Multiple sequence alignment - TraesCS6A01G146200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G146200 chr6A 100.000 6629 0 0 1 6629 124714038 124720666 0.000000e+00 12242.0
1 TraesCS6A01G146200 chr6D 97.100 3035 66 9 3568 6590 103601935 103604959 0.000000e+00 5097.0
2 TraesCS6A01G146200 chr6D 97.546 1834 30 7 1749 3571 103600023 103601852 0.000000e+00 3123.0
3 TraesCS6A01G146200 chr6D 86.576 961 34 28 523 1451 103598801 103599698 0.000000e+00 972.0
4 TraesCS6A01G146200 chr6D 88.462 494 31 11 5 494 103597911 103598382 2.070000e-159 573.0
5 TraesCS6A01G146200 chr6D 93.168 161 8 3 1440 1598 103599872 103600031 4.000000e-57 233.0
6 TraesCS6A01G146200 chr6B 95.386 2384 70 17 3632 6000 189100082 189102440 0.000000e+00 3757.0
7 TraesCS6A01G146200 chr6B 93.645 1904 82 19 1749 3638 189098070 189099948 0.000000e+00 2809.0
8 TraesCS6A01G146200 chr6B 87.307 1229 58 34 415 1598 189096903 189098078 0.000000e+00 1315.0
9 TraesCS6A01G146200 chr6B 90.379 343 16 7 3 337 189096459 189096792 1.020000e-117 435.0
10 TraesCS6A01G146200 chr4A 97.449 980 23 2 4114 5093 625238762 625237785 0.000000e+00 1670.0
11 TraesCS6A01G146200 chr4A 97.419 155 3 1 1595 1748 494464657 494464811 5.100000e-66 263.0
12 TraesCS6A01G146200 chr4A 100.000 32 0 0 5018 5049 625237781 625237750 7.180000e-05 60.2
13 TraesCS6A01G146200 chr2A 100.000 150 0 0 1599 1748 601827542 601827691 1.820000e-70 278.0
14 TraesCS6A01G146200 chr2A 98.684 152 2 0 1597 1748 758916243 758916394 3.050000e-68 270.0
15 TraesCS6A01G146200 chrUn 98.026 152 3 0 1597 1748 78167675 78167524 1.420000e-66 265.0
16 TraesCS6A01G146200 chr7A 98.013 151 3 0 1598 1748 709897713 709897863 5.100000e-66 263.0
17 TraesCS6A01G146200 chr1A 98.013 151 3 0 1599 1749 381317862 381318012 5.100000e-66 263.0
18 TraesCS6A01G146200 chr5B 98.000 150 3 0 1599 1748 72093874 72093725 1.830000e-65 261.0
19 TraesCS6A01G146200 chr5B 98.000 150 3 0 1599 1748 684937751 684937602 1.830000e-65 261.0
20 TraesCS6A01G146200 chr5B 94.578 166 5 3 1592 1755 381088144 381088307 3.070000e-63 254.0
21 TraesCS6A01G146200 chr7B 100.000 31 0 0 6141 6171 674605826 674605796 2.580000e-04 58.4
22 TraesCS6A01G146200 chr3B 96.875 32 1 0 6140 6171 760484091 760484122 3.000000e-03 54.7
23 TraesCS6A01G146200 chr2B 96.875 32 1 0 6140 6171 447962951 447962920 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G146200 chr6A 124714038 124720666 6628 False 12242.0 12242 100.00000 1 6629 1 chr6A.!!$F1 6628
1 TraesCS6A01G146200 chr6D 103597911 103604959 7048 False 1999.6 5097 92.57040 5 6590 5 chr6D.!!$F1 6585
2 TraesCS6A01G146200 chr6B 189096459 189102440 5981 False 2079.0 3757 91.67925 3 6000 4 chr6B.!!$F1 5997
3 TraesCS6A01G146200 chr4A 625237750 625238762 1012 True 865.1 1670 98.72450 4114 5093 2 chr4A.!!$R1 979

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.107066 TGCCGTGCTGATTGGATCAT 60.107 50.000 0.00 0.0 38.85 2.45 F
1170 1678 0.038744 CCAACATGCACCCTCTTCCT 59.961 55.000 0.00 0.0 0.00 3.36 F
1275 1783 0.031178 CAAGCAAAGCACAGACCCAC 59.969 55.000 0.00 0.0 0.00 4.61 F
1646 2345 0.040958 GGCCGATTCATGCACGATTC 60.041 55.000 0.00 0.0 0.00 2.52 F
1908 2607 0.458260 GCCCTCCTCTTCTTCTCGTC 59.542 60.000 0.00 0.0 0.00 4.20 F
2200 2902 1.076332 GCCGCTCTTTGTAACGATGT 58.924 50.000 0.00 0.0 0.00 3.06 F
3209 3913 3.072330 TGGCATTGACAGTAAGAACTCCA 59.928 43.478 0.00 0.0 31.97 3.86 F
3217 3921 3.172050 CAGTAAGAACTCCATGTCGTCG 58.828 50.000 0.00 0.0 31.97 5.12 F
4333 5274 2.877168 TGCAAACATTTCAAATGGTGCC 59.123 40.909 26.23 12.6 34.99 5.01 F
5434 6375 3.687698 CCATTTTGGGGACTTGTAGTACG 59.312 47.826 0.00 0.0 32.67 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1256 1764 0.031178 GTGGGTCTGTGCTTTGCTTG 59.969 55.000 0.00 0.0 0.00 4.01 R
2004 2705 3.297620 GCCTGCCCAGTGGTTGTG 61.298 66.667 8.74 0.0 0.00 3.33 R
2992 3696 3.508793 CACCATTCTCACCTTCAGCATTT 59.491 43.478 0.00 0.0 0.00 2.32 R
3592 4391 1.138464 GGACTCTTACCCCTTTAGCCG 59.862 57.143 0.00 0.0 0.00 5.52 R
3847 4787 5.374921 AGGAATGAAGGCTAAGACATGATG 58.625 41.667 0.00 0.0 0.00 3.07 R
3988 4929 0.183492 TTCCTCCAAGTGCAGCAACT 59.817 50.000 0.00 0.0 0.00 3.16 R
4333 5274 4.398319 CCCTATTTGTAGTAGCCAATGGG 58.602 47.826 0.00 0.0 37.18 4.00 R
4343 5284 4.532521 AGACTGAACTGCCCTATTTGTAGT 59.467 41.667 0.00 0.0 0.00 2.73 R
5567 6511 1.420138 GGGACTTGGTGAAAGGAGACA 59.580 52.381 0.00 0.0 40.51 3.41 R
6578 7539 1.303317 GTGGCTTCGACAATGGGGT 60.303 57.895 0.00 0.0 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.112129 GGAGGGAGAGAGAGTATAGATCC 57.888 52.174 0.00 0.00 0.00 3.36
26 27 4.258543 GGAGAGAGAGTATAGATCCGTGG 58.741 52.174 0.00 0.00 0.00 4.94
40 41 2.265739 GTGGATCTGCCGTGCTGA 59.734 61.111 7.65 7.65 40.47 4.26
49 50 0.107066 TGCCGTGCTGATTGGATCAT 60.107 50.000 0.00 0.00 38.85 2.45
50 51 0.590195 GCCGTGCTGATTGGATCATC 59.410 55.000 0.00 0.00 38.85 2.92
51 52 1.957668 CCGTGCTGATTGGATCATCA 58.042 50.000 0.00 0.00 38.85 3.07
53 54 2.289820 CCGTGCTGATTGGATCATCAAG 59.710 50.000 0.00 0.00 37.19 3.02
54 55 2.289820 CGTGCTGATTGGATCATCAAGG 59.710 50.000 0.00 0.00 37.19 3.61
55 56 3.548770 GTGCTGATTGGATCATCAAGGA 58.451 45.455 0.00 0.00 37.19 3.36
56 57 3.949754 GTGCTGATTGGATCATCAAGGAA 59.050 43.478 0.00 0.00 37.19 3.36
57 58 4.400251 GTGCTGATTGGATCATCAAGGAAA 59.600 41.667 0.00 0.00 37.19 3.13
59 60 5.659525 TGCTGATTGGATCATCAAGGAAAAT 59.340 36.000 0.00 0.00 38.85 1.82
60 61 5.983720 GCTGATTGGATCATCAAGGAAAATG 59.016 40.000 0.00 0.00 38.85 2.32
68 69 8.306038 TGGATCATCAAGGAAAATGTAAACAAG 58.694 33.333 0.00 0.00 0.00 3.16
70 71 7.048629 TCATCAAGGAAAATGTAAACAAGCA 57.951 32.000 0.00 0.00 0.00 3.91
71 72 7.495901 TCATCAAGGAAAATGTAAACAAGCAA 58.504 30.769 0.00 0.00 0.00 3.91
141 142 9.244799 CACTAATCTTATCATGTGCGTAGTTTA 57.755 33.333 0.00 0.00 0.00 2.01
142 143 9.811995 ACTAATCTTATCATGTGCGTAGTTTAA 57.188 29.630 0.00 0.00 0.00 1.52
155 156 3.247648 CGTAGTTTAATCAATCAGCCCCG 59.752 47.826 0.00 0.00 0.00 5.73
223 224 2.290916 GCATCAAGCCATCATCAGACAG 59.709 50.000 0.00 0.00 37.23 3.51
225 226 4.700700 CATCAAGCCATCATCAGACAGTA 58.299 43.478 0.00 0.00 0.00 2.74
234 236 7.714377 AGCCATCATCAGACAGTATTTTTAGAG 59.286 37.037 0.00 0.00 0.00 2.43
269 271 8.394121 GCCTCTGAAACATTAGTTAAAGAGATG 58.606 37.037 15.91 6.82 43.40 2.90
270 272 8.887717 CCTCTGAAACATTAGTTAAAGAGATGG 58.112 37.037 15.91 3.80 43.40 3.51
343 361 1.613437 CCACCATTCCTGTCCAACAAC 59.387 52.381 0.00 0.00 0.00 3.32
398 452 5.490472 CAAGTTTTTGCGTCTGATGAATG 57.510 39.130 0.00 0.00 0.00 2.67
399 453 5.214417 CAAGTTTTTGCGTCTGATGAATGA 58.786 37.500 0.00 0.00 0.00 2.57
400 454 5.633830 AGTTTTTGCGTCTGATGAATGAT 57.366 34.783 0.00 0.00 0.00 2.45
401 455 5.396484 AGTTTTTGCGTCTGATGAATGATG 58.604 37.500 0.00 0.00 0.00 3.07
402 456 5.181811 AGTTTTTGCGTCTGATGAATGATGA 59.818 36.000 0.00 0.00 0.00 2.92
403 457 5.823209 TTTTGCGTCTGATGAATGATGAT 57.177 34.783 0.00 0.00 0.00 2.45
404 458 4.806342 TTGCGTCTGATGAATGATGATG 57.194 40.909 0.00 0.00 0.00 3.07
405 459 4.062677 TGCGTCTGATGAATGATGATGA 57.937 40.909 0.00 0.00 0.00 2.92
406 460 4.638304 TGCGTCTGATGAATGATGATGAT 58.362 39.130 0.00 0.00 0.00 2.45
407 461 4.689345 TGCGTCTGATGAATGATGATGATC 59.311 41.667 0.00 0.00 0.00 2.92
427 481 1.086696 AACGATTTGACGGAGCATGG 58.913 50.000 0.00 0.00 37.61 3.66
480 534 1.304282 GGGGCATCGGATATGGCAT 59.696 57.895 4.88 4.88 45.13 4.40
580 1040 2.295909 CAGAAAAGGAAAATGCGTCCCA 59.704 45.455 0.00 0.00 35.59 4.37
611 1071 1.381851 GATGGATGGATGGAGGGGC 59.618 63.158 0.00 0.00 0.00 5.80
613 1073 1.432852 ATGGATGGATGGAGGGGCAG 61.433 60.000 0.00 0.00 0.00 4.85
732 1197 4.199310 TGAATTCCTTCCCATTGATCGAC 58.801 43.478 2.27 0.00 0.00 4.20
734 1199 1.578897 TCCTTCCCATTGATCGACCA 58.421 50.000 0.00 0.00 0.00 4.02
806 1285 2.124487 CGCGTCCTCTCTCTCCCT 60.124 66.667 0.00 0.00 0.00 4.20
808 1287 1.226262 GCGTCCTCTCTCTCCCTCT 59.774 63.158 0.00 0.00 0.00 3.69
854 1337 1.975407 CCCTGCTTTGACCCTGCTG 60.975 63.158 0.00 0.00 0.00 4.41
855 1338 2.633509 CCTGCTTTGACCCTGCTGC 61.634 63.158 0.00 0.00 0.00 5.25
856 1339 2.598394 TGCTTTGACCCTGCTGCC 60.598 61.111 0.00 0.00 0.00 4.85
857 1340 3.376918 GCTTTGACCCTGCTGCCC 61.377 66.667 0.00 0.00 0.00 5.36
887 1370 3.279875 GGCTTTATCTGCCCGCCG 61.280 66.667 0.00 0.00 44.32 6.46
1146 1654 1.597027 CCATGGTACGGGAATCGCC 60.597 63.158 2.57 0.00 43.89 5.54
1166 1674 2.360350 CGCCAACATGCACCCTCT 60.360 61.111 0.00 0.00 0.00 3.69
1170 1678 0.038744 CCAACATGCACCCTCTTCCT 59.961 55.000 0.00 0.00 0.00 3.36
1188 1696 2.191846 TTCCCTCCCTCCCTCCCTT 61.192 63.158 0.00 0.00 0.00 3.95
1189 1697 2.040359 CCCTCCCTCCCTCCCTTC 60.040 72.222 0.00 0.00 0.00 3.46
1190 1698 2.040359 CCTCCCTCCCTCCCTTCC 60.040 72.222 0.00 0.00 0.00 3.46
1191 1699 2.652113 CCTCCCTCCCTCCCTTCCT 61.652 68.421 0.00 0.00 0.00 3.36
1192 1700 1.074850 CTCCCTCCCTCCCTTCCTC 60.075 68.421 0.00 0.00 0.00 3.71
1193 1701 2.040359 CCCTCCCTCCCTTCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
1194 1702 2.040359 CCTCCCTCCCTTCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
1195 1703 2.040359 CTCCCTCCCTTCCTCCCC 60.040 72.222 0.00 0.00 0.00 4.81
1216 1724 4.840005 GCGTGGTCCAGGGCTAGC 62.840 72.222 13.34 6.04 0.00 3.42
1225 1733 1.382420 CAGGGCTAGCAGGAGGAGT 60.382 63.158 18.24 0.00 0.00 3.85
1241 1749 4.180057 GAGGAGTTGAATCTGTACTGCTG 58.820 47.826 8.74 0.00 40.11 4.41
1247 1755 6.000219 AGTTGAATCTGTACTGCTGTCAAAT 59.000 36.000 0.00 9.12 0.00 2.32
1248 1756 6.148480 AGTTGAATCTGTACTGCTGTCAAATC 59.852 38.462 0.00 0.00 0.00 2.17
1249 1757 5.550290 TGAATCTGTACTGCTGTCAAATCA 58.450 37.500 0.00 0.00 0.00 2.57
1250 1758 5.997129 TGAATCTGTACTGCTGTCAAATCAA 59.003 36.000 0.00 0.00 0.00 2.57
1251 1759 6.486320 TGAATCTGTACTGCTGTCAAATCAAA 59.514 34.615 0.00 0.00 0.00 2.69
1252 1760 5.929697 TCTGTACTGCTGTCAAATCAAAG 57.070 39.130 0.00 0.00 0.00 2.77
1253 1761 5.368145 TCTGTACTGCTGTCAAATCAAAGT 58.632 37.500 0.00 0.00 0.00 2.66
1254 1762 5.466728 TCTGTACTGCTGTCAAATCAAAGTC 59.533 40.000 0.00 0.00 0.00 3.01
1255 1763 5.368145 TGTACTGCTGTCAAATCAAAGTCT 58.632 37.500 0.00 0.00 0.00 3.24
1256 1764 5.466728 TGTACTGCTGTCAAATCAAAGTCTC 59.533 40.000 0.00 0.00 0.00 3.36
1257 1765 4.454678 ACTGCTGTCAAATCAAAGTCTCA 58.545 39.130 0.00 0.00 0.00 3.27
1258 1766 4.883585 ACTGCTGTCAAATCAAAGTCTCAA 59.116 37.500 0.00 0.00 0.00 3.02
1259 1767 5.008415 ACTGCTGTCAAATCAAAGTCTCAAG 59.992 40.000 0.00 0.00 0.00 3.02
1260 1768 4.225208 GCTGTCAAATCAAAGTCTCAAGC 58.775 43.478 0.00 0.00 0.00 4.01
1261 1769 4.261322 GCTGTCAAATCAAAGTCTCAAGCA 60.261 41.667 0.00 0.00 0.00 3.91
1274 1782 0.106769 TCAAGCAAAGCACAGACCCA 60.107 50.000 0.00 0.00 0.00 4.51
1275 1783 0.031178 CAAGCAAAGCACAGACCCAC 59.969 55.000 0.00 0.00 0.00 4.61
1293 1801 3.047877 CCGGTTCCGTGCTGTTCC 61.048 66.667 10.36 0.00 0.00 3.62
1297 1805 2.280524 TTCCGTGCTGTTCCACCG 60.281 61.111 0.00 0.00 32.10 4.94
1320 1828 6.458342 CCGCAGTGTATTTTTCCCTTAGATTC 60.458 42.308 0.00 0.00 0.00 2.52
1448 2145 2.706890 TGCCCTGTCGGTCTATTTTTC 58.293 47.619 0.00 0.00 0.00 2.29
1558 2257 4.035208 CGTAGCCACTTTATTGGGAATCAC 59.965 45.833 0.00 0.00 37.10 3.06
1582 2281 3.011949 TGCTTTGGAATCTGCGTTTTC 57.988 42.857 0.00 0.00 0.00 2.29
1598 2297 3.371898 CGTTTTCCCGTCCAAATACCTAC 59.628 47.826 0.00 0.00 0.00 3.18
1599 2298 2.965572 TTCCCGTCCAAATACCTACG 57.034 50.000 0.00 0.00 35.20 3.51
1600 2299 2.142356 TCCCGTCCAAATACCTACGA 57.858 50.000 0.00 0.00 37.53 3.43
1601 2300 2.455557 TCCCGTCCAAATACCTACGAA 58.544 47.619 0.00 0.00 37.53 3.85
1602 2301 2.830923 TCCCGTCCAAATACCTACGAAA 59.169 45.455 0.00 0.00 37.53 3.46
1603 2302 2.931969 CCCGTCCAAATACCTACGAAAC 59.068 50.000 0.00 0.00 37.53 2.78
1604 2303 3.368739 CCCGTCCAAATACCTACGAAACT 60.369 47.826 0.00 0.00 37.53 2.66
1605 2304 3.615496 CCGTCCAAATACCTACGAAACTG 59.385 47.826 0.00 0.00 37.53 3.16
1606 2305 3.061697 CGTCCAAATACCTACGAAACTGC 59.938 47.826 0.00 0.00 37.53 4.40
1607 2306 4.251268 GTCCAAATACCTACGAAACTGCT 58.749 43.478 0.00 0.00 0.00 4.24
1608 2307 4.694037 GTCCAAATACCTACGAAACTGCTT 59.306 41.667 0.00 0.00 0.00 3.91
