AutoCloner

Multiple sequence alignment - TraesCS6A01G145900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6A01G145900	chr6A	100.000	2558	0	0	1	2558	124302398	124304955	0.000000e+00	4724.0
1	TraesCS6A01G145900	chr6A	95.055	182	8	1	1665	1845	531395982	531396163	4.170000e-73	285.0
2	TraesCS6A01G145900	chr6A	88.312	77	9	0	2431	2507	592564721	592564645	2.710000e-15	93.5
3	TraesCS6A01G145900	chr6B	92.274	1139	51	13	548	1671	188683778	188684894	0.000000e+00	1581.0
4	TraesCS6A01G145900	chr6B	93.750	256	11	3	1830	2085	188684894	188685144	1.860000e-101	379.0
5	TraesCS6A01G145900	chr6B	85.946	370	30	10	2	359	188683368	188683727	2.400000e-100	375.0
6	TraesCS6A01G145900	chr6D	90.824	1068	52	27	1	1056	103011659	103012692	0.000000e+00	1387.0
7	TraesCS6A01G145900	chr6D	93.367	588	32	5	1090	1671	103012690	103013276	0.000000e+00	863.0
8	TraesCS6A01G145900	chr6D	95.669	254	9	2	1832	2085	103013275	103013526	8.520000e-110	407.0
9	TraesCS6A01G145900	chr4A	95.359	474	16	4	2088	2558	475550118	475549648	0.000000e+00	749.0
10	TraesCS6A01G145900	chr2B	94.172	429	22	2	2086	2512	55621958	55621531	0.000000e+00	651.0
11	TraesCS6A01G145900	chr5B	93.706	429	24	2	2086	2512	702648945	702648518	7.720000e-180	640.0
12	TraesCS6A01G145900	chr5B	93.473	429	25	2	2086	2512	702800843	702800416	3.590000e-178	634.0
13	TraesCS6A01G145900	chr5B	95.977	174	6	1	1660	1833	656461948	656461776	5.390000e-72	281.0
14	TraesCS6A01G145900	chr7A	96.825	315	10	0	2244	2558	49182847	49182533	6.270000e-146	527.0
15	TraesCS6A01G145900	chr7A	92.941	170	11	1	2086	2254	49183344	49183175	1.970000e-61	246.0
16	TraesCS6A01G145900	chrUn	96.471	170	6	0	1665	1834	75274360	75274529	5.390000e-72	281.0
17	TraesCS6A01G145900	chrUn	85.542	166	21	2	2153	2316	261043890	261043726	1.220000e-38	171.0
18	TraesCS6A01G145900	chr4B	94.944	178	9	0	1667	1844	143898151	143897974	1.940000e-71	279.0
19	TraesCS6A01G145900	chr4B	85.532	235	30	4	2085	2316	19857912	19858145	2.540000e-60	243.0
20	TraesCS6A01G145900	chr4B	82.759	232	34	5	2086	2313	402909869	402910098	4.320000e-48	202.0
21	TraesCS6A01G145900	chr3A	94.915	177	7	2	1658	1833	370246067	370245892	2.510000e-70	276.0
22	TraesCS6A01G145900	chr3A	94.886	176	8	1	1669	1844	12673178	12673004	9.020000e-70	274.0
23	TraesCS6A01G145900	chr3A	94.886	176	8	1	1669	1844	12675362	12675188	9.020000e-70	274.0
24	TraesCS6A01G145900	chr3A	94.413	179	8	1	1656	1834	80489278	80489102	9.020000e-70	274.0
25	TraesCS6A01G145900	chr2A	95.402	174	6	2	1663	1836	478761353	478761524	2.510000e-70	276.0
26	TraesCS6A01G145900	chr7D	85.169	236	33	1	2083	2316	265254598	265254833	9.150000e-60	241.0
27	TraesCS6A01G145900	chr7D	85.938	128	18	0	2431	2558	265254972	265255099	1.230000e-28	137.0
28	TraesCS6A01G145900	chr5A	82.353	238	37	2	2314	2546	594386711	594386948	4.320000e-48	202.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6A01G145900	chr6A	124302398	124304955	2557	False	4724.000000	4724	100.000000	1	2558	1	chr6A.!!$F1	2557
1	TraesCS6A01G145900	chr6B	188683368	188685144	1776	False	778.333333	1581	90.656667	2	2085	3	chr6B.!!$F1	2083
2	TraesCS6A01G145900	chr6D	103011659	103013526	1867	False	885.666667	1387	93.286667	1	2085	3	chr6D.!!$F1	2084
3	TraesCS6A01G145900	chr7A	49182533	49183344	811	True	386.500000	527	94.883000	2086	2558	2	chr7A.!!$R1	472
4	TraesCS6A01G145900	chr3A	12673004	12675362	2358	True	274.000000	274	94.886000	1669	1844	2	chr3A.!!$R3	175

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
968	991	0.810031	ACACGGCACACAGAACACTC	60.81	55.0	0.0	0.0	0.0	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1965	3477	0.896226	AGGACCGACTCCAAAGCTAC	59.104	55.0	0.0	0.0	42.46	3.58	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	3.180507	AGAGATCAGAGGAAGGTGCTTT	58.819	45.455	0.00	0.00	0.00	3.51
23	24	3.055240	AGAGATCAGAGGAAGGTGCTTTG	60.055	47.826	0.00	0.00	0.00	2.77
147	148	2.037902	TGGACTGATTTCGCAACACCTA	59.962	45.455	0.00	0.00	0.00	3.08
163	164	3.573110	ACACCTACAGTCCTAGTTCACAC	59.427	47.826	0.00	0.00	0.00	3.82
203	214	4.618920	AAACCCGTGTGATCTACTCTTT	57.381	40.909	0.00	0.00	0.00	2.52
204	215	3.870633	ACCCGTGTGATCTACTCTTTC	57.129	47.619	0.00	0.00	0.00	2.62
205	216	3.432378	ACCCGTGTGATCTACTCTTTCT	58.568	45.455	0.00	0.00	0.00	2.52
206	217	3.193691	ACCCGTGTGATCTACTCTTTCTG	59.806	47.826	0.00	0.00	0.00	3.02
234	245	3.058639	GCTCAAGCACTTCTTTGTTCGAT	60.059	43.478	0.00	0.00	41.59	3.59
235	246	4.461405	CTCAAGCACTTCTTTGTTCGATG	58.539	43.478	0.00	0.00	31.27	3.84
248	259	3.734463	TGTTCGATGCTACAACTTGGAA	58.266	40.909	0.00	0.00	0.00	3.53
278	289	5.381174	TGCCACTGAAATCTGAAATTGAG	57.619	39.130	0.00	0.00	0.00	3.02
312	323	4.044336	TGTGCACTTTGTTCCAGAATTG	57.956	40.909	19.41	0.00	0.00	2.32
433	444	2.094182	CGTGTACTATGCTTGTCACCCT	60.094	50.000	0.00	0.00	0.00	4.34
434	445	3.522553	GTGTACTATGCTTGTCACCCTC	58.477	50.000	0.00	0.00	0.00	4.30
456	472	8.071177	CCTCTGGGAGTTTGATAAATTTGATT	57.929	34.615	0.00	0.00	33.58	2.57
457	473	7.977853	CCTCTGGGAGTTTGATAAATTTGATTG	59.022	37.037	0.00	0.00	33.58	2.67
458	474	8.648698	TCTGGGAGTTTGATAAATTTGATTGA	57.351	30.769	0.00	0.00	0.00	2.57
459	475	9.258629	TCTGGGAGTTTGATAAATTTGATTGAT	57.741	29.630	0.00	0.00	0.00	2.57
473	489	5.852282	TTGATTGATCAGTGAGGATCGTA	57.148	39.130	0.00	0.00	45.31	3.43
475	491	7.524717	TTGATTGATCAGTGAGGATCGTATA	57.475	36.000	0.00	0.00	45.31	1.47
476	492	6.914259	TGATTGATCAGTGAGGATCGTATAC	58.086	40.000	0.00	0.00	45.31	1.47
477	493	6.717084	TGATTGATCAGTGAGGATCGTATACT	59.283	38.462	0.00	0.00	45.31	2.12
478	494	6.561737	TTGATCAGTGAGGATCGTATACTC	57.438	41.667	0.00	1.41	45.31	2.59
479	495	4.691216	TGATCAGTGAGGATCGTATACTCG	59.309	45.833	0.00	0.00	43.47	4.18
480	496	4.069300	TCAGTGAGGATCGTATACTCGT	57.931	45.455	0.56	0.00	43.47	4.18
481	497	5.205759	TCAGTGAGGATCGTATACTCGTA	57.794	43.478	0.56	0.00	43.47	3.43
482	498	5.791666	TCAGTGAGGATCGTATACTCGTAT	58.208	41.667	0.56	0.00	43.47	3.06
483	499	5.638234	TCAGTGAGGATCGTATACTCGTATG	59.362	44.000	0.56	2.95	43.47	2.39
484	500	4.392445	AGTGAGGATCGTATACTCGTATGC	59.608	45.833	0.56	0.00	43.47	3.14
485	501	3.688185	TGAGGATCGTATACTCGTATGCC	59.312	47.826	0.56	0.00	43.47	4.40
486	502	3.940221	GAGGATCGTATACTCGTATGCCT	59.060	47.826	0.56	0.00	28.97	4.75
487	503	3.690139	AGGATCGTATACTCGTATGCCTG	59.310	47.826	0.56	0.00	0.00	4.85
488	504	3.439476	GGATCGTATACTCGTATGCCTGT	59.561	47.826	0.56	0.00	0.00	4.00
489	505	4.082895	GGATCGTATACTCGTATGCCTGTT	60.083	45.833	0.56	0.00	0.00	3.16
490	506	5.122869	GGATCGTATACTCGTATGCCTGTTA	59.877	44.000	0.56	0.00	0.00	2.41
491	507	5.348418	TCGTATACTCGTATGCCTGTTAC	57.652	43.478	0.56	0.00	0.00	2.50
492	508	5.059161	TCGTATACTCGTATGCCTGTTACT	58.941	41.667	0.56	0.00	0.00	2.24
493	509	5.528690	TCGTATACTCGTATGCCTGTTACTT	59.471	40.000	0.56	0.00	0.00	2.24
494	510	6.705825	TCGTATACTCGTATGCCTGTTACTTA	59.294	38.462	0.56	0.00	0.00	2.24
495	511	6.794158	CGTATACTCGTATGCCTGTTACTTAC	59.206	42.308	0.56	0.00	0.00	2.34
496	512	6.704289	ATACTCGTATGCCTGTTACTTACA	57.296	37.500	0.00	0.00	34.95	2.41
527	543	7.996066	TGTGGTAAGATTGCTTTTATATAGGCA	59.004	33.333	0.00	0.00	35.56	4.75
576	595	7.713073	TGACGACCTATATTATGCATTTTGACA	59.287	33.333	3.54	0.00	0.00	3.58
588	607	2.245795	TTTTGACATGCATTCTCGCG	57.754	45.000	0.00	0.00	33.35	5.87
691	713	4.934797	ATCCTAATCCCATGTACCCATG	57.065	45.455	0.00	0.00	46.65	3.66
718	740	6.859112	TGCCTTATCTCCTCAAGATATACC	57.141	41.667	0.00	0.00	44.59	2.73
756	779	1.337150	CACACGAACGCGATCTTCG	59.663	57.895	23.42	23.42	44.90	3.79
968	991	0.810031	ACACGGCACACAGAACACTC	60.810	55.000	0.00	0.00	0.00	3.51
976	999	1.485066	ACACAGAACACTCCTCCGTTT	59.515	47.619	0.00	0.00	0.00	3.60
1034	1057	2.385417	AGAAGAAGGGAGGAGGAGAAGT	59.615	50.000	0.00	0.00	0.00	3.01
1035	1058	3.178046	GAAGAAGGGAGGAGGAGAAGTT	58.822	50.000	0.00	0.00	0.00	2.66
1125	1148	2.123251	GAGGGATCTCTCCGGCCA	60.123	66.667	11.95	0.00	43.11	5.36
1357	1392	1.585006	CTCGGACAGCACGGTTACT	59.415	57.895	0.00	0.00	0.00	2.24
1476	1511	4.168291	GAGGAGGAAGGCTGGCGG	62.168	72.222	0.00	0.00	0.00	6.13
1521	1556	0.107993	ACTGTGGTGATGGCGATCAG	60.108	55.000	12.10	2.62	39.36	2.90
1529	1564	3.804153	ATGGCGATCAGGAGCTGCG	62.804	63.158	0.00	0.00	0.00	5.18
1568	1603	6.017275	ACGCTAAAGCTGTAATCGTAGTAGAT	60.017	38.462	8.61	0.00	39.32	1.98
1576	1611	6.418226	GCTGTAATCGTAGTAGATCTTTGGTG	59.582	42.308	0.00	0.00	0.00	4.17
1602	1638	8.645110	GCTACTACCCATGGATTAAGTACTTAA	58.355	37.037	26.07	26.07	39.12	1.85
1604	1640	8.849543	ACTACCCATGGATTAAGTACTTAAGA	57.150	34.615	27.21	16.74	38.30	2.10
1605	1641	8.925338	ACTACCCATGGATTAAGTACTTAAGAG	58.075	37.037	27.21	16.50	38.30	2.85
1677	1714	5.024118	AGCAACACATAGTACTACTCCCTT	58.976	41.667	4.31	0.00	0.00	3.95
1682	1719	5.713861	ACACATAGTACTACTCCCTTCGTTT	59.286	40.000	4.31	0.00	0.00	3.60
1693	1730	9.247861	ACTACTCCCTTCGTTTCTAAATACTTA	57.752	33.333	0.00	0.00	0.00	2.24
1836	1873	2.368311	AGGAACGGAGGGAGTAGATC	57.632	55.000	0.00	0.00	0.00	2.75
1913	3425	9.853921	GCAAAAGAAAAGAATACACTGATTTTG	57.146	29.630	0.00	0.00	37.12	2.44
1965	3477	3.529634	TGTGCGGAAAACTACAAATCG	57.470	42.857	0.00	0.00	0.00	3.34
2050	3562	2.749621	GCAAACATGGTGGTCTTAGAGG	59.250	50.000	0.00	0.00	0.00	3.69
2078	3590	4.823442	CCAATGGATGACTTATTGCTGCTA	59.177	41.667	0.00	0.00	32.01	3.49
2089	3601	5.533903	ACTTATTGCTGCTATGAAATCAGGG	59.466	40.000	6.84	0.00	0.00	4.45
2092	3604	1.233019	CTGCTATGAAATCAGGGGCG	58.767	55.000	0.00	0.00	0.00	6.13
2132	3644	4.321452	CCATTGGGTTCAGTCATTGACTTG	60.321	45.833	16.64	12.06	41.37	3.16
2136	3648	5.630121	TGGGTTCAGTCATTGACTTGTTAT	58.370	37.500	16.64	0.00	41.37	1.89
2279	4308	5.519722	ACATTAAAAACTGAAAGAGTGCGG	58.480	37.500	0.00	0.00	37.43	5.69
2280	4309	2.492019	AAAAACTGAAAGAGTGCGGC	57.508	45.000	0.00	0.00	37.43	6.53
2451	4480	2.457813	TGTTGCTTGCCCCATCATAT	57.542	45.000	0.00	0.00	0.00	1.78
2466	4495	6.176183	CCCATCATATTATTGTCCTCTGACC	58.824	44.000	0.00	0.00	41.01	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
22	23	4.019321	ACTTCAAAGGCATACTAGAAGGCA	60.019	41.667	0.00	0.00	41.81	4.75
23	24	4.518249	ACTTCAAAGGCATACTAGAAGGC	58.482	43.478	0.00	0.00	41.81	4.35
27	28	5.104900	GGAAGGACTTCAAAGGCATACTAGA	60.105	44.000	13.51	0.00	41.20	2.43
28	29	5.104735	AGGAAGGACTTCAAAGGCATACTAG	60.105	44.000	13.51	0.00	41.20	2.57
29	30	4.783227	AGGAAGGACTTCAAAGGCATACTA	59.217	41.667	13.51	0.00	41.20	1.82
30	31	3.589288	AGGAAGGACTTCAAAGGCATACT	59.411	43.478	13.51	0.00	41.20	2.12
31	32	3.691609	CAGGAAGGACTTCAAAGGCATAC	59.308	47.826	13.51	0.00	41.20	2.39
147	148	4.152647	TCTCATGTGTGAACTAGGACTGT	58.847	43.478	0.00	0.00	33.05	3.55
163	164	6.389906	GGGTTTTAGGTTGAACAATCTCATG	58.610	40.000	3.49	0.00	33.15	3.07
234	245	6.155827	GCATGTTAAATTCCAAGTTGTAGCA	58.844	36.000	1.45	0.00	0.00	3.49
235	246	5.576774	GGCATGTTAAATTCCAAGTTGTAGC	59.423	40.000	1.45	0.00	0.00	3.58
248	259	6.839124	TCAGATTTCAGTGGCATGTTAAAT	57.161	33.333	0.00	0.00	0.00	1.40
312	323	2.125188	GCTCAGACTGGAGGCTGC	60.125	66.667	4.46	0.00	35.41	5.25
433	444	8.648698	TCAATCAAATTTATCAAACTCCCAGA	57.351	30.769	0.00	0.00	0.00	3.86
434	445	9.525409	GATCAATCAAATTTATCAAACTCCCAG	57.475	33.333	0.00	0.00	0.00	4.45
456	472	4.691216	CGAGTATACGATCCTCACTGATCA	59.309	45.833	0.00	0.00	41.00	2.92
457	473	4.691685	ACGAGTATACGATCCTCACTGATC	59.308	45.833	0.00	0.00	38.21	2.92
458	474	4.643463	ACGAGTATACGATCCTCACTGAT	58.357	43.478	0.00	0.00	37.03	2.90
459	475	4.069300	ACGAGTATACGATCCTCACTGA	57.931	45.455	0.00	0.00	37.03	3.41
463	479	3.688185	GGCATACGAGTATACGATCCTCA	59.312	47.826	0.00	0.00	37.03	3.86
473	489	6.704289	TGTAAGTAACAGGCATACGAGTAT	57.296	37.500	0.00	0.00	33.01	2.12
475	491	5.395682	TTGTAAGTAACAGGCATACGAGT	57.604	39.130	0.00	0.00	39.87	4.18
476	492	6.715344	TTTTGTAAGTAACAGGCATACGAG	57.285	37.500	0.00	0.00	39.87	4.18
477	493	7.173562	ACAATTTTGTAAGTAACAGGCATACGA	59.826	33.333	0.00	0.00	40.16	3.43
478	494	7.270365	CACAATTTTGTAAGTAACAGGCATACG	59.730	37.037	0.00	0.00	39.91	3.06
479	495	7.540745	CCACAATTTTGTAAGTAACAGGCATAC	59.459	37.037	0.00	0.00	39.91	2.39
480	496	7.231722	ACCACAATTTTGTAAGTAACAGGCATA	59.768	33.333	0.00	0.00	39.91	3.14
481	497	6.041523	ACCACAATTTTGTAAGTAACAGGCAT	59.958	34.615	0.00	0.00	39.91	4.40
482	498	5.361285	ACCACAATTTTGTAAGTAACAGGCA	59.639	36.000	0.00	0.00	39.91	4.75
483	499	5.838529	ACCACAATTTTGTAAGTAACAGGC	58.161	37.500	0.00	0.00	39.91	4.85
484	500	8.842280	TCTTACCACAATTTTGTAAGTAACAGG	58.158	33.333	13.88	3.63	41.27	4.00
488	504	9.685828	GCAATCTTACCACAATTTTGTAAGTAA	57.314	29.630	13.88	13.35	41.27	2.24
489	505	9.073475	AGCAATCTTACCACAATTTTGTAAGTA	57.927	29.630	13.88	0.00	41.27	2.24
490	506	7.951591	AGCAATCTTACCACAATTTTGTAAGT	58.048	30.769	13.88	0.34	41.27	2.24
491	507	8.816640	AAGCAATCTTACCACAATTTTGTAAG	57.183	30.769	10.30	10.30	39.91	2.34
492	508	9.606631	AAAAGCAATCTTACCACAATTTTGTAA	57.393	25.926	0.00	0.00	33.94	2.41
494	510	9.777297	ATAAAAGCAATCTTACCACAATTTTGT	57.223	25.926	0.00	0.00	35.20	2.83
527	543	0.178992	TAGGCACAGTGCTTTGGCTT	60.179	50.000	24.75	5.32	45.81	4.35
576	595	1.091771	CAAGGGTCGCGAGAATGCAT	61.092	55.000	10.24	0.00	45.01	3.96
579	598	2.225068	ATACAAGGGTCGCGAGAATG	57.775	50.000	10.24	9.38	45.01	2.67
585	604	2.035449	TCATTCCTATACAAGGGTCGCG	59.965	50.000	0.00	0.00	46.55	5.87
588	607	6.238759	GCATGTTTCATTCCTATACAAGGGTC	60.239	42.308	0.00	0.00	46.55	4.46
691	713	4.744795	TCTTGAGGAGATAAGGCAAGTC	57.255	45.455	0.00	0.00	37.71	3.01
718	740	5.814705	GTGTGGGAGATCTCATTTTCTACTG	59.185	44.000	23.85	0.00	0.00	2.74
756	779	4.980805	TGGTCGGCTGACGCAACC	62.981	66.667	19.26	6.82	46.49	3.77
791	814	1.289109	TTTACGTGCTCTGCTTCCGC	61.289	55.000	0.00	0.00	0.00	5.54
800	823	2.349532	GCAGTGGTTTCTTTACGTGCTC	60.350	50.000	0.00	0.00	0.00	4.26
896	919	2.618241	TGTATGATTTGAGCGAATGGCC	59.382	45.455	0.00	0.00	45.17	5.36
976	999	0.988832	AAGCAAGATACCAACCGGGA	59.011	50.000	6.32	0.00	41.15	5.14
1357	1392	4.467084	GCCGTGGATGGCGAAGGA	62.467	66.667	0.00	0.00	46.75	3.36
1529	1564	2.080286	TAGCGTCAAGTCAAGCTTCC	57.920	50.000	0.00	0.00	40.73	3.46
1568	1603	2.238646	CCATGGGTAGTAGCACCAAAGA	59.761	50.000	2.85	0.00	40.65	2.52
1576	1611	6.667558	AGTACTTAATCCATGGGTