Multiple sequence alignment - TraesCS6A01G146500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G146500 chr6A 100.000 4840 0 0 1 4840 125499985 125495146 0.000000e+00 8938.0
1 TraesCS6A01G146500 chr6A 92.958 71 5 0 4432 4502 125495492 125495422 2.380000e-18 104.0
2 TraesCS6A01G146500 chr6A 92.958 71 5 0 4494 4564 125495554 125495484 2.380000e-18 104.0
3 TraesCS6A01G146500 chr6D 93.653 1812 71 26 824 2612 104141602 104139812 0.000000e+00 2669.0
4 TraesCS6A01G146500 chr6D 92.920 1356 58 15 2676 4002 104139795 104138449 0.000000e+00 1938.0
5 TraesCS6A01G146500 chr6D 90.939 309 21 7 1 306 104142412 104142108 4.510000e-110 409.0
6 TraesCS6A01G146500 chr6D 82.265 468 63 14 306 768 104142064 104141612 2.110000e-103 387.0
7 TraesCS6A01G146500 chr6D 85.656 244 20 7 4601 4840 104136653 104136421 4.840000e-60 243.0
8 TraesCS6A01G146500 chr6D 94.737 114 5 1 4000 4112 104138365 104138252 4.980000e-40 176.0
9 TraesCS6A01G146500 chr6D 79.295 227 35 8 4279 4495 58531909 58532133 1.090000e-31 148.0
10 TraesCS6A01G146500 chr6D 98.077 52 1 0 4576 4627 104136707 104136656 1.860000e-14 91.6
11 TraesCS6A01G146500 chr6B 91.297 1896 116 31 740 2611 189221387 189219517 0.000000e+00 2542.0
12 TraesCS6A01G146500 chr6B 93.417 1352 58 15 2676 4002 189219499 189218154 0.000000e+00 1975.0
13 TraesCS6A01G146500 chr6B 88.673 309 28 7 1 306 189274115 189273811 2.130000e-98 370.0
14 TraesCS6A01G146500 chr6B 84.328 268 27 8 306 560 189273767 189273502 1.040000e-61 248.0
15 TraesCS6A01G146500 chr6B 84.181 177 15 5 4060 4223 189217027 189216851 5.010000e-35 159.0
16 TraesCS6A01G146500 chr6B 97.674 43 1 0 4720 4762 140843152 140843110 1.870000e-09 75.0
17 TraesCS6A01G146500 chr2D 76.568 606 114 20 309 891 638775326 638774726 1.690000e-79 307.0
18 TraesCS6A01G146500 chr3B 78.360 439 81 13 306 735 214991461 214991894 6.170000e-69 272.0
19 TraesCS6A01G146500 chr3B 80.556 180 31 4 4327 4502 781536438 781536259 8.450000e-28 135.0
20 TraesCS6A01G146500 chr4D 76.221 471 98 13 306 766 464306285 464306751 2.250000e-58 237.0
21 TraesCS6A01G146500 chr7D 81.545 233 34 7 4279 4502 580318708 580318476 2.980000e-42 183.0
22 TraesCS6A01G146500 chr7D 87.037 54 6 1 817 870 541424513 541424565 5.230000e-05 60.2
23 TraesCS6A01G146500 chr5B 76.721 305 62 8 466 764 514105145 514105446 1.390000e-35 161.0
24 TraesCS6A01G146500 chrUn 74.026 308 61 13 580 870 94273725 94273420 1.840000e-19 108.0
25 TraesCS6A01G146500 chrUn 73.701 308 62 13 580 870 94303874 94303569 8.570000e-18 102.0
26 TraesCS6A01G146500 chr1A 72.755 323 69 13 565 870 588454002 588454322 1.860000e-14 91.6
27 TraesCS6A01G146500 chr4B 80.159 126 19 6 773 896 387439468 387439589 6.670000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G146500 chr6A 125495146 125499985 4839 True 8938.000000 8938 100.000000 1 4840 1 chr6A.!!$R1 4839
1 TraesCS6A01G146500 chr6D 104136421 104142412 5991 True 844.800000 2669 91.178143 1 4840 7 chr6D.!!$R1 4839
2 TraesCS6A01G146500 chr6B 189216851 189221387 4536 True 1558.666667 2542 89.631667 740 4223 3 chr6B.!!$R2 3483
3 TraesCS6A01G146500 chr6B 189273502 189274115 613 True 309.000000 370 86.500500 1 560 2 chr6B.!!$R3 559
4 TraesCS6A01G146500 chr2D 638774726 638775326 600 True 307.000000 307 76.568000 309 891 1 chr2D.!!$R1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
641 706 0.032952 GGTGTGTACGCAGTTGGAGA 59.967 55.0 9.91 0.0 37.78 3.71 F
820 902 0.035152 TATGCAGAGGCTGGGTGTTG 60.035 55.0 0.00 0.0 41.91 3.33 F
1891 1983 0.179018 ACTGGGTGTCAACCTGCTTC 60.179 55.0 13.43 0.0 46.70 3.86 F
2442 2565 0.813184 TCGTGGACGTGGTAAGATCC 59.187 55.0 0.00 0.0 40.80 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2638 2761 1.132689 AGGGGGAGTCTCTGAAACTGT 60.133 52.381 0.00 0.0 0.00 3.55 R
2639 2762 1.650528 AGGGGGAGTCTCTGAAACTG 58.349 55.000 0.00 0.0 0.00 3.16 R
3135 3264 1.334869 CACCTGAAGAAGCACAACACC 59.665 52.381 0.00 0.0 0.00 4.16 R
4191 6573 0.107831 TGACGTCCCAGGTTGGAAAG 59.892 55.000 14.12 0.0 40.96 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 1.931172 GATTAACCCGACACATGGACG 59.069 52.381 0.00 0.00 0.00 4.79
125 126 3.066380 CACATGGACGAGATGTGTTTCA 58.934 45.455 14.17 0.00 43.81 2.69
127 128 2.163818 TGGACGAGATGTGTTTCACC 57.836 50.000 0.00 0.00 32.73 4.02
143 144 4.819105 TTCACCGGAATCTCACTACATT 57.181 40.909 9.46 0.00 0.00 2.71
149 151 4.383118 CCGGAATCTCACTACATTTGGTCT 60.383 45.833 0.00 0.00 0.00 3.85
170 172 6.331061 GTCTTTCACGGTTGACTCTATGTAT 58.669 40.000 0.00 0.00 0.00 2.29
194 198 2.622436 GCTTACGCATTCTGAGGTTCT 58.378 47.619 0.00 0.00 35.78 3.01
268 272 6.710744 AGTTGAAATCTTCACGTGGTATCTTT 59.289 34.615 17.00 9.39 39.87 2.52
272 276 6.727824 AATCTTCACGTGGTATCTTTGAAG 57.272 37.500 17.00 8.52 42.99 3.02
287 291 9.152595 GTATCTTTGAAGGGAAGTTGTACTAAG 57.847 37.037 0.00 0.00 0.00 2.18
326 374 3.420893 GATGAGACAATCAAACACCCCA 58.579 45.455 0.00 0.00 42.53 4.96
396 447 3.250040 GCGTCTAATTTGTATTCGCCCAT 59.750 43.478 0.00 0.00 36.95 4.00
451 513 4.941873 GGACGATCCAAGTAGGTTCAAAAT 59.058 41.667 0.00 0.00 36.12 1.82
452 514 6.110707 GGACGATCCAAGTAGGTTCAAAATA 58.889 40.000 0.00 0.00 36.12 1.40
453 515 6.766467 GGACGATCCAAGTAGGTTCAAAATAT 59.234 38.462 0.00 0.00 36.12 1.28
470 532 8.650143 TCAAAATATTAATAAGGATGGGAGCC 57.350 34.615 0.00 0.00 0.00 4.70
486 549 5.162637 TGGGAGCCTATACCTGTTATGATT 58.837 41.667 0.00 0.00 0.00 2.57
554 619 7.575414 TGTTTTACTTTGCAGGTTATTCTCA 57.425 32.000 0.00 0.00 0.00 3.27
576 641 3.564644 AGCTGTACGTACTCGCTTCATAT 59.435 43.478 26.46 12.03 41.18 1.78
577 642 4.753610 AGCTGTACGTACTCGCTTCATATA 59.246 41.667 26.46 5.76 41.18 0.86
578 643 4.845060 GCTGTACGTACTCGCTTCATATAC 59.155 45.833 25.12 0.00 41.18 1.47
604 669 6.448006 GTCTATGCTATACCGATCAAAGTGT 58.552 40.000 0.00 0.00 0.00 3.55
618 683 7.015289 CGATCAAAGTGTCAATCGTTGTTTAT 58.985 34.615 0.00 0.00 36.99 1.40
620 685 7.252965 TCAAAGTGTCAATCGTTGTTTATGA 57.747 32.000 0.00 0.00 0.00 2.15