1609 2308 5.180680 GTCCAAATACCTACGAAACTGCTTT 59.819 40.000 0.00 0.00 0.00 3.51
1610 2309 5.180492 TCCAAATACCTACGAAACTGCTTTG 59.820 40.000 0.00 0.00 0.00 2.77
1611 2310 4.680171 AATACCTACGAAACTGCTTTGC 57.320 40.909 0.00 0.00 0.00 3.68
1612 2311 0.865769 ACCTACGAAACTGCTTTGCG 59.134 50.000 0.00 0.00 0.00 4.85
1613 2312 0.452784 CCTACGAAACTGCTTTGCGC 60.453 55.000 0.00 0.00 39.77 6.09
1615 2314 0.041663 TACGAAACTGCTTTGCGCAC 60.042 50.000 11.12 0.00 45.47 5.34
1616 2315 2.349376 CGAAACTGCTTTGCGCACG 61.349 57.895 11.12 5.36 45.47 5.34
1617 2316 1.010125 GAAACTGCTTTGCGCACGA 60.010 52.632 11.12 0.00 45.47 4.35
1618 2317 1.262166 GAAACTGCTTTGCGCACGAC 61.262 55.000 11.12 1.95 45.47 4.34
1619 2318 2.964924 AAACTGCTTTGCGCACGACG 62.965 55.000 11.12 0.00 45.47 5.12
1637 2336 2.514592 CCTGCGTGGCCGATTCAT 60.515 61.111 0.00 0.00 35.63 2.57
1638 2337 2.711311 CTGCGTGGCCGATTCATG 59.289 61.111 0.00 0.00 35.63 3.07
1639 2338 3.459378 CTGCGTGGCCGATTCATGC 62.459 63.158 0.00 0.00 44.75 4.06
1640 2339 3.507924 GCGTGGCCGATTCATGCA 61.508 61.111 0.00 0.00 44.14 3.96
1641 2340 2.404789 CGTGGCCGATTCATGCAC 59.595 61.111 0.00 0.00 35.63 4.57
1642 2341 2.404789 GTGGCCGATTCATGCACG 59.595 61.111 0.00 0.00 0.00 5.34
1643 2342 2.106074 GTGGCCGATTCATGCACGA 61.106 57.895 0.00 0.00 0.00 4.35
1644 2343 1.153188 TGGCCGATTCATGCACGAT 60.153 52.632 0.00 0.00 0.00 3.73
1645 2344 0.747644 TGGCCGATTCATGCACGATT 60.748 50.000 0.00 0.00 0.00 3.34
1646 2345 0.040958 GGCCGATTCATGCACGATTC 60.041 55.000 0.00 0.00 0.00 2.52
1647 2346 0.657312 GCCGATTCATGCACGATTCA 59.343 50.000 5.63 0.00 0.00 2.57
1648 2347 1.063912 GCCGATTCATGCACGATTCAA 59.936 47.619 5.63 0.00 0.00 2.69
1649 2348 2.477694 GCCGATTCATGCACGATTCAAA 60.478 45.455 5.63 0.00 0.00 2.69
1650 2349 3.757184 CCGATTCATGCACGATTCAAAA 58.243 40.909 5.63 0.00 0.00 2.44
1651 2350 4.353737 CCGATTCATGCACGATTCAAAAT 58.646 39.130 5.63 0.00 0.00 1.82
1652 2351 4.438797 CCGATTCATGCACGATTCAAAATC 59.561 41.667 5.63 0.00 0.00 2.17
1653 2352 5.029654 CGATTCATGCACGATTCAAAATCA 58.970 37.500 5.63 0.00 0.00 2.57
1654 2353 5.684184 CGATTCATGCACGATTCAAAATCAT 59.316 36.000 5.63 0.00 0.00 2.45
1655 2354 6.852345 CGATTCATGCACGATTCAAAATCATA 59.148 34.615 5.63 0.00 0.00 2.15
1656 2355 7.149240 CGATTCATGCACGATTCAAAATCATAC 60.149 37.037 5.63 0.00 0.00 2.39
1657 2356 5.500825 TCATGCACGATTCAAAATCATACG 58.499 37.500 0.00 0.00 0.00 3.06
1658 2357 4.271590 TGCACGATTCAAAATCATACGG 57.728 40.909 0.00 0.00 0.00 4.02
1659 2358 3.687212 TGCACGATTCAAAATCATACGGT 59.313 39.130 0.00 0.00 0.00 4.83
1660 2359 4.028383 GCACGATTCAAAATCATACGGTG 58.972 43.478 0.00 1.78 0.00 4.94
1661 2360 4.436852 GCACGATTCAAAATCATACGGTGT 60.437 41.667 0.00 0.00 0.00 4.16
1662 2361 5.255596 CACGATTCAAAATCATACGGTGTC 58.744 41.667 0.00 0.00 0.00 3.67
1663 2362 4.331717 ACGATTCAAAATCATACGGTGTCC 59.668 41.667 0.00 0.00 0.00 4.02
1664 2363 4.570772 CGATTCAAAATCATACGGTGTCCT 59.429 41.667 0.00 0.00 0.00 3.85
1665 2364 5.502382 CGATTCAAAATCATACGGTGTCCTG 60.502 44.000 0.00 0.00 0.00 3.86
1666 2365 3.006940 TCAAAATCATACGGTGTCCTGC 58.993 45.455 0.00 0.00 0.00 4.85
1667 2366 2.746904 CAAAATCATACGGTGTCCTGCA 59.253 45.455 0.00 0.00 0.00 4.41
1668 2367 2.315925 AATCATACGGTGTCCTGCAG 57.684 50.000 6.78 6.78 0.00 4.41
1669 2368 1.195115 ATCATACGGTGTCCTGCAGT 58.805 50.000 13.81 0.00 0.00 4.40
1670 2369 0.973632 TCATACGGTGTCCTGCAGTT 59.026 50.000 13.81 0.00 0.00 3.16
1671 2370 1.346395 TCATACGGTGTCCTGCAGTTT 59.654 47.619 13.81 0.00 0.00 2.66
1672 2371 2.563620 TCATACGGTGTCCTGCAGTTTA 59.436 45.455 13.81 0.00 0.00 2.01
1673 2372 3.196901 TCATACGGTGTCCTGCAGTTTAT 59.803 43.478 13.81 0.00 0.00 1.40
1674 2373 2.561478 ACGGTGTCCTGCAGTTTATT 57.439 45.000 13.81 0.00 0.00 1.40
1675 2374 2.423577 ACGGTGTCCTGCAGTTTATTC 58.576 47.619 13.81 0.00 0.00 1.75
1676 2375 1.737793 CGGTGTCCTGCAGTTTATTCC 59.262 52.381 13.81 6.42 0.00 3.01
1677 2376 2.092323 GGTGTCCTGCAGTTTATTCCC 58.908 52.381 13.81 0.00 0.00 3.97
1678 2377 2.554344 GGTGTCCTGCAGTTTATTCCCA 60.554 50.000 13.81 0.00 0.00 4.37
1679 2378 2.488153 GTGTCCTGCAGTTTATTCCCAC 59.512 50.000 13.81 3.65 0.00 4.61
1680 2379 2.107378 TGTCCTGCAGTTTATTCCCACA 59.893 45.455 13.81 0.00 0.00 4.17
1681 2380 3.153919 GTCCTGCAGTTTATTCCCACAA 58.846 45.455 13.81 0.00 0.00 3.33
1682 2381 3.572255 GTCCTGCAGTTTATTCCCACAAA 59.428 43.478 13.81 0.00 0.00 2.83
1683 2382 3.572255 TCCTGCAGTTTATTCCCACAAAC 59.428 43.478 13.81 0.00 35.36 2.93
1684 2383 3.306019 CCTGCAGTTTATTCCCACAAACC 60.306 47.826 13.81 0.00 35.66 3.27
1685 2384 3.300388 TGCAGTTTATTCCCACAAACCA 58.700 40.909 0.00 0.00 35.66 3.67
1686 2385 3.706594 TGCAGTTTATTCCCACAAACCAA 59.293 39.130 0.00 0.00 35.66 3.67
1687 2386 4.055360 GCAGTTTATTCCCACAAACCAAC 58.945 43.478 0.00 0.00 35.66 3.77
1688 2387 4.295051 CAGTTTATTCCCACAAACCAACG 58.705 43.478 0.00 0.00 35.66 4.10
1689 2388 3.319689 AGTTTATTCCCACAAACCAACGG 59.680 43.478 0.00 0.00 35.66 4.44
1690 2389 1.249407 TATTCCCACAAACCAACGGC 58.751 50.000 0.00 0.00 0.00 5.68
1691 2390 0.469144 ATTCCCACAAACCAACGGCT 60.469 50.000 0.00 0.00 0.00 5.52
1692 2391 0.684805 TTCCCACAAACCAACGGCTT 60.685 50.000 0.00 0.00 0.00 4.35
1693 2392 1.067250 CCCACAAACCAACGGCTTG 59.933 57.895 0.00 0.00 35.19 4.01
1694 2393 1.388065 CCCACAAACCAACGGCTTGA 61.388 55.000 3.27 0.00 33.03 3.02
1695 2394 0.673437 CCACAAACCAACGGCTTGAT 59.327 50.000 3.27 0.00 33.03 2.57
1696 2395 1.068434 CCACAAACCAACGGCTTGATT 59.932 47.619 3.27 0.00 33.03 2.57
1697 2396 2.294791 CCACAAACCAACGGCTTGATTA 59.705 45.455 3.27 0.00 33.03 1.75
1698 2397 3.243569 CCACAAACCAACGGCTTGATTAA 60.244 43.478 3.27 0.00 33.03 1.40
1699 2398 3.733727 CACAAACCAACGGCTTGATTAAC 59.266 43.478 3.27 0.00 33.03 2.01
1700 2399 3.634910 ACAAACCAACGGCTTGATTAACT 59.365 39.130 3.27 0.00 33.03 2.24
1701 2400 4.822896 ACAAACCAACGGCTTGATTAACTA 59.177 37.500 3.27 0.00 33.03 2.24
1702 2401 5.151389 CAAACCAACGGCTTGATTAACTAC 58.849 41.667 0.00 0.00 31.09 2.73
1703 2402 4.010667 ACCAACGGCTTGATTAACTACA 57.989 40.909 0.00 0.00 0.00 2.74
