Multiple sequence alignment - TraesCS6A01G146300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G146300 chr6A 100.000 4271 0 0 1 4271 125258807 125263077 0.000000e+00 7888.0
1 TraesCS6A01G146300 chr6A 97.823 1240 27 0 1284 2523 611901858 611903097 0.000000e+00 2141.0
2 TraesCS6A01G146300 chr6A 93.327 1004 19 16 2522 3524 611903128 611904084 0.000000e+00 1439.0
3 TraesCS6A01G146300 chr6A 85.634 1253 167 3 1284 2523 612171467 612170215 0.000000e+00 1304.0
4 TraesCS6A01G146300 chr6A 84.151 795 102 13 1745 2523 612291719 612292505 0.000000e+00 749.0
5 TraesCS6A01G146300 chr6A 79.409 981 142 30 2522 3473 612301278 612302227 4.660000e-179 638.0
6 TraesCS6A01G146300 chr6A 92.342 444 10 5 3632 4075 611904092 611904511 1.020000e-170 610.0
7 TraesCS6A01G146300 chr6A 95.745 329 14 0 483 811 611901233 611901561 8.130000e-147 531.0
8 TraesCS6A01G146300 chr6A 92.857 364 25 1 449 811 612110007 612109644 1.050000e-145 527.0
9 TraesCS6A01G146300 chr6A 97.351 302 7 1 904 1204 611901560 611901861 2.950000e-141 512.0
10 TraesCS6A01G146300 chr6A 85.625 480 60 8 1303 1776 612291244 612291720 2.970000e-136 496.0
11 TraesCS6A01G146300 chr6A 81.570 586 73 20 2522 3081 612292533 612293109 6.510000e-123 451.0
12 TraesCS6A01G146300 chr6A 89.751 361 21 2 449 808 613078837 613079182 8.420000e-122 448.0
13 TraesCS6A01G146300 chr6A 79.955 449 74 7 2809 3256 612169846 612169413 2.480000e-82 316.0
14 TraesCS6A01G146300 chr6A 90.164 183 13 4 4076 4256 611904551 611904730 2.570000e-57 233.0
15 TraesCS6A01G146300 chr6A 83.626 171 25 3 447 615 612588602 612588771 1.590000e-34 158.0
16 TraesCS6A01G146300 chr6A 83.333 168 24 2 449 615 612299360 612299524 7.400000e-33 152.0
17 TraesCS6A01G146300 chr6A 81.461 178 27 5 449 625 612578535 612578363 1.600000e-29 141.0
18 TraesCS6A01G146300 chr6A 89.423 104 10 1 804 906 22550295 22550398 3.470000e-26 130.0
19 TraesCS6A01G146300 chr6A 78.571 224 22 8 939 1158 612171681 612171480 1.610000e-24 124.0
20 TraesCS6A01G146300 chr6A 82.645 121 11 6 938 1053 612299703 612299818 9.770000e-17 99.0
21 TraesCS6A01G146300 chr6A 98.077 52 1 0 359 410 597926560 597926509 1.640000e-14 91.6
22 TraesCS6A01G146300 chr6B 86.523 1254 155 3 1284 2523 711333969 711332716 0.000000e+00 1367.0
23 TraesCS6A01G146300 chr6B 84.980 1245 168 11 1285 2523 710684095 710682864 0.000000e+00 1245.0
24 TraesCS6A01G146300 chr6B 86.269 1005 101 22 2522 3503 711757208 711758198 0.000000e+00 1057.0
25 TraesCS6A01G146300 chr6B 83.941 741 113 5 1787 2523 710642124 710641386 0.000000e+00 704.0
26 TraesCS6A01G146300 chr6B 81.043 575 65 26 2522 3081 711360972 711361517 6.610000e-113 418.0
27 TraesCS6A01G146300 chr6B 87.158 366 31 7 447 811 710643389 710643039 6.650000e-108 401.0
28 TraesCS6A01G146300 chr6B 82.667 450 75 3 2809 3256 711332351 711331903 3.090000e-106 396.0
29 TraesCS6A01G146300 chr6B 81.609 435 77 3 2809 3241 710909736 710910169 1.460000e-94 357.0
30 TraesCS6A01G146300 chr6B 81.959 388 68 2 2855 3241 711382702 711383088 1.150000e-85 327.0
31 TraesCS6A01G146300 chr6B 89.024 246 17 5 447 692 711237949 711237714 3.230000e-76 296.0
32 TraesCS6A01G146300 chr6B 84.706 255 39 0 1432 1686 711756200 711756454 5.480000e-64 255.0
33 TraesCS6A01G146300 chr6B 90.476 189 16 2 610 796 711755541 711755729 9.170000e-62 248.0
34 TraesCS6A01G146300 chr6B 89.071 183 20 0 629 811 711876955 711877137 1.190000e-55 228.0
35 TraesCS6A01G146300 chr6B 84.951 206 21 8 4074 4271 650982126 650981923 2.600000e-47 200.0
36 TraesCS6A01G146300 chr6B 82.667 225 33 6 2522 2744 711332685 711332465 1.210000e-45 195.0
37 TraesCS6A01G146300 chr6B 82.488 217 38 0 1397 1613 711359913 711360129 1.570000e-44 191.0
38 TraesCS6A01G146300 chr6B 92.793 111 5 1 930 1040 711755771 711755878 1.590000e-34 158.0
39 TraesCS6A01G146300 chr6D 84.473 1185 155 9 1367 2523 466227298 466226115 0.000000e+00 1142.0
40 TraesCS6A01G146300 chr6D 85.031 795 95 13 1745 2523 466329580 466330366 0.000000e+00 787.0
41 TraesCS6A01G146300 chr6D 80.059 1018 156 30 2522 3521 465965555 465964567 0.000000e+00 712.0
42 TraesCS6A01G146300 chr6D 84.182 746 102 12 1787 2523 465744259 465743521 0.000000e+00 710.0
43 TraesCS6A01G146300 chr6D 90.164 366 33 3 447 810 465745570 465745206 1.390000e-129 473.0
44 TraesCS6A01G146300 chr6D 82.333 583 64 20 2522 3081 466330394 466330960 1.800000e-128 470.0
45 TraesCS6A01G146300 chr6D 89.276 373 22 7 1 358 325953415 325953046 6.510000e-123 451.0
46 TraesCS6A01G146300 chr6D 83.193 476 60 12 1303 1776 466329124 466329581 6.610000e-113 418.0
47 TraesCS6A01G146300 chr6D 80.438 593 65 28 2522 3094 465743490 465742929 5.140000e-109 405.0
48 TraesCS6A01G146300 chr6D 82.000 450 78 3 2809 3256 466225751 466225303 3.120000e-101 379.0
49 TraesCS6A01G146300 chr6D 81.215 362 42 10 451 811 462838929 462839265 7.040000e-68 268.0
50 TraesCS6A01G146300 chr6D 88.333 180 20 1 629 808 466621602 466621780 9.300000e-52 215.0
51 TraesCS6A01G146300 chr6D 89.565 115 10 2 224 338 132651726 132651614 1.240000e-30 145.0
52 TraesCS6A01G146300 chr6D 88.235 119 9 4 1201 1316 34809008 34808892 2.070000e-28 137.0
53 TraesCS6A01G146300 chr5D 83.067 815 94 26 2773 3566 24575521 24574730 0.000000e+00 701.0
54 TraesCS6A01G146300 chr5D 87.745 204 17 7 4074 4271 313204186 313203985 9.240000e-57 231.0
55 TraesCS6A01G146300 chr5D 87.845 181 15 3 933 1110 24616018 24615842 5.600000e-49 206.0
56 TraesCS6A01G146300 chr7A 94.737 361 17 2 1 361 180603230 180603588 1.040000e-155 560.0
57 TraesCS6A01G146300 chr7A 85.644 202 25 3 4074 4271 625068251 625068452 4.330000e-50 209.0
58 TraesCS6A01G146300 chr7A 94.175 103 3 3 1192 1293 14931588 14931488 2.060000e-33 154.0
59 TraesCS6A01G146300 chr7A 93.137 102 6 1 1201 1302 80994081 80994181 9.570000e-32 148.0
60 TraesCS6A01G146300 chrUn 91.092 348 17 6 1 336 26706079 26705734 3.890000e-125 459.0
61 TraesCS6A01G146300 chr1D 89.973 369 18 7 1 356 478975281 478975643 3.890000e-125 459.0
62 TraesCS6A01G146300 chr1D 86.290 124 6 5 796 908 22377341 22377218 1.610000e-24 124.0
63 TraesCS6A01G146300 chr4A 88.011 367 40 1 449 811 594050299 594049933 8.480000e-117 431.0
64 TraesCS6A01G146300 chr4A 87.379 103 12 1 807 908 440873790 440873892 2.700000e-22 117.0
65 TraesCS6A01G146300 chr4A 88.000 100 8 3 810 905 563075967 563075868 9.700000e-22 115.0
66 TraesCS6A01G146300 chr3B 90.615 309 17 6 49 357 465694359 465694063 2.390000e-107 399.0
67 TraesCS6A01G146300 chr7B 85.757 337 30 9 27 356 538369682 538370007 1.470000e-89 340.0
68 TraesCS6A01G146300 chr7B 98.077 52 1 0 359 410 336601397 336601448 1.640000e-14 91.6
69 TraesCS6A01G146300 chr4D 88.614 202 17 5 4074 4269 70500779 70500578 1.530000e-59 241.0
70 TraesCS6A01G146300 chr1B 88.108 185 18 3 4074 4254 16132189 16132005 2.590000e-52 217.0
71 TraesCS6A01G146300 chr1B 95.745 94 3 1 1193 1286 535908114 535908022 2.660000e-32 150.0
72 TraesCS6A01G146300 chr1B 87.879 99 9 3 810 906 610973267 610973170 3.490000e-21 113.0
73 TraesCS6A01G146300 chr4B 86.207 203 23 5 4074 4271 670840147 670839945 9.300000e-52 215.0
74 TraesCS6A01G146300 chr4B 87.701 187 16 5 4074 4254 177854506 177854321 1.200000e-50 211.0
75 TraesCS6A01G146300 chr3A 85.784 204 17 10 4074 4271 746225250 746225053 5.600000e-49 206.0
76 TraesCS6A01G146300 chr3A 85.000 120 6 7 800 907 664694756 664694637 1.260000e-20 111.0
77 TraesCS6A01G146300 chr3A 84.685 111 6 6 804 903 529672173 529672063 2.720000e-17 100.0
78 TraesCS6A01G146300 chr3A 100.000 30 0 0 4242 4271 44314383 44314412 5.970000e-04 56.5
79 TraesCS6A01G146300 chr5A 100.000 87 0 0 1200 1286 496022123 496022209 1.230000e-35 161.0
80 TraesCS6A01G146300 chr5A 94.118 102 2 3 1202 1299 376542004 376541903 7.400000e-33 152.0
81 TraesCS6A01G146300 chr5A 92.784 97 6 1 810 905 619456725 619456629 5.760000e-29 139.0
82 TraesCS6A01G146300 chr5A 88.571 105 5 5 809 906 549217486 549217382 2.090000e-23 121.0
83 TraesCS6A01G146300 chr5A 87.156 109 3 6 809 906 257556925 257556817 3.490000e-21 113.0
84 TraesCS6A01G146300 chr5A 87.879 99 7 3 810 907 559785668 559785762 1.260000e-20 111.0
85 TraesCS6A01G146300 chr5A 85.321 109 5 5 809 906 302993786 302993678 7.560000e-18 102.0
86 TraesCS6A01G146300 chr5A 75.573 131 21 10 4147 4271 112110510 112110635 2.000000e-03 54.7
87 TraesCS6A01G146300 chr5B 92.308 104 6 2 1193 1295 530041181 530041079 3.440000e-31 147.0
88 TraesCS6A01G146300 chr5B 86.992 123 16 0 218 340 108201861 108201983 5.760000e-29 139.0
89 TraesCS6A01G146300 chr2A 92.308 104 6 2 1198 1300 704759551 704759653 3.440000e-31 147.0
90 TraesCS6A01G146300 chr2A 86.239 109 4 5 809 906 471775593 471775485 1.620000e-19 108.0
91 TraesCS6A01G146300 chr7D 90.265 113 8 3 1195 1304 34754164 34754052 1.240000e-30 145.0
92 TraesCS6A01G146300 chr7D 100.000 28 0 0 3614 3641 478223148 478223121 8.000000e-03 52.8
93 TraesCS6A01G146300 chr2B 88.889 117 11 2 216 331 530830668 530830783 4.450000e-30 143.0
94 TraesCS6A01G146300 chr2B 88.034 117 12 2 216 331 530785010 530785125 2.070000e-28 137.0
95 TraesCS6A01G146300 chr2B 96.774 31 1 0 3615 3645 739859018 739858988 8.000000e-03 52.8
96 TraesCS6A01G146300 chr2D 86.441 118 4 7 799 905 349931228 349931344 7.500000e-23 119.0
97 TraesCS6A01G146300 chr1A 85.714 105 15 0 801 905 574351233 574351337 1.260000e-20 111.0
98 TraesCS6A01G146300 chr1A 85.586 111 5 6 804 903 488333076 488332966 5.840000e-19 106.0
99 TraesCS6A01G146300 chr1A 85.000 100 15 0 810 909 97158994 97159093 7.560000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G146300 chr6A 125258807 125263077 4270 False 7888.000000 7888 100.000000 1 4271 1 chr6A.!!$F2 4270
1 TraesCS6A01G146300 chr6A 611901233 611904730 3497 False 911.000000 2141 94.458667 483 4256 6 chr6A.!!$F5 3773
2 TraesCS6A01G146300 chr6A 612169413 612171681 2268 True 581.333333 1304 81.386667 939 3256 3 chr6A.!!$R4 2317
3 TraesCS6A01G146300 chr6A 612291244 612293109 1865 False 565.333333 749 83.782000 1303 3081 3 chr6A.!!$F6 1778
4 TraesCS6A01G146300 chr6A 612299360 612302227 2867 False 296.333333 638 81.795667 449 3473 3 chr6A.!!$F7 3024
5 TraesCS6A01G146300 chr6B 710682864 710684095 1231 True 1245.000000 1245 84.980000 1285 2523 1 chr6B.!!$R2 1238
6 TraesCS6A01G146300 chr6B 711331903 711333969 2066 True 652.666667 1367 83.952333 1284 3256 3 chr6B.!!$R5 1972
7 TraesCS6A01G146300 chr6B 710641386 710643389 2003 True 552.500000 704 85.549500 447 2523 2 chr6B.!!$R4 2076
8 TraesCS6A01G146300 chr6B 711755541 711758198 2657 False 429.500000 1057 88.561000 610 3503 4 chr6B.!!$F5 2893
9 TraesCS6A01G146300 chr6B 711359913 711361517 1604 False 304.500000 418 81.765500 1397 3081 2 chr6B.!!$F4 1684
10 TraesCS6A01G146300 chr6D 466225303 466227298 1995 True 760.500000 1142 83.236500 1367 3256 2 chr6D.!!$R6 1889
11 TraesCS6A01G146300 chr6D 465964567 465965555 988 True 712.000000 712 80.059000 2522 3521 1 chr6D.!!$R4 999
12 TraesCS6A01G146300 chr6D 466329124 466330960 1836 False 558.333333 787 83.519000 1303 3081 3 chr6D.!!$F3 1778
13 TraesCS6A01G146300 chr6D 465742929 465745570 2641 True 529.333333 710 84.928000 447 3094 3 chr6D.!!$R5 2647
14 TraesCS6A01G146300 chr5D 24574730 24575521 791 True 701.000000 701 83.067000 2773 3566 1 chr5D.!!$R1 793

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
821 824 0.033405 TAGCAGCTACTCCCTCCGTT 60.033 55.0 0.00 0.00 0.00 4.44 F
825 828 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.0 0.00 0.00 0.00 3.53 F
826 829 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.0 0.00 0.00 0.00 3.28 F
1711 2085 0.616679 AGCTTTGGCCAATGCAGGAT 60.617 50.0 41.21 26.67 42.01 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2714 3224 3.701542 CTGTCTCATAGTAGAGCAACCCA 59.298 47.826 0.0 0.0 35.59 4.51 R
2913 3491 3.432326 GGACACCCTTGTTCCTGCTATAG 60.432 52.174 0.0 0.0 35.47 1.31 R
3173 3769 1.139853 ACTCGATGCCCTTCCTGATTC 59.860 52.381 0.0 0.0 0.00 2.52 R
3555 4179 0.390492 TAGATGGTCTGCCGATGCTG 59.610 55.000 0.0 0.0 38.71 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.322212 AGCGAGATGATAGCGACGT 58.678 52.632 0.00 0.00 34.23 4.34
19 20 0.040870 AGCGAGATGATAGCGACGTG 60.041 55.000 0.00 0.00 34.23 4.49
20 21 1.601147 GCGAGATGATAGCGACGTGC 61.601 60.000 0.00 0.00 46.98 5.34
37 38 4.069232 CCTCCTGGCACGAGCGAA 62.069 66.667 7.85 0.00 43.41 4.70
38 39 2.811317 CTCCTGGCACGAGCGAAC 60.811 66.667 0.00 0.00 43.41 3.95
39 40 4.717629 TCCTGGCACGAGCGAACG 62.718 66.667 0.00 0.00 43.41 3.95
40 41 4.717629 CCTGGCACGAGCGAACGA 62.718 66.667 8.50 0.00 43.41 3.85
41 42 3.175240 CTGGCACGAGCGAACGAG 61.175 66.667 8.50 2.28 43.41 4.18
42 43 3.610791 CTGGCACGAGCGAACGAGA 62.611 63.158 8.50 0.00 43.41 4.04
43 44 2.876645 GGCACGAGCGAACGAGAG 60.877 66.667 8.50 0.56 43.41 3.20
44 45 2.176055 GCACGAGCGAACGAGAGA 59.824 61.111 8.50 0.00 37.03 3.10
45 46 1.865622 GCACGAGCGAACGAGAGAG 60.866 63.158 8.50 0.00 37.03 3.20
46 47 1.788481 CACGAGCGAACGAGAGAGA 59.212 57.895 8.50 0.00 37.03 3.10
47 48 0.519586 CACGAGCGAACGAGAGAGAC 60.520 60.000 8.50 0.00 37.03 3.36
48 49 1.296288 CGAGCGAACGAGAGAGACG 60.296 63.158 0.00 0.00 35.09 4.18
49 50 1.789116 GAGCGAACGAGAGAGACGT 59.211 57.895 0.00 0.00 45.89 4.34
50 51 0.519586 GAGCGAACGAGAGAGACGTG 60.520 60.000 0.00 0.00 43.16 4.49
51 52 2.147133 GCGAACGAGAGAGACGTGC 61.147 63.158 0.00 0.00 43.16 5.34
52 53 1.512310 CGAACGAGAGAGACGTGCC 60.512 63.158 0.00 0.00 43.16 5.01
53 54 1.877367 GAACGAGAGAGACGTGCCT 59.123 57.895 0.00 0.00 43.16 4.75
54 55 0.179184 GAACGAGAGAGACGTGCCTC 60.179 60.000 0.00 0.00 43.16 4.70
55 56 1.587933 AACGAGAGAGACGTGCCTCC 61.588 60.000 0.00 0.00 43.16 4.30
56 57 1.747367 CGAGAGAGACGTGCCTCCT 60.747 63.158 0.00 0.00 33.76 3.69
57 58 1.711060 CGAGAGAGACGTGCCTCCTC 61.711 65.000 0.00 2.98 33.76 3.71
58 59 1.379309 AGAGAGACGTGCCTCCTCC 60.379 63.158 0.00 0.00 33.76 4.30
59 60 1.679305 GAGAGACGTGCCTCCTCCA 60.679 63.158 0.00 0.00 33.76 3.86
60 61 1.939769 GAGAGACGTGCCTCCTCCAC 61.940 65.000 0.00 0.00 33.76 4.02
65 66 4.803426 GTGCCTCCTCCACGAGCG 62.803 72.222 0.00 0.00 0.00 5.03
68 69 4.803426 CCTCCTCCACGAGCGCAC 62.803 72.222 11.47 0.96 0.00 5.34
83 84 3.941194 GCACGACGCGTAAGATTTT 57.059 47.368 13.97 0.00 38.32 1.82
84 85 2.221799 GCACGACGCGTAAGATTTTT 57.778 45.000 13.97 0.00 38.32 1.94
106 107 4.537135 TTTTAGAGGCAAGAGATCACGT 57.463 40.909 0.00 0.00 0.00 4.49
107 108 5.654603 TTTTAGAGGCAAGAGATCACGTA 57.345 39.130 0.00 0.00 0.00 3.57
108 109 4.634184 TTAGAGGCAAGAGATCACGTAC 57.366 45.455 0.00 0.00 0.00 3.67
109 110 1.402259 AGAGGCAAGAGATCACGTACG 59.598 52.381 15.01 15.01 0.00 3.67
110 111 1.132643 GAGGCAAGAGATCACGTACGT 59.867 52.381 16.72 16.72 0.00 3.57
111 112 2.353889 GAGGCAAGAGATCACGTACGTA 59.646 50.000 22.34 10.16 0.00 3.57
112 113 2.355132 AGGCAAGAGATCACGTACGTAG 59.645 50.000 22.34 15.25 0.00 3.51
113 114 2.110226 GCAAGAGATCACGTACGTAGC 58.890 52.381 22.34 12.97 0.00 3.58
114 115 2.477357 GCAAGAGATCACGTACGTAGCA 60.477 50.000 22.34 8.49 0.00 3.49
115 116 3.792459 GCAAGAGATCACGTACGTAGCAT 60.792 47.826 22.34 13.15 0.00 3.79
116 117 3.610786 AGAGATCACGTACGTAGCATG 57.389 47.619 22.34 8.62 0.00 4.06
117 118 2.044860 GAGATCACGTACGTAGCATGC 58.955 52.381 22.34 10.51 0.00 4.06
118 119 1.129326 GATCACGTACGTAGCATGCC 58.871 55.000 22.34 0.00 0.00 4.40
119 120 0.744874 ATCACGTACGTAGCATGCCT 59.255 50.000 22.34 4.37 0.00 4.75
120 121 0.099968 TCACGTACGTAGCATGCCTC 59.900 55.000 22.34 6.87 0.00 4.70
121 122 1.063649 ACGTACGTAGCATGCCTCG 59.936 57.895 21.41 23.82 0.00 4.63
122 123 1.354155 CGTACGTAGCATGCCTCGA 59.646 57.895 29.42 15.54 0.00 4.04
123 124 0.040336 CGTACGTAGCATGCCTCGAT 60.040 55.000 29.42 19.02 0.00 3.59
124 125 1.599667 CGTACGTAGCATGCCTCGATT 60.600 52.381 29.42 15.99 0.00 3.34
125 126 2.470821 GTACGTAGCATGCCTCGATTT 58.529 47.619 29.42 15.44 0.00 2.17
126 127 1.290203 ACGTAGCATGCCTCGATTTG 58.710 50.000 29.42 9.98 0.00 2.32
127 128 1.290203 CGTAGCATGCCTCGATTTGT 58.710 50.000 21.97 1.25 0.00 2.83
128 129 1.665679 CGTAGCATGCCTCGATTTGTT 59.334 47.619 21.97 0.54 0.00 2.83
129 130 2.863740 CGTAGCATGCCTCGATTTGTTA 59.136 45.455 21.97 0.00 0.00 2.41
130 131 3.302480 CGTAGCATGCCTCGATTTGTTAC 60.302 47.826 21.97 10.36 0.00 2.50
131 132 2.991250 AGCATGCCTCGATTTGTTACT 58.009 42.857 15.66 0.00 0.00 2.24
132 133 3.347216 AGCATGCCTCGATTTGTTACTT 58.653 40.909 15.66 0.00 0.00 2.24
133 134 3.375299 AGCATGCCTCGATTTGTTACTTC 59.625 43.478 15.66 0.00 0.00 3.01
134 135 3.375299 GCATGCCTCGATTTGTTACTTCT 59.625 43.478 6.36 0.00 0.00 2.85
135 136 4.142600 GCATGCCTCGATTTGTTACTTCTT 60.143 41.667 6.36 0.00 0.00 2.52
136 137 5.619981 GCATGCCTCGATTTGTTACTTCTTT 60.620 40.000 6.36 0.00 0.00 2.52
137 138 6.381801 CATGCCTCGATTTGTTACTTCTTTT 58.618 36.000 0.00 0.00 0.00 2.27
138 139 6.385649 TGCCTCGATTTGTTACTTCTTTTT 57.614 33.333 0.00 0.00 0.00 1.94
158 159 5.873179 TTTTTATGAGAAAACGCCTCGAT 57.127 34.783 0.00 0.00 33.51 3.59
159 160 5.464965 TTTTATGAGAAAACGCCTCGATC 57.535 39.130 0.00 0.00 33.51 3.69
160 161 2.969628 ATGAGAAAACGCCTCGATCT 57.030 45.000 0.00 0.00 33.51 2.75
161 162 1.996292 TGAGAAAACGCCTCGATCTG 58.004 50.000 0.00 0.00 33.51 2.90
162 163 0.647925 GAGAAAACGCCTCGATCTGC 59.352 55.000 0.00 0.00 0.00 4.26
163 164 0.741221 AGAAAACGCCTCGATCTGCC 60.741 55.000 0.00 0.00 0.00 4.85
164 165 0.741221 GAAAACGCCTCGATCTGCCT 60.741 55.000 0.00 0.00 0.00 4.75
165 166 0.741221 AAAACGCCTCGATCTGCCTC 60.741 55.000 0.00 0.00 0.00 4.70
166 167 1.608717 AAACGCCTCGATCTGCCTCT 61.609 55.000 0.00 0.00 0.00 3.69
167 168 2.010582 AACGCCTCGATCTGCCTCTC 62.011 60.000 0.00 0.00 0.00 3.20
168 169 2.334653 GCCTCGATCTGCCTCTCG 59.665 66.667 0.00 0.00 36.25 4.04
169 170 2.485795 GCCTCGATCTGCCTCTCGT 61.486 63.158 0.00 0.00 36.33 4.18
170 171 1.358402 CCTCGATCTGCCTCTCGTG 59.642 63.158 0.00 0.00 36.33 4.35
171 172 1.299014 CTCGATCTGCCTCTCGTGC 60.299 63.158 0.00 0.00 36.33 5.34
172 173 1.723608 CTCGATCTGCCTCTCGTGCT 61.724 60.000 0.00 0.00 36.33 4.40
173 174 1.588403 CGATCTGCCTCTCGTGCTG 60.588 63.158 0.00 0.00 0.00 4.41
174 175 1.227205 GATCTGCCTCTCGTGCTGG 60.227 63.158 0.00 0.00 0.00 4.85
175 176 3.382803 ATCTGCCTCTCGTGCTGGC 62.383 63.158 12.29 12.29 46.26 4.85
178 179 4.129737 GCCTCTCGTGCTGGCGTA 62.130 66.667 5.79 0.00 37.11 4.42
179 180 2.202623 CCTCTCGTGCTGGCGTAC 60.203 66.667 0.00 0.00 0.00 3.67
180 181 2.701780 CCTCTCGTGCTGGCGTACT 61.702 63.158 0.00 0.00 0.00 2.73
181 182 1.213013 CTCTCGTGCTGGCGTACTT 59.787 57.895 0.00 0.00 0.00 2.24
182 183 0.450583 CTCTCGTGCTGGCGTACTTA 59.549 55.000 0.00 0.00 0.00 2.24
183 184 0.169672 TCTCGTGCTGGCGTACTTAC 59.830 55.000 0.00 0.00 0.00 2.34
184 185 0.801067 CTCGTGCTGGCGTACTTACC 60.801 60.000 0.00 0.00 0.00 2.85
185 186 2.156446 CGTGCTGGCGTACTTACCG 61.156 63.158 0.00 0.00 0.00 4.02
186 187 1.808390 GTGCTGGCGTACTTACCGG 60.808 63.158 0.00 0.00 35.26 5.28
187 188 2.202837 GCTGGCGTACTTACCGGG 60.203 66.667 6.32 0.00 32.55 5.73
188 189 2.202837 CTGGCGTACTTACCGGGC 60.203 66.667 6.32 0.00 0.00 6.13
189 190 3.728279 CTGGCGTACTTACCGGGCC 62.728 68.421 6.32 7.66 44.00 5.80
190 191 3.773404 GGCGTACTTACCGGGCCA 61.773 66.667 6.32 0.00 43.23 5.36
191 192 2.202837 GCGTACTTACCGGGCCAG 60.203 66.667 6.32 0.00 0.00 4.85
192 193 2.202837 CGTACTTACCGGGCCAGC 60.203 66.667 6.32 0.00 0.00 4.85
193 194 2.202837 GTACTTACCGGGCCAGCG 60.203 66.667 6.32 0.00 0.00 5.18
194 195 2.681064 TACTTACCGGGCCAGCGT 60.681 61.111 6.32 3.47 0.00 5.07
195 196 3.009192 TACTTACCGGGCCAGCGTG 62.009 63.158 6.32 0.00 0.00 5.34
215 216 2.358737 GGCACGTTCACTGAGGGG 60.359 66.667 0.00 0.00 0.00 4.79
216 217 3.050275 GCACGTTCACTGAGGGGC 61.050 66.667 0.00 0.00 0.00 5.80
217 218 2.358737 CACGTTCACTGAGGGGCC 60.359 66.667 0.00 0.00 0.00 5.80
218 219 4.003788 ACGTTCACTGAGGGGCCG 62.004 66.667 0.00 0.00 0.00 6.13
219 220 4.003788 CGTTCACTGAGGGGCCGT 62.004 66.667 0.00 0.00 0.00 5.68
220 221 2.358737 GTTCACTGAGGGGCCGTG 60.359 66.667 2.05 2.74 0.00 4.94
221 222 4.329545 TTCACTGAGGGGCCGTGC 62.330 66.667 2.05 0.00 0.00 5.34
223 224 4.335647 CACTGAGGGGCCGTGCTT 62.336 66.667 2.05 0.00 0.00 3.91
224 225 4.335647 ACTGAGGGGCCGTGCTTG 62.336 66.667 2.05 0.00 0.00 4.01
246 247 4.664677 GTGGAGGTCAGCACGCGT 62.665 66.667 5.58 5.58 0.00 6.01
247 248 4.662961 TGGAGGTCAGCACGCGTG 62.663 66.667 34.01 34.01 0.00 5.34
272 273 3.165685 GGCCCGGCCCATGTACTA 61.166 66.667 18.83 0.00 44.06 1.82
273 274 2.748513 GGCCCGGCCCATGTACTAA 61.749 63.158 18.83 0.00 44.06 2.24
274 275 1.227853 GCCCGGCCCATGTACTAAG 60.228 63.158 0.00 0.00 0.00 2.18
275 276 1.227853 CCCGGCCCATGTACTAAGC 60.228 63.158 0.00 0.00 0.00 3.09
276 277 1.594293 CCGGCCCATGTACTAAGCG 60.594 63.158 0.00 0.00 0.00 4.68
277 278 1.143183 CGGCCCATGTACTAAGCGT 59.857 57.895 0.00 0.00 0.00 5.07
278 279 1.151777 CGGCCCATGTACTAAGCGTG 61.152 60.000 0.00 0.00 0.00 5.34
279 280 1.436983 GGCCCATGTACTAAGCGTGC 61.437 60.000 0.00 0.00 0.00 5.34
280 281 0.462047 GCCCATGTACTAAGCGTGCT 60.462 55.000 0.00 0.00 0.00 4.40
281 282 2.012051 GCCCATGTACTAAGCGTGCTT 61.012 52.381 12.30 12.30 39.83 3.91
282 283 1.665679 CCCATGTACTAAGCGTGCTTG 59.334 52.381 16.98 9.39 37.47 4.01
283 284 1.665679 CCATGTACTAAGCGTGCTTGG 59.334 52.381 16.98 16.10 43.45 3.61
284 285 2.346803 CATGTACTAAGCGTGCTTGGT 58.653 47.619 23.84 23.84 46.75 3.67
285 286 2.074547 TGTACTAAGCGTGCTTGGTC 57.925 50.000 24.03 16.47 42.73 4.02
286 287 0.989890 GTACTAAGCGTGCTTGGTCG 59.010 55.000 24.03 9.43 42.73 4.79
287 288 0.108992 TACTAAGCGTGCTTGGTCGG 60.109 55.000 24.03 8.70 42.73 4.79
288 289 2.047655 TAAGCGTGCTTGGTCGGG 60.048 61.111 16.98 0.00 37.47 5.14
311 312 2.033448 CCGTGCCTGGCCTGTTTA 59.967 61.111 17.53 0.00 0.00 2.01
312 313 1.602323 CCGTGCCTGGCCTGTTTAA 60.602 57.895 17.53 0.00 0.00 1.52
313 314 1.579429 CGTGCCTGGCCTGTTTAAC 59.421 57.895 17.53 4.53 0.00 2.01
314 315 0.889186 CGTGCCTGGCCTGTTTAACT 60.889 55.000 17.53 0.00 0.00 2.24
315 316 1.328279 GTGCCTGGCCTGTTTAACTT 58.672 50.000 17.53 0.00 0.00 2.66
316 317 2.510613 GTGCCTGGCCTGTTTAACTTA 58.489 47.619 17.53 0.00 0.00 2.24
317 318 2.488153 GTGCCTGGCCTGTTTAACTTAG 59.512 50.000 17.53 0.00 0.00 2.18
318 319 2.092323 GCCTGGCCTGTTTAACTTAGG 58.908 52.381 7.66 0.00 34.67 2.69
323 324 1.746470 CCTGTTTAACTTAGGCCGGG 58.254 55.000 2.18 0.00 0.00 5.73
324 325 1.092348 CTGTTTAACTTAGGCCGGGC 58.908 55.000 22.67 22.67 0.00 6.13
346 347 3.124921 CCGTGCCGGCCTGTTTAG 61.125 66.667 26.77 6.92 41.17 1.85
347 348 3.799755 CGTGCCGGCCTGTTTAGC 61.800 66.667 26.77 2.72 0.00 3.09
357 358 1.327303 CCTGTTTAGCCAGGTTTGCA 58.673 50.000 0.00 0.00 45.81 4.08
358 359 1.270550 CCTGTTTAGCCAGGTTTGCAG 59.729 52.381 0.00 0.00 45.81 4.41
359 360 0.673437 TGTTTAGCCAGGTTTGCAGC 59.327 50.000 0.00 0.00 0.00 5.25
360 361 0.387239 GTTTAGCCAGGTTTGCAGCG 60.387 55.000 0.00 0.00 0.00 5.18
361 362 0.536233 TTTAGCCAGGTTTGCAGCGA 60.536 50.000 0.00 0.00 0.00 4.93
362 363 0.955428 TTAGCCAGGTTTGCAGCGAG 60.955 55.000 0.00 0.00 0.00 5.03
363 364 2.803155 TAGCCAGGTTTGCAGCGAGG 62.803 60.000 0.00 0.00 0.00 4.63
364 365 2.032528 CCAGGTTTGCAGCGAGGA 59.967 61.111 0.00 0.00 0.00 3.71
365 366 1.600636 CCAGGTTTGCAGCGAGGAA 60.601 57.895 0.00 0.00 0.00 3.36
366 367 1.172180 CCAGGTTTGCAGCGAGGAAA 61.172 55.000 0.00 0.00 34.98 3.13
367 368 0.667993 CAGGTTTGCAGCGAGGAAAA 59.332 50.000 0.92 0.00 39.36 2.29
368 369 1.270550 CAGGTTTGCAGCGAGGAAAAT 59.729 47.619 0.92 0.00 39.36 1.82
369 370 1.541588 AGGTTTGCAGCGAGGAAAATC 59.458 47.619 0.92 0.00 39.36 2.17
370 371 1.402852 GGTTTGCAGCGAGGAAAATCC 60.403 52.381 0.92 0.00 39.36 3.01
381 382 1.560146 AGGAAAATCCTCTCGGAACCC 59.440 52.381 0.00 0.00 45.66 4.11
382 383 1.408405 GGAAAATCCTCTCGGAACCCC 60.408 57.143 0.00 0.00 44.02 4.95
383 384 1.560146 GAAAATCCTCTCGGAACCCCT 59.440 52.381 0.00 0.00 44.02 4.79
384 385 1.205055 AAATCCTCTCGGAACCCCTC 58.795 55.000 0.00 0.00 44.02 4.30
385 386 0.691413 AATCCTCTCGGAACCCCTCC 60.691 60.000 0.00 0.00 44.02 4.30
386 387 2.607139 ATCCTCTCGGAACCCCTCCC 62.607 65.000 0.00 0.00 44.02 4.30
387 388 2.038975 CTCTCGGAACCCCTCCCA 59.961 66.667 0.00 0.00 41.87 4.37
388 389 1.383248 CTCTCGGAACCCCTCCCAT 60.383 63.158 0.00 0.00 41.87 4.00
389 390 1.382695 TCTCGGAACCCCTCCCATC 60.383 63.158 0.00 0.00 41.87 3.51
390 391 2.366435 TCGGAACCCCTCCCATCC 60.366 66.667 0.00 0.00 41.87 3.51
391 392 2.690881 CGGAACCCCTCCCATCCA 60.691 66.667 0.00 0.00 41.87 3.41
392 393 3.007542 GGAACCCCTCCCATCCAC 58.992 66.667 0.00 0.00 38.44 4.02
393 394 1.619669 GGAACCCCTCCCATCCACT 60.620 63.158 0.00 0.00 38.44 4.00
394 395 1.636769 GGAACCCCTCCCATCCACTC 61.637 65.000 0.00 0.00 38.44 3.51
395 396 1.972660 GAACCCCTCCCATCCACTCG 61.973 65.000 0.00 0.00 0.00 4.18
396 397 3.866582 CCCCTCCCATCCACTCGC 61.867 72.222 0.00 0.00 0.00 5.03
397 398 4.227134 CCCTCCCATCCACTCGCG 62.227 72.222 0.00 0.00 0.00 5.87
