 41.667 29.62 0.00 42.88 3.14
434 445 2.037641 AGCTATGCATAGTTCCATCGCA 59.962 45.455 29.62 0.00 33.92 5.10
435 446 2.693069 AGCTATGCATAGTTCCATCGC 58.307 47.619 29.62 16.62 32.27 4.58
439 450 6.016555 TGTATCCTAGCTATGCATAGTTCCA 58.983 40.000 29.62 14.68 32.96 3.53
440 451 6.071334 TGTGTATCCTAGCTATGCATAGTTCC 60.071 42.308 29.62 16.39 32.96 3.62
469 480 0.462759 TGTGCGTGTGTTGATGGTGA 60.463 50.000 0.00 0.00 0.00 4.02
472 483 2.420628 ATTTGTGCGTGTGTTGATGG 57.579 45.000 0.00 0.00 0.00 3.51
560 603 2.860009 CAAGTCCATCTGATCCATGGG 58.140 52.381 13.02 0.00 41.25 4.00
562 605 1.871676 CGCAAGTCCATCTGATCCATG 59.128 52.381 0.00 0.00 0.00 3.66
564 607 1.134699 GTCGCAAGTCCATCTGATCCA 60.135 52.381 0.00 0.00 39.48 3.41
585 628 9.848710 ATATCTGCAGGGAATATGAAATATCTG 57.151 33.333 15.13 0.00 38.94 2.90
586 629 9.848710 CATATCTGCAGGGAATATGAAATATCT 57.151 33.333 21.18 0.00 38.94 1.98
643 706 4.491602 GCTCAGATTCAACTTCATTCGACG 60.492 45.833 0.00 0.00 0.00 5.12
644 707 4.201763 GGCTCAGATTCAACTTCATTCGAC 60.202 45.833 0.00 0.00 0.00 4.20
645 708 3.935203 GGCTCAGATTCAACTTCATTCGA 59.065 43.478 0.00 0.00 0.00 3.71
646 709 3.686241 TGGCTCAGATTCAACTTCATTCG 59.314 43.478 0.00 0.00 0.00 3.34
688 752 6.132791 TGGTACACAAATAGTCTCTCGATC 57.867 41.667 0.00 0.00 0.00 3.69
689 753 5.450688 GCTGGTACACAAATAGTCTCTCGAT 60.451 44.000 0.00 0.00 0.00 3.59
690 754 4.142447 GCTGGTACACAAATAGTCTCTCGA 60.142 45.833 0.00 0.00 0.00 4.04
691 755 4.106197 GCTGGTACACAAATAGTCTCTCG 58.894 47.826 0.00 0.00 0.00 4.04
729 793 4.867047 AGCTATCTGTTCAGTTGTTCATCG 59.133 41.667 0.00 0.00 0.00 3.84
739 803 5.960113 AGACTTGTGTAGCTATCTGTTCAG 58.040 41.667 0.00 0.00 0.00 3.02
796 860 3.521995 ACGAGAGTGCAACATCTGG 57.478 52.632 2.30 4.14 46.97 3.86
910 974 5.188327 TCTGTATACTTCTTGATCTGGCG 57.812 43.478 4.17 0.00 0.00 5.69
936 1000 6.460781 TGTATACTTTTTCTTTCTGCGGAGA 58.539 36.000 0.98 0.98 0.00 3.71
937 1001 6.590292 TCTGTATACTTTTTCTTTCTGCGGAG 59.410 38.462 4.17 0.00 0.00 4.63
938 1002 6.460781 TCTGTATACTTTTTCTTTCTGCGGA 58.539 36.000 4.17 0.00 0.00 5.54
939 1003 6.673316 GCTCTGTATACTTTTTCTTTCTGCGG 60.673 42.308 4.17 0.00 0.00 5.69
957 1021 2.758979 GCTACCTAGTGTTGGCTCTGTA 59.241 50.000 0.00 0.00 0.00 2.74