1704 2403 4.585879 ACCAACGGCTTGATTAACTACAT 58.414 39.130 0.00 0.00 0.00 2.29
1705 2404 4.634443 ACCAACGGCTTGATTAACTACATC 59.366 41.667 0.00 0.00 0.00 3.06
1706 2405 4.260212 CCAACGGCTTGATTAACTACATCG 60.260 45.833 0.00 0.00 0.00 3.84
1707 2406 4.119442 ACGGCTTGATTAACTACATCGT 57.881 40.909 0.00 0.00 0.00 3.73
1708 2407 4.110482 ACGGCTTGATTAACTACATCGTC 58.890 43.478 0.00 0.00 0.00 4.20
1709 2408 3.489785 CGGCTTGATTAACTACATCGTCC 59.510 47.826 0.00 0.00 0.00 4.79
1710 2409 4.439057 GGCTTGATTAACTACATCGTCCA 58.561 43.478 0.00 0.00 0.00 4.02
1711 2410 4.270325 GGCTTGATTAACTACATCGTCCAC 59.730 45.833 0.00 0.00 0.00 4.02
1712 2411 4.868171 GCTTGATTAACTACATCGTCCACA 59.132 41.667 0.00 0.00 0.00 4.17
1713 2412 5.350365 GCTTGATTAACTACATCGTCCACAA 59.650 40.000 0.00 0.00 0.00 3.33
1714 2413 6.128391 GCTTGATTAACTACATCGTCCACAAA 60.128 38.462 0.00 0.00 0.00 2.83
1715 2414 7.414098 GCTTGATTAACTACATCGTCCACAAAT 60.414 37.037 0.00 0.00 0.00 2.32
1716 2415 7.534085 TGATTAACTACATCGTCCACAAATC 57.466 36.000 0.00 0.00 0.00 2.17
1717 2416 6.254804 TGATTAACTACATCGTCCACAAATCG 59.745 38.462 0.00 0.00 0.00 3.34
1718 2417 3.587797 ACTACATCGTCCACAAATCGT 57.412 42.857 0.00 0.00 0.00 3.73
1719 2418 3.250744 ACTACATCGTCCACAAATCGTG 58.749 45.455 0.00 0.00 45.92 4.35
1720 2419 0.796312 ACATCGTCCACAAATCGTGC 59.204 50.000 0.00 0.00 44.91 5.34
1721 2420 0.795698 CATCGTCCACAAATCGTGCA 59.204 50.000 0.00 0.00 44.91 4.57
1722 2421 0.796312 ATCGTCCACAAATCGTGCAC 59.204 50.000 6.82 6.82 44.91 4.57
1723 2422 0.530870 TCGTCCACAAATCGTGCACA 60.531 50.000 18.64 4.45 44.91 4.57
1724 2423 0.516877 CGTCCACAAATCGTGCACAT 59.483 50.000 18.64 6.80 44.91 3.21
1725 2424 1.725611 CGTCCACAAATCGTGCACATG 60.726 52.381 18.64 12.00 44.91 3.21
1726 2425 1.266718 GTCCACAAATCGTGCACATGT 59.733 47.619 18.64 12.64 44.91 3.21
1727 2426 1.266446 TCCACAAATCGTGCACATGTG 59.734 47.619 21.83 21.83 44.91 3.21
1728 2427 1.001487 CCACAAATCGTGCACATGTGT 60.001 47.619 26.01 21.40 44.91 3.72
1729 2428 2.309693 CACAAATCGTGCACATGTGTC 58.690 47.619 26.01 18.27 39.19 3.67
1730 2429 1.069973 ACAAATCGTGCACATGTGTCG 60.070 47.619 26.01 26.57 0.00 4.35
1731 2430 1.069973 CAAATCGTGCACATGTGTCGT 60.070 47.619 29.27 20.17 34.12 4.34
1732 2431 0.512518 AATCGTGCACATGTGTCGTG 59.487 50.000 29.27 18.35 37.43 4.35
1733 2432 0.599991 ATCGTGCACATGTGTCGTGT 60.600 50.000 29.27 21.53 36.71 4.49
1740 2439 3.907178 CACATGTGTCGTGTGTATAGC 57.093 47.619 18.03 0.00 43.81 2.97
1741 2440 3.249917 CACATGTGTCGTGTGTATAGCA 58.750 45.455 18.03 0.00 43.81 3.49
1742 2441 3.865164 CACATGTGTCGTGTGTATAGCAT 59.135 43.478 18.03 0.00 43.81 3.79
1743 2442 4.026558 CACATGTGTCGTGTGTATAGCATC 60.027 45.833 18.03 0.00 43.81 3.91
1744 2443 2.792749 TGTGTCGTGTGTATAGCATCG 58.207 47.619 0.00 0.00 0.00 3.84
1745 2444 2.162809 TGTGTCGTGTGTATAGCATCGT 59.837 45.455 0.00 0.00 0.00 3.73
1746 2445 3.176708 GTGTCGTGTGTATAGCATCGTT 58.823 45.455 0.00 0.00 0.00 3.85
1747 2446 3.001070 GTGTCGTGTGTATAGCATCGTTG 60.001 47.826 0.00 0.00 0.00 4.10
1748 2447 3.119779 TGTCGTGTGTATAGCATCGTTGA 60.120 43.478 0.00 0.00 0.00 3.18
1749 2448 3.855379 GTCGTGTGTATAGCATCGTTGAA 59.145 43.478 0.00 0.00 0.00 2.69
1750 2449 4.325204 GTCGTGTGTATAGCATCGTTGAAA 59.675 41.667 0.00 0.00 0.00 2.69
1751 2450 5.005394 GTCGTGTGTATAGCATCGTTGAAAT 59.995 40.000 0.00 0.00 0.00 2.17
1752 2451 6.197655 GTCGTGTGTATAGCATCGTTGAAATA 59.802 38.462 0.00 0.00 0.00 1.40
1753 2452 6.197655 TCGTGTGTATAGCATCGTTGAAATAC 59.802 38.462 0.00 5.01 0.00 1.89
1754 2453 6.561533 CGTGTGTATAGCATCGTTGAAATACC 60.562 42.308 12.41 7.50 0.00 2.73
1755 2454 6.479001 GTGTGTATAGCATCGTTGAAATACCT 59.521 38.462 12.41 0.00 0.00 3.08
1756 2455 7.650504 GTGTGTATAGCATCGTTGAAATACCTA 59.349 37.037 12.41 0.05 0.00 3.08
1770 2469 3.577649 ATACCTATGCAAGATCGGACG 57.422 47.619 0.00 0.00 0.00 4.79
1831 2530 0.753867 TTCCACGGTGACAACTGCTA 59.246 50.000 10.28 0.00 35.97 3.49
1838 2537 3.250040 ACGGTGACAACTGCTAATGTTTC 59.750 43.478 0.00 0.00 35.97 2.78
1849 2548 8.680903 CAACTGCTAATGTTTCTTAGATGGAAT 58.319 33.333 0.00 0.00 31.58 3.01
1895 2594 2.819984 TTCATCTTGTGCGGCCCTCC 62.820 60.000 0.00 0.00 0.00 4.30
1908 2607 0.458260 GCCCTCCTCTTCTTCTCGTC 59.542 60.000 0.00 0.00 0.00 4.20
1936 2637 8.552034 GTGATTCTTCCGAAACCTAGATTTATG 58.448 37.037 0.00 0.00 31.91 1.90
1937 2638 6.920569 TTCTTCCGAAACCTAGATTTATGC 57.079 37.500 0.00 0.00 0.00 3.14
2200 2902 1.076332 GCCGCTCTTTGTAACGATGT 58.924 50.000 0.00 0.00 0.00 3.06
2273 2975 5.471556 TCATTTCATGTCATTTGGTGCTT 57.528 34.783 0.00 0.00 0.00 3.91
2291 2993 4.153835 GTGCTTCAGAACTTTGGAGATGAG 59.846 45.833 0.00 0.00 0.00 2.90
2308 3010 5.911752 AGATGAGTTATGTCTGCTAACCTG 58.088 41.667 0.00 0.00 30.89 4.00
2404 3106 4.898829 TTTGTGTGGTTCAGATCTGTTG 57.101 40.909 21.92 0.00 0.00 3.33
3208 3912 3.674997 TGGCATTGACAGTAAGAACTCC 58.325 45.455 0.00 0.00 31.97 3.85
3209 3913 3.072330 TGGCATTGACAGTAAGAACTCCA 59.928 43.478 0.00 0.00 31.97 3.86
3211 3915 4.095483 GGCATTGACAGTAAGAACTCCATG 59.905 45.833 0.00 0.00 31.97 3.66
3212 3916 4.697352 GCATTGACAGTAAGAACTCCATGT 59.303 41.667 0.00 0.00 31.97 3.21
3213 3917 5.163814 GCATTGACAGTAAGAACTCCATGTC 60.164 44.000 0.00 0.00 31.97 3.06
3214 3918 4.174411 TGACAGTAAGAACTCCATGTCG 57.826 45.455 0.00 0.00 31.97 4.35
3215 3919 3.572682 TGACAGTAAGAACTCCATGTCGT 59.427 43.478 0.00 0.00 31.97 4.34
3216 3920 4.167268 GACAGTAAGAACTCCATGTCGTC 58.833 47.826 0.00 0.00 31.97 4.20
3217 3921 3.172050 CAGTAAGAACTCCATGTCGTCG 58.828 50.000 0.00 0.00 31.97 5.12
3399 4111 4.377021 TCTATCCATGCGTGTTACCATTC 58.623 43.478 4.96 0.00 0.00 2.67
3682 4622 3.718210 GAGGGTGGGCGAGCTTACG 62.718 68.421 0.00 0.00 0.00 3.18
3727 4667 4.261801 GCTAGTGCTTGGTTCTCCATTTA 58.738 43.478 0.00 0.00 43.91 1.40
3759 4699 8.395633 ACTTATATTGCGATGTTTGTTTCCTAC 58.604 33.333 0.00 0.00 0.00 3.18
3821 4761 6.260936 TCTTTCAATCTGTTCAGTTGAGTTCC 59.739 38.462 13.12 0.00 33.82 3.62
3847 4787 7.641411 CGTATGGAACTGTTCATTTGATGATTC 59.359 37.037 21.01 1.20 39.39 2.52