633 698 2.060284 GTTTATGACGGTGTGTACGCA 58.940 47.619 4.65 4.65 34.00 5.24
641 706 0.032952 GGTGTGTACGCAGTTGGAGA 59.967 55.000 9.91 0.00 37.78 3.71
642 707 1.337823 GGTGTGTACGCAGTTGGAGAT 60.338 52.381 9.91 0.00 37.78 2.75
655 720 3.720526 AGTTGGAGATGGTGATCATGGAT 59.279 43.478 0.00 0.00 35.97 3.41
663 728 7.232127 GGAGATGGTGATCATGGATGTTTTTAT 59.768 37.037 0.00 0.00 35.97 1.40
690 755 1.776063 TGGATGGCAGCATAATCTCCA 59.224 47.619 4.64 1.01 0.00 3.86
712 777 4.019681 CAGATTAGTCCACCACCACCTTTA 60.020 45.833 0.00 0.00 0.00 1.85
719 785 3.911260 TCCACCACCACCTTTAACATAGA 59.089 43.478 0.00 0.00 0.00 1.98
738 806 8.250143 ACATAGACATAGTGTGGTCATATGAA 57.750 34.615 7.07 0.00 36.50 2.57
750 818 9.638239 GTGTGGTCATATGAATTTTATGTTGTT 57.362 29.630 7.07 0.00 0.00 2.83
790 872 4.022416 TCAAAGTGTTGGTATTGGATGTGC 60.022 41.667 0.00 0.00 35.29 4.57
791 873 2.446435 AGTGTTGGTATTGGATGTGCC 58.554 47.619 0.00 0.00 37.10 5.01
820 902 0.035152 TATGCAGAGGCTGGGTGTTG 60.035 55.000 0.00 0.00 41.91 3.33
837 919 3.006323 GTGTTGCCCATCATGGTTTGTAA 59.994 43.478 2.07 0.00 35.17 2.41
1052 1134 2.242043 CCCAACTGTCAGGAAGCAATT 58.758 47.619 4.53 0.00 0.00 2.32
1080 1169 0.744414 ACATCGAAGCCCCAATCGTG 60.744 55.000 0.00 0.00 39.91 4.35
1166 1255 4.462834 CCCAACTATTCTTGTTTCCTTCCC 59.537 45.833 0.00 0.00 0.00 3.97
1167 1256 4.462834 CCAACTATTCTTGTTTCCTTCCCC 59.537 45.833 0.00 0.00 0.00 4.81
1170 1259 2.561478 TTCTTGTTTCCTTCCCCGAG 57.439 50.000 0.00 0.00 0.00 4.63
1200 1289 1.069378 CCGTCGACTTACGCTTCCAC 61.069 60.000 14.70 0.00 41.51 4.02
1292 1381 1.148723 AGAGGATCCATGCTGCAGC 59.851 57.895 31.89 31.89 37.43 5.25
1403 1492 1.373999 GCTGTCTGAACTCGCTGCT 60.374 57.895 0.00 0.00 0.00 4.24
1447 1536 2.087462 GAAGTGGTTGTTGCAGGGGC 62.087 60.000 0.00 0.00 41.68 5.80
1632 1724 2.945668 AGCTTTGTGTGGTTCTTCTGTC 59.054 45.455 0.00 0.00 0.00 3.51
1795 1887 5.479306 TGATCAGAGGTACTGCTTACAAAC 58.521 41.667 0.00 0.00 45.38 2.93
1886 1978 0.466189 CTTGCACTGGGTGTCAACCT 60.466 55.000 8.76 0.00 46.70 3.50
1891 1983 0.179018 ACTGGGTGTCAACCTGCTTC 60.179 55.000 13.43 0.00 46.70 3.86
1945 2041 7.148705 GCAACGAAACTGTAGTATGTACAATGA 60.149 37.037 0.00 0.00 0.00 2.57
1969 2065 4.987408 TGGCACAATGTATCCTCAAATG 57.013 40.909 5.64 0.00 31.92 2.32
1989 2085 9.932699 TCAAATGTTTGTTTGATTTTGCATTAG 57.067 25.926 5.48 0.00 41.70 1.73
1995 2091 9.423061 GTTTGTTTGATTTTGCATTAGGTCTAT 57.577 29.630 0.00 0.00 0.00 1.98
1996 2092 9.638239 TTTGTTTGATTTTGCATTAGGTCTATC 57.362 29.630 0.00 0.00 0.00 2.08
1997 2093 8.579850 TGTTTGATTTTGCATTAGGTCTATCT 57.420 30.769 0.00 0.00 0.00 1.98
2043 2139 7.867403 GTGAACTCAATTTATGTTGTCCATTGT 59.133 33.333 0.00 0.00 34.86 2.71
2044 2140 8.081633 TGAACTCAATTTATGTTGTCCATTGTC 58.918 33.333 0.00 0.00 34.86 3.18
2051 2147 2.683968 TGTTGTCCATTGTCGTAGAGC 58.316 47.619 0.00 0.00 36.95 4.09
2053 2149 3.244078 TGTTGTCCATTGTCGTAGAGCTT 60.244 43.478 0.00 0.00 36.95 3.74
2089 2208 7.981789 AGAGTGTAACACATCATATTCGAATGT 59.018 33.333 20.87 11.50 41.43 2.71
2123 2242 3.540314 ACTGCAGTGAGAAGATGGATC 57.460 47.619 20.97 0.00 0.00 3.36
2180 2299 6.183361 ACAGTACAACTCAGAGGAAGGATTTT 60.183 38.462 1.53 0.00 0.00 1.82
2217 2336 8.926092 AGAAAGCTTACAGAAAAAGAGGTAAT 57.074 30.769 0.00 0.00 0.00 1.89
2267 2389 7.233757 AGCCCTTTACTATGAGATACCAAGTAG 59.766 40.741 0.00 0.00 0.00 2.57
2268 2390 7.379750 CCCTTTACTATGAGATACCAAGTAGC 58.620 42.308 0.00 0.00 0.00 3.58
2274 2396 8.046294 ACTATGAGATACCAAGTAGCTATTCG 57.954 38.462 0.00 0.00 34.77 3.34
2280 2402 3.939066 ACCAAGTAGCTATTCGCAAAGT 58.061 40.909 0.00 0.00 42.61 2.66
2376 2499 3.084039 GTTTGTCATCAATCAGGCTGGA 58.916 45.455 15.73 4.39 33.32 3.86
2442 2565 0.813184 TCGTGGACGTGGTAAGATCC 59.187 55.000 0.00 0.00 40.80 3.36
2600 2723 8.627208 ATCTTCAGGTAACATATAAATGCAGG 57.373 34.615 0.00 0.00 36.50 4.85
2603 2726 6.061441 TCAGGTAACATATAAATGCAGGGTG 58.939 40.000 0.00 0.00 36.50 4.61
2604 2727 5.827797 CAGGTAACATATAAATGCAGGGTGT 59.172 40.000 0.00 0.00 36.50 4.16
2605 2728 6.321181 CAGGTAACATATAAATGCAGGGTGTT 59.679 38.462 0.00 0.45 36.50 3.32
2606 2729 6.895204 AGGTAACATATAAATGCAGGGTGTTT 59.105 34.615 0.00 0.00 36.50 2.83
2607 2730 7.398904 AGGTAACATATAAATGCAGGGTGTTTT 59.601 33.333 0.00 0.00 36.50 2.43
2608 2731 7.704899 GGTAACATATAAATGCAGGGTGTTTTC 59.295 37.037 0.00 0.00 36.50 2.29
2609 2732 6.849085 ACATATAAATGCAGGGTGTTTTCA 57.151 33.333 0.00 0.00 36.50 2.69
2610 2733 6.866480 ACATATAAATGCAGGGTGTTTTCAG 58.134 36.000 0.00 0.00 36.50 3.02
2611 2734 2.531522 AAATGCAGGGTGTTTTCAGC 57.468 45.000 0.00 0.00 46.26 4.26
2612 2735 8.932790 ACATATAAATGCAGGGTGTTTTCAGCA 61.933 37.037 0.00 0.00 42.01 4.41
2620 2743 2.938869 GGTGTTTTCAGCAATGAGAGC 58.061 47.619 0.00 0.00 46.24 4.09
2621 2744 2.294233 GGTGTTTTCAGCAATGAGAGCA 59.706 45.455 0.00 0.00 46.24 4.26
2622 2745 3.243501 GGTGTTTTCAGCAATGAGAGCAA 60.244 43.478 0.00 0.00 46.24 3.91
2623 2746 4.553323 GTGTTTTCAGCAATGAGAGCAAT 58.447 39.130 0.00 0.00 0.00 3.56
2624 2747 4.384846 GTGTTTTCAGCAATGAGAGCAATG 59.615 41.667 0.00 0.00 0.00 2.82
2625 2748 4.038282 TGTTTTCAGCAATGAGAGCAATGT 59.962 37.500 0.00 0.00 0.00 2.71
2626 2749 3.842732 TTCAGCAATGAGAGCAATGTG 57.157 42.857 0.00 0.00 0.00 3.21
2627 2750 1.471287 TCAGCAATGAGAGCAATGTGC 59.529 47.619 0.00 0.00 45.46 4.57
2638 2761 2.357327 GCAATGTGCAATGAGAGCAA 57.643 45.000 0.00 0.00 44.64 3.91
2639 2762 1.990563 GCAATGTGCAATGAGAGCAAC 59.009 47.619 0.00 0.00 44.64 4.17
2640 2763 2.608506 GCAATGTGCAATGAGAGCAACA 60.609 45.455 0.00 0.00 44.64 3.33
2654 2778 3.063485 GAGCAACAGTTTCAGAGACTCC 58.937 50.000 0.00 0.00 0.00 3.85
2667 2791 6.044411 TCAGAGACTCCCCCTATTTCTTAT 57.956 41.667 0.00 0.00 0.00 1.73
2668 2792 6.078664 TCAGAGACTCCCCCTATTTCTTATC 58.921 44.000 0.00 0.00 0.00 1.75
2669 2793 6.081356 CAGAGACTCCCCCTATTTCTTATCT 58.919 44.000 0.00 0.00 0.00 1.98
2670 2794 7.075138 TCAGAGACTCCCCCTATTTCTTATCTA 59.925 40.741 0.00 0.00 0.00 1.98
2671 2795 7.396055 CAGAGACTCCCCCTATTTCTTATCTAG 59.604 44.444 0.00 0.00 0.00 2.43