1335 1407 2.338620 CCGTCCGTGAAGTGCTCA 59.661 61.111 0.00 0.00 0.00 4.26
1438 1531 2.125753 CTCCACCAGCAGCTCGAC 60.126 66.667 0.00 0.00 0.00 4.20
1569 1662 0.811616 CAAGCTCGCCCCTGATGTAC 60.812 60.000 0.00 0.00 0.00 2.90
1798 1891 0.824109 TAGCTTCCGGATCAGGTGTG 59.176 55.000 16.39 4.77 0.00 3.82
1922 2029 9.427821 ACAGTCTTATATTATGAGACAAGGAGT 57.572 33.333 23.13 13.68 45.35 3.85
1928 2035 9.665719 TGCAAAACAGTCTTATATTATGAGACA 57.334 29.630 23.13 4.87 45.35 3.41
1931 2038 9.443283 GCTTGCAAAACAGTCTTATATTATGAG 57.557 33.333 0.00 0.00 0.00 2.90
1932 2039 9.177608 AGCTTGCAAAACAGTCTTATATTATGA 57.822 29.630 0.00 0.00 0.00 2.15
1933 2040 9.229784 CAGCTTGCAAAACAGTCTTATATTATG 57.770 33.333 0.00 0.00 0.00 1.90
1934 2041 9.177608 TCAGCTTGCAAAACAGTCTTATATTAT 57.822 29.630 0.00 0.00 0.00 1.28
1935 2042 8.560355 TCAGCTTGCAAAACAGTCTTATATTA 57.440 30.769 0.00 0.00 0.00 0.98
1936 2043 7.452880 TCAGCTTGCAAAACAGTCTTATATT 57.547 32.000 0.00 0.00 0.00 1.28
1937 2044 7.636150 ATCAGCTTGCAAAACAGTCTTATAT 57.364 32.000 0.00 0.00 0.00 0.86
1938 2045 7.452880 AATCAGCTTGCAAAACAGTCTTATA 57.547 32.000 0.00 0.00 0.00 0.98
1939 2046 5.972107 ATCAGCTTGCAAAACAGTCTTAT 57.028 34.783 0.00 0.00 0.00 1.73
1940 2047 5.772825 AATCAGCTTGCAAAACAGTCTTA 57.227 34.783 0.00 0.00 0.00 2.10
1941 2048 4.660789 AATCAGCTTGCAAAACAGTCTT 57.339 36.364 0.00 0.00 0.00 3.01
1942 2049 4.217118 CCTAATCAGCTTGCAAAACAGTCT 59.783 41.667 0.00 0.00 0.00 3.24
1943 2050 4.479619 CCTAATCAGCTTGCAAAACAGTC 58.520 43.478 0.00 0.00 0.00 3.51
1944 2051 3.256631 CCCTAATCAGCTTGCAAAACAGT 59.743 43.478 0.00 0.00 0.00 3.55
1945 2052 3.507233 TCCCTAATCAGCTTGCAAAACAG 59.493 43.478 0.00 0.00 0.00 3.16
1946 2053 3.495331 TCCCTAATCAGCTTGCAAAACA 58.505 40.909 0.00 0.00 0.00 2.83
1947 2054 3.507622 ACTCCCTAATCAGCTTGCAAAAC 59.492 43.478 0.00 0.00 0.00 2.43
1948 2055 3.766545 ACTCCCTAATCAGCTTGCAAAA 58.233 40.909 0.00 0.00 0.00 2.44
1949 2056 3.439857 ACTCCCTAATCAGCTTGCAAA 57.560 42.857 0.00 0.00 0.00 3.68
1950 2057 3.774766 TCTACTCCCTAATCAGCTTGCAA 59.225 43.478 0.00 0.00 0.00 4.08
1951 2058 3.374764 TCTACTCCCTAATCAGCTTGCA 58.625 45.455 0.00 0.00 0.00 4.08
1952 2059 4.141824 ACTTCTACTCCCTAATCAGCTTGC 60.142 45.833 0.00 0.00 0.00 4.01