398 399 4.899239 CCTCCCATCCACTCGCGC 62.899 72.222 0.00 0.00 0.00 6.86
399 400 4.899239 CTCCCATCCACTCGCGCC 62.899 72.222 0.00 0.00 0.00 6.53
401 402 4.776322 CCCATCCACTCGCGCCAA 62.776 66.667 0.00 0.00 0.00 4.52
402 403 2.745884 CCATCCACTCGCGCCAAA 60.746 61.111 0.00 0.00 0.00 3.28
403 404 2.480555 CATCCACTCGCGCCAAAC 59.519 61.111 0.00 0.00 0.00 2.93
415 416 2.590092 CCAAACGAGGCCCTAGGG 59.410 66.667 24.89 24.89 38.57 3.53
416 417 2.298661 CCAAACGAGGCCCTAGGGT 61.299 63.158 28.96 10.51 37.65 4.34
417 418 1.683441 CAAACGAGGCCCTAGGGTT 59.317 57.895 28.96 17.62 37.65 4.11
418 419 0.392595 CAAACGAGGCCCTAGGGTTC 60.393 60.000 28.96 23.35 37.65 3.62
419 420 1.559965 AAACGAGGCCCTAGGGTTCC 61.560 60.000 28.96 21.67 37.65 3.62
420 421 2.365105 CGAGGCCCTAGGGTTCCA 60.365 66.667 28.96 0.00 37.65 3.53
421 422 2.732619 CGAGGCCCTAGGGTTCCAC 61.733 68.421 28.96 18.81 37.65 4.02
422 423 2.286197 AGGCCCTAGGGTTCCACC 60.286 66.667 28.96 20.20 37.60 4.61
423 424 2.612746 GGCCCTAGGGTTCCACCA 60.613 66.667 28.96 0.00 41.02 4.17
424 425 2.680370 GGCCCTAGGGTTCCACCAG 61.680 68.421 28.96 0.27 41.02 4.00
425 426 1.615424 GCCCTAGGGTTCCACCAGA 60.615 63.158 28.96 0.00 41.02 3.86
426 427 1.627297 GCCCTAGGGTTCCACCAGAG 61.627 65.000 28.96 0.00 41.02 3.35
427 428 0.042731 CCCTAGGGTTCCACCAGAGA 59.957 60.000 20.88 0.00 41.02 3.10
428 429 1.554822 CCCTAGGGTTCCACCAGAGAA 60.555 57.143 20.88 0.00 41.02 2.87
429 430 1.555533 CCTAGGGTTCCACCAGAGAAC 59.444 57.143 0.00 0.00 41.02 3.01
430 431 2.257207 CTAGGGTTCCACCAGAGAACA 58.743 52.381 6.04 0.00 44.40 3.18
431 432 1.518367 AGGGTTCCACCAGAGAACAA 58.482 50.000 6.04 0.00 44.40 2.83
432 433 1.850345 AGGGTTCCACCAGAGAACAAA 59.150 47.619 6.04 0.00 44.40 2.83
433 434 2.158608 AGGGTTCCACCAGAGAACAAAG 60.159 50.000 6.04 0.00 44.40 2.77
434 435 2.230660 GGTTCCACCAGAGAACAAAGG 58.769 52.381 6.04 0.00 44.40 3.11
435 436 2.230660 GTTCCACCAGAGAACAAAGGG 58.769 52.381 0.00 0.00 42.58 3.95
436 437 0.771127 TCCACCAGAGAACAAAGGGG 59.229 55.000 0.00 0.00 0.00 4.79
437 438 0.771127 CCACCAGAGAACAAAGGGGA 59.229 55.000 0.00 0.00 0.00 4.81
438 439 1.355720 CCACCAGAGAACAAAGGGGAT 59.644 52.381 0.00 0.00 0.00 3.85
439 440 2.619074 CCACCAGAGAACAAAGGGGATC 60.619 54.545 0.00 0.00 0.00 3.36
440 441 1.279271 ACCAGAGAACAAAGGGGATCG 59.721 52.381 0.00 0.00 0.00 3.69
441 442 1.407437 CCAGAGAACAAAGGGGATCGG 60.407 57.143 0.00 0.00 0.00 4.18
442 443 0.912486 AGAGAACAAAGGGGATCGGG 59.088 55.000 0.00 0.00 0.00 5.14
443 444 0.107165 GAGAACAAAGGGGATCGGGG 60.107 60.000 0.00 0.00 0.00 5.73
444 445 1.076995 GAACAAAGGGGATCGGGGG 60.077 63.158 0.00 0.00 0.00 5.40
445 446 1.855451 AACAAAGGGGATCGGGGGT 60.855 57.895 0.00 0.00 0.00 4.95
452 453 1.770518 GGGATCGGGGGTCCATCTT 60.771 63.158 0.00 0.00 37.49 2.40
572 573 1.407437 GCACTCCCCAATCGAATCAGT 60.407 52.381 0.00 0.00 0.00 3.41
637 638 2.048222 CTTTCCGAGCTGCGACCA 60.048 61.111 0.00 0.00 44.57 4.02
715 718 1.408822 CCCTTCTTTAGCCGCAATCCT 60.409 52.381 0.00 0.00 0.00 3.24
811 814 0.319986 GGCGGGAATCTAGCAGCTAC 60.320 60.000 0.00 0.00 0.00 3.58
812 815 0.676736 GCGGGAATCTAGCAGCTACT 59.323 55.000 0.00 0.00 0.00 2.57
813 816 1.336424 GCGGGAATCTAGCAGCTACTC 60.336 57.143 0.00 0.00 0.00 2.59
814 817 1.271102 CGGGAATCTAGCAGCTACTCC 59.729 57.143 0.00 5.09 0.00 3.85
816 819 2.604139 GGAATCTAGCAGCTACTCCCT 58.396 52.381 0.00 0.00 0.00 4.20
817 820 2.560981 GGAATCTAGCAGCTACTCCCTC 59.439 54.545 0.00 0.00 0.00 4.30
819 822 0.179015 TCTAGCAGCTACTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
821 824 0.033405 TAGCAGCTACTCCCTCCGTT 60.033 55.000 0.00 0.00 0.00 4.44
822 825 1.142097 GCAGCTACTCCCTCCGTTC 59.858 63.158 0.00 0.00 0.00 3.95
823 826 1.817209 CAGCTACTCCCTCCGTTCC 59.183 63.158 0.00 0.00 0.00 3.62
824 827 0.970937 CAGCTACTCCCTCCGTTCCA 60.971 60.000 0.00 0.00 0.00 3.53
825 828 0.252103 AGCTACTCCCTCCGTTCCAA 60.252 55.000 0.00 0.00 0.00 3.53
826 829 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
827 830 1.209747 GCTACTCCCTCCGTTCCAAAT 59.790 52.381 0.00 0.00 0.00 2.32
828 831 2.355818 GCTACTCCCTCCGTTCCAAATT 60.356 50.000 0.00 0.00 0.00 1.82
829 832 3.118519 GCTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
830 833 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
831 834 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
832 835 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
833 836 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
834 837 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
835 838 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
836 839 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
837 840 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
838 841 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
839 842 2.156117 CGTTCCAAATTACTCGTCGCAA 59.844 45.455 0.00 0.00 0.00 4.85
840 843 3.363182 CGTTCCAAATTACTCGTCGCAAA 60.363 43.478 0.00 0.00 0.00 3.68
841 844 4.529446 GTTCCAAATTACTCGTCGCAAAA 58.471 39.130 0.00 0.00 0.00 2.44
842 845 4.398549 TCCAAATTACTCGTCGCAAAAG 57.601 40.909 0.00 0.00 0.00 2.27
843 846 3.810941 TCCAAATTACTCGTCGCAAAAGT 59.189 39.130 0.00 0.00 0.00 2.66
844 847 3.906008 CCAAATTACTCGTCGCAAAAGTG 59.094 43.478 0.00 0.00 0.00 3.16
845 848 3.806316 AATTACTCGTCGCAAAAGTGG 57.194 42.857 0.00 0.00 0.00 4.00
846 849 2.512485 TTACTCGTCGCAAAAGTGGA 57.488 45.000 0.00 0.00 0.00 4.02
847 850 2.736144 TACTCGTCGCAAAAGTGGAT 57.264 45.000 0.00 0.00 0.00 3.41
848 851 1.148310 ACTCGTCGCAAAAGTGGATG 58.852 50.000 0.00 0.00 0.00 3.51
849 852 1.148310 CTCGTCGCAAAAGTGGATGT 58.852 50.000 0.00 0.00 0.00 3.06
850 853 2.288579 ACTCGTCGCAAAAGTGGATGTA 60.289 45.455 0.00 0.00 0.00 2.29
851 854 2.930040 CTCGTCGCAAAAGTGGATGTAT 59.070 45.455 0.00 0.00 0.00 2.29
852 855 2.927477 TCGTCGCAAAAGTGGATGTATC 59.073 45.455 0.00 0.00 0.00 2.24
853 856 2.930040 CGTCGCAAAAGTGGATGTATCT 59.070 45.455 0.00 0.00 0.00 1.98
854 857 3.242091 CGTCGCAAAAGTGGATGTATCTG 60.242 47.826 0.00 0.00 0.00 2.90
855 858 3.932710 GTCGCAAAAGTGGATGTATCTGA 59.067 43.478 0.00 0.00 0.00 3.27
856 859 4.391830 GTCGCAAAAGTGGATGTATCTGAA 59.608 41.667 0.00 0.00 0.00 3.02
857 860 4.391830 TCGCAAAAGTGGATGTATCTGAAC 59.608 41.667 0.00 0.00 0.00 3.18
858 861 4.393062 CGCAAAAGTGGATGTATCTGAACT 59.607 41.667 0.00 0.00 0.00 3.01
859 862 5.580691 CGCAAAAGTGGATGTATCTGAACTA 59.419 40.000 0.00 0.00 0.00 2.24
860 863 6.092122 CGCAAAAGTGGATGTATCTGAACTAA 59.908 38.462 0.00 0.00 0.00 2.24
861 864 7.360861 CGCAAAAGTGGATGTATCTGAACTAAA 60.361 37.037 0.00 0.00 0.00 1.85
862 865 8.296713 GCAAAAGTGGATGTATCTGAACTAAAA 58.703 33.333 0.00 0.00 0.00 1.52
1190 1553 4.139786 AGCCTATCGAAATCTACGTACCA 58.860 43.478 0.00 0.00 0.00 3.25
1202 1565 9.316730 GAAATCTACGTACCATTTATGTTGGTA 57.683 33.333 7.45 0.00 45.62 3.25
1210 1573 6.388619 ACCATTTATGTTGGTACTTCCTCT 57.611 37.500 0.00 0.00 45.62 3.69
1211 1574 6.180472 ACCATTTATGTTGGTACTTCCTCTG 58.820 40.000 0.00 0.00 45.62 3.35
1212 1575 6.180472 CCATTTATGTTGGTACTTCCTCTGT 58.820 40.000 0.00 0.00 37.07 3.41
1213 1576 7.037873 ACCATTTATGTTGGTACTTCCTCTGTA 60.038 37.037 0.00 0.00 45.62 2.74
1214 1577 7.827236 CCATTTATGTTGGTACTTCCTCTGTAA 59.173 37.037 0.00 0.00 37.07 2.41
1215 1578 9.226606 CATTTATGTTGGTACTTCCTCTGTAAA 57.773 33.333 0.00 0.00 37.07 2.01
1216 1579 8.611654 TTTATGTTGGTACTTCCTCTGTAAAC 57.388 34.615 0.00 0.00 37.07 2.01
1217 1580 5.881923 TGTTGGTACTTCCTCTGTAAACT 57.118 39.130 0.00 0.00 37.07 2.66
1218 1581 6.982160 TGTTGGTACTTCCTCTGTAAACTA 57.018 37.500 0.00 0.00 37.07 2.24
1219 1582 7.364149 TGTTGGTACTTCCTCTGTAAACTAA 57.636 36.000 0.00 0.00 37.07 2.24
1220 1583 7.970102 TGTTGGTACTTCCTCTGTAAACTAAT 58.030 34.615 0.00 0.00 37.07 1.73
1221 1584 9.092338 TGTTGGTACTTCCTCTGTAAACTAATA 57.908 33.333 0.00 0.00 37.07 0.98
1229 1592 9.400638 CTTCCTCTGTAAACTAATATAAGAGCG 57.599 37.037 0.00 0.00 0.00 5.03
1230 1593 8.461249 TCCTCTGTAAACTAATATAAGAGCGT 57.539 34.615 0.00 0.00 0.00 5.07
1231 1594 8.910944 TCCTCTGTAAACTAATATAAGAGCGTT 58.089 33.333 0.00 0.00 0.00 4.84
1232 1595 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
1247 1610 9.953697 ATAAGAGCGTTTAGATCACTAAAGTAG 57.046 33.333 0.00 0.00 45.42 2.57
1248 1611 7.393841 AGAGCGTTTAGATCACTAAAGTAGT 57.606 36.000 0.00 0.00 45.42 2.73
1280 1643 8.862550 AACGTTCTTATATTAGTTTACGGAGG 57.137 34.615 0.00 0.00 32.54 4.30
1281 1644 7.428826 ACGTTCTTATATTAGTTTACGGAGGG 58.571 38.462 13.71 0.00 32.54 4.30
1282 1645 7.285401 ACGTTCTTATATTAGTTTACGGAGGGA 59.715 37.037 13.71 0.00 32.54 4.20
1361 1726 7.097192 TGTGACAGTAGACAAATTGTATCTCC 58.903 38.462 0.00 0.00 0.00 3.71
1711 2085 0.616679 AGCTTTGGCCAATGCAGGAT 60.617 50.000 41.21 26.67 42.01 3.24
2220 2678 1.875514 GTTGAACATGCACAGCTCAGA 59.124 47.619 0.00 0.00 0.00 3.27
2491 2953 6.016610 GGTAAGTCAGGTTGATTGCTTTGTTA 60.017 38.462 0.00 0.00 0.00 2.41
2913 3491 0.907230 AGGTGAGGAGGCAGAAGTCC 60.907 60.000 0.00 0.00 0.00 3.85
3173 3769 2.094286 AGATGTCTTCAGTGGAGAAGCG 60.094 50.000 1.58 0.00 43.64 4.68
3326 3932 4.649674 TGAGTACTCGATTGGGCTAGAAAT 59.350 41.667 17.85 0.00 0.00 2.17
3364 3972 5.105063 GCATTTCCTTATTTGGTCTGCTTC 58.895 41.667 0.00 0.00 0.00 3.86
3439 4053 9.282247 GCACTATTTGTATGTGAATTCAAGAAG 57.718 33.333 10.35 1.07 33.95 2.85
3549 4173 3.569194 TTTTAGAGCATATTGCCCGGA 57.431 42.857 0.73 0.00 46.52 5.14
3551 4175 2.839486 TAGAGCATATTGCCCGGAAG 57.161 50.000 0.73 0.00 46.52 3.46
3566 4190 4.809496 AAGGGGCAGCATCGGCAG 62.809 66.667 0.00 0.00 44.61 4.85
3570 4194 4.783621 GGCAGCATCGGCAGACCA 62.784 66.667 0.00 0.00 44.61 4.02
3571 4195 2.515523 GCAGCATCGGCAGACCAT 60.516 61.111 0.00 0.00 44.61 3.55
3572 4196 2.541120 GCAGCATCGGCAGACCATC 61.541 63.158 0.00 0.00 44.61 3.51
3573 4197 1.145598 CAGCATCGGCAGACCATCT 59.854 57.895 0.00 0.00 44.61 2.90
3574 4198 0.390492 CAGCATCGGCAGACCATCTA 59.610 55.000 0.00 0.00 44.61 1.98
3575 4199 1.001746 CAGCATCGGCAGACCATCTAT 59.998 52.381 0.00 0.00 44.61 1.98
3576 4200 2.232208 CAGCATCGGCAGACCATCTATA 59.768 50.000 0.00 0.00 44.61 1.31
3577 4201 3.102972 AGCATCGGCAGACCATCTATAT 58.897 45.455 0.00 0.00 44.61 0.86
3578 4202 4.098501 CAGCATCGGCAGACCATCTATATA 59.901 45.833 0.00 0.00 44.61 0.86
3579 4203 4.898265 AGCATCGGCAGACCATCTATATAT 59.102 41.667 0.00 0.00 44.61 0.86
3580 4204 6.015940 CAGCATCGGCAGACCATCTATATATA 60.016 42.308 0.00 0.00 44.61 0.86
3581 4205 6.723515 AGCATCGGCAGACCATCTATATATAT 59.276 38.462 0.00 0.00 44.61 0.86
3582 4206 7.032580 GCATCGGCAGACCATCTATATATATC 58.967 42.308 0.00 0.00 40.72 1.63
3583 4207 7.309438 GCATCGGCAGACCATCTATATATATCA 60.309 40.741 0.00 0.00 40.72 2.15
3584 4208 8.579863 CATCGGCAGACCATCTATATATATCAA 58.420 37.037 0.00 0.00 34.57 2.57
3585 4209 8.533569 TCGGCAGACCATCTATATATATCAAA 57.466 34.615 0.00 0.00 34.57 2.69
3586 4210 8.414003 TCGGCAGACCATCTATATATATCAAAC 58.586 37.037 0.00 0.00 34.57 2.93
3587 4211 8.417106 CGGCAGACCATCTATATATATCAAACT 58.583 37.037 0.00 0.00 34.57 2.66
3700 4324 3.055819 GTCTCTCCTGCTTGGTGATAACA 60.056 47.826 2.54 0.00 37.65 2.41
3701 4325 3.055819 TCTCTCCTGCTTGGTGATAACAC 60.056 47.826 0.00 0.00 45.27 3.32
3713 4337 2.603560 GTGATAACACAGCGTCCTTAGC 59.396 50.000 0.00 0.00 45.32 3.09
3714 4338 2.232696 TGATAACACAGCGTCCTTAGCA 59.767 45.455 0.00 0.00 37.01 3.49
3715 4339 3.118775 TGATAACACAGCGTCCTTAGCAT 60.119 43.478 0.00 0.00 37.01 3.79
3716 4340 2.185004 AACACAGCGTCCTTAGCATT 57.815 45.000 0.00 0.00 37.01 3.56
3717 4341 1.726853 ACACAGCGTCCTTAGCATTC 58.273 50.000 0.00 0.00 37.01 2.67
3718 4342 0.647410 CACAGCGTCCTTAGCATTCG 59.353 55.000 0.00 0.00 37.01 3.34
3719 4343 0.530744 ACAGCGTCCTTAGCATTCGA 59.469 50.000 0.00 0.00 37.01 3.71
3720 4344 0.924090 CAGCGTCCTTAGCATTCGAC 59.076 55.000 0.00 0.00 37.01 4.20
3801 4425 4.124351 CTTGGCCATGGCGTGCTG 62.124 66.667 29.90 14.07 43.06 4.41
3802 4426 4.657408 TTGGCCATGGCGTGCTGA 62.657 61.111 29.90 9.22 43.06 4.26
3803 4427 4.657408 TGGCCATGGCGTGCTGAA 62.657 61.111 29.90 6.78 43.06 3.02
3804 4428 3.142838 GGCCATGGCGTGCTGAAT 61.143 61.111 29.90 0.00 43.06 2.57
3805 4429 2.410469 GCCATGGCGTGCTGAATC 59.590 61.111 23.48 0.00 0.00 2.52
3806 4430 2.711311 CCATGGCGTGCTGAATCG 59.289 61.111 0.00 0.00 0.00 3.34
3809 4433 1.146930 ATGGCGTGCTGAATCGGAT 59.853 52.632 0.00 0.00 0.00 4.18
3826 4450 2.096069 CGGATTCGGATAATTGCTGCAG 60.096 50.000 10.11 10.11 0.00 4.41
3947 4571 5.705905 TCAGTGACAACGATAAGAAGAGAGA 59.294 40.000 0.00 0.00 0.00 3.10
4105 4768 0.605319 TTGTAAACTGGCGCCTCTGG 60.605 55.000 29.70 16.87 0.00 3.86
4144 4807 4.778143 ATCTGGGCGCCCGTTGAC 62.778 66.667 39.00 16.26 39.42 3.18
4229 4892 6.506500 ACATTTGTCTTGAGAATGGATGAC 57.493 37.500 9.77 0.00 35.60 3.06
4230 4893 6.243900 ACATTTGTCTTGAGAATGGATGACT 58.756 36.000 9.77 0.00 35.60 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.040870 CACGTCGCTATCATCTCGCT 60.041 55.000 0.00 0.00 0.00 4.93
1 2 1.601147 GCACGTCGCTATCATCTCGC 61.601 60.000 0.00 0.00 37.77 5.03
2 3 0.999228 GGCACGTCGCTATCATCTCG 60.999 60.000 9.31 0.00 41.91 4.04
3 4 0.312416 AGGCACGTCGCTATCATCTC 59.688 55.000 9.31 0.00 41.91 2.75
4 5 0.312416 GAGGCACGTCGCTATCATCT 59.688 55.000 9.31 0.00 41.91 2.90
5 6 0.664767 GGAGGCACGTCGCTATCATC 60.665 60.000 9.31 2.41 41.91 2.92
6 7 1.109920 AGGAGGCACGTCGCTATCAT 61.110 55.000 9.31 4.34 41.91 2.45
7 8 1.753078 AGGAGGCACGTCGCTATCA 60.753 57.895 9.31 0.00 41.91 2.15
8 9 1.299468 CAGGAGGCACGTCGCTATC 60.299 63.158 9.31 7.99 41.91 2.08
9 10 2.786495 CCAGGAGGCACGTCGCTAT 61.786 63.158 9.31 0.49 41.91 2.97
10 11 3.449227 CCAGGAGGCACGTCGCTA 61.449 66.667 9.31 0.00 41.91 4.26
20 21 4.069232 TTCGCTCGTGCCAGGAGG 62.069 66.667 15.56 6.56 35.36 4.30
21 22 2.811317 GTTCGCTCGTGCCAGGAG 60.811 66.667 10.00 10.00 35.36 3.69
22 23 4.717629 CGTTCGCTCGTGCCAGGA 62.718 66.667 3.52 0.00 35.36 3.86
23 24 4.717629 TCGTTCGCTCGTGCCAGG 62.718 66.667 3.52 0.00 35.36 4.45
24 25 3.175240 CTCGTTCGCTCGTGCCAG 61.175 66.667 3.52 0.00 35.36 4.85
25 26 3.610791 CTCTCGTTCGCTCGTGCCA 62.611 63.158 3.52 0.00 35.36 4.92
26 27 2.876645 CTCTCGTTCGCTCGTGCC 60.877 66.667 3.52 0.00 35.36 5.01
27 28 1.865622 CTCTCTCGTTCGCTCGTGC 60.866 63.158 0.00 0.00 0.00 5.34
28 29 0.519586 GTCTCTCTCGTTCGCTCGTG 60.520 60.000 0.00 0.00 0.00 4.35
29 30 1.789116 GTCTCTCTCGTTCGCTCGT 59.211 57.895 0.00 0.00 0.00 4.18
30 31 1.296288 CGTCTCTCTCGTTCGCTCG 60.296 63.158 0.00 0.00 0.00 5.03
31 32 0.519586 CACGTCTCTCTCGTTCGCTC 60.520 60.000 0.00 0.00 39.55 5.03
32 33 1.498166 CACGTCTCTCTCGTTCGCT 59.502 57.895 0.00 0.00 39.55 4.93
33 34 2.147133 GCACGTCTCTCTCGTTCGC 61.147 63.158 0.00 0.00 39.55 4.70
34 35 1.512310 GGCACGTCTCTCTCGTTCG 60.512 63.158 0.00 0.00 39.55 3.95
35 36 0.179184 GAGGCACGTCTCTCTCGTTC 60.179 60.000 7.26 0.00 39.55 3.95
36 37 1.587933 GGAGGCACGTCTCTCTCGTT 61.588 60.000 12.61 0.00 39.55 3.85
37 38 2.041686 GGAGGCACGTCTCTCTCGT 61.042 63.158 12.61 0.00 42.33 4.18
38 39 1.711060 GAGGAGGCACGTCTCTCTCG 61.711 65.000 12.61 0.00 34.39 4.04
39 40 1.381165 GGAGGAGGCACGTCTCTCTC 61.381 65.000 12.61 11.84 34.02 3.20
40 41 1.379309 GGAGGAGGCACGTCTCTCT 60.379 63.158 12.61 5.24 34.02 3.10
41 42 1.679305 TGGAGGAGGCACGTCTCTC 60.679 63.158 4.71 5.37 34.02 3.20
42 43 1.979693 GTGGAGGAGGCACGTCTCT 60.980 63.158 4.71 0.00 34.02 3.10
43 44 2.574399 GTGGAGGAGGCACGTCTC 59.426 66.667 4.71 0.00 34.32 3.36
44 45 3.374402 CGTGGAGGAGGCACGTCT 61.374 66.667 0.00 0.00 37.53 4.18
45 46 3.343788 CTCGTGGAGGAGGCACGTC 62.344 68.421 0.00 0.00 42.24 4.34
46 47 3.374402 CTCGTGGAGGAGGCACGT 61.374 66.667 0.00 0.00 42.24 4.49
47 48 4.803426 GCTCGTGGAGGAGGCACG 62.803 72.222 0.00 0.00 42.87 5.34
48 49 4.803426 CGCTCGTGGAGGAGGCAC 62.803 72.222 0.00 0.00 34.56 5.01
51 52 4.803426 GTGCGCTCGTGGAGGAGG 62.803 72.222 9.73 0.00 34.56 4.30
65 66 2.221799 AAAAATCTTACGCGTCGTGC 57.778 45.000 18.63 0.00 41.39 5.34
84 85 4.894784 ACGTGATCTCTTGCCTCTAAAAA 58.105 39.130 0.00 0.00 0.00 1.94
85 86 4.537135 ACGTGATCTCTTGCCTCTAAAA 57.463 40.909 0.00 0.00 0.00 1.52
86 87 4.438336 CGTACGTGATCTCTTGCCTCTAAA 60.438 45.833 7.22 0.00 0.00 1.85
87 88 3.064958 CGTACGTGATCTCTTGCCTCTAA 59.935 47.826 7.22 0.00 0.00 2.10
88 89 2.612672 CGTACGTGATCTCTTGCCTCTA 59.387 50.000 7.22 0.00 0.00 2.43
89 90 1.402259 CGTACGTGATCTCTTGCCTCT 59.598 52.381 7.22 0.00 0.00 3.69
90 91 1.132643 ACGTACGTGATCTCTTGCCTC 59.867 52.381 22.14 0.00 0.00 4.70
91 92 1.174783 ACGTACGTGATCTCTTGCCT 58.825 50.000 22.14 0.00 0.00 4.75
92 93 2.717530 CTACGTACGTGATCTCTTGCC 58.282 52.381 30.25 0.00 0.00 4.52
93 94 2.110226 GCTACGTACGTGATCTCTTGC 58.890 52.381 30.25 15.79 0.00 4.01
94 95 3.400505 TGCTACGTACGTGATCTCTTG 57.599 47.619 30.25 10.67 0.00 3.02
95 96 3.792459 GCATGCTACGTACGTGATCTCTT 60.792 47.826 30.25 9.73 0.00 2.85
96 97 2.287069 GCATGCTACGTACGTGATCTCT 60.287 50.000 30.25 7.60 0.00 3.10
97 98 2.044860 GCATGCTACGTACGTGATCTC 58.955 52.381 30.25 14.15 0.00 2.75
98 99 1.269102 GGCATGCTACGTACGTGATCT 60.269 52.381 30.25 10.09 0.00 2.75
99 100 1.129326 GGCATGCTACGTACGTGATC 58.871 55.000 30.25 18.11 0.00 2.92
100 101 0.744874 AGGCATGCTACGTACGTGAT 59.255 50.000 30.25 16.02 0.00 3.06
101 102 0.099968 GAGGCATGCTACGTACGTGA 59.900 55.000 30.25 14.43 0.00 4.35
102 103 1.200474 CGAGGCATGCTACGTACGTG 61.200 60.000 30.25 19.92 0.00 4.49
103 104 1.063649 CGAGGCATGCTACGTACGT 59.936 57.895 25.98 25.98 0.00 3.57
104 105 0.040336 ATCGAGGCATGCTACGTACG 60.040 55.000 25.94 15.01 0.00 3.67
105 106 2.135664 AATCGAGGCATGCTACGTAC 57.864 50.000 25.94 8.67 0.00 3.67
106 107 2.159156 ACAAATCGAGGCATGCTACGTA 60.159 45.455 25.94 17.52 0.00 3.57
107 108 1.290203 CAAATCGAGGCATGCTACGT 58.710 50.000 25.94 16.06 0.00 3.57
108 109 1.290203 ACAAATCGAGGCATGCTACG 58.710 50.000 18.92 21.54 0.00 3.51
109 110 3.871594 AGTAACAAATCGAGGCATGCTAC 59.128 43.478 18.92 10.85 0.00 3.58
110 111 4.137116 AGTAACAAATCGAGGCATGCTA 57.863 40.909 18.92 1.16 0.00 3.49
111 112 2.991250 AGTAACAAATCGAGGCATGCT 58.009 42.857 18.92 3.20 0.00 3.79
112 113 3.375299 AGAAGTAACAAATCGAGGCATGC 59.625 43.478 9.90 9.90 0.00 4.06
113 114 5.551760 AAGAAGTAACAAATCGAGGCATG 57.448 39.130 0.00 0.00 0.00 4.06
114 115 6.575162 AAAAGAAGTAACAAATCGAGGCAT 57.425 33.333 0.00 0.00 0.00 4.40
115 116 6.385649 AAAAAGAAGTAACAAATCGAGGCA 57.614 33.333 0.00 0.00 0.00 4.75
136 137 5.642063 AGATCGAGGCGTTTTCTCATAAAAA 59.358 36.000 0.00 0.00 0.00 1.94
137 138 5.063438 CAGATCGAGGCGTTTTCTCATAAAA 59.937 40.000 0.00 0.00 0.00 1.52
138 139 4.566759 CAGATCGAGGCGTTTTCTCATAAA 59.433 41.667 0.00 0.00 0.00 1.40
139 140 4.112634 CAGATCGAGGCGTTTTCTCATAA 58.887 43.478 0.00 0.00 0.00 1.90
140 141 3.706698 CAGATCGAGGCGTTTTCTCATA 58.293 45.455 0.00 0.00 0.00 2.15
141 142 2.544685 CAGATCGAGGCGTTTTCTCAT 58.455 47.619 0.00 0.00 0.00 2.90
142 143 1.996292 CAGATCGAGGCGTTTTCTCA 58.004 50.000 0.00 0.00 0.00 3.27
143 144 0.647925 GCAGATCGAGGCGTTTTCTC 59.352 55.000 0.00 0.00 0.00 2.87
144 145 0.741221 GGCAGATCGAGGCGTTTTCT 60.741 55.000 0.00 0.00 0.00 2.52
145 146 0.741221 AGGCAGATCGAGGCGTTTTC 60.741 55.000 8.65 0.00 36.55 2.29
146 147 0.741221 GAGGCAGATCGAGGCGTTTT 60.741 55.000 8.65 0.00 36.55 2.43
147 148 1.153549 GAGGCAGATCGAGGCGTTT 60.154 57.895 8.65 0.00 36.55 3.60
148 149 2.010582 GAGAGGCAGATCGAGGCGTT 62.011 60.000 8.65 2.56 36.55 4.84
149 150 2.441164 AGAGGCAGATCGAGGCGT 60.441 61.111 8.65 5.72 36.55 5.68
150 151 2.334653 GAGAGGCAGATCGAGGCG 59.665 66.667 8.65 0.00 36.55 5.52
151 152 2.334653 CGAGAGGCAGATCGAGGC 59.665 66.667 6.65 6.65 41.40 4.70
152 153 1.358402 CACGAGAGGCAGATCGAGG 59.642 63.158 12.02 1.88 41.40 4.63
153 154 1.299014 GCACGAGAGGCAGATCGAG 60.299 63.158 12.02 6.15 41.40 4.04
154 155 1.750780 AGCACGAGAGGCAGATCGA 60.751 57.895 12.02 0.00 41.40 3.59
155 156 1.588403 CAGCACGAGAGGCAGATCG 60.588 63.158 0.00 4.75 44.36 3.69
156 157 1.227205 CCAGCACGAGAGGCAGATC 60.227 63.158 0.00 0.00 0.00 2.75
157 158 2.898738 CCAGCACGAGAGGCAGAT 59.101 61.111 0.00 0.00 0.00 2.90
161 162 4.129737 TACGCCAGCACGAGAGGC 62.130 66.667 6.67 6.67 44.89 4.70
162 163 2.202623 GTACGCCAGCACGAGAGG 60.203 66.667 0.00 0.00 36.70 3.69
163 164 0.450583 TAAGTACGCCAGCACGAGAG 59.549 55.000 0.00 0.00 36.70 3.20
164 165 0.169672 GTAAGTACGCCAGCACGAGA 59.830 55.000 0.00 0.00 36.70 4.04
165 166 0.801067 GGTAAGTACGCCAGCACGAG 60.801 60.000 0.00 0.00 36.70 4.18
166 167 1.213537 GGTAAGTACGCCAGCACGA 59.786 57.895 0.00 0.00 36.70 4.35
167 168 2.156446 CGGTAAGTACGCCAGCACG 61.156 63.158 5.32 0.00 39.50 5.34
168 169 1.808390 CCGGTAAGTACGCCAGCAC 60.808 63.158 0.00 0.00 0.00 4.40
169 170 2.574929 CCGGTAAGTACGCCAGCA 59.425 61.111 0.00 0.00 0.00 4.41
170 171 2.202837 CCCGGTAAGTACGCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
171 172 2.202837 GCCCGGTAAGTACGCCAG 60.203 66.667 0.00 0.00 0.00 4.85
172 173 3.773404 GGCCCGGTAAGTACGCCA 61.773 66.667 10.38 0.00 39.50 5.69
173 174 3.728279 CTGGCCCGGTAAGTACGCC 62.728 68.421 8.54 8.54 40.16 5.68
174 175 2.202837 CTGGCCCGGTAAGTACGC 60.203 66.667 0.00 0.00 0.00 4.42
175 176 2.202837 GCTGGCCCGGTAAGTACG 60.203 66.667 0.00 0.00 0.00 3.67
176 177 2.202837 CGCTGGCCCGGTAAGTAC 60.203 66.667 0.00 0.00 0.00 2.73
177 178 2.681064 ACGCTGGCCCGGTAAGTA 60.681 61.111 0.00 0.00 0.00 2.24
178 179 4.388499 CACGCTGGCCCGGTAAGT 62.388 66.667 0.00 0.00 0.00 2.24
193 194 4.012895 CAGTGAACGTGCCGGCAC 62.013 66.667 43.07 43.07 43.01 5.01
194 195 4.228567 TCAGTGAACGTGCCGGCA 62.229 61.111 29.03 29.03 0.00 5.69
195 196 3.414700 CTCAGTGAACGTGCCGGC 61.415 66.667 22.73 22.73 0.00 6.13
196 197 2.738521 CCTCAGTGAACGTGCCGG 60.739 66.667 0.00 0.00 0.00 6.13
197 198 2.738521 CCCTCAGTGAACGTGCCG 60.739 66.667 0.00 0.00 0.00 5.69
198 199 2.358737 CCCCTCAGTGAACGTGCC 60.359 66.667 0.00 0.00 0.00 5.01
199 200 3.050275 GCCCCTCAGTGAACGTGC 61.050 66.667 0.00 0.00 0.00 5.34
200 201 2.358737 GGCCCCTCAGTGAACGTG 60.359 66.667 0.00 0.00 0.00 4.49
201 202 4.003788 CGGCCCCTCAGTGAACGT 62.004 66.667 0.00 0.00 0.00 3.99
202 203 4.003788 ACGGCCCCTCAGTGAACG 62.004 66.667 0.00 0.00 0.00 3.95
203 204 2.358737 CACGGCCCCTCAGTGAAC 60.359 66.667 0.00 0.00 42.39 3.18
204 205 4.329545 GCACGGCCCCTCAGTGAA 62.330 66.667 11.43 0.00 42.39 3.18
206 207 4.335647 AAGCACGGCCCCTCAGTG 62.336 66.667 0.00 0.00 42.62 3.66
207 208 4.335647 CAAGCACGGCCCCTCAGT 62.336 66.667 0.00 0.00 0.00 3.41
221 222 3.612247 CTGACCTCCACGGCCCAAG 62.612 68.421 0.00 0.00 35.61 3.61
222 223 3.636231 CTGACCTCCACGGCCCAA 61.636 66.667 0.00 0.00 35.61 4.12
229 230 4.664677 ACGCGTGCTGACCTCCAC 62.665 66.667 12.93 0.00 0.00 4.02
230 231 4.662961 CACGCGTGCTGACCTCCA 62.663 66.667 28.16 0.00 0.00 3.86
256 257 1.227853 CTTAGTACATGGGCCGGGC 60.228 63.158 22.00 22.00 0.00 6.13
257 258 1.227853 GCTTAGTACATGGGCCGGG 60.228 63.158 2.18 0.00 0.00 5.73
258 259 1.594293 CGCTTAGTACATGGGCCGG 60.594 63.158 0.00 0.00 0.00 6.13
259 260 1.143183 ACGCTTAGTACATGGGCCG 59.857 57.895 0.00 0.00 0.00 6.13
260 261 1.436983 GCACGCTTAGTACATGGGCC 61.437 60.000 0.00 0.00 0.00 5.80
261 262 0.462047 AGCACGCTTAGTACATGGGC 60.462 55.000 0.00 0.00 0.00 5.36
262 263 1.665679 CAAGCACGCTTAGTACATGGG 59.334 52.381 3.53 0.00 34.50 4.00
263 264 1.665679 CCAAGCACGCTTAGTACATGG 59.334 52.381 3.53 0.00 34.50 3.66
264 265 2.346803 ACCAAGCACGCTTAGTACATG 58.653 47.619 3.53 0.00 34.50 3.21
265 266 2.618053 GACCAAGCACGCTTAGTACAT 58.382 47.619 3.53 0.00 34.50 2.29
266 267 1.667756 CGACCAAGCACGCTTAGTACA 60.668 52.381 3.53 0.00 34.50 2.90
267 268 0.989890 CGACCAAGCACGCTTAGTAC 59.010 55.000 3.53 0.00 34.50 2.73
268 269 0.108992 CCGACCAAGCACGCTTAGTA 60.109 55.000 3.53 0.00 34.50 1.82
269 270 1.374252 CCGACCAAGCACGCTTAGT 60.374 57.895 3.53 2.93 34.50 2.24
270 271 2.100631 CCCGACCAAGCACGCTTAG 61.101 63.158 3.53 0.00 34.50 2.18
271 272 2.047655 CCCGACCAAGCACGCTTA 60.048 61.111 3.53 0.00 34.50 3.09
294 295 1.602323 TTAAACAGGCCAGGCACGG 60.602 57.895 15.19 6.14 0.00 4.94
295 296 0.889186 AGTTAAACAGGCCAGGCACG 60.889 55.000 15.19 5.69 0.00 5.34
296 297 1.328279 AAGTTAAACAGGCCAGGCAC 58.672 50.000 15.19 2.38 0.00 5.01
297 298 2.554344 CCTAAGTTAAACAGGCCAGGCA 60.554 50.000 15.19 0.00 0.00 4.75
298 299 2.092323 CCTAAGTTAAACAGGCCAGGC 58.908 52.381 5.01 1.26 0.00 4.85
304 305 1.746470 CCCGGCCTAAGTTAAACAGG 58.254 55.000 0.00 0.00 0.00 4.00
305 306 1.092348 GCCCGGCCTAAGTTAAACAG 58.908 55.000 0.00 0.00 0.00 3.16
306 307 0.322726 GGCCCGGCCTAAGTTAAACA 60.323 55.000 22.31 0.00 46.69 2.83
307 308 2.485677 GGCCCGGCCTAAGTTAAAC 58.514 57.895 22.31 0.00 46.69 2.01
331 332 3.440415 GGCTAAACAGGCCGGCAC 61.440 66.667 30.85 17.99 40.19 5.01
339 340 1.336240 GCTGCAAACCTGGCTAAACAG 60.336 52.381 0.00 0.00 38.21 3.16
340 341 0.673437 GCTGCAAACCTGGCTAAACA 59.327 50.000 0.00 0.00 0.00 2.83
341 342 0.387239 CGCTGCAAACCTGGCTAAAC 60.387 55.000 0.00 0.00 0.00 2.01
342 343 0.536233 TCGCTGCAAACCTGGCTAAA 60.536 50.000 0.00 0.00 0.00 1.85
343 344 0.955428 CTCGCTGCAAACCTGGCTAA 60.955 55.000 0.00 0.00 0.00 3.09
344 345 1.375908 CTCGCTGCAAACCTGGCTA 60.376 57.895 0.00 0.00 0.00 3.93
345 346 2.670934 CTCGCTGCAAACCTGGCT 60.671 61.111 0.00 0.00 0.00 4.75
346 347 3.741476 CCTCGCTGCAAACCTGGC 61.741 66.667 0.00 0.00 0.00 4.85
347 348 1.172180 TTTCCTCGCTGCAAACCTGG 61.172 55.000 0.00 0.00 0.00 4.45
348 349 0.667993 TTTTCCTCGCTGCAAACCTG 59.332 50.000 0.00 0.00 0.00 4.00
349 350 1.541588 GATTTTCCTCGCTGCAAACCT 59.458 47.619 0.00 0.00 0.00 3.50
350 351 1.402852 GGATTTTCCTCGCTGCAAACC 60.403 52.381 0.00 0.00 32.53 3.27
351 352 1.541588 AGGATTTTCCTCGCTGCAAAC 59.458 47.619 0.00 0.00 45.66 2.93
352 353 1.909700 AGGATTTTCCTCGCTGCAAA 58.090 45.000 0.00 0.00 45.66 3.68
353 354 3.650647 AGGATTTTCCTCGCTGCAA 57.349 47.368 0.00 0.00 45.66 4.08
375 376 1.619669 AGTGGATGGGAGGGGTTCC 60.620 63.158 0.00 0.00 46.00 3.62
376 377 1.915983 GAGTGGATGGGAGGGGTTC 59.084 63.158 0.00 0.00 0.00 3.62
377 378 1.995626 CGAGTGGATGGGAGGGGTT 60.996 63.158 0.00 0.00 0.00 4.11
378 379 2.365635 CGAGTGGATGGGAGGGGT 60.366 66.667 0.00 0.00 0.00 4.95
379 380 3.866582 GCGAGTGGATGGGAGGGG 61.867 72.222 0.00 0.00 0.00 4.79
380 381 4.227134 CGCGAGTGGATGGGAGGG 62.227 72.222 0.00 0.00 0.00 4.30
381 382 4.899239 GCGCGAGTGGATGGGAGG 62.899 72.222 12.10 0.00 0.00 4.30
382 383 4.899239 GGCGCGAGTGGATGGGAG 62.899 72.222 12.10 0.00 0.00 4.30
384 385 4.776322 TTGGCGCGAGTGGATGGG 62.776 66.667 12.10 0.00 0.00 4.00
385 386 2.745884 TTTGGCGCGAGTGGATGG 60.746 61.111 12.10 0.00 0.00 3.51
386 387 2.480555 GTTTGGCGCGAGTGGATG 59.519 61.111 12.10 0.00 0.00 3.51
387 388 3.118454 CGTTTGGCGCGAGTGGAT 61.118 61.111 12.10 0.00 0.00 3.41
388 389 4.287781 TCGTTTGGCGCGAGTGGA 62.288 61.111 12.10 0.00 41.07 4.02
398 399 1.848886 AACCCTAGGGCCTCGTTTGG 61.849 60.000 28.88 7.28 39.32 3.28
399 400 0.392595 GAACCCTAGGGCCTCGTTTG 60.393 60.000 28.88 0.54 39.32 2.93
400 401 1.559965 GGAACCCTAGGGCCTCGTTT 61.560 60.000 28.88 13.46 39.32 3.60
401 402 1.993948 GGAACCCTAGGGCCTCGTT 60.994 63.158 28.88 14.26 39.32 3.85
402 403 2.365237 GGAACCCTAGGGCCTCGT 60.365 66.667 28.88 4.62 39.32 4.18
403 404 2.365105 TGGAACCCTAGGGCCTCG 60.365 66.667 28.88 2.70 39.32 4.63
404 405 3.321445 GTGGAACCCTAGGGCCTC 58.679 66.667 28.88 22.94 39.32 4.70
415 416 2.230660 CCCTTTGTTCTCTGGTGGAAC 58.769 52.381 0.00 0.00 42.17 3.62
416 417 1.144913 CCCCTTTGTTCTCTGGTGGAA 59.855 52.381 0.00 0.00 0.00 3.53
417 418 0.771127 CCCCTTTGTTCTCTGGTGGA 59.229 55.000 0.00 0.00 0.00 4.02
418 419 0.771127 TCCCCTTTGTTCTCTGGTGG 59.229 55.000 0.00 0.00 0.00 4.61
419 420 2.716217 GATCCCCTTTGTTCTCTGGTG 58.284 52.381 0.00 0.00 0.00 4.17
420 421 1.279271 CGATCCCCTTTGTTCTCTGGT 59.721 52.381 0.00 0.00 0.00 4.00
421 422 1.407437 CCGATCCCCTTTGTTCTCTGG 60.407 57.143 0.00 0.00 0.00 3.86
422 423 1.407437 CCCGATCCCCTTTGTTCTCTG 60.407 57.143 0.00 0.00 0.00 3.35
423 424 0.912486 CCCGATCCCCTTTGTTCTCT 59.088 55.000 0.00 0.00 0.00 3.10
424 425 0.107165 CCCCGATCCCCTTTGTTCTC 60.107 60.000 0.00 0.00 0.00 2.87
425 426 1.571773 CCCCCGATCCCCTTTGTTCT 61.572 60.000 0.00 0.00 0.00 3.01
426 427 1.076995 CCCCCGATCCCCTTTGTTC 60.077 63.158 0.00 0.00 0.00 3.18
427 428 1.855451 ACCCCCGATCCCCTTTGTT 60.855 57.895 0.00 0.00 0.00 2.83
428 429 2.204244 ACCCCCGATCCCCTTTGT 60.204 61.111 0.00 0.00 0.00 2.83
429 430 2.595655 GACCCCCGATCCCCTTTG 59.404 66.667 0.00 0.00 0.00 2.77
430 431 2.694992 GGACCCCCGATCCCCTTT 60.695 66.667 0.00 0.00 0.00 3.11
431 432 3.362946 ATGGACCCCCGATCCCCTT 62.363 63.158 0.00 0.00 35.12 3.95
432 433 3.791076 ATGGACCCCCGATCCCCT 61.791 66.667 0.00 0.00 35.12 4.79
433 434 3.249961 GATGGACCCCCGATCCCC 61.250 72.222 0.00 0.00 35.12 4.81
434 435 1.769716 GAAGATGGACCCCCGATCCC 61.770 65.000 0.00 0.00 35.12 3.85
435 436 1.755384 GAAGATGGACCCCCGATCC 59.245 63.158 0.00 0.00 36.70 3.36
436 437 1.755384 GGAAGATGGACCCCCGATC 59.245 63.158 0.00 0.00 34.29 3.69
437 438 1.770518 GGGAAGATGGACCCCCGAT 60.771 63.158 0.00 0.00 40.19 4.18
438 439 2.366435 GGGAAGATGGACCCCCGA 60.366 66.667 0.00 0.00 40.19 5.14
442 443 1.004891 AGAGGGGGAAGATGGACCC 59.995 63.158 0.00 0.00 44.89 4.46
443 444 1.403687 CGAGAGGGGGAAGATGGACC 61.404 65.000 0.00 0.00 0.00 4.46
444 445 2.034048 GCGAGAGGGGGAAGATGGAC 62.034 65.000 0.00 0.00 0.00 4.02
445 446 1.762460 GCGAGAGGGGGAAGATGGA 60.762 63.158 0.00 0.00 0.00 3.41
501 502 1.354506 CCTATTCGCAAGCAGCAGC 59.645 57.895 0.00 0.00 46.13 5.25
555 556 4.626042 CTCTTACTGATTCGATTGGGGAG 58.374 47.826 0.00 0.00 0.00 4.30
637 638 1.202110 CGCTTGATTGCTTCGATTGCT 60.202 47.619 11.32 0.00 0.00 3.91
715 718 2.813754 CGGAAAGGACTGCTTTGATTCA 59.186 45.455 0.00 0.00 0.00 2.57
811 814 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
812 815 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
813 816 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
814 817 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
816 819 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
817 820 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
819 822 3.799137 TTGCGACGAGTAATTTGGAAC 57.201 42.857 0.00 0.00 0.00 3.62
821 824 3.810941 ACTTTTGCGACGAGTAATTTGGA 59.189 39.130 0.00 0.00 0.00 3.53
822 825 3.906008 CACTTTTGCGACGAGTAATTTGG 59.094 43.478 0.00 0.00 0.00 3.28
823 826 3.906008 CCACTTTTGCGACGAGTAATTTG 59.094 43.478 0.00 0.00 0.00 2.32
824 827 3.810941 TCCACTTTTGCGACGAGTAATTT 59.189 39.130 0.00 0.00 0.00 1.82
825 828 3.395639 TCCACTTTTGCGACGAGTAATT 58.604 40.909 0.00 0.00 0.00 1.40
826 829 3.034721 TCCACTTTTGCGACGAGTAAT 57.965 42.857 0.00 0.00 0.00 1.89
827 830 2.512485 TCCACTTTTGCGACGAGTAA 57.488 45.000 0.00 0.00 0.00 2.24
828 831 2.288579 ACATCCACTTTTGCGACGAGTA 60.289 45.455 0.00 0.00 0.00 2.59
829 832 1.148310 CATCCACTTTTGCGACGAGT 58.852 50.000 0.00 0.00 0.00 4.18
830 833 1.148310 ACATCCACTTTTGCGACGAG 58.852 50.000 0.00 0.00 0.00 4.18
831 834 2.442212 TACATCCACTTTTGCGACGA 57.558 45.000 0.00 0.00 0.00 4.20
832 835 2.930040 AGATACATCCACTTTTGCGACG 59.070 45.455 0.00 0.00 0.00 5.12
833 836 3.932710 TCAGATACATCCACTTTTGCGAC 59.067 43.478 0.00 0.00 0.00 5.19
834 837 4.200838 TCAGATACATCCACTTTTGCGA 57.799 40.909 0.00 0.00 0.00 5.10
835 838 4.393062 AGTTCAGATACATCCACTTTTGCG 59.607 41.667 0.00 0.00 0.00 4.85
836 839 5.886960 AGTTCAGATACATCCACTTTTGC 57.113 39.130 0.00 0.00 0.00 3.68
869 872 9.027129 CGTTCCGAATTACTTGTCATAGAAATA 57.973 33.333 0.00 0.00 0.00 1.40
870 873 7.011109 CCGTTCCGAATTACTTGTCATAGAAAT 59.989 37.037 0.00 0.00 0.00 2.17
871 874 6.311935 CCGTTCCGAATTACTTGTCATAGAAA 59.688 38.462 0.00 0.00 0.00 2.52
872 875 5.808540 CCGTTCCGAATTACTTGTCATAGAA 59.191 40.000 0.00 0.00 0.00 2.10
873 876 5.125900 TCCGTTCCGAATTACTTGTCATAGA 59.874 40.000 0.00 0.00 0.00 1.98
874 877 5.345702 TCCGTTCCGAATTACTTGTCATAG 58.654 41.667 0.00 0.00 0.00 2.23
875 878 5.327616 TCCGTTCCGAATTACTTGTCATA 57.672 39.130 0.00 0.00 0.00 2.15
876 879 4.181578 CTCCGTTCCGAATTACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
877 880 3.581755 CTCCGTTCCGAATTACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
878 881 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
879 882 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
880 883 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
881 884 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
882 885 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
883 886 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
884 887 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
885 888 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
886 889 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
887 890 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
888 891 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
889 892 1.683943 TATGTACTCCCTCCGTTCCG 58.316 55.000 0.00 0.00 0.00 4.30
890 893 8.937207 ATATATATATGTACTCCCTCCGTTCC 57.063 38.462 4.37 0.00 0.00 3.62
891 894 9.796180 AGATATATATATGTACTCCCTCCGTTC 57.204 37.037 10.03 0.00 0.00 3.95
892 895 9.575868 CAGATATATATATGTACTCCCTCCGTT 57.424 37.037 10.03 0.00 0.00 4.44
893 896 8.164733 CCAGATATATATATGTACTCCCTCCGT 58.835 40.741 14.62 0.00 0.00 4.69
894 897 7.121463 GCCAGATATATATATGTACTCCCTCCG 59.879 44.444 14.62 0.00 0.00 4.63
895 898 7.397761 GGCCAGATATATATATGTACTCCCTCC 59.602 44.444 14.62 0.00 0.00 4.30
896 899 8.174085 AGGCCAGATATATATATGTACTCCCTC 58.826 40.741 14.62 0.00 0.00 4.30