2673 2797 8.303338 AGACTCCCCCTATTTCTTATCTAGTA 57.697 38.462 0.00 0.00 0.00 1.82
2674 2798 8.395605 AGACTCCCCCTATTTCTTATCTAGTAG 58.604 40.741 0.00 0.00 0.00 2.57
2675 2799 8.071235 ACTCCCCCTATTTCTTATCTAGTAGT 57.929 38.462 0.00 0.00 0.00 2.73
2676 2800 9.192129 ACTCCCCCTATTTCTTATCTAGTAGTA 57.808 37.037 0.00 0.00 0.00 1.82
2677 2801 9.689501 CTCCCCCTATTTCTTATCTAGTAGTAG 57.310 40.741 0.00 0.00 0.00 2.57
2678 2802 9.415752 TCCCCCTATTTCTTATCTAGTAGTAGA 57.584 37.037 9.73 9.73 39.70 2.59
2731 2855 1.919600 ATCTGGGCAAGGAGCTGGTC 61.920 60.000 0.00 0.00 44.79 4.02
2827 2951 3.323115 TGCAGCTCATATTCTCCGAAGAT 59.677 43.478 0.00 0.00 0.00 2.40
2916 3045 4.470304 TCATTCATTGGCCAATGGATTCAA 59.530 37.500 43.41 33.52 42.78 2.69
3080 3209 2.029290 ACATTCGCAACGAGAAGGTAGT 60.029 45.455 0.00 0.00 40.24 2.73
3088 3217 5.388164 CGCAACGAGAAGGTAGTAAAAGAAC 60.388 44.000 0.00 0.00 0.00 3.01
3094 3223 6.369065 CGAGAAGGTAGTAAAAGAACAAGCAT 59.631 38.462 0.00 0.00 0.00 3.79
3096 3225 7.224297 AGAAGGTAGTAAAAGAACAAGCATGA 58.776 34.615 0.00 0.00 0.00 3.07
3114 3243 7.333528 AGCATGATTGACCAATTAAACGTAT 57.666 32.000 0.00 0.00 0.00 3.06
3122 3251 6.588204 TGACCAATTAAACGTATAGCCTGAT 58.412 36.000 0.00 0.00 0.00 2.90
3123 3252 6.704493 TGACCAATTAAACGTATAGCCTGATC 59.296 38.462 0.00 0.00 0.00 2.92
3124 3253 6.588204 ACCAATTAAACGTATAGCCTGATCA 58.412 36.000 0.00 0.00 0.00 2.92
3125 3254 7.051623 ACCAATTAAACGTATAGCCTGATCAA 58.948 34.615 0.00 0.00 0.00 2.57
3186 3315 2.753296 GATCGATGAGGAAGCTGAAGG 58.247 52.381 0.54 0.00 0.00 3.46
3436 3565 2.364780 GGAACCTGTACCGGGGGAG 61.365 68.421 6.32 0.00 33.40 4.30
3722 3851 3.627690 CTCAGGGAGCTGGAGGAC 58.372 66.667 0.00 0.00 0.00 3.85
3848 3977 2.625790 CGGATCCTTCTAGCTAGCAAGT 59.374 50.000 18.83 0.00 0.00 3.16
3880 4009 0.103572 CTAAGGCGCCGGTTAGCTTA 59.896 55.000 23.20 11.29 0.00 3.09
3884 4013 0.028902 GGCGCCGGTTAGCTTAATTG 59.971 55.000 12.58 0.00 0.00 2.32
3885 4014 1.011333 GCGCCGGTTAGCTTAATTGA 58.989 50.000 1.90 0.00 0.00 2.57
3886 4015 1.602377 GCGCCGGTTAGCTTAATTGAT 59.398 47.619 1.90 0.00 0.00 2.57
3887 4016 2.032924 GCGCCGGTTAGCTTAATTGATT 59.967 45.455 1.90 0.00 0.00 2.57
3888 4017 3.249080 GCGCCGGTTAGCTTAATTGATTA 59.751 43.478 1.90 0.00 0.00 1.75
3889 4018 4.769215 CGCCGGTTAGCTTAATTGATTAC 58.231 43.478 1.90 0.00 0.00 1.89
3890 4019 4.271533 CGCCGGTTAGCTTAATTGATTACA 59.728 41.667 1.90 0.00 0.00 2.41
3891 4020 5.220700 CGCCGGTTAGCTTAATTGATTACAA 60.221 40.000 1.90 0.00 40.42 2.41
3892 4021 6.199393 GCCGGTTAGCTTAATTGATTACAAG 58.801 40.000 1.90 0.00 39.46 3.16
3893 4022 6.183360 GCCGGTTAGCTTAATTGATTACAAGT 60.183 38.462 1.90 0.00 39.46 3.16
3894 4023 7.627726 GCCGGTTAGCTTAATTGATTACAAGTT 60.628 37.037 1.90 0.00 39.46 2.66
3895 4024 8.241367 CCGGTTAGCTTAATTGATTACAAGTTT 58.759 33.333 0.00 0.00 39.46 2.66
3927 4082 4.341366 TCAGACTCAATCAAGCTGTGAA 57.659 40.909 0.00 0.00 40.50 3.18
4002 4161 5.669477 TGCATTTTCCTTACTTTTGCAAGT 58.331 33.333 0.00 0.00 45.73 3.16
4003 4162 5.752955 TGCATTTTCCTTACTTTTGCAAGTC 59.247 36.000 0.00 0.00 42.66 3.01
4005 4164 4.561735 TTTCCTTACTTTTGCAAGTCGG 57.438 40.909 0.00 0.08 42.66 4.79
4006 4165 2.500229 TCCTTACTTTTGCAAGTCGGG 58.500 47.619 0.00 1.66 42.66 5.14
4007 4166 2.158726 TCCTTACTTTTGCAAGTCGGGT 60.159 45.455 0.00 0.00 42.66 5.28
4008 4167 2.031157 CCTTACTTTTGCAAGTCGGGTG 60.031 50.000 0.00 0.00 42.66 4.61
4016 5204 3.857038 AAGTCGGGTGTGCACGGT 61.857 61.111 13.13 0.00 42.74 4.83
4118 6489 1.597742 TCAAAACAGTGGCTCTCAGC 58.402 50.000 0.00 0.00 41.46 4.26
4216 6599 0.250295 AACCTGGGACGTCATGTGTG 60.250 55.000 18.91 2.79 0.00 3.82
4217 6600 1.371183 CCTGGGACGTCATGTGTGT 59.629 57.895 18.91 0.00 0.00 3.72
4232 6615 4.270245 TGTGTGTCATGTAAGAGCATCA 57.730 40.909 0.00 0.00 37.82 3.07
4234 6617 4.872124 TGTGTGTCATGTAAGAGCATCATC 59.128 41.667 0.00 0.00 37.82 2.92
4241 6624 4.684484 TGTAAGAGCATCATCAGCAGAT 57.316 40.909 0.00 0.00 37.82 2.90
4250 6633 4.023365 GCATCATCAGCAGATCCCTTAAAC 60.023 45.833 0.00 0.00 30.20 2.01
4252 6635 2.691409 TCAGCAGATCCCTTAAACCG 57.309 50.000 0.00 0.00 0.00 4.44
4253 6636 1.906574 TCAGCAGATCCCTTAAACCGT 59.093 47.619 0.00 0.00 0.00 4.83
4256 6639 1.339727 GCAGATCCCTTAAACCGTGGT 60.340 52.381 0.00 0.00 0.00 4.16
4258 6641 3.793559 CAGATCCCTTAAACCGTGGTAG 58.206 50.000 0.00 0.00 0.00 3.18
4259 6642 3.449737 CAGATCCCTTAAACCGTGGTAGA 59.550 47.826 0.00 0.00 0.00 2.59
4260 6643 4.101119 CAGATCCCTTAAACCGTGGTAGAT 59.899 45.833 0.00 0.00 0.00 1.98
4261 6644 4.344390 AGATCCCTTAAACCGTGGTAGATC 59.656 45.833 0.00 0.00 0.00 2.75
4262 6645 3.716431 TCCCTTAAACCGTGGTAGATCT 58.284 45.455 0.00 0.00 0.00 2.75
4263 6646 3.703052 TCCCTTAAACCGTGGTAGATCTC 59.297 47.826 0.00 0.00 0.00 2.75
4264 6647 3.705072 CCCTTAAACCGTGGTAGATCTCT 59.295 47.826 0.00 0.00 0.00 3.10
4265 6648 4.161754 CCCTTAAACCGTGGTAGATCTCTT 59.838 45.833 0.00 0.00 0.00 2.85
4266 6649 5.361857 CCCTTAAACCGTGGTAGATCTCTTA 59.638 44.000 0.00 0.00 0.00 2.10
4267 6650 6.127253 CCCTTAAACCGTGGTAGATCTCTTAA 60.127 42.308 0.00 0.00 0.00 1.85
4268 6651 7.325694 CCTTAAACCGTGGTAGATCTCTTAAA 58.674 38.462 0.00 0.00 0.00 1.52
4269 6652 7.277319 CCTTAAACCGTGGTAGATCTCTTAAAC 59.723 40.741 0.00 0.00 0.00 2.01
4270 6653 4.732672 ACCGTGGTAGATCTCTTAAACC 57.267 45.455 0.00 0.83 0.00 3.27
4271 6654 4.091549 ACCGTGGTAGATCTCTTAAACCA 58.908 43.478 9.79 9.79 37.88 3.67
4274 6657 4.730949 TGGTAGATCTCTTAAACCACGG 57.269 45.455 9.79 0.00 35.34 4.94
4275 6658 4.091549 TGGTAGATCTCTTAAACCACGGT 58.908 43.478 9.79 0.00 35.34 4.83
4276 6659 4.529377 TGGTAGATCTCTTAAACCACGGTT 59.471 41.667 9.79 0.00 40.45 4.44
4278 6661 5.350640 GGTAGATCTCTTAAACCACGGTTTG 59.649 44.000 21.76 8.29 46.34 2.93
4279 6662 4.969484 AGATCTCTTAAACCACGGTTTGT 58.031 39.130 21.76 1.67 46.34 2.83
4280 6663 5.374071 AGATCTCTTAAACCACGGTTTGTT 58.626 37.500 21.76 0.96 46.34 2.83
4281 6664 5.826208 AGATCTCTTAAACCACGGTTTGTTT 59.174 36.000 21.76 9.63 46.34 2.83
4282 6665 5.900865 TCTCTTAAACCACGGTTTGTTTT 57.099 34.783 21.76 0.24 46.34 2.43