3985 4926 3.455910 TGGATGCAAGTAGACAGGCTAAT 59.544 43.478 0.00 0.00 0.00 1.73
3988 4929 5.011125 GGATGCAAGTAGACAGGCTAATCTA 59.989 44.000 0.00 4.05 0.00 1.98
4333 5274 2.877168 TGCAAACATTTCAAATGGTGCC 59.123 40.909 26.23 12.60 34.99 5.01
4420 5361 4.976731 CGGATAAATTCGTCTTCGACAGAT 59.023 41.667 0.00 0.00 46.03 2.90
4592 5533 5.075205 AGGATGGAACCTGTCTCTAGCTATA 59.925 44.000 0.00 0.00 39.01 1.31
4793 5734 4.081198 TCAACACTTCATTGCCAAACCTTT 60.081 37.500 0.00 0.00 0.00 3.11
5375 6316 7.482654 TGCACTGAACATATACATTTAGCTC 57.517 36.000 0.00 0.00 0.00 4.09
5434 6375 3.687698 CCATTTTGGGGACTTGTAGTACG 59.312 47.826 0.00 0.00 32.67 3.67
5533 6474 7.673180 CAGGATAATGATAATGGTGGCATTTT 58.327 34.615 0.00 0.00 33.45 1.82
5534 6475 7.816031 CAGGATAATGATAATGGTGGCATTTTC 59.184 37.037 0.00 0.00 33.45 2.29
5535 6476 7.510001 AGGATAATGATAATGGTGGCATTTTCA 59.490 33.333 0.00 0.00 37.10 2.69
5798 6742 1.934589 CTGTTTGTGTCCGTGACTCA 58.065 50.000 5.77 5.45 34.85 3.41
5888 6833 6.687081 TCTTCGTGTTAGTTGTTGGAAATT 57.313 33.333 0.00 0.00 0.00 1.82
6020 6978 2.238646 TGGTAGTGCGGATGGAAGATTT 59.761 45.455 0.00 0.00 0.00 2.17
6097 7056 4.026356 AGTTCCCTTGAATTCTGGTCAG 57.974 45.455 7.05 0.00 31.98 3.51
6258 7219 9.537192 TTCTAGTTTGTTTCTCTATTTCGACAA 57.463 29.630 0.00 0.00 0.00 3.18
6288 7249 6.664428 TTAAAGGGAAAAATTGCAGCTAGT 57.336 33.333 0.00 0.00 0.00 2.57
6296 7257 7.120726 GGGAAAAATTGCAGCTAGTCTACTTTA 59.879 37.037 0.00 0.00 0.00 1.85
6354 7315 2.294233 TCAGCTGCCAAAACATTGTCTC 59.706 45.455 9.47 0.00 0.00 3.36
6447 7408 4.422840 CAATCACATATTTTGGCTTCGCA 58.577 39.130 0.00 0.00 0.00 5.10
6489 7450 1.226831 ACGGTTGGCGCAAAACAAG 60.227 52.632 21.99 17.70 0.00 3.16
6534 7495 0.521735 GTGGCGTGAAACTTCATCCC 59.478 55.000 9.70 7.44 39.73 3.85
6543 7504 1.523758 AACTTCATCCCTGTTGTCGC 58.476 50.000 0.00 0.00 0.00 5.19
6578 7539 0.249699 CGGCCACCACTATCGCATTA 60.250 55.000 2.24 0.00 0.00 1.90
6581 7542 1.878953 CCACCACTATCGCATTACCC 58.121 55.000 0.00 0.00 0.00 3.69
6590 7551 0.537653 TCGCATTACCCCATTGTCGA 59.462 50.000 0.00 0.00 0.00 4.20
6591 7552 1.066071 TCGCATTACCCCATTGTCGAA 60.066 47.619 0.00 0.00 0.00 3.71
6592 7553 1.330521 CGCATTACCCCATTGTCGAAG 59.669 52.381 0.00 0.00 0.00 3.79
6593 7554 1.065551 GCATTACCCCATTGTCGAAGC 59.934 52.381 0.00 0.00 0.00 3.86
6594 7555 1.676006 CATTACCCCATTGTCGAAGCC 59.324 52.381 0.00 0.00 0.00 4.35
6595 7556 0.693622 TTACCCCATTGTCGAAGCCA 59.306 50.000 0.00 0.00 0.00 4.75
6596 7557 0.035820 TACCCCATTGTCGAAGCCAC 60.036 55.000 0.00 0.00 0.00 5.01
6597 7558 2.046285 CCCCATTGTCGAAGCCACC 61.046 63.158 0.00 0.00 0.00 4.61
6598 7559 2.398554 CCCATTGTCGAAGCCACCG 61.399 63.158 0.00 0.00 0.00 4.94
6599 7560 2.480555 CATTGTCGAAGCCACCGC 59.519 61.111 0.00 0.00 0.00 5.68
6600 7561 2.746277 ATTGTCGAAGCCACCGCC 60.746 61.111 0.00 0.00 34.57 6.13
6625 7586 4.473520 CCTGGTCGCCGCTCCATT 62.474 66.667 4.94 0.00 33.01 3.16
6626 7587 3.197790 CTGGTCGCCGCTCCATTG 61.198 66.667 4.94 0.00 33.01 2.82
6627 7588 3.664025 CTGGTCGCCGCTCCATTGA 62.664 63.158 4.94 0.00 33.01 2.57
6628 7589 2.435938 GGTCGCCGCTCCATTGAA 60.436 61.111 0.00 0.00 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.383770 CGGATCTATACTCTCTCTCCCTCC 60.384 54.167 0.00 0.00 0.00 4.30
1 2 4.224370 ACGGATCTATACTCTCTCTCCCTC 59.776 50.000 0.00 0.00 0.00 4.30
22 23 2.913054 ATCAGCACGGCAGATCCACG 62.913 60.000 0.00 0.00 28.88 4.94
26 27 0.462581 TCCAATCAGCACGGCAGATC 60.463 55.000 4.70 0.00 33.80 2.75
40 41 8.814931 TGTTTACATTTTCCTTGATGATCCAAT 58.185 29.630 0.00 0.00 0.00 3.16
49 50 6.097554 TCCTTGCTTGTTTACATTTTCCTTGA 59.902 34.615 0.00 0.00 0.00 3.02
50 51 6.279882 TCCTTGCTTGTTTACATTTTCCTTG 58.720 36.000 0.00 0.00 0.00 3.61
51 52 6.478512 TCCTTGCTTGTTTACATTTTCCTT 57.521 33.333 0.00 0.00 0.00 3.36
57 58 9.905713 TCTCTATTATCCTTGCTTGTTTACATT 57.094 29.630 0.00 0.00 0.00 2.71
59 60 9.330063 CATCTCTATTATCCTTGCTTGTTTACA 57.670 33.333 0.00 0.00 0.00 2.41
60 61 8.778358 CCATCTCTATTATCCTTGCTTGTTTAC 58.222 37.037 0.00 0.00 0.00 2.01
68 69 7.846066 ACTACATCCATCTCTATTATCCTTGC 58.154 38.462 0.00 0.00 0.00 4.01
141 142 1.202698 GCTCTACGGGGCTGATTGATT 60.203 52.381 0.00 0.00 0.00 2.57
142 143 0.394565 GCTCTACGGGGCTGATTGAT 59.605 55.000 0.00 0.00 0.00 2.57
143 144 1.823295 GCTCTACGGGGCTGATTGA 59.177 57.895 0.00 0.00 0.00 2.57
144 145 1.592669 CGCTCTACGGGGCTGATTG 60.593 63.158 0.00 0.00 38.44 2.67
220 221 9.355916 AGGCTTCTTTTTCTCTAAAAATACTGT 57.644 29.630 0.00 0.00 42.22 3.55
223 224 9.833182 CAGAGGCTTCTTTTTCTCTAAAAATAC 57.167 33.333 0.00 0.00 42.22 1.89
225 226 8.697507 TCAGAGGCTTCTTTTTCTCTAAAAAT 57.302 30.769 0.00 0.00 42.22 1.82
234 236 7.652727 ACTAATGTTTCAGAGGCTTCTTTTTC 58.347 34.615 0.00 0.00 0.00 2.29
269 271 0.667184 CAGCAATGGTTTTGGCGTCC 60.667 55.000 0.00 0.00 0.00 4.79
270 272 0.031994 ACAGCAATGGTTTTGGCGTC 59.968 50.000 0.00 0.00 0.00 5.19
333 340 2.115911 GGCGTGTGGTTGTTGGACA 61.116 57.895 0.00 0.00 0.00 4.02
368 386 2.689083 GCAAAAACTTGCACCCCAC 58.311 52.632 5.01 0.00 46.60 4.61
386 440 6.591261 GTTGATCATCATCATTCATCAGACG 58.409 40.000 0.00 0.00 38.89 4.18
396 450 5.049886 CCGTCAAATCGTTGATCATCATCAT 60.050 40.000 0.00 0.00 45.38 2.45
398 452 4.507756 TCCGTCAAATCGTTGATCATCATC 59.492 41.667 0.00 0.00 45.38 2.92
399 453 4.441792 TCCGTCAAATCGTTGATCATCAT 58.558 39.130 0.00 0.00 45.38 2.45
400 454 3.855858 TCCGTCAAATCGTTGATCATCA 58.144 40.909 0.00 0.00 45.38 3.07
401 455 3.302740 GCTCCGTCAAATCGTTGATCATC 60.303 47.826 0.00 0.00 45.38 2.92
402 456 2.609459 GCTCCGTCAAATCGTTGATCAT 59.391 45.455 0.00 0.00 45.38 2.45
403 457 1.999735 GCTCCGTCAAATCGTTGATCA 59.000 47.619 0.00 0.00 45.38 2.92
404 458 1.999735 TGCTCCGTCAAATCGTTGATC 59.000 47.619 0.00 0.00 45.38 2.92
405 459 2.093306 TGCTCCGTCAAATCGTTGAT 57.907 45.000 0.00 0.00 45.38 2.57
406 460 1.731709 CATGCTCCGTCAAATCGTTGA 59.268 47.619 0.00 0.00 41.57 3.18
407 461 1.202065 CCATGCTCCGTCAAATCGTTG 60.202 52.381 0.00 0.00 35.95 4.10
427 481 0.591170 TACGAGCTTGCCAACTTTGC 59.409 50.000 0.00 0.00 0.00 3.68
457 511 3.589654 ATATCCGATGCCCCGTGCG 62.590 63.158 0.00 0.00 45.60 5.34
580 1040 2.443416 CATCCATCCATCCATCGCAAT 58.557 47.619 0.00 0.00 0.00 3.56
589 1049 1.284198 CCCTCCATCCATCCATCCATC 59.716 57.143 0.00 0.00 0.00 3.51
590 1050 1.379776 CCCTCCATCCATCCATCCAT 58.620 55.000 0.00 0.00 0.00 3.41
591 1051 0.773305 CCCCTCCATCCATCCATCCA 60.773 60.000 0.00 0.00 0.00 3.41
592 1052 2.081955 CCCCTCCATCCATCCATCC 58.918 63.158 0.00 0.00 0.00 3.51
593 1053 1.381851 GCCCCTCCATCCATCCATC 59.618 63.158 0.00 0.00 0.00 3.51
594 1054 1.387781 TGCCCCTCCATCCATCCAT 60.388 57.895 0.00 0.00 0.00 3.41
595 1055 2.044280 TGCCCCTCCATCCATCCA 59.956 61.111 0.00 0.00 0.00 3.41
596 1056 2.838467 CCTGCCCCTCCATCCATCC 61.838 68.421 0.00 0.00 0.00 3.51
757 1228 0.693049 ATAATAAGAGGGCGGGGCTG 59.307 55.000 0.00 0.00 0.00 4.85
758 1229 1.073923 CAATAATAAGAGGGCGGGGCT 59.926 52.381 0.00 0.00 0.00 5.19
759 1230 1.534729 CAATAATAAGAGGGCGGGGC 58.465 55.000 0.00 0.00 0.00 5.80
764 1235 2.548480 GTGGACGCAATAATAAGAGGGC 59.452 50.000 0.00 0.00 0.00 5.19
806 1285 1.309347 CAGGGAGCAGGGAGAGAGA 59.691 63.158 0.00 0.00 0.00 3.10
808 1287 2.364842 GCAGGGAGCAGGGAGAGA 60.365 66.667 0.00 0.00 44.79 3.10
943 1436 3.861797 ACCTAATGCCCCGGCGAG 61.862 66.667 9.30 0.00 45.51 5.03
990 1483 0.107654 CCACGGTCATCTTCCTTCCC 60.108 60.000 0.00 0.00 0.00 3.97
991 1484 0.902531 TCCACGGTCATCTTCCTTCC 59.097 55.000 0.00 0.00 0.00 3.46
992 1485 1.134670 CCTCCACGGTCATCTTCCTTC 60.135 57.143 0.00 0.00 0.00 3.46
993 1486 0.905357 CCTCCACGGTCATCTTCCTT 59.095 55.000 0.00 0.00 0.00 3.36
1146 1654 4.101790 GGGTGCATGTTGGCGACG 62.102 66.667 0.00 0.00 36.28 5.12
1166 1674 1.396594 GAGGGAGGGAGGGAAGGAA 59.603 63.158 0.00 0.00 0.00 3.36
1170 1678 2.191846 AAGGGAGGGAGGGAGGGAA 61.192 63.158 0.00 0.00 0.00 3.97
1216 1724 4.753233 CAGTACAGATTCAACTCCTCCTG 58.247 47.826 0.00 0.00 0.00 3.86
1225 1733 5.997129 TGATTTGACAGCAGTACAGATTCAA 59.003 36.000 0.00 0.00 0.00 2.69
1241 1749 5.174579 GCTTTGCTTGAGACTTTGATTTGAC 59.825 40.000 0.00 0.00 0.00 3.18
1247 1755 3.016031 TGTGCTTTGCTTGAGACTTTGA 58.984 40.909 0.00 0.00 0.00 2.69
1248 1756 3.065786 TCTGTGCTTTGCTTGAGACTTTG 59.934 43.478 0.00 0.00 0.00 2.77
1249 1757 3.065925 GTCTGTGCTTTGCTTGAGACTTT 59.934 43.478 0.00 0.00 31.29 2.66
1250 1758 2.615912 GTCTGTGCTTTGCTTGAGACTT 59.384 45.455 0.00 0.00 31.29 3.01
1251 1759 2.216898 GTCTGTGCTTTGCTTGAGACT 58.783 47.619 0.00 0.00 31.29 3.24
1252 1760 1.265365 GGTCTGTGCTTTGCTTGAGAC 59.735 52.381 0.00 0.00 32.31 3.36
1253 1761 1.597742 GGTCTGTGCTTTGCTTGAGA 58.402 50.000 0.00 0.00 0.00 3.27
1254 1762 0.595095 GGGTCTGTGCTTTGCTTGAG 59.405 55.000 0.00 0.00 0.00 3.02
1255 1763 0.106769 TGGGTCTGTGCTTTGCTTGA 60.107 50.000 0.00 0.00 0.00 3.02
1256 1764 0.031178 GTGGGTCTGTGCTTTGCTTG 59.969 55.000 0.00 0.00 0.00 4.01
1257 1765 1.109323 GGTGGGTCTGTGCTTTGCTT 61.109 55.000 0.00 0.00 0.00 3.91
1258 1766 1.529244 GGTGGGTCTGTGCTTTGCT 60.529 57.895 0.00 0.00 0.00 3.91
1259 1767 2.564721 GGGTGGGTCTGTGCTTTGC 61.565 63.158 0.00 0.00 0.00 3.68
1260 1768 2.260869 CGGGTGGGTCTGTGCTTTG 61.261 63.158 0.00 0.00 0.00 2.77
1261 1769 2.113139 CGGGTGGGTCTGTGCTTT 59.887 61.111 0.00 0.00 0.00 3.51
1274 1782 3.819877 GAACAGCACGGAACCGGGT 62.820 63.158 16.77 0.00 45.78 5.28
1275 1783 3.047877 GAACAGCACGGAACCGGG 61.048 66.667 17.44 14.60 46.93 5.73
1297 1805 7.391148 TGAATCTAAGGGAAAAATACACTGC 57.609 36.000 0.00 0.00 0.00 4.40
1320 1828 2.091588 GCATCAAGCAAACAAGCGATTG 59.908 45.455 12.67 12.67 44.79 2.67
1405 1913 4.589908 AGTGAAAAATAGGGAGCGTGAAT 58.410 39.130 0.00 0.00 0.00 2.57
1406 1914 4.015872 AGTGAAAAATAGGGAGCGTGAA 57.984 40.909 0.00 0.00 0.00 3.18
1407 1915 3.695830 AGTGAAAAATAGGGAGCGTGA 57.304 42.857 0.00 0.00 0.00 4.35
1408 1916 3.670627 GCAAGTGAAAAATAGGGAGCGTG 60.671 47.826 0.00 0.00 0.00 5.34
1529 2226 1.935933 ATAAAGTGGCTACGCGAAGG 58.064 50.000 15.93 2.88 0.00 3.46
1530 2227 2.030457 CCAATAAAGTGGCTACGCGAAG 59.970 50.000 15.93 0.00 0.00 3.79
1558 2257 0.171903 CGCAGATTCCAAAGCAAGGG 59.828 55.000 0.00 0.00 0.00 3.95
1582 2281 2.931969 GTTTCGTAGGTATTTGGACGGG 59.068 50.000 0.00 0.00 36.02 5.28
1620 2319 2.514592 ATGAATCGGCCACGCAGG 60.515 61.111 2.24 0.00 40.69 4.85
1621 2320 2.711311 CATGAATCGGCCACGCAG 59.289 61.111 2.24 0.00 40.69 5.18
1622 2321 3.507924 GCATGAATCGGCCACGCA 61.508 61.111 2.24 0.00 40.69 5.24
1623 2322 3.507924 TGCATGAATCGGCCACGC 61.508 61.111 2.24 0.00 40.69 5.34
1624 2323 2.404789 GTGCATGAATCGGCCACG 59.595 61.111 2.24 0.00 42.74 4.94
1625 2324 1.439353 ATCGTGCATGAATCGGCCAC 61.439 55.000 13.65 0.00 0.00 5.01
1626 2325 0.747644 AATCGTGCATGAATCGGCCA 60.748 50.000 13.65 0.00 0.00 5.36
1627 2326 0.040958 GAATCGTGCATGAATCGGCC 60.041 55.000 13.65 0.00 0.00 6.13
1628 2327 0.657312 TGAATCGTGCATGAATCGGC 59.343 50.000 13.65 1.67 0.00 5.54
1629 2328 3.403613 TTTGAATCGTGCATGAATCGG 57.596 42.857 13.65 0.00 0.00 4.18
1630 2329 5.029654 TGATTTTGAATCGTGCATGAATCG 58.970 37.500 13.65 0.00 0.00 3.34
1631 2330 7.149240 CGTATGATTTTGAATCGTGCATGAATC 60.149 37.037 13.65 14.86 0.00 2.52
1632 2331 6.634035 CGTATGATTTTGAATCGTGCATGAAT 59.366 34.615 13.65 3.99 0.00 2.57
1633 2332 5.964751 CGTATGATTTTGAATCGTGCATGAA 59.035 36.000 13.65 0.00 0.00 2.57
1634 2333 5.500825 CGTATGATTTTGAATCGTGCATGA 58.499 37.500 11.83 11.83 0.00 3.07
1635 2334 4.671964 CCGTATGATTTTGAATCGTGCATG 59.328 41.667 0.00 0.00 0.00 4.06
1636 2335 4.335315 ACCGTATGATTTTGAATCGTGCAT 59.665 37.500 10.22 0.00 0.00 3.96
1637 2336 3.687212 ACCGTATGATTTTGAATCGTGCA 59.313 39.130 10.22 0.00 0.00 4.57
1638 2337 4.028383 CACCGTATGATTTTGAATCGTGC 58.972 43.478 5.81 3.93 0.00 5.34
1639 2338 5.216566 ACACCGTATGATTTTGAATCGTG 57.783 39.130 5.81 5.33 0.00 4.35
1640 2339 4.331717 GGACACCGTATGATTTTGAATCGT 59.668 41.667 1.51 1.51 0.00 3.73
1641 2340 4.570772 AGGACACCGTATGATTTTGAATCG 59.429 41.667 0.00 0.00 0.00 3.34
1642 2341 5.730568 GCAGGACACCGTATGATTTTGAATC 60.731 44.000 0.00 0.00 0.00 2.52
1643 2342 4.096382 GCAGGACACCGTATGATTTTGAAT 59.904 41.667 0.00 0.00 0.00 2.57