897 900 7.952930 CAGGCCAGATATATATATGTACTCCCT 59.047 40.741 14.62 9.48 0.00 4.20
898 901 7.179338 CCAGGCCAGATATATATATGTACTCCC 59.821 44.444 14.62 7.84 0.00 4.30
899 902 7.310113 GCCAGGCCAGATATATATATGTACTCC 60.310 44.444 14.62 10.27 0.00 3.85
900 903 7.575909 CGCCAGGCCAGATATATATATGTACTC 60.576 44.444 14.62 0.00 0.00 2.59
901 904 6.209589 CGCCAGGCCAGATATATATATGTACT 59.790 42.308 14.62 9.83 0.00 2.73
902 905 6.390721 CGCCAGGCCAGATATATATATGTAC 58.609 44.000 14.62 8.05 0.00 2.90
1190 1553 9.227777 GTTTACAGAGGAAGTACCAACATAAAT 57.772 33.333 0.00 0.00 42.04 1.40
1203 1566 9.400638 CGCTCTTATATTAGTTTACAGAGGAAG 57.599 37.037 0.00 0.00 0.00 3.46
1205 1568 8.461249 ACGCTCTTATATTAGTTTACAGAGGA 57.539 34.615 0.00 0.00 0.00 3.71
1206 1569 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
1221 1584 9.953697 CTACTTTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 40.05 1.73
1222 1585 8.954350 ACTACTTTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 40.05 2.10
1223 1586 7.828712 ACTACTTTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 40.05 2.85
1224 1587 7.393841 ACTACTTTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 40.05 4.09
1254 1617 9.305925 CCTCCGTAAACTAATATAAGAACGTTT 57.694 33.333 0.46 0.00 0.00 3.60
1255 1618 7.922811 CCCTCCGTAAACTAATATAAGAACGTT 59.077 37.037 0.00 0.00 0.00 3.99
1256 1619 7.285401 TCCCTCCGTAAACTAATATAAGAACGT 59.715 37.037 0.00 0.00 0.00 3.99
1257 1620 7.651808 TCCCTCCGTAAACTAATATAAGAACG 58.348 38.462 0.00 0.00 0.00 3.95
1258 1621 8.637099 ACTCCCTCCGTAAACTAATATAAGAAC 58.363 37.037 0.00 0.00 0.00 3.01
1259 1622 8.773033 ACTCCCTCCGTAAACTAATATAAGAA 57.227 34.615 0.00 0.00 0.00 2.52
1322 1687 3.181445 ACTGTCACAGGGATGCAACTTTA 60.181 43.478 10.28 0.00 35.51 1.85
1327 1692 2.028112 GTCTACTGTCACAGGGATGCAA 60.028 50.000 10.28 0.00 35.51 4.08
1361 1726 3.885484 AGTGCAAGTTTGATTGTCTCG 57.115 42.857 0.00 0.00 32.56 4.04
1943 2399 5.355350 AGAACTATGAATTCGGCCTTTTCAG 59.645 40.000 14.60 7.19 33.26 3.02
1947 2403 4.636206 GTCAGAACTATGAATTCGGCCTTT 59.364 41.667 0.00 0.00 0.00 3.11
2220 2678 5.527582 CCGGCAATTAACAATACTAAGCTCT 59.472 40.000 0.00 0.00 0.00 4.09
2491 2953 4.202357 TGAGTAGTGAACAAGTGAAGCCAT 60.202 41.667 0.00 0.00 0.00 4.40
2646 3145 3.914426 AACCGTCAATATGAGCTCCTT 57.086 42.857 12.15 0.92 0.00 3.36
2708 3212 4.586421 TCATAGTAGAGCAACCCATCAGAG 59.414 45.833 0.00 0.00 0.00 3.35
2710 3219 4.586421 TCTCATAGTAGAGCAACCCATCAG 59.414 45.833 0.00 0.00 35.59 2.90
2714 3224 3.701542 CTGTCTCATAGTAGAGCAACCCA 59.298 47.826 0.00 0.00 35.59 4.51
2913 3491 3.432326 GGACACCCTTGTTCCTGCTATAG 60.432 52.174 0.00 0.00 35.47 1.31
3173 3769 1.139853 ACTCGATGCCCTTCCTGATTC 59.860 52.381 0.00 0.00 0.00 2.52
3253 3852 4.628074 TGCCACTAACAGTCTTCAGTTAC 58.372 43.478 0.00 0.00 0.00 2.50
3326 3932 3.942748 GGAAATGCGTATTTGGACCACTA 59.057 43.478 16.49 0.00 36.66 2.74
3364 3972 4.970662 ATACAAGGCATTGCAACTACAG 57.029 40.909 11.69 0.00 40.27 2.74
3421 4034 8.620116 TCATCAACTTCTTGAATTCACATACA 57.380 30.769 7.89 0.00 39.90 2.29
3422 4035 9.713740 GATCATCAACTTCTTGAATTCACATAC 57.286 33.333 7.89 0.00 39.90 2.39
3424 4037 7.395206 TGGATCATCAACTTCTTGAATTCACAT 59.605 33.333 7.89 0.00 39.90 3.21
3439 4053 9.788960 GGTCTAAAATTTAACTGGATCATCAAC 57.211 33.333 0.00 0.00 0.00 3.18
3528 4152 3.892284 TCCGGGCAATATGCTCTAAAAA 58.108 40.909 0.00 0.00 43.01 1.94
3532 4156 1.347707 CCTTCCGGGCAATATGCTCTA 59.652 52.381 0.00 0.00 43.01 2.43
3549 4173 4.809496 CTGCCGATGCTGCCCCTT 62.809 66.667 0.00 0.00 38.71 3.95
3555 4179 0.390492 TAGATGGTCTGCCGATGCTG 59.610 55.000 0.00 0.00 38.71 4.41
3557 4181 3.533606 ATATAGATGGTCTGCCGATGC 57.466 47.619 0.00 0.00 37.67 3.91
3558 4182 8.115490 TGATATATATAGATGGTCTGCCGATG 57.885 38.462 0.00 0.00 37.67 3.84
3559 4183 8.712228 TTGATATATATAGATGGTCTGCCGAT 57.288 34.615 0.00 0.00 37.67 4.18
3561 4185 8.417106 AGTTTGATATATATAGATGGTCTGCCG 58.583 37.037 0.00 0.00 37.67 5.69
3605 4229 8.898761 TCCAACGATATACTTTTTGCAACATAT 58.101 29.630 0.00 0.00 0.00 1.78
3606 4230 8.270080 TCCAACGATATACTTTTTGCAACATA 57.730 30.769 0.00 0.00 0.00 2.29
3607 4231 7.151999 TCCAACGATATACTTTTTGCAACAT 57.848 32.000 0.00 0.00 0.00 2.71
3608 4232 6.561737 TCCAACGATATACTTTTTGCAACA 57.438 33.333 0.00 0.00 0.00 3.33
3609 4233 8.372521 CAAATCCAACGATATACTTTTTGCAAC 58.627 33.333 0.00 0.00 0.00 4.17
3610 4234 8.085296 ACAAATCCAACGATATACTTTTTGCAA 58.915 29.630 0.00 0.00 0.00 4.08
3611 4235 7.598278 ACAAATCCAACGATATACTTTTTGCA 58.402 30.769 0.00 0.00 0.00 4.08
3612 4236 9.730420 ATACAAATCCAACGATATACTTTTTGC 57.270 29.630 0.00 0.00 0.00 3.68
3621 4245 8.895737 ACCGTAAAAATACAAATCCAACGATAT 58.104 29.630 0.00 0.00 0.00 1.63
3622 4246 8.176365 CACCGTAAAAATACAAATCCAACGATA 58.824 33.333 0.00 0.00 0.00 2.92
3623 4247 7.024768 CACCGTAAAAATACAAATCCAACGAT 58.975 34.615 0.00 0.00 0.00 3.73
3624 4248 6.204301 TCACCGTAAAAATACAAATCCAACGA 59.796 34.615 0.00 0.00 0.00 3.85
3625 4249 6.303733 GTCACCGTAAAAATACAAATCCAACG 59.696 38.462 0.00 0.00 0.00 4.10
3626 4250 6.583427 GGTCACCGTAAAAATACAAATCCAAC 59.417 38.462 0.00 0.00 0.00 3.77
3627 4251 6.264744 TGGTCACCGTAAAAATACAAATCCAA 59.735 34.615 0.00 0.00 0.00 3.53
3628 4252 5.768662 TGGTCACCGTAAAAATACAAATCCA 59.231 36.000 0.00 0.00 0.00 3.41
3629 4253 6.256912 TGGTCACCGTAAAAATACAAATCC 57.743 37.500 0.00 0.00 0.00 3.01
3630 4254 7.309920 ACATGGTCACCGTAAAAATACAAATC 58.690 34.615 0.00 0.00 0.00 2.17
3644 4268 2.905075 ACACATCATACATGGTCACCG 58.095 47.619 0.00 0.00 0.00 4.94
3672 4296 4.225942 TCACCAAGCAGGAGAGACAATTAT 59.774 41.667 1.83 0.00 41.22 1.28
3700 4324 0.530744 TCGAATGCTAAGGACGCTGT 59.469 50.000 0.00 0.00 0.00 4.40
3701 4325 0.924090 GTCGAATGCTAAGGACGCTG 59.076 55.000 0.00 0.00 0.00 5.18
3702 4326 0.530744 TGTCGAATGCTAAGGACGCT 59.469 50.000 0.00 0.00 32.17 5.07
3703 4327 1.324736 CTTGTCGAATGCTAAGGACGC 59.675 52.381 0.00 0.00 32.17 5.19
3704 4328 2.607187 ACTTGTCGAATGCTAAGGACG 58.393 47.619 0.00 0.00 32.17 4.79
3705 4329 4.995124 TCTACTTGTCGAATGCTAAGGAC 58.005 43.478 0.00 0.00 0.00 3.85
3706 4330 5.854010 ATCTACTTGTCGAATGCTAAGGA 57.146 39.130 0.00 0.00 0.00 3.36
3707 4331 5.277058 GCAATCTACTTGTCGAATGCTAAGG 60.277 44.000 7.72 0.00 37.18 2.69
3708 4332 5.277058 GGCAATCTACTTGTCGAATGCTAAG 60.277 44.000 12.72 0.00 36.55 2.18
3709 4333 4.570772 GGCAATCTACTTGTCGAATGCTAA 59.429 41.667 12.72 0.00 36.55 3.09
3710 4334 4.119862 GGCAATCTACTTGTCGAATGCTA 58.880 43.478 12.72 0.00 36.55 3.49
3711 4335 2.939103 GGCAATCTACTTGTCGAATGCT 59.061 45.455 12.72 0.00 36.55 3.79
3712 4336 2.677836 TGGCAATCTACTTGTCGAATGC 59.322 45.455 6.74 6.74 42.62 3.56
3713 4337 3.935203 AGTGGCAATCTACTTGTCGAATG 59.065 43.478 0.00 0.00 42.62 2.67
3714 4338 3.935203 CAGTGGCAATCTACTTGTCGAAT 59.065 43.478 0.00 0.00 42.62 3.34
3715 4339 3.325870 CAGTGGCAATCTACTTGTCGAA 58.674 45.455 0.00 0.00 42.62 3.71
3716 4340 2.353704 CCAGTGGCAATCTACTTGTCGA 60.354 50.000 0.00 0.00 42.62 4.20
3717 4341 2.002586 CCAGTGGCAATCTACTTGTCG 58.997 52.381 0.00 0.00 42.62 4.35
3801 4425 4.670221 GCAGCAATTATCCGAATCCGATTC 60.670 45.833 10.64 10.64 38.22 2.52
3802 4426 3.189287 GCAGCAATTATCCGAATCCGATT 59.811 43.478 0.00 0.00 38.22 3.34
3803 4427 2.744202 GCAGCAATTATCCGAATCCGAT 59.256 45.455 0.00 0.00 38.22 4.18
3804 4428 2.143122 GCAGCAATTATCCGAATCCGA 58.857 47.619 0.00 0.00 38.22 4.55
3805 4429 1.872952 TGCAGCAATTATCCGAATCCG 59.127 47.619 0.00 0.00 0.00 4.18
3806 4430 2.880890 ACTGCAGCAATTATCCGAATCC 59.119 45.455 15.27 0.00 0.00 3.01
3809 4433 2.677836 GACACTGCAGCAATTATCCGAA 59.322 45.455 15.27 0.00 0.00 4.30
3826 4450 4.694509 ACAGCTGATTCTCTCAAATGACAC 59.305 41.667 23.35 0.00 32.14 3.67
3877 4501 2.154462 CAAGTGAGAACTTGGCCGAAT 58.846 47.619 10.14 0.00 42.34 3.34
3972 4596 4.320953 GTCTGTTGCGCAAAAGCTATTTAC 59.679 41.667 31.47 20.54 38.13 2.01
3976 4600 1.135972 CGTCTGTTGCGCAAAAGCTAT 60.136 47.619 31.47 0.00 38.13 2.97
4011 4635 5.070446 ACAACTCAAGATCGGCAATATCCTA 59.930 40.000 0.00 0.00 0.00 2.94
4024 4648 3.181454 ACGGAAGGTCAACAACTCAAGAT 60.181 43.478 0.00 0.00 0.00 2.40
4027 4651 2.557317 GACGGAAGGTCAACAACTCAA 58.443 47.619 0.00 0.00 45.36 3.02
4105 4768 3.569690 CGGCCCATTTACGGACGC 61.570 66.667 0.00 0.00 46.79 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.