4284 6667 7.018635 TCTCTTAAACCACGGTTTGTTTTAG 57.981 36.000 21.76 12.44 46.34 1.85
4288 6685 5.648178 AAACCACGGTTTGTTTTAGAGTT 57.352 34.783 13.34 0.00 45.34 3.01
4294 6691 6.404513 CCACGGTTTGTTTTAGAGTTGGTTTA 60.405 38.462 0.00 0.00 0.00 2.01
4297 6694 7.094248 ACGGTTTGTTTTAGAGTTGGTTTAAGT 60.094 33.333 0.00 0.00 0.00 2.24
4305 6702 0.662077 GTTGGTTTAAGTTGCGGCCG 60.662 55.000 24.05 24.05 0.00 6.13
4308 6705 0.524414 GGTTTAAGTTGCGGCCGAAT 59.476 50.000 33.48 6.01 0.00 3.34
4310 6707 2.162008 GGTTTAAGTTGCGGCCGAATAA 59.838 45.455 33.48 17.70 0.00 1.40
4315 6712 1.001887 TTGCGGCCGAATAAACCCT 60.002 52.632 33.48 0.00 0.00 4.34
4317 6714 0.609681 TGCGGCCGAATAAACCCTTT 60.610 50.000 33.48 0.00 0.00 3.11
4321 6718 3.367190 GCGGCCGAATAAACCCTTTAAAA 60.367 43.478 33.48 0.00 0.00 1.52
4397 6800 0.317436 GTCCACGATCAGCTAGCTCG 60.317 60.000 16.15 18.35 41.39 5.03
4400 6803 0.248825 CACGATCAGCTAGCTCGCTT 60.249 55.000 16.15 0.00 39.36 4.68
4404 6807 2.664424 CGATCAGCTAGCTCGCTTCTAC 60.664 54.545 16.15 2.20 38.41 2.59
4413 6816 2.000447 GCTCGCTTCTACAAAACCGAT 59.000 47.619 0.00 0.00 0.00 4.18
4421 6824 5.407387 GCTTCTACAAAACCGATGAACAGTA 59.593 40.000 0.00 0.00 0.00 2.74
4422 6825 6.092259 GCTTCTACAAAACCGATGAACAGTAT 59.908 38.462 0.00 0.00 0.00 2.12
4425 6828 7.604549 TCTACAAAACCGATGAACAGTATACA 58.395 34.615 5.50 0.00 0.00 2.29
4439 6842 4.334481 ACAGTATACAAAGCGGCCAAATAC 59.666 41.667 2.24 0.00 0.00 1.89
4449 6852 2.403378 GCCAAATACGAAGCCGCCA 61.403 57.895 0.00 0.00 39.95 5.69
4471 6874 1.732732 CGTCCAACTAGCTCGAAGTGG 60.733 57.143 0.00 0.00 0.00 4.00
4480 6883 0.373716 GCTCGAAGTGGCCAAATACG 59.626 55.000 7.24 11.81 0.00 3.06
4482 6885 2.343101 CTCGAAGTGGCCAAATACGAA 58.657 47.619 7.24 1.56 0.00 3.85
4484 6887 1.202031 CGAAGTGGCCAAATACGAAGC 60.202 52.381 7.24 0.00 0.00 3.86
4485 6888 1.132453 GAAGTGGCCAAATACGAAGCC 59.868 52.381 7.24 0.00 45.96 4.35
4488 6891 1.807226 GGCCAAATACGAAGCCACC 59.193 57.895 0.00 0.00 45.07 4.61
4489 6892 1.427819 GCCAAATACGAAGCCACCG 59.572 57.895 0.00 0.00 0.00 4.94
4490 6893 1.988834 GCCAAATACGAAGCCACCGG 61.989 60.000 0.00 0.00 0.00 5.28
4501 6904 3.196648 CCACCGGCAGCCAAATAC 58.803 61.111 13.30 0.00 0.00 1.89
4502 6905 2.760159 CCACCGGCAGCCAAATACG 61.760 63.158 13.30 0.00 0.00 3.06
4503 6906 1.743623 CACCGGCAGCCAAATACGA 60.744 57.895 13.30 0.00 0.00 3.43
4504 6907 1.003112 ACCGGCAGCCAAATACGAA 60.003 52.632 13.30 0.00 0.00 3.85
4505 6908 1.024579 ACCGGCAGCCAAATACGAAG 61.025 55.000 13.30 0.00 0.00 3.79
4506 6909 1.062525 CGGCAGCCAAATACGAAGC 59.937 57.895 13.30 0.00 0.00 3.86
4507 6910 1.433471 GGCAGCCAAATACGAAGCC 59.567 57.895 6.55 0.00 0.00 4.35
4508 6911 1.062525 GCAGCCAAATACGAAGCCG 59.937 57.895 0.00 0.00 42.50 5.52
4509 6912 1.062525 CAGCCAAATACGAAGCCGC 59.937 57.895 0.00 0.00 39.95 6.53
4510 6913 2.112815 AGCCAAATACGAAGCCGCC 61.113 57.895 0.00 0.00 39.95 6.13
4511 6914 2.707039 CCAAATACGAAGCCGCCG 59.293 61.111 0.00 0.00 39.95 6.46
4512 6915 1.812093 CCAAATACGAAGCCGCCGA 60.812 57.895 0.00 0.00 39.95 5.54
4513 6916 1.347221 CAAATACGAAGCCGCCGAC 59.653 57.895 0.00 0.00 39.95 4.79
4514 6917 2.162754 AAATACGAAGCCGCCGACG 61.163 57.895 0.00 0.00 39.95 5.12
4515 6918 2.824071 AAATACGAAGCCGCCGACGT 62.824 55.000 10.81 10.81 41.66 4.34
4516 6919 3.746409 ATACGAAGCCGCCGACGTC 62.746 63.158 5.18 5.18 39.59 4.34
4522 6925 4.424566 GCCGCCGACGTCCAACTA 62.425 66.667 10.58 0.00 37.70 2.24
4523 6926 2.202570 CCGCCGACGTCCAACTAG 60.203 66.667 10.58 0.00 37.70 2.57
4524 6927 2.879462 CGCCGACGTCCAACTAGC 60.879 66.667 10.58 2.84 33.53 3.42
4525 6928 2.572284 GCCGACGTCCAACTAGCT 59.428 61.111 10.58 0.00 0.00 3.32
4526 6929 1.516603 GCCGACGTCCAACTAGCTC 60.517 63.158 10.58 0.00 0.00 4.09
4527 6930 1.226323 CCGACGTCCAACTAGCTCG 60.226 63.158 10.58 0.00 0.00 5.03
4528 6931 1.642037 CCGACGTCCAACTAGCTCGA 61.642 60.000 10.58 0.00 0.00 4.04
4529 6932 0.167470 CGACGTCCAACTAGCTCGAA 59.833 55.000 10.58 0.00 0.00 3.71
4530 6933 1.790838 CGACGTCCAACTAGCTCGAAG 60.791 57.143 10.58 0.00 0.00 3.79
4531 6934 1.199558 GACGTCCAACTAGCTCGAAGT 59.800 52.381 3.51 0.00 0.00 3.01
4532 6935 1.068472 ACGTCCAACTAGCTCGAAGTG 60.068 52.381 0.00 0.00 0.00 3.16
4533 6936 1.732732 CGTCCAACTAGCTCGAAGTGG 60.733 57.143 0.00 0.00 0.00 4.00
4534 6937 0.246635 TCCAACTAGCTCGAAGTGGC 59.753 55.000 0.00 0.00 0.00 5.01
4535 6938 0.741221 CCAACTAGCTCGAAGTGGCC 60.741 60.000 0.00 0.00 0.00 5.36
4536 6939 0.037326 CAACTAGCTCGAAGTGGCCA 60.037 55.000 0.00 0.00 0.00 5.36
4537 6940 0.685097 AACTAGCTCGAAGTGGCCAA 59.315 50.000 7.24 0.00 0.00 4.52
4538 6941 0.685097 ACTAGCTCGAAGTGGCCAAA 59.315 50.000 7.24 0.00 0.00 3.28
4539 6942 1.279271 ACTAGCTCGAAGTGGCCAAAT 59.721 47.619 7.24 0.00 0.00 2.32
4540 6943 2.500098 ACTAGCTCGAAGTGGCCAAATA 59.500 45.455 7.24 0.00 0.00 1.40
4541 6944 1.739067 AGCTCGAAGTGGCCAAATAC 58.261 50.000 7.24 0.00 0.00 1.89
4542 6945 1.003118 AGCTCGAAGTGGCCAAATACA 59.997 47.619 7.24 0.00 0.00 2.29
4543 6946 1.810151 GCTCGAAGTGGCCAAATACAA 59.190 47.619 7.24 0.00 0.00 2.41
4544 6947 2.227865 GCTCGAAGTGGCCAAATACAAA 59.772 45.455 7.24 0.00 0.00 2.83
4545 6948 3.670627 GCTCGAAGTGGCCAAATACAAAG 60.671 47.826 7.24 0.26 0.00 2.77
4546 6949 2.227865 TCGAAGTGGCCAAATACAAAGC 59.772 45.455 7.24 0.00 0.00 3.51
4547 6950 2.671070 CGAAGTGGCCAAATACAAAGCC 60.671 50.000 7.24 0.00 45.96 4.35
4549 6952 4.494811 GGCCAAATACAAAGCCGC 57.505 55.556 0.00 0.00 35.30 6.53
4550 6953 1.153647 GGCCAAATACAAAGCCGCC 60.154 57.895 0.00 0.00 35.30 6.13
4551 6954 1.516169 GCCAAATACAAAGCCGCCG 60.516 57.895 0.00 0.00 0.00 6.46
4552 6955 1.138671 CCAAATACAAAGCCGCCGG 59.861 57.895 0.00 0.00 0.00 6.13
4565 6968 3.887868 GCCGGCGGCCAAATACAG 61.888 66.667 39.67 3.56 44.06 2.74
4566 6969 3.887868 CCGGCGGCCAAATACAGC 61.888 66.667 20.71 0.00 0.00 4.40
4567 6970 4.236416 CGGCGGCCAAATACAGCG 62.236 66.667 20.71 0.00 0.00 5.18
4568 6971 4.552745 GGCGGCCAAATACAGCGC 62.553 66.667 15.62 0.00 0.00 5.92