1644 2343 3.438781 GCAGGACACCGTATGATTTTGAA 59.561 43.478 0.00 0.00 0.00 2.69
1645 2344 3.006940 GCAGGACACCGTATGATTTTGA 58.993 45.455 0.00 0.00 0.00 2.69
1646 2345 2.746904 TGCAGGACACCGTATGATTTTG 59.253 45.455 0.00 0.00 0.00 2.44
1647 2346 3.009723 CTGCAGGACACCGTATGATTTT 58.990 45.455 5.57 0.00 0.00 1.82
1648 2347 2.027192 ACTGCAGGACACCGTATGATTT 60.027 45.455 19.93 0.00 0.00 2.17
1649 2348 1.555075 ACTGCAGGACACCGTATGATT 59.445 47.619 19.93 0.00 0.00 2.57
1650 2349 1.195115 ACTGCAGGACACCGTATGAT 58.805 50.000 19.93 0.00 0.00 2.45
1651 2350 0.973632 AACTGCAGGACACCGTATGA 59.026 50.000 19.93 0.00 0.00 2.15
1652 2351 1.808411 AAACTGCAGGACACCGTATG 58.192 50.000 19.93 0.00 0.00 2.39
1653 2352 3.906720 ATAAACTGCAGGACACCGTAT 57.093 42.857 19.93 1.88 0.00 3.06
1654 2353 3.592059 GAATAAACTGCAGGACACCGTA 58.408 45.455 19.93 0.00 0.00 4.02
1655 2354 2.423577 GAATAAACTGCAGGACACCGT 58.576 47.619 19.93 0.00 0.00 4.83
1656 2355 1.737793 GGAATAAACTGCAGGACACCG 59.262 52.381 19.93 0.00 0.00 4.94
1657 2356 2.092323 GGGAATAAACTGCAGGACACC 58.908 52.381 19.93 12.67 0.00 4.16
1658 2357 2.488153 GTGGGAATAAACTGCAGGACAC 59.512 50.000 19.93 10.47 0.00 3.67
1659 2358 2.107378 TGTGGGAATAAACTGCAGGACA 59.893 45.455 19.93 1.91 0.00 4.02
1660 2359 2.790433 TGTGGGAATAAACTGCAGGAC 58.210 47.619 19.93 2.35 0.00 3.85
1661 2360 3.517296 TTGTGGGAATAAACTGCAGGA 57.483 42.857 19.93 2.87 0.00 3.86
1662 2361 3.306019 GGTTTGTGGGAATAAACTGCAGG 60.306 47.826 19.93 0.00 37.07 4.85
1663 2362 3.320541 TGGTTTGTGGGAATAAACTGCAG 59.679 43.478 13.48 13.48 37.07 4.41
1664 2363 3.300388 TGGTTTGTGGGAATAAACTGCA 58.700 40.909 0.00 0.00 37.07 4.41
1665 2364 4.055360 GTTGGTTTGTGGGAATAAACTGC 58.945 43.478 0.00 0.00 37.07 4.40
1666 2365 4.295051 CGTTGGTTTGTGGGAATAAACTG 58.705 43.478 0.00 0.00 37.07 3.16
1667 2366 3.319689 CCGTTGGTTTGTGGGAATAAACT 59.680 43.478 0.00 0.00 37.07 2.66
1668 2367 3.644823 CCGTTGGTTTGTGGGAATAAAC 58.355 45.455 0.00 0.00 36.35 2.01
1669 2368 2.036089 GCCGTTGGTTTGTGGGAATAAA 59.964 45.455 0.00 0.00 0.00 1.40
1670 2369 1.614413 GCCGTTGGTTTGTGGGAATAA 59.386 47.619 0.00 0.00 0.00 1.40
1671 2370 1.202952 AGCCGTTGGTTTGTGGGAATA 60.203 47.619 0.00 0.00 0.00 1.75
1672 2371 0.469144 AGCCGTTGGTTTGTGGGAAT 60.469 50.000 0.00 0.00 0.00 3.01
1673 2372 0.684805 AAGCCGTTGGTTTGTGGGAA 60.685 50.000 0.00 0.00 0.00 3.97
1674 2373 1.076632 AAGCCGTTGGTTTGTGGGA 60.077 52.632 0.00 0.00 0.00 4.37
1675 2374 1.067250 CAAGCCGTTGGTTTGTGGG 59.933 57.895 4.46 0.00 38.74 4.61
1676 2375 0.673437 ATCAAGCCGTTGGTTTGTGG 59.327 50.000 11.41 0.00 42.99 4.17
1677 2376 2.507339 AATCAAGCCGTTGGTTTGTG 57.493 45.000 11.41 0.00 42.99 3.33
1678 2377 3.634910 AGTTAATCAAGCCGTTGGTTTGT 59.365 39.130 11.41 0.00 42.99 2.83
1679 2378 4.237349 AGTTAATCAAGCCGTTGGTTTG 57.763 40.909 6.12 6.12 43.66 2.93
1680 2379 4.822896 TGTAGTTAATCAAGCCGTTGGTTT 59.177 37.500 0.00 0.00 38.08 3.27
1681 2380 4.391155 TGTAGTTAATCAAGCCGTTGGTT 58.609 39.130 0.00 0.00 40.30 3.67
1682 2381 4.010667 TGTAGTTAATCAAGCCGTTGGT 57.989 40.909 0.00 0.00 34.09 3.67
1683 2382 4.260212 CGATGTAGTTAATCAAGCCGTTGG 60.260 45.833 0.00 0.00 34.09 3.77
1684 2383 4.328983 ACGATGTAGTTAATCAAGCCGTTG 59.671 41.667 0.00 0.00 34.67 4.10
1685 2384 4.501071 ACGATGTAGTTAATCAAGCCGTT 58.499 39.130 0.00 0.00 0.00 4.44
1686 2385 4.110482 GACGATGTAGTTAATCAAGCCGT 58.890 43.478 0.00 0.00 0.00 5.68
1687 2386 3.489785 GGACGATGTAGTTAATCAAGCCG 59.510 47.826 0.00 0.00 0.00 5.52
1688 2387 4.270325 GTGGACGATGTAGTTAATCAAGCC 59.730 45.833 0.00 0.00 0.00 4.35
1689 2388 4.868171 TGTGGACGATGTAGTTAATCAAGC 59.132 41.667 0.00 0.00 0.00 4.01
1690 2389 6.961359 TTGTGGACGATGTAGTTAATCAAG 57.039 37.500 0.00 0.00 0.00 3.02
1691 2390 7.201487 CGATTTGTGGACGATGTAGTTAATCAA 60.201 37.037 0.00 0.00 0.00 2.57
1692 2391 6.254804 CGATTTGTGGACGATGTAGTTAATCA 59.745 38.462 0.00 0.00 0.00 2.57
1693 2392 6.255020 ACGATTTGTGGACGATGTAGTTAATC 59.745 38.462 0.00 0.00 0.00 1.75
1694 2393 6.035650 CACGATTTGTGGACGATGTAGTTAAT 59.964 38.462 0.00 0.00 45.21 1.40
1695 2394 5.346551 CACGATTTGTGGACGATGTAGTTAA 59.653 40.000 0.00 0.00 45.21 2.01
1696 2395 4.860352 CACGATTTGTGGACGATGTAGTTA 59.140 41.667 0.00 0.00 45.21 2.24
1697 2396 3.678072 CACGATTTGTGGACGATGTAGTT 59.322 43.478 0.00 0.00 45.21 2.24
1698 2397 3.250744 CACGATTTGTGGACGATGTAGT 58.749 45.455 0.00 0.00 45.21 2.73
1699 2398 3.907178 CACGATTTGTGGACGATGTAG 57.093 47.619 0.00 0.00 45.21 2.74
1710 2409 1.069973 CGACACATGTGCACGATTTGT 60.070 47.619 29.31 14.93 36.39 2.83
1711 2410 1.069973 ACGACACATGTGCACGATTTG 60.070 47.619 35.19 19.87 37.22 2.32
1712 2411 1.069973 CACGACACATGTGCACGATTT 60.070 47.619 35.19 20.28 37.22 2.17
1713 2412 0.512518 CACGACACATGTGCACGATT 59.487 50.000 35.19 20.81 37.22 3.34
1714 2413 0.599991 ACACGACACATGTGCACGAT 60.600 50.000 35.19 25.06 41.03 3.73
1715 2414 1.227118 ACACGACACATGTGCACGA 60.227 52.632 35.19 1.58 41.03 4.35
1716 2415 1.083465 CACACGACACATGTGCACG 60.083 57.895 30.41 30.41 40.94 5.34
1717 2416 4.899526 CACACGACACATGTGCAC 57.100 55.556 25.68 17.88 40.94 4.57
1721 2420 3.586100 TGCTATACACACGACACATGT 57.414 42.857 0.00 0.00 0.00 3.21
1722 2421 3.180387 CGATGCTATACACACGACACATG 59.820 47.826 0.00 0.00 34.64 3.21
1723 2422 3.181490 ACGATGCTATACACACGACACAT 60.181 43.478 0.00 0.00 35.99 3.21
1724 2423 2.162809 ACGATGCTATACACACGACACA 59.837 45.455 0.00 0.00 35.99 3.72
1725 2424 2.793933 ACGATGCTATACACACGACAC 58.206 47.619 0.00 0.00 35.99 3.67
1726 2425 3.119779 TCAACGATGCTATACACACGACA 60.120 43.478 0.00 0.00 35.99 4.35
1727 2426 3.431856 TCAACGATGCTATACACACGAC 58.568 45.455 0.00 0.00 35.99 4.34
1728 2427 3.768468 TCAACGATGCTATACACACGA 57.232 42.857 0.00 0.00 35.99 4.35
1729 2428 4.833469 TTTCAACGATGCTATACACACG 57.167 40.909 0.00 0.00 37.41 4.49
1730 2429 6.479001 AGGTATTTCAACGATGCTATACACAC 59.521 38.462 14.31 3.46 30.50 3.82
1731 2430 6.578944 AGGTATTTCAACGATGCTATACACA 58.421 36.000 14.31 0.00 30.50 3.72
1732 2431 8.648097 CATAGGTATTTCAACGATGCTATACAC 58.352 37.037 14.31 7.63 30.50 2.90