1953 2060 5.606348 ACTTCTACTCCCTAATCAGCTTG 57.394 43.478 0.00 0.00 0.00 4.01
1954 2061 5.129650 GGAACTTCTACTCCCTAATCAGCTT 59.870 44.000 0.00 0.00 0.00 3.74
1955 2062 4.651962 GGAACTTCTACTCCCTAATCAGCT 59.348 45.833 0.00 0.00 0.00 4.24
1956 2063 4.500035 CGGAACTTCTACTCCCTAATCAGC 60.500 50.000 0.00 0.00 0.00 4.26
1957 2064 4.500035 GCGGAACTTCTACTCCCTAATCAG 60.500 50.000 0.00 0.00 0.00 2.90
1958 2065 3.383825 GCGGAACTTCTACTCCCTAATCA 59.616 47.826 0.00 0.00 0.00 2.57
1959 2066 3.550436 CGCGGAACTTCTACTCCCTAATC 60.550 52.174 0.00 0.00 0.00 1.75
1960 2067 2.361438 CGCGGAACTTCTACTCCCTAAT 59.639 50.000 0.00 0.00 0.00 1.73
1961 2068 1.747355 CGCGGAACTTCTACTCCCTAA 59.253 52.381 0.00 0.00 0.00 2.69
1962 2069 1.386533 CGCGGAACTTCTACTCCCTA 58.613 55.000 0.00 0.00 0.00 3.53
1963 2070 1.321074 CCGCGGAACTTCTACTCCCT 61.321 60.000 24.07 0.00 0.00 4.20
1964 2071 1.141234 CCGCGGAACTTCTACTCCC 59.859 63.158 24.07 0.00 0.00 4.30
1965 2072 0.245813 AACCGCGGAACTTCTACTCC 59.754 55.000 35.90 0.00 0.00 3.85
1966 2073 1.068055 TGAACCGCGGAACTTCTACTC 60.068 52.381 35.90 13.09 0.00 2.59
1967 2074 0.963962 TGAACCGCGGAACTTCTACT 59.036 50.000 35.90 1.64 0.00 2.57
1968 2075 1.659098 CATGAACCGCGGAACTTCTAC 59.341 52.381 35.90 13.10 0.00 2.59
1977 2084 1.295357 TGTTGCTACATGAACCGCGG 61.295 55.000 26.86 26.86 0.00 6.46
2018 2125 6.295067 GGGTGTAGCCACAACTTTTTCAATAT 60.295 38.462 0.00 0.00 42.41 1.28
2019 2126 5.010213 GGGTGTAGCCACAACTTTTTCAATA 59.990 40.000 0.00 0.00 42.41 1.90
2020 2127 4.202212 GGGTGTAGCCACAACTTTTTCAAT 60.202 41.667 0.00 0.00 42.41 2.57
2021 2128 3.131400 GGGTGTAGCCACAACTTTTTCAA 59.869 43.478 0.00 0.00 42.41 2.69
2022 2129 2.691011 GGGTGTAGCCACAACTTTTTCA 59.309 45.455 0.00 0.00 42.41 2.69
2023 2130 2.691011 TGGGTGTAGCCACAACTTTTTC 59.309 45.455 0.00 0.00 42.41 2.29
2024 2131 2.693074 CTGGGTGTAGCCACAACTTTTT 59.307 45.455 0.00 0.00 42.41 1.94
2040 2147 1.153168 GTGTGCAGTGTGTCTGGGT 60.153 57.895 0.00 0.00 43.78 4.51
2046 2153 1.024271 GGTGATTGTGTGCAGTGTGT 58.976 50.000 0.00 0.00 0.00 3.72
2057 2164 6.899393 ATGACAAATGTTGTAGGTGATTGT 57.101 33.333 0.00 0.00 45.52 2.71
2075 2182 8.681806 TGAAACTTTGTGACTTTGATTATGACA 58.318 29.630 0.00 0.00 0.00 3.58
2089 2196 8.282592 CGAGTCATAATTTCTGAAACTTTGTGA 58.717 33.333 4.73 8.13 0.00 3.58
2105 2212 8.689061 TGTAGTTGTTATACACCGAGTCATAAT 58.311 33.333 0.00 0.00 0.00 1.28
2107 2214 7.475015 GTGTAGTTGTTATACACCGAGTCATA 58.525 38.462 5.18 0.00 44.68 2.15
2108 2215 6.327934 GTGTAGTTGTTATACACCGAGTCAT 58.672 40.000 5.18 0.00 44.68 3.06
2121 2228 6.309494 GTCACGCAATATCAGTGTAGTTGTTA 59.691 38.462 0.00 0.00 37.20 2.41
2128 2235 7.762159 TCATTTTAGTCACGCAATATCAGTGTA 59.238 33.333 0.00 0.00 37.20 2.90
2131 2238 7.609760 TTCATTTTAGTCACGCAATATCAGT 57.390 32.000 0.00 0.00 0.00 3.41
2152 2259 2.500229 GTTCGGATTGGTGTCCTTTCA 58.500 47.619 0.00 0.00 36.07 2.69
2156 2263 0.395312 AACGTTCGGATTGGTGTCCT 59.605 50.000 0.00 0.00 36.07 3.85
2158 2265 1.193874 GTGAACGTTCGGATTGGTGTC 59.806 52.381 22.48 0.00 0.00 3.67
2159 2266 1.202604 AGTGAACGTTCGGATTGGTGT 60.203 47.619 22.48 0.00 0.00 4.16
2160 2267 1.194547 CAGTGAACGTTCGGATTGGTG 59.805 52.381 22.48 8.46 0.00 4.17
2161 2268 1.508632 CAGTGAACGTTCGGATTGGT 58.491 50.000 22.48 0.00 0.00 3.67
2163 2270 1.790755 TCCAGTGAACGTTCGGATTG 58.209 50.000 22.48 16.29 0.00 2.67
2165 2272 2.413837 CTTTCCAGTGAACGTTCGGAT 58.586 47.619 22.48 8.69 0.00 4.18
2166 2273 1.860676 CTTTCCAGTGAACGTTCGGA 58.139 50.000 22.48 19.27 0.00 4.55
2167 2274 0.234884 GCTTTCCAGTGAACGTTCGG 59.765 55.000 22.48 17.37 0.00 4.30
2168 2275 0.934496 TGCTTTCCAGTGAACGTTCG 59.066 50.000 22.48 9.02 0.00 3.95
2169 2276 2.350772 CCATGCTTTCCAGTGAACGTTC 60.351 50.000 21.42 21.42 0.00 3.95
2170 2277 1.608590 CCATGCTTTCCAGTGAACGTT 59.391 47.619 0.00 0.00 0.00 3.99
2171 2278 1.238439 CCATGCTTTCCAGTGAACGT 58.762 50.000 0.00 0.00 0.00 3.99
2172 2279 0.109597 GCCATGCTTTCCAGTGAACG 60.110 55.000 0.00 0.00 0.00 3.95
2173 2280 0.961019 TGCCATGCTTTCCAGTGAAC 59.039 50.000 0.00 0.00 0.00 3.18
2174 2281 1.927487 ATGCCATGCTTTCCAGTGAA 58.073 45.000 0.00 0.00 0.00 3.18
2175 2282 1.927487 AATGCCATGCTTTCCAGTGA 58.073 45.000 0.00 0.00 0.00 3.41
2176 2283 2.754946 AAATGCCATGCTTTCCAGTG 57.245 45.000 0.00 0.00 0.00 3.66
2177 2284 2.164219 CGTAAATGCCATGCTTTCCAGT 59.836 45.455 0.00 0.00 0.00 4.00