4569 6972 3.809775 GCGGCCAAATACAGCGCA 61.810 61.111 11.47 0.00 0.00 6.09
4570 6973 2.100216 CGGCCAAATACAGCGCAC 59.900 61.111 11.47 0.00 0.00 5.34
4571 6974 2.100216 GGCCAAATACAGCGCACG 59.900 61.111 11.47 1.85 0.00 5.34
4572 6975 2.395360 GGCCAAATACAGCGCACGA 61.395 57.895 11.47 0.00 0.00 4.35
4573 6976 1.499949 GCCAAATACAGCGCACGAA 59.500 52.632 11.47 0.00 0.00 3.85
4574 6977 0.109964 GCCAAATACAGCGCACGAAA 60.110 50.000 11.47 0.00 0.00 3.46
4592 6995 3.307242 CGAAACTCGAATCAATCCAGGAC 59.693 47.826 0.00 0.00 43.74 3.85
4656 7091 2.587473 GCAAGCTAGCTCCTCCGC 60.587 66.667 19.65 12.01 0.00 5.54
4658 7093 2.364317 AAGCTAGCTCCTCCGCCA 60.364 61.111 19.65 0.00 0.00 5.69
4665 7100 2.055042 GCTCCTCCGCCAGAAGAGA 61.055 63.158 2.00 0.00 35.35 3.10
4673 7109 3.764466 CCAGAAGAGAGCGGGCGT 61.764 66.667 0.00 0.00 0.00 5.68
4750 7186 1.646189 GGAGCGAGTCATGAAGGTTC 58.354 55.000 0.00 0.00 0.00 3.62
4756 7192 3.193263 CGAGTCATGAAGGTTCTGATGG 58.807 50.000 0.00 0.00 0.00 3.51
4762 7198 4.019411 TCATGAAGGTTCTGATGGCAGTTA 60.019 41.667 0.00 0.00 42.84 2.24
4768 7204 5.574188 AGGTTCTGATGGCAGTTATCTTTT 58.426 37.500 0.00 0.00 42.84 2.27
4773 7209 5.001237 TGATGGCAGTTATCTTTTGCATG 57.999 39.130 0.00 0.00 39.54 4.06
4778 7214 5.242615 TGGCAGTTATCTTTTGCATGTACAA 59.757 36.000 0.00 0.00 39.54 2.41
4779 7215 6.155827 GGCAGTTATCTTTTGCATGTACAAA 58.844 36.000 0.00 0.00 39.54 2.83
4789 7225 5.781210 TTGCATGTACAAACATCTTTGGA 57.219 34.783 0.00 0.00 44.70 3.53
4825 7261 7.931578 ATCCTTATTTTTACATGTTCGGTGA 57.068 32.000 2.30 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 114 3.600388 AGATTCCGGTGAAACACATCTC 58.400 45.455 0.00 0.00 39.98 2.75
125 126 3.263425 ACCAAATGTAGTGAGATTCCGGT 59.737 43.478 0.00 0.00 0.00 5.28
127 128 4.759782 AGACCAAATGTAGTGAGATTCCG 58.240 43.478 0.00 0.00 0.00 4.30
143 144 2.169769 AGAGTCAACCGTGAAAGACCAA 59.830 45.455 0.00 0.00 34.87 3.67
149 151 5.337554 CGATACATAGAGTCAACCGTGAAA 58.662 41.667 0.00 0.00 34.87 2.69
213 217 6.367149 GTGGAATCTTTGGCTTCTCAATTTTC 59.633 38.462 0.00 0.00 0.00 2.29
215 219 5.541484 AGTGGAATCTTTGGCTTCTCAATTT 59.459 36.000 0.00 0.00 0.00 1.82
216 220 5.082425 AGTGGAATCTTTGGCTTCTCAATT 58.918 37.500 0.00 0.00 0.00 2.32
217 221 4.670765 AGTGGAATCTTTGGCTTCTCAAT 58.329 39.130 0.00 0.00 0.00 2.57
218 222 4.104383 AGTGGAATCTTTGGCTTCTCAA 57.896 40.909 0.00 0.00 0.00 3.02
219 223 3.795688 AGTGGAATCTTTGGCTTCTCA 57.204 42.857 0.00 0.00 0.00 3.27
220 224 6.207614 ACTTTTAGTGGAATCTTTGGCTTCTC 59.792 38.462 0.00 0.00 0.00 2.87
223 227 6.323739 TCAACTTTTAGTGGAATCTTTGGCTT 59.676 34.615 0.00 0.00 0.00 4.35
224 228 5.833131 TCAACTTTTAGTGGAATCTTTGGCT 59.167 36.000 0.00 0.00 0.00 4.75
225 229 6.084326 TCAACTTTTAGTGGAATCTTTGGC 57.916 37.500 0.00 0.00 0.00 4.52
226 230 9.196552 GATTTCAACTTTTAGTGGAATCTTTGG 57.803 33.333 0.00 0.00 37.93 3.28
268 272 4.967084 TGCTTAGTACAACTTCCCTTCA 57.033 40.909 0.00 0.00 0.00 3.02
272 276 4.001652 GTCCTTGCTTAGTACAACTTCCC 58.998 47.826 0.00 0.00 0.00 3.97
349 399 7.446625 GCTACTTGGATGATTGACCATTAGAAT 59.553 37.037 0.00 0.00 36.02 2.40
451 513 8.359892 AGGTATAGGCTCCCATCCTTATTAATA 58.640 37.037 0.00 0.00 35.21 0.98
452 514 7.127955 CAGGTATAGGCTCCCATCCTTATTAAT 59.872 40.741 0.00 0.00 35.21 1.40
453 515 6.443849 CAGGTATAGGCTCCCATCCTTATTAA 59.556 42.308 0.00 0.00 35.21 1.40
462 524 4.763355 TCATAACAGGTATAGGCTCCCAT 58.237 43.478 0.00 0.00 0.00 4.00
470 532 8.668510 AGTCAAAGCAATCATAACAGGTATAG 57.331 34.615 0.00 0.00 0.00 1.31
474 536 6.886459 ACATAGTCAAAGCAATCATAACAGGT 59.114 34.615 0.00 0.00 0.00 4.00
486 549 7.121168 CCAAATCCTTTCTACATAGTCAAAGCA 59.879 37.037 0.00 0.00 0.00 3.91
554 619 1.162698 TGAAGCGAGTACGTACAGCT 58.837 50.000 30.27 30.27 41.69 4.24
599 664 5.333798 CCGTCATAAACAACGATTGACACTT 60.334 40.000 0.00 0.00 37.20 3.16
604 669 4.059511 ACACCGTCATAAACAACGATTGA 58.940 39.130 0.00 0.00 0.00 2.57
618 683 0.872451 CAACTGCGTACACACCGTCA 60.872 55.000 0.00 0.00 0.00 4.35
620 685 1.593209 CCAACTGCGTACACACCGT 60.593 57.895 0.00 0.00 0.00 4.83
633 698 3.117745 TCCATGATCACCATCTCCAACT 58.882 45.455 0.00 0.00 31.94 3.16
641 706 9.645128 TTAGATAAAAACATCCATGATCACCAT 57.355 29.630 0.00 0.00 35.44 3.55
642 707 8.902806 GTTAGATAAAAACATCCATGATCACCA 58.097 33.333 0.00 0.00 0.00 4.17
655 720 6.405731 GCTGCCATCCATGTTAGATAAAAACA 60.406 38.462 0.00 0.00 40.85 2.83
663 728 4.436113 TTATGCTGCCATCCATGTTAGA 57.564 40.909 0.00 0.00 32.85 2.10
690 755 2.344093 AGGTGGTGGTGGACTAATCT 57.656 50.000 0.00 0.00 0.00 2.40
712 777 8.250143 TCATATGACCACACTATGTCTATGTT 57.750 34.615 0.00 0.00 31.68 2.71
764 832 7.576666 GCACATCCAATACCAACACTTTGATAA 60.577 37.037 0.00 0.00 34.24 1.75
770 852 2.825532 GGCACATCCAATACCAACACTT 59.174 45.455 0.00 0.00 34.01 3.16
778 860 5.133221 AGTTAGAATGGGCACATCCAATAC 58.867 41.667 0.00 0.00 40.62 1.89
779 861 5.387113 AGTTAGAATGGGCACATCCAATA 57.613 39.130 0.00 0.00 40.62 1.90
790 872 3.072184 AGCCTCTGCATAGTTAGAATGGG 59.928 47.826 0.00 0.00 41.13 4.00
791 873 4.063689 CAGCCTCTGCATAGTTAGAATGG 58.936 47.826 0.00 0.00 41.13 3.16
931 1013 6.125719 GCTCCCAGATATTTCTTTCCTCTTT 58.874 40.000 0.00 0.00 0.00 2.52
950 1032 6.122964 ACTCCAAAAGATAGTAATTGCTCCC 58.877 40.000 0.00 0.00 0.00 4.30
987 1069 3.311106 CAAGCACATGTGGTCACAAATC 58.689 45.455 29.22 8.48 45.41 2.17
1052 1134 3.054728 TGGGGCTTCGATGTTCTTGATAA 60.055 43.478 0.00 0.00 0.00 1.75
1080 1169 2.372264 TGATTTGGATGCTTGGCTCTC 58.628 47.619 0.00 0.00 0.00 3.20
1183 1272 0.243095 AGGTGGAAGCGTAAGTCGAC 59.757 55.000 7.70 7.70 42.86 4.20
1200 1289 3.764160 GAAGGCGGCTGGATGGAGG 62.764 68.421 14.21 0.00 0.00 4.30
1795 1887 1.143813 ATAGGGACCAAGCATGAGGG 58.856 55.000 0.00 0.00 0.00 4.30
1928 2020 6.018751 GTGCCATGTCATTGTACATACTACAG 60.019 42.308 0.00 0.00 38.01 2.74
1945 2041 3.650281 TGAGGATACATTGTGCCATGT 57.350 42.857 11.57 0.00 41.41 3.21
1969 2065 7.713764 AGACCTAATGCAAAATCAAACAAAC 57.286 32.000 0.00 0.00 0.00 2.93
2013 2109 7.069331 TGGACAACATAAATTGAGTTCACCTTT 59.931 33.333 0.00 0.00 33.57 3.11