1733 2432 7.330946 GCATAGGTATTTCAACGATGCTATACA 59.669 37.037 14.31 1.98 36.87 2.29
1734 2433 7.330946 TGCATAGGTATTTCAACGATGCTATAC 59.669 37.037 8.49 0.00 38.87 1.47
1735 2434 7.382898 TGCATAGGTATTTCAACGATGCTATA 58.617 34.615 8.49 0.00 38.87 1.31
1736 2435 6.230472 TGCATAGGTATTTCAACGATGCTAT 58.770 36.000 8.49 0.00 38.87 2.97
1737 2436 5.606505 TGCATAGGTATTTCAACGATGCTA 58.393 37.500 8.49 0.00 38.87 3.49
1738 2437 4.450976 TGCATAGGTATTTCAACGATGCT 58.549 39.130 8.49 0.00 38.87 3.79
1739 2438 4.811555 TGCATAGGTATTTCAACGATGC 57.188 40.909 0.00 0.00 38.71 3.91
1740 2439 6.603237 TCTTGCATAGGTATTTCAACGATG 57.397 37.500 0.00 0.00 0.00 3.84
1741 2440 6.146184 CGATCTTGCATAGGTATTTCAACGAT 59.854 38.462 0.00 0.00 0.00 3.73
1742 2441 5.462068 CGATCTTGCATAGGTATTTCAACGA 59.538 40.000 0.00 0.00 0.00 3.85
1743 2442 5.333339 CCGATCTTGCATAGGTATTTCAACG 60.333 44.000 0.00 0.00 0.00 4.10
1744 2443 5.758296 TCCGATCTTGCATAGGTATTTCAAC 59.242 40.000 0.00 0.00 0.00 3.18
1745 2444 5.758296 GTCCGATCTTGCATAGGTATTTCAA 59.242 40.000 0.00 0.00 0.00 2.69
1746 2445 5.297547 GTCCGATCTTGCATAGGTATTTCA 58.702 41.667 0.00 0.00 0.00 2.69
1747 2446 4.386049 CGTCCGATCTTGCATAGGTATTTC 59.614 45.833 0.00 0.00 0.00 2.17
1748 2447 4.038763 TCGTCCGATCTTGCATAGGTATTT 59.961 41.667 0.00 0.00 0.00 1.40
1749 2448 3.572682 TCGTCCGATCTTGCATAGGTATT 59.427 43.478 0.00 0.00 0.00 1.89
1750 2449 3.154710 TCGTCCGATCTTGCATAGGTAT 58.845 45.455 0.00 0.00 0.00 2.73
1751 2450 2.578786 TCGTCCGATCTTGCATAGGTA 58.421 47.619 0.00 0.00 0.00 3.08
1752 2451 1.399714 TCGTCCGATCTTGCATAGGT 58.600 50.000 0.00 0.00 0.00 3.08
1753 2452 2.600731 GATCGTCCGATCTTGCATAGG 58.399 52.381 19.53 0.00 45.42 2.57
1770 2469 0.749649 AGAGACGTGCATGGGAGATC 59.250 55.000 11.36 0.00 0.00 2.75
1831 2530 9.783081 AAGCAAAAATTCCATCTAAGAAACATT 57.217 25.926 0.00 0.00 0.00 2.71
1838 2537 8.782339 AAATCCAAGCAAAAATTCCATCTAAG 57.218 30.769 0.00 0.00 0.00 2.18
1849 2548 5.588246 GGGTGAAAGAAAATCCAAGCAAAAA 59.412 36.000 0.00 0.00 0.00 1.94
1895 2594 3.127895 AGAATCACCGACGAGAAGAAGAG 59.872 47.826 0.00 0.00 0.00 2.85
1936 2637 2.112475 TAACAACACATTGCACACGC 57.888 45.000 0.00 0.00 39.66 5.34
1937 2638 2.979151 CCATAACAACACATTGCACACG 59.021 45.455 0.00 0.00 39.66 4.49
2004 2705 3.297620 GCCTGCCCAGTGGTTGTG 61.298 66.667 8.74 0.00 0.00 3.33
2200 2902 6.560003 TCCCAGCAGTGATATCTTTTAGAA 57.440 37.500 3.98 0.00 0.00 2.10
2273 2975 7.009179 ACATAACTCATCTCCAAAGTTCTGA 57.991 36.000 6.80 0.00 35.08 3.27
2291 2993 4.723248 GTTTGCAGGTTAGCAGACATAAC 58.277 43.478 4.95 0.00 45.75 1.89
2308 3010 4.606457 AAGAACTATCTGCGATGTTTGC 57.394 40.909 0.00 0.00 35.59 3.68
2777 3481 8.105829 AGTCATTGATCAGTTCCAGAATAAACT 58.894 33.333 0.00 0.00 36.16 2.66
2992 3696 3.508793 CACCATTCTCACCTTCAGCATTT 59.491 43.478 0.00 0.00 0.00 2.32
3208 3912 6.705782 AGCTTTTATTAATGACGACGACATG 58.294 36.000 13.32 0.00 0.00 3.21
3209 3913 6.903883 AGCTTTTATTAATGACGACGACAT 57.096 33.333 6.99 6.99 0.00 3.06
3211 3915 9.144085 CAAATAGCTTTTATTAATGACGACGAC 57.856 33.333 0.00 0.00 0.00 4.34
3212 3916 8.875803 ACAAATAGCTTTTATTAATGACGACGA 58.124 29.630 0.00 0.00 0.00 4.20
3213 3917 9.485591 AACAAATAGCTTTTATTAATGACGACG 57.514 29.630 0.00 0.00 0.00 5.12
3582 4381 2.813172 CCCCTTTAGCCGACGTTTTTAA 59.187 45.455 0.00 0.00 0.00 1.52
3592 4391 1.138464 GGACTCTTACCCCTTTAGCCG 59.862 57.143 0.00 0.00 0.00 5.52
3821 4761 6.421377 TCATCAAATGAACAGTTCCATACG 57.579 37.500 10.93 0.00 36.11 3.06
3847 4787 5.374921 AGGAATGAAGGCTAAGACATGATG 58.625 41.667 0.00 0.00 0.00 3.07
3927 4868 2.952978 AGATACAGCCGGTACTTCTGAG 59.047 50.000 12.31 0.00 34.07 3.35
3985 4926 1.002430 CCTCCAAGTGCAGCAACTAGA 59.998 52.381 0.00 0.00 0.00 2.43
3988 4929 0.183492 TTCCTCCAAGTGCAGCAACT 59.817 50.000 0.00 0.00 0.00 3.16
4333 5274 4.398319 CCCTATTTGTAGTAGCCAATGGG 58.602 47.826 0.00 0.00 37.18 4.00
4343 5284 4.532521 AGACTGAACTGCCCTATTTGTAGT 59.467 41.667 0.00 0.00 0.00 2.73
4592 5533 5.569355 TGTAATCTGATTTGATGGTGGTGT 58.431 37.500 8.38 0.00 0.00 4.16
5073 6014 5.678583 AGTCAACATTACTATGCAGATGCT 58.321 37.500 6.35 0.00 42.66 3.79
5375 6316 6.231211 AGATTAAGTAAACAGTGGGAGTGTG 58.769 40.000 0.00 0.00 30.99 3.82
5533 6474 2.348104 CCCCAGTCCGTGTCGATGA 61.348 63.158 0.00 0.00 0.00 2.92
5534 6475 2.184322 CCCCAGTCCGTGTCGATG 59.816 66.667 0.00 0.00 0.00 3.84
5535 6476 3.075005 CCCCCAGTCCGTGTCGAT 61.075 66.667 0.00 0.00 0.00 3.59
5567 6511 1.420138 GGGACTTGGTGAAAGGAGACA 59.580 52.381 0.00 0.00 40.51 3.41
6020 6978 3.502979 GGTGCCTATGTTAACAAAACGGA 59.497 43.478 13.23 0.00 0.00 4.69
6023 6981 5.240844 AGTCAGGTGCCTATGTTAACAAAAC 59.759 40.000 13.23 6.66 0.00 2.43
6069 7027 8.349568 ACCAGAATTCAAGGGAACTAATAAAC 57.650 34.615 17.93 0.00 42.68 2.01
6070 7028 8.167392 TGACCAGAATTCAAGGGAACTAATAAA 58.833 33.333 17.93 0.00 42.68 1.40
6071 7029 7.695055 TGACCAGAATTCAAGGGAACTAATAA 58.305 34.615 17.93 0.00 42.68 1.40
6132 7093 9.480053 AATAAGTGACTTAACTTTGCGTTACTA 57.520 29.630 9.35 0.00 40.77 1.82
6137 7098 6.915843 CCAAAATAAGTGACTTAACTTTGCGT 59.084 34.615 23.89 2.66 40.77 5.24
6139 7100 7.381408 GTCCCAAAATAAGTGACTTAACTTTGC 59.619 37.037 23.89 14.46 40.77 3.68
6177 7138 9.137459 ACTCATACTATTGTTGCTACATACTCT 57.863 33.333 0.81 0.00 33.44 3.24
6258 7219 7.920151 GCTGCAATTTTTCCCTTTAAAAACAAT 59.080 29.630 0.00 0.00 40.18 2.71
6354 7315 2.122783 TTTCGGTCCAAATGCCCTAG 57.877 50.000 0.00 0.00 0.00 3.02
6447 7408 5.937540 TGCGGCTACTGTATATTTGCATAAT 59.062 36.000 0.00 0.00 0.00 1.28
6534 7495 3.114616 CAGAGGCGGCGACAACAG 61.115 66.667 18.30 1.07 0.00 3.16
6578 7539 1.303317 GTGGCTTCGACAATGGGGT 60.303 57.895 0.00 0.00 0.00 4.95
6581 7542 3.039202 GCGGTGGCTTCGACAATGG 62.039 63.158 4.42 0.00 35.83 3.16
6608 7569 4.473520 AATGGAGCGGCGACCAGG 62.474 66.667 24.70 0.00 39.62 4.45
6609 7570 3.197790 CAATGGAGCGGCGACCAG 61.198 66.667 24.70 12.98 39.62 4.00
6610 7571 3.247056 TTCAATGGAGCGGCGACCA 62.247 57.895 23.43 23.43 40.57 4.02
6611 7572 2.435938 TTCAATGGAGCGGCGACC 60.436 61.111 12.98 14.11 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.