2178 2285 2.423185 TCGTAAATGCCATGCTTTCCAG 59.577 45.455 0.00 0.00 0.00 3.86
2179 2286 2.441410 TCGTAAATGCCATGCTTTCCA 58.559 42.857 0.00 0.00 0.00 3.53
2180 2287 3.502191 TTCGTAAATGCCATGCTTTCC 57.498 42.857 0.00 0.00 0.00 3.13
2181 2288 3.859386 CCTTTCGTAAATGCCATGCTTTC 59.141 43.478 0.00 0.00 0.00 2.62
2182 2289 3.848726 CCTTTCGTAAATGCCATGCTTT 58.151 40.909 0.00 0.00 0.00 3.51
2183 2290 2.417243 GCCTTTCGTAAATGCCATGCTT 60.417 45.455 0.00 0.00 0.00 3.91
2184 2291 1.134946 GCCTTTCGTAAATGCCATGCT 59.865 47.619 0.00 0.00 0.00 3.79
2185 2292 1.559831 GCCTTTCGTAAATGCCATGC 58.440 50.000 0.00 0.00 0.00 4.06
2190 2297 2.223572 CCATGAGGCCTTTCGTAAATGC 60.224 50.000 6.77 0.00 0.00 3.56
2191 2298 3.698029 CCATGAGGCCTTTCGTAAATG 57.302 47.619 6.77 2.91 0.00 2.32
2204 2311 1.682854 ACACACAAAACTGCCATGAGG 59.317 47.619 0.00 0.00 38.23 3.86
2205 2312 2.099592 ACACACACAAAACTGCCATGAG 59.900 45.455 0.00 0.00 0.00 2.90
2206 2313 2.098614 ACACACACAAAACTGCCATGA 58.901 42.857 0.00 0.00 0.00 3.07
2207 2314 2.195096 CACACACACAAAACTGCCATG 58.805 47.619 0.00 0.00 0.00 3.66
2208 2315 1.471327 GCACACACACAAAACTGCCAT 60.471 47.619 0.00 0.00 0.00 4.40
2209 2316 0.108898 GCACACACACAAAACTGCCA 60.109 50.000 0.00 0.00 0.00 4.92
2210 2317 1.139226 CGCACACACACAAAACTGCC 61.139 55.000 0.00 0.00 0.00 4.85
2211 2318 1.139226 CCGCACACACACAAAACTGC 61.139 55.000 0.00 0.00 0.00 4.40
2212 2319 0.449786 TCCGCACACACACAAAACTG 59.550 50.000 0.00 0.00 0.00 3.16
2213 2320 0.732571 CTCCGCACACACACAAAACT 59.267 50.000 0.00 0.00 0.00 2.66
2214 2321 0.730265 TCTCCGCACACACACAAAAC 59.270 50.000 0.00 0.00 0.00 2.43
2215 2322 1.013596 CTCTCCGCACACACACAAAA 58.986 50.000 0.00 0.00 0.00 2.44
2216 2323 0.813610 CCTCTCCGCACACACACAAA 60.814 55.000 0.00 0.00 0.00 2.83
2217 2324 1.227527 CCTCTCCGCACACACACAA 60.228 57.895 0.00 0.00 0.00 3.33
2218 2325 1.966901 AACCTCTCCGCACACACACA 61.967 55.000 0.00 0.00 0.00 3.72
2219 2326 1.227556 AACCTCTCCGCACACACAC 60.228 57.895 0.00 0.00 0.00 3.82
2220 2327 1.227527 CAACCTCTCCGCACACACA 60.228 57.895 0.00 0.00 0.00 3.72
2221 2328 1.961277 CCAACCTCTCCGCACACAC 60.961 63.158 0.00 0.00 0.00 3.82
2222 2329 2.425592 CCAACCTCTCCGCACACA 59.574 61.111 0.00 0.00 0.00 3.72
2223 2330 2.358737 CCCAACCTCTCCGCACAC 60.359 66.667 0.00 0.00 0.00 3.82
2224 2331 2.448582 AACCCAACCTCTCCGCACA 61.449 57.895 0.00 0.00 0.00 4.57
2225 2332 1.966451 CAACCCAACCTCTCCGCAC 60.966 63.158 0.00 0.00 0.00 5.34
2226 2333 2.429930 CAACCCAACCTCTCCGCA 59.570 61.111 0.00 0.00 0.00 5.69
2227 2334 2.359975 CCAACCCAACCTCTCCGC 60.360 66.667 0.00 0.00 0.00 5.54
2228 2335 2.359975 GCCAACCCAACCTCTCCG 60.360 66.667 0.00 0.00 0.00 4.63
2229 2336 0.251787 AATGCCAACCCAACCTCTCC 60.252 55.000 0.00 0.00 0.00 3.71
2230 2337 1.632589 AAATGCCAACCCAACCTCTC 58.367 50.000 0.00 0.00 0.00 3.20
2231 2338 2.101640 AAAATGCCAACCCAACCTCT 57.898 45.000 0.00 0.00 0.00 3.69
2232 2339 2.928801 AAAAATGCCAACCCAACCTC 57.071 45.000 0.00 0.00 0.00 3.85
2297 2404 0.111001 CTGACGGTGGCGTTTTTACG 60.111 55.000 0.00 0.00 0.00 3.18
2298 2405 1.219646 TCTGACGGTGGCGTTTTTAC 58.780 50.000 0.00 0.00 0.00 2.01
2299 2406 1.801771 CATCTGACGGTGGCGTTTTTA 59.198 47.619 0.00 0.00 0.00 1.52
2300 2407 0.591170 CATCTGACGGTGGCGTTTTT 59.409 50.000 0.00 0.00 0.00 1.94
2301 2408 1.852067 GCATCTGACGGTGGCGTTTT 61.852 55.000 0.00 0.00 0.00 2.43
2302 2409 2.325082 GCATCTGACGGTGGCGTTT 61.325 57.895 0.00 0.00 0.00 3.60
2303 2410 2.742372 GCATCTGACGGTGGCGTT 60.742 61.111 0.00 0.00 0.00 4.84
2304 2411 3.939837 CTGCATCTGACGGTGGCGT 62.940 63.158 0.00 0.00 0.00 5.68
2305 2412 2.913054 ATCTGCATCTGACGGTGGCG 62.913 60.000 0.00 0.00 0.00 5.69
2306 2413 1.153289 ATCTGCATCTGACGGTGGC 60.153 57.895 0.00 0.00 0.00 5.01
2307 2414 0.463204 AGATCTGCATCTGACGGTGG 59.537 55.000 0.00 0.00 38.03 4.61
2308 2415 3.119291 GTTAGATCTGCATCTGACGGTG 58.881 50.000 5.18 0.00 39.90 4.94
2309 2416 3.444703 GTTAGATCTGCATCTGACGGT 57.555 47.619 5.18 0.00 39.90 4.83
2312 2419 3.717400 TCCGTTAGATCTGCATCTGAC 57.283 47.619 5.18 1.52 40.64 3.51
2313 2420 4.511617 GATCCGTTAGATCTGCATCTGA 57.488 45.455 5.18 0.00 46.85 3.27
2323 2430 2.214920 GCCCCCGGATCCGTTAGAT 61.215 63.158 31.22 0.00 38.17 1.98
2324 2431 2.841044 GCCCCCGGATCCGTTAGA 60.841 66.667 31.22 0.00 37.81 2.10
2325 2432 4.295119 CGCCCCCGGATCCGTTAG 62.295 72.222 31.22 19.69 37.81 2.34
2331 2438 4.886121 GACGAACGCCCCCGGATC 62.886 72.222 0.73 0.00 39.22 3.36
2335 2442 3.733344 ATCATGACGAACGCCCCCG 62.733 63.158 0.00 0.00 41.14 5.73
2336 2443 1.887707 GATCATGACGAACGCCCCC 60.888 63.158 0.00 0.00 0.00 5.40
2337 2444 1.144057 AGATCATGACGAACGCCCC 59.856 57.895 0.00 0.00 0.00 5.80
2338 2445 1.154205 CCAGATCATGACGAACGCCC 61.154 60.000 0.00 0.00 0.00 6.13
2339 2446 0.460284 ACCAGATCATGACGAACGCC 60.460 55.000 0.00 0.00 0.00 5.68
2340 2447 1.324736 GAACCAGATCATGACGAACGC 59.675 52.381 0.00 0.00 0.00 4.84
2341 2448 1.927174 GGAACCAGATCATGACGAACG 59.073 52.381 0.00 0.00 0.00 3.95
2360 2467 4.215742 TATCTGGCGAACGCGGGG 62.216 66.667 12.47 0.00 43.06 5.73
2361 2468 2.658593 CTATCTGGCGAACGCGGG 60.659 66.667 12.47 0.00 43.06 6.13
2362 2469 3.330853 GCTATCTGGCGAACGCGG 61.331 66.667 12.47 8.46 43.06 6.46
2363 2470 1.490693 AATGCTATCTGGCGAACGCG 61.491 55.000 3.53 3.53 43.06 6.01
2364 2471 0.657840 AAATGCTATCTGGCGAACGC 59.342 50.000 10.81 10.81 41.06 4.84
2365 2472 1.261619 GGAAATGCTATCTGGCGAACG 59.738 52.381 0.00 0.00 34.52 3.95
2366 2473 1.604278 GGGAAATGCTATCTGGCGAAC 59.396 52.381 0.00 0.00 34.52 3.95
2367 2474 1.211703 TGGGAAATGCTATCTGGCGAA 59.788 47.619 0.00 0.00 34.52 4.70
2368 2475 0.836606 TGGGAAATGCTATCTGGCGA 59.163 50.000 0.00 0.00 34.52 5.54
2369 2476 1.679139 TTGGGAAATGCTATCTGGCG 58.321 50.000 0.00 0.00 34.52 5.69
2370 2477 2.223572 CGTTTGGGAAATGCTATCTGGC 60.224 50.000 0.00 0.00 0.00 4.85
2371 2478 2.358898 CCGTTTGGGAAATGCTATCTGG 59.641 50.000 0.00 0.00 38.47 3.86
2372 2479 3.278574 TCCGTTTGGGAAATGCTATCTG 58.721 45.455 0.00 0.00 43.62 2.90
2373 2480 3.644966 TCCGTTTGGGAAATGCTATCT 57.355 42.857 0.00 0.00 43.62 1.98
2388 2495 4.826274 TTGATGATTCTCTCCTTCCGTT 57.174 40.909 0.00 0.00 0.00 4.44
2398 2505 7.565848 CGTGAAAGATCAGATTGATGATTCTC 58.434 38.462 0.00 2.26 40.02 2.87
2423 2530 5.172934 CCATGTTATATCCATGCAAATGGC 58.827 41.667 1.12 0.00 41.43 4.40
2424 2531 5.481122 TCCCATGTTATATCCATGCAAATGG 59.519 40.000 0.00 0.00 43.01 3.16
2444 2551 0.703488 TTGTGGCCATGAAGATCCCA 59.297 50.000 9.72 0.00 0.00 4.37
2445 2552 1.478105 GTTTGTGGCCATGAAGATCCC 59.522 52.381 9.72 0.00 0.00 3.85
2446 2553 1.478105 GGTTTGTGGCCATGAAGATCC 59.522 52.381 9.72 5.80 0.00 3.36
2457 2564 2.920647 GCATGTAGTTTCGGTTTGTGGC 60.921 50.000 0.00 0.00 0.00 5.01
2465 2572 3.792401 TGTCCATAGCATGTAGTTTCGG 58.208 45.455 0.00 0.00 0.00 4.30
2466 2573 8.757164 TTATATGTCCATAGCATGTAGTTTCG 57.243 34.615 0.00 0.00 0.00 3.46
2480 2587 8.128582 CGCAAAGTGTTGTATTTATATGTCCAT 58.871 33.333 0.00 0.00 37.06 3.41
2499 2606 2.766313 TCAGCATTGTAGTCGCAAAGT 58.234 42.857 0.00 0.00 31.63 2.66
2514 2621 9.591792 GCACTGTATCATATTCTTATATCAGCA 57.408 33.333 0.00 0.00 0.00 4.41
2539 2777 3.089784 CGTGAGTACGCCAATGGC 58.910 61.111 15.52 15.52 44.11 4.40
2562 2800 7.171630 AGTTATTCGTGGATCTCACTAGTTT 57.828 36.000 11.12 0.00 43.94 2.66
2565 2803 6.697892 GGAAAGTTATTCGTGGATCTCACTAG 59.302 42.308 11.12 0.00 43.94 2.57
2603 2847 6.835488 TCTGCTGGCAGGAGAAATAAAAATAT 59.165 34.615 32.78 0.00 39.82 1.28
2604 2848 6.186957 TCTGCTGGCAGGAGAAATAAAAATA 58.813 36.000 32.78 9.27 39.82 1.40
2611 2855 1.562942 TCATCTGCTGGCAGGAGAAAT 59.437 47.619 36.85 22.30 45.79 2.17
2620 2864 0.170561 CTGCACTTTCATCTGCTGGC 59.829 55.000 0.00 0.00 34.29 4.85
2621 2865 0.809385 CCTGCACTTTCATCTGCTGG 59.191 55.000 1.74 1.74 43.49 4.85
2622 2866 0.809385 CCCTGCACTTTCATCTGCTG 59.191 55.000 0.00 0.00 34.29 4.41
2623 2867 0.323178 CCCCTGCACTTTCATCTGCT 60.323 55.000 0.00 0.00 34.29 4.24
2634 2878 1.984026 CCCAATCAACCCCCTGCAC 60.984 63.158 0.00 0.00 0.00 4.57
2638 2882 1.357761 CAGTAACCCAATCAACCCCCT 59.642 52.381 0.00 0.00 0.00 4.79
2640 2884 2.891191 TCAGTAACCCAATCAACCCC 57.109 50.000 0.00 0.00 0.00 4.95
2643 2887 6.569780 ACAAACTTTCAGTAACCCAATCAAC 58.430 36.000 0.00 0.00 0.00 3.18
2663 2907 5.926542 CAGTTTCCTCTAACATCTCGACAAA 59.073 40.000 0.00 0.00 0.00 2.83
2698 2942 4.348863 AGTGTGTCTCAAAATCTCTGCT 57.651 40.909 0.00 0.00 0.00 4.24
2701 2945 6.825721 AGAAACAAGTGTGTCTCAAAATCTCT 59.174 34.615 0.00 0.00 38.16 3.10
2711 2955 4.142600 GCAACAAGAGAAACAAGTGTGTCT 60.143 41.667 3.71 3.71 44.90 3.41
2752 2996 0.179111 TTCCGCGATCACTCATGGAC 60.179 55.000 8.23 0.00 0.00 4.02
2766 3010 7.331193 ACGGATAGAGAAATAATAACATTCCGC 59.669 37.037 0.00 0.00 43.64 5.54
2767 3011 8.648097 CACGGATAGAGAAATAATAACATTCCG 58.352 37.037 0.00 0.00 44.92 4.30
2768 3012 8.936864 CCACGGATAGAGAAATAATAACATTCC 58.063 37.037 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.