2019 2115 7.271223 CGACAATGGACAACATAAATTGAGTTC 59.729 37.037 0.00 0.00 39.40 3.01
2043 2139 7.445707 ACACTCTGAATATATGAAGCTCTACGA 59.554 37.037 0.00 0.00 0.00 3.43
2044 2140 7.589395 ACACTCTGAATATATGAAGCTCTACG 58.411 38.462 0.00 0.00 0.00 3.51
2089 2208 1.959226 GCAGTTCGCCCTGTTTCGA 60.959 57.895 3.60 0.00 34.84 3.71
2180 2299 5.182487 TGTAAGCTTTCTATCCAATTCGCA 58.818 37.500 3.20 0.00 0.00 5.10
2217 2336 7.709613 GCTAGAAAAACTACTATGAATTCGGGA 59.290 37.037 0.04 0.00 0.00 5.14
2268 2390 8.420374 TGGTATCTCTTTTACTTTGCGAATAG 57.580 34.615 0.00 0.00 0.00 1.73
2280 2402 8.946085 CAGTGCAATTACTTGGTATCTCTTTTA 58.054 33.333 0.00 0.00 32.72 1.52
2376 2499 2.364972 ACAGCCTGTTTGGTAGCTTT 57.635 45.000 0.00 0.00 38.35 3.51
2600 2723 2.294233 TGCTCTCATTGCTGAAAACACC 59.706 45.455 0.00 0.00 0.00 4.16
2603 2726 4.384846 CACATTGCTCTCATTGCTGAAAAC 59.615 41.667 0.00 0.00 0.00 2.43
2604 2727 4.552355 CACATTGCTCTCATTGCTGAAAA 58.448 39.130 0.00 0.00 0.00 2.29
2605 2728 3.613193 GCACATTGCTCTCATTGCTGAAA 60.613 43.478 0.00 0.00 40.96 2.69
2606 2729 2.094906 GCACATTGCTCTCATTGCTGAA 60.095 45.455 0.00 0.00 40.96 3.02
2607 2730 1.471287 GCACATTGCTCTCATTGCTGA 59.529 47.619 0.00 0.00 40.96 4.26
2608 2731 1.201414 TGCACATTGCTCTCATTGCTG 59.799 47.619 0.00 0.00 45.31 4.41
2609 2732 1.541379 TGCACATTGCTCTCATTGCT 58.459 45.000 0.00 0.00 45.31 3.91
2610 2733 2.357327 TTGCACATTGCTCTCATTGC 57.643 45.000 0.00 0.00 45.31 3.56
2611 2734 4.104696 TCATTGCACATTGCTCTCATTG 57.895 40.909 0.00 0.00 45.31 2.82
2612 2735 4.014406 TCTCATTGCACATTGCTCTCATT 58.986 39.130 0.00 0.00 45.31 2.57
2613 2736 3.617284 TCTCATTGCACATTGCTCTCAT 58.383 40.909 0.00 0.00 45.31 2.90
2614 2737 3.007635 CTCTCATTGCACATTGCTCTCA 58.992 45.455 0.00 0.00 45.31 3.27
2615 2738 2.223294 GCTCTCATTGCACATTGCTCTC 60.223 50.000 0.00 0.00 45.31 3.20
2616 2739 1.743958 GCTCTCATTGCACATTGCTCT 59.256 47.619 0.00 0.00 45.31 4.09
2617 2740 1.471287 TGCTCTCATTGCACATTGCTC 59.529 47.619 0.00 0.00 45.31 4.26
2618 2741 1.541379 TGCTCTCATTGCACATTGCT 58.459 45.000 0.00 0.00 45.31 3.91
2619 2742 1.990563 GTTGCTCTCATTGCACATTGC 59.009 47.619 0.00 0.00 45.29 3.56
2620 2743 3.242518 CTGTTGCTCTCATTGCACATTG 58.757 45.455 0.00 0.00 40.40 2.82
2621 2744 2.889045 ACTGTTGCTCTCATTGCACATT 59.111 40.909 0.00 0.00 40.40 2.71
2622 2745 2.511659 ACTGTTGCTCTCATTGCACAT 58.488 42.857 0.00 0.00 40.40 3.21
2623 2746 1.971481 ACTGTTGCTCTCATTGCACA 58.029 45.000 0.00 0.00 40.40 4.57
2624 2747 3.243168 TGAAACTGTTGCTCTCATTGCAC 60.243 43.478 0.00 0.00 40.40 4.57
2625 2748 2.950975 TGAAACTGTTGCTCTCATTGCA 59.049 40.909 0.00 0.00 38.80 4.08
2626 2749 3.251729 TCTGAAACTGTTGCTCTCATTGC 59.748 43.478 0.00 0.00 0.00 3.56
2627 2750 4.753610 TCTCTGAAACTGTTGCTCTCATTG 59.246 41.667 0.00 0.00 0.00 2.82
2628 2751 4.754114 GTCTCTGAAACTGTTGCTCTCATT 59.246 41.667 0.00 0.00 0.00 2.57
2629 2752 4.040217 AGTCTCTGAAACTGTTGCTCTCAT 59.960 41.667 0.00 0.00 0.00 2.90
2630 2753 3.386078 AGTCTCTGAAACTGTTGCTCTCA 59.614 43.478 0.00 0.00 0.00 3.27
2631 2754 3.987220 GAGTCTCTGAAACTGTTGCTCTC 59.013 47.826 0.00 0.00 0.00 3.20
2632 2755 3.244044 GGAGTCTCTGAAACTGTTGCTCT 60.244 47.826 0.00 0.00 0.00 4.09
2633 2756 3.063485 GGAGTCTCTGAAACTGTTGCTC 58.937 50.000 0.00 0.00 0.00 4.26
2634 2757 2.224402 GGGAGTCTCTGAAACTGTTGCT 60.224 50.000 0.00 0.00 0.00 3.91
2635 2758 2.147150 GGGAGTCTCTGAAACTGTTGC 58.853 52.381 0.00 0.00 0.00 4.17
2636 2759 2.551071 GGGGGAGTCTCTGAAACTGTTG 60.551 54.545 0.00 0.00 0.00 3.33
2637 2760 1.700186 GGGGGAGTCTCTGAAACTGTT 59.300 52.381 0.00 0.00 0.00 3.16
2638 2761 1.132689 AGGGGGAGTCTCTGAAACTGT 60.133 52.381 0.00 0.00 0.00 3.55
2639 2762 1.650528 AGGGGGAGTCTCTGAAACTG 58.349 55.000 0.00 0.00 0.00 3.16
2640 2763 3.786213 ATAGGGGGAGTCTCTGAAACT 57.214 47.619 0.00 0.00 0.00 2.66
2670 2794 9.436957 CACATTCCACTGTTAAATTCTACTACT 57.563 33.333 0.00 0.00 0.00 2.57
2671 2795 9.431887 TCACATTCCACTGTTAAATTCTACTAC 57.568 33.333 0.00 0.00 0.00 2.73
2673 2797 7.936847 TGTCACATTCCACTGTTAAATTCTACT 59.063 33.333 0.00 0.00 0.00 2.57
2674 2798 8.094798 TGTCACATTCCACTGTTAAATTCTAC 57.905 34.615 0.00 0.00 0.00 2.59
2675 2799 7.390440 CCTGTCACATTCCACTGTTAAATTCTA 59.610 37.037 0.00 0.00 0.00 2.10
2676 2800 6.207417 CCTGTCACATTCCACTGTTAAATTCT 59.793 38.462 0.00 0.00 0.00 2.40
2677 2801 6.206634 TCCTGTCACATTCCACTGTTAAATTC 59.793 38.462 0.00 0.00 0.00 2.17
2678 2802 6.068010 TCCTGTCACATTCCACTGTTAAATT 58.932 36.000 0.00 0.00 0.00 1.82
2679 2803 5.630121 TCCTGTCACATTCCACTGTTAAAT 58.370 37.500 0.00 0.00 0.00 1.40
2680 2804 5.042463 TCCTGTCACATTCCACTGTTAAA 57.958 39.130 0.00 0.00 0.00 1.52
2681 2805 4.698201 TCCTGTCACATTCCACTGTTAA 57.302 40.909 0.00 0.00 0.00 2.01
2682 2806 4.908601 ATCCTGTCACATTCCACTGTTA 57.091 40.909 0.00 0.00 0.00 2.41
2683 2807 3.795688 ATCCTGTCACATTCCACTGTT 57.204 42.857 0.00 0.00 0.00 3.16
2688 2812 2.374839 TGGTCAATCCTGTCACATTCCA 59.625 45.455 0.00 0.00 37.07 3.53
2849 2973 4.554363 CCGGAGTAGCGCAGACCG 62.554 72.222 21.65 21.65 42.67 4.79
2916 3045 4.475016 ACAAGGAAGCCATTATCTACCTGT 59.525 41.667 0.00 0.00 0.00 4.00
3080 3209 6.647334 TGGTCAATCATGCTTGTTCTTTTA 57.353 33.333 9.00 0.00 0.00 1.52
3088 3217 5.863397 ACGTTTAATTGGTCAATCATGCTTG 59.137 36.000 2.80 2.80 0.00 4.01
3094 3223 7.011950 CAGGCTATACGTTTAATTGGTCAATCA 59.988 37.037 0.00 0.00 0.00 2.57
3096 3225 7.051623 TCAGGCTATACGTTTAATTGGTCAAT 58.948 34.615 0.00 0.00 0.00 2.57
3135 3264 1.334869 CACCTGAAGAAGCACAACACC 59.665 52.381 0.00 0.00 0.00 4.16
3136 3265 2.288666 TCACCTGAAGAAGCACAACAC 58.711 47.619 0.00 0.00 0.00 3.32
3141 3270 2.945668 ACACTTTCACCTGAAGAAGCAC 59.054 45.455 0.00 0.00 35.21 4.40
3186 3315 2.030562 CACCACCACGTCCTCCAC 59.969 66.667 0.00 0.00 0.00 4.02
3335 3464 2.933287 ATCAGGAACGGCACCCCA 60.933 61.111 0.00 0.00 0.00 4.96
3383 3512 3.746949 CTGCACCCTGATCTCCGCC 62.747 68.421 0.00 0.00 0.00 6.13
3555 3684 2.303311 AGTAGAAGAGGTTGAGGTTGCC 59.697 50.000 0.00 0.00 0.00 4.52
3897 4026 5.428496 TTGATTGAGTCTGAAACTGCAAG 57.572 39.130 0.00 0.00 38.74 4.01
3898 4027 4.261322 GCTTGATTGAGTCTGAAACTGCAA 60.261 41.667 0.00 0.00 38.74 4.08
3899 4028 3.251729 GCTTGATTGAGTCTGAAACTGCA 59.748 43.478 0.00 0.00 38.74 4.41
3900 4029 3.501445 AGCTTGATTGAGTCTGAAACTGC 59.499 43.478 0.00 0.00 38.74 4.40
3901 4030 4.514441 ACAGCTTGATTGAGTCTGAAACTG 59.486 41.667 0.00 0.00 38.74 3.16
3902 4031 4.514441 CACAGCTTGATTGAGTCTGAAACT 59.486 41.667 0.00 0.00 42.42 2.66
3903 4032 4.512944 TCACAGCTTGATTGAGTCTGAAAC 59.487 41.667 0.00 0.00 0.00 2.78
3904 4033 4.707105 TCACAGCTTGATTGAGTCTGAAA 58.293 39.130 0.00 0.00 0.00 2.69
3905 4034 4.341366 TCACAGCTTGATTGAGTCTGAA 57.659 40.909 0.00 0.00 0.00 3.02
4002 4161 1.145598 TAAAACCGTGCACACCCGA 59.854 52.632 18.64 0.00 0.00 5.14
4003 4162 1.280444 GTAAAACCGTGCACACCCG 59.720 57.895 18.64 2.05 0.00 5.28
4005 4164 3.537471 GTGTAAAACCGTGCACACC 57.463 52.632 18.64 0.00 36.19 4.16
4006 4165 3.537471 GGTGTAAAACCGTGCACAC 57.463 52.632 18.64 6.73 39.81 3.82
4097 5326 2.555757 GCTGAGAGCCACTGTTTTGATT 59.444 45.455 0.00 0.00 34.48 2.57
4118 6489 2.029244 GCCGTCATGTCACTTTATGTCG 59.971 50.000 0.00 0.00 36.23 4.35
4151 6522 2.048127 GCCCGTGACACCTCTGTC 60.048 66.667 0.00 0.00 46.34 3.51
4191 6573 0.107831 TGACGTCCCAGGTTGGAAAG 59.892 55.000 14.12 0.00 40.96 2.62
4216 6599 4.124970 TGCTGATGATGCTCTTACATGAC 58.875 43.478 0.00 0.00 0.00 3.06
4217 6600 4.100498 TCTGCTGATGATGCTCTTACATGA 59.900 41.667 0.00 0.00 0.00 3.07
4221 6604 3.995705 GGATCTGCTGATGATGCTCTTAC 59.004 47.826 11.21 0.00 32.19 2.34
4232 6615 2.505819 ACGGTTTAAGGGATCTGCTGAT 59.494 45.455 5.69 5.69 35.26 2.90
4234 6617 2.009774 CACGGTTTAAGGGATCTGCTG 58.990 52.381 0.00 0.00 0.00 4.41
4241 6624 3.703052 GAGATCTACCACGGTTTAAGGGA 59.297 47.826 0.00 0.00 0.00 4.20
4250 6633 4.430908 GTGGTTTAAGAGATCTACCACGG 58.569 47.826 22.76 0.00 46.32 4.94
4253 6636 4.091549 ACCGTGGTTTAAGAGATCTACCA 58.908 43.478 9.79 9.79 36.58 3.25
4256 6639 6.105397 ACAAACCGTGGTTTAAGAGATCTA 57.895 37.500 16.18 0.00 45.32 1.98
4258 6641 5.684550 AACAAACCGTGGTTTAAGAGATC 57.315 39.130 16.18 0.00 45.32 2.75
4259 6642 6.459670 AAAACAAACCGTGGTTTAAGAGAT 57.540 33.333 16.18 0.00 45.61 2.75
4260 6643 5.900865 AAAACAAACCGTGGTTTAAGAGA 57.099 34.783 16.18 0.00 45.61 3.10
4261 6644 7.018635 TCTAAAACAAACCGTGGTTTAAGAG 57.981 36.000 16.18 7.26 46.37 2.85
4262 6645 6.598850 ACTCTAAAACAAACCGTGGTTTAAGA 59.401 34.615 16.18 12.31 46.37 2.10
4263 6646 6.788243 ACTCTAAAACAAACCGTGGTTTAAG 58.212 36.000 16.18 8.26 46.37 1.85
4264 6647 6.756299 ACTCTAAAACAAACCGTGGTTTAA 57.244 33.333 16.18 0.84 46.37 1.52
4265 6648 6.404513 CCAACTCTAAAACAAACCGTGGTTTA 60.405 38.462 16.18 0.66 45.61 2.01
4267 6650 4.142337 CCAACTCTAAAACAAACCGTGGTT 60.142 41.667 0.00 0.00 39.53 3.67
4268 6651 3.379057 CCAACTCTAAAACAAACCGTGGT 59.621 43.478 0.00 0.00 0.00 4.16
4269 6652 3.379057 ACCAACTCTAAAACAAACCGTGG 59.621 43.478 0.00 0.00 0.00 4.94
4270 6653 4.625972 ACCAACTCTAAAACAAACCGTG 57.374 40.909 0.00 0.00 0.00 4.94
4271 6654 5.648178 AAACCAACTCTAAAACAAACCGT 57.352 34.783 0.00 0.00 0.00 4.83
4272 6655 7.252708 ACTTAAACCAACTCTAAAACAAACCG 58.747 34.615 0.00 0.00 0.00 4.44
4273 6656 8.865978 CAACTTAAACCAACTCTAAAACAAACC 58.134 33.333 0.00 0.00 0.00 3.27
4274 6657 8.377681 GCAACTTAAACCAACTCTAAAACAAAC 58.622 33.333 0.00 0.00 0.00 2.93
4275 6658 7.273815 CGCAACTTAAACCAACTCTAAAACAAA 59.726 33.333 0.00 0.00 0.00 2.83
4276 6659 6.748198 CGCAACTTAAACCAACTCTAAAACAA 59.252 34.615 0.00 0.00 0.00 2.83
4278 6661 5.684184 CCGCAACTTAAACCAACTCTAAAAC 59.316 40.000 0.00 0.00 0.00 2.43
4279 6662 5.733937 GCCGCAACTTAAACCAACTCTAAAA 60.734 40.000 0.00 0.00 0.00 1.52
4280 6663 4.261280 GCCGCAACTTAAACCAACTCTAAA 60.261 41.667 0.00 0.00 0.00 1.85
4281 6664 3.251487 GCCGCAACTTAAACCAACTCTAA 59.749 43.478 0.00 0.00 0.00 2.10
4282 6665 2.809696 GCCGCAACTTAAACCAACTCTA 59.190 45.455 0.00 0.00 0.00 2.43
4284 6667 1.335597 GGCCGCAACTTAAACCAACTC 60.336 52.381 0.00 0.00 0.00 3.01
4288 6685 0.818445 TTCGGCCGCAACTTAAACCA 60.818 50.000 23.51 0.00 0.00 3.67
4294 6691 0.524414 GGTTTATTCGGCCGCAACTT 59.476 50.000 23.51 5.27 0.00 2.66
4297 6694 0.609681 AAGGGTTTATTCGGCCGCAA 60.610 50.000 23.51 16.35 0.00 4.85
4366 6769 3.423179 GTGGACACGGGCGAAAAA 58.577 55.556 0.00 0.00 0.00 1.94
4397 6800 4.213482 ACTGTTCATCGGTTTTGTAGAAGC 59.787 41.667 0.00 0.00 30.45 3.86
4400 6803 7.604549 TGTATACTGTTCATCGGTTTTGTAGA 58.395 34.615 4.17 0.00 36.91 2.59
4404 6807 6.523201 GCTTTGTATACTGTTCATCGGTTTTG 59.477 38.462 4.17 0.00 36.91 2.44
4413 6816 2.289756 TGGCCGCTTTGTATACTGTTCA 60.290 45.455 4.17 0.00 0.00 3.18
4421 6824 2.634600 TCGTATTTGGCCGCTTTGTAT 58.365 42.857 0.00 0.00 0.00 2.29
4422 6825 2.096220 TCGTATTTGGCCGCTTTGTA 57.904 45.000 0.00 0.00 0.00 2.41
4425 6828 0.170339 GCTTCGTATTTGGCCGCTTT 59.830 50.000 0.00 0.00 0.00 3.51
4449 6852 0.171455 CTTCGAGCTAGTTGGACGCT 59.829 55.000 0.00 0.00 36.57 5.07
4457 6860 0.685097 TTTGGCCACTTCGAGCTAGT 59.315 50.000 3.88 0.00 0.00 2.57
4471 6874 1.427819 CGGTGGCTTCGTATTTGGC 59.572 57.895 0.00 0.00 0.00 4.52
4484 6887 2.760159 CGTATTTGGCTGCCGGTGG 61.760 63.158 14.98 0.00 0.00 4.61
4485 6888 1.302383 TTCGTATTTGGCTGCCGGTG 61.302 55.000 14.98 0.00 0.00 4.94
4486 6889 1.003112 TTCGTATTTGGCTGCCGGT 60.003 52.632 14.98 4.85 0.00 5.28
4487 6890 1.721487 CTTCGTATTTGGCTGCCGG 59.279 57.895 14.98 0.00 0.00 6.13
4488 6891 1.062525 GCTTCGTATTTGGCTGCCG 59.937 57.895 14.98 0.36 0.00 5.69
4489 6892 1.433471 GGCTTCGTATTTGGCTGCC 59.567 57.895 12.87 12.87 0.00 4.85
4490 6893 1.062525 CGGCTTCGTATTTGGCTGC 59.937 57.895 0.00 0.00 0.00 5.25
4491 6894 1.062525 GCGGCTTCGTATTTGGCTG 59.937 57.895 0.00 0.00 36.07 4.85
4492 6895 2.112815 GGCGGCTTCGTATTTGGCT 61.113 57.895 0.00 0.00 36.07 4.75
4493 6896 2.407616 GGCGGCTTCGTATTTGGC 59.592 61.111 0.00 0.00 36.07 4.52
4494 6897 1.812093 TCGGCGGCTTCGTATTTGG 60.812 57.895 7.21 0.00 36.07 3.28
4495 6898 1.347221 GTCGGCGGCTTCGTATTTG 59.653 57.895 3.23 0.00 36.07 2.32
4496 6899 2.162754 CGTCGGCGGCTTCGTATTT 61.163 57.895 10.76 0.00 36.07 1.40
4497 6900 2.581409 CGTCGGCGGCTTCGTATT 60.581 61.111 10.76 0.00 36.07 1.89
4498 6901 3.746409 GACGTCGGCGGCTTCGTAT 62.746 63.158 22.61 6.83 44.12 3.06
4499 6902 4.465512 GACGTCGGCGGCTTCGTA 62.466 66.667 22.61 0.00 44.12 3.43
4506 6909 2.202570 CTAGTTGGACGTCGGCGG 60.203 66.667 16.39 0.00 43.45 6.13
4507 6910 2.879462 GCTAGTTGGACGTCGGCG 60.879 66.667 8.42 8.42 44.93 6.46
4508 6911 1.516603 GAGCTAGTTGGACGTCGGC 60.517 63.158 9.92 6.79 0.00 5.54
4509 6912 1.226323 CGAGCTAGTTGGACGTCGG 60.226 63.158 9.92 0.00 0.00 4.79
4510 6913 0.167470 TTCGAGCTAGTTGGACGTCG 59.833 55.000 9.92 0.00 0.00 5.12
4511 6914 1.199558 ACTTCGAGCTAGTTGGACGTC 59.800 52.381 7.13 7.13 0.00 4.34
4512 6915 1.068472 CACTTCGAGCTAGTTGGACGT 60.068 52.381 0.00 0.00 0.00 4.34
4513 6916 1.618861 CACTTCGAGCTAGTTGGACG 58.381 55.000 0.00 0.00 0.00 4.79
4514 6917 1.997669 CCACTTCGAGCTAGTTGGAC 58.002 55.000 6.17 0.00 0.00 4.02
4515 6918 0.246635 GCCACTTCGAGCTAGTTGGA 59.753 55.000 13.29 0.00 0.00 3.53
4516 6919 0.741221 GGCCACTTCGAGCTAGTTGG 60.741 60.000 0.00 0.00 0.00 3.77
4517 6920 0.037326 TGGCCACTTCGAGCTAGTTG 60.037 55.000 0.00 0.00 0.00 3.16
4518 6921 0.685097 TTGGCCACTTCGAGCTAGTT 59.315 50.000 3.88 0.00 0.00 2.24
4519 6922 0.685097 TTTGGCCACTTCGAGCTAGT 59.315 50.000 3.88 0.00 0.00 2.57
4520 6923 2.029838 ATTTGGCCACTTCGAGCTAG 57.970 50.000 3.88 0.00 0.00 3.42
4521 6924 2.235155 TGTATTTGGCCACTTCGAGCTA 59.765 45.455 3.88 0.00 0.00 3.32
4522 6925 1.003118 TGTATTTGGCCACTTCGAGCT 59.997 47.619 3.88 0.00 0.00 4.09
4523 6926 1.448985 TGTATTTGGCCACTTCGAGC 58.551 50.000 3.88 0.00 0.00 5.03
4524 6927 3.670627 GCTTTGTATTTGGCCACTTCGAG 60.671 47.826 3.88 0.00 0.00 4.04
4525 6928 2.227865 GCTTTGTATTTGGCCACTTCGA 59.772 45.455 3.88 0.00 0.00 3.71
4526 6929 2.595386 GCTTTGTATTTGGCCACTTCG 58.405 47.619 3.88 0.00 0.00 3.79
4527 6930 2.671070 CGGCTTTGTATTTGGCCACTTC 60.671 50.000 3.88 0.00 44.27 3.01
4528 6931 1.272212 CGGCTTTGTATTTGGCCACTT 59.728 47.619 3.88 0.00 44.27 3.16
4529 6932 0.887933 CGGCTTTGTATTTGGCCACT 59.112 50.000 3.88 0.00 44.27 4.00
4530 6933 0.735978 GCGGCTTTGTATTTGGCCAC 60.736 55.000 3.88 0.00 44.27 5.01
4531 6934 1.589113 GCGGCTTTGTATTTGGCCA 59.411 52.632 0.00 0.00 44.27 5.36
4532 6935 1.153647 GGCGGCTTTGTATTTGGCC 60.154 57.895 0.00 0.00 41.02 5.36
4533 6936 1.516169 CGGCGGCTTTGTATTTGGC 60.516 57.895 7.61 0.00 0.00 4.52
4534 6937 1.138671 CCGGCGGCTTTGTATTTGG 59.861 57.895 15.42 0.00 0.00 3.28
4535 6938 1.516169 GCCGGCGGCTTTGTATTTG 60.516 57.895 41.44 5.24 46.69 2.32
4536 6939 2.882132 GCCGGCGGCTTTGTATTT 59.118 55.556 41.44 0.00 46.69 1.40
4549 6952 3.887868 GCTGTATTTGGCCGCCGG 61.888 66.667 4.58 0.00 0.00 6.13
4550 6953 4.236416 CGCTGTATTTGGCCGCCG 62.236 66.667 4.58 0.00 0.00 6.46
4551 6954 4.552745 GCGCTGTATTTGGCCGCC 62.553 66.667 1.04 1.04 0.00 6.13
4552 6955 3.809775 TGCGCTGTATTTGGCCGC 61.810 61.111 9.73 0.00 0.00 6.53
4553 6956 2.100216 GTGCGCTGTATTTGGCCG 59.900 61.111 9.73 0.00 0.00 6.13
4554 6957 1.917782 TTCGTGCGCTGTATTTGGCC 61.918 55.000 9.73 0.00 0.00 5.36
4555 6958 0.109964 TTTCGTGCGCTGTATTTGGC 60.110 50.000 9.73 0.00 0.00 4.52
4556 6959 1.196808 AGTTTCGTGCGCTGTATTTGG 59.803 47.619 9.73 0.00 0.00 3.28
4557 6960 2.495939 GAGTTTCGTGCGCTGTATTTG 58.504 47.619 9.73 0.00 0.00 2.32
4558 6961 1.126113 CGAGTTTCGTGCGCTGTATTT 59.874 47.619 9.73 0.00 34.72 1.40
4559 6962 0.713883 CGAGTTTCGTGCGCTGTATT 59.286 50.000 9.73 0.00 34.72 1.89
4560 6963 0.109458 TCGAGTTTCGTGCGCTGTAT 60.109 50.000 9.73 0.00 41.35 2.29
4561 6964 0.318022 TTCGAGTTTCGTGCGCTGTA 60.318 50.000 9.73 0.00 41.35 2.74
4562 6965 0.944311 ATTCGAGTTTCGTGCGCTGT 60.944 50.000 9.73 0.00 41.35 4.40
4563 6966 0.246912 GATTCGAGTTTCGTGCGCTG 60.247 55.000 9.73 0.40 41.35 5.18
4564 6967 0.666274 TGATTCGAGTTTCGTGCGCT 60.666 50.000 9.73 0.00 41.35 5.92
4565 6968 0.162933 TTGATTCGAGTTTCGTGCGC 59.837 50.000 0.00 0.00 41.35 6.09
4566 6969 2.534939 GGATTGATTCGAGTTTCGTGCG 60.535 50.000 0.00 0.00 41.35 5.34
4567 6970 2.415168 TGGATTGATTCGAGTTTCGTGC 59.585 45.455 0.00 0.00 41.35 5.34
4568 6971 3.062639 CCTGGATTGATTCGAGTTTCGTG 59.937 47.826 0.00 0.00 41.35 4.35
4569 6972 3.056107 TCCTGGATTGATTCGAGTTTCGT 60.056 43.478 0.00 0.00 41.35 3.85
4570 6973 3.307242 GTCCTGGATTGATTCGAGTTTCG 59.693 47.826 0.00 0.00 42.10 3.46
4571 6974 3.623510 GGTCCTGGATTGATTCGAGTTTC 59.376 47.826 0.00 0.00 0.00 2.78
4572 6975 3.264450 AGGTCCTGGATTGATTCGAGTTT 59.736 43.478 0.00 0.00 0.00 2.66
4573 6976 2.840651 AGGTCCTGGATTGATTCGAGTT 59.159 45.455 0.00 0.00 0.00 3.01
4574 6977 2.472029 AGGTCCTGGATTGATTCGAGT 58.528 47.619 0.00 0.00 0.00 4.18
4656 7091 3.764466 ACGCCCGCTCTCTTCTGG 61.764 66.667 0.00 0.00 0.00 3.86
4658 7093 3.764466 CCACGCCCGCTCTCTTCT 61.764 66.667 0.00 0.00 0.00 2.85
4709 7145 4.180946 CACCCGTCTCGGCTCTCG 62.181 72.222 2.41 0.00 46.86 4.04
4710 7146 3.827898 CCACCCGTCTCGGCTCTC 61.828 72.222 2.41 0.00 46.86 3.20
4711 7147 4.361971 TCCACCCGTCTCGGCTCT 62.362 66.667 2.41 0.00 46.86 4.09
4725 7161 2.362503 ATGACTCGCTCCCGTCCA 60.363 61.111 0.00 0.00 35.54 4.02
4739 7175 2.306805 ACTGCCATCAGAACCTTCATGA 59.693 45.455 0.00 0.00 42.95 3.07
4750 7186 4.707030 TGCAAAAGATAACTGCCATCAG 57.293 40.909 0.00 0.00 45.71 2.90
4756 7192 6.640499 TGTTTGTACATGCAAAAGATAACTGC 59.360 34.615 0.00 0.00 39.65 4.40
4762 7198 7.385752 CCAAAGATGTTTGTACATGCAAAAGAT 59.614 33.333 13.69 0.00 44.90 2.40
4768 7204 5.981088 ATCCAAAGATGTTTGTACATGCA 57.019 34.783 13.69 0.00 44.90 3.96
4773 7209 5.391312 AGCCAATCCAAAGATGTTTGTAC 57.609 39.130 13.69 0.00 41.44 2.90
4778 7214 3.420893 TCGAAGCCAATCCAAAGATGTT 58.579 40.909 0.00 0.00 31.29 2.71
4779 7215 3.071874 TCGAAGCCAATCCAAAGATGT 57.928 42.857 0.00 0.00 31.29 3.06
4782 7218 3.443681 GGATTTCGAAGCCAATCCAAAGA 59.556 43.478 17.84 0.00 42.82 2.52
4789 7225 8.527810 TGTAAAAATAAGGATTTCGAAGCCAAT 58.472 29.630 17.93 10.08 40.13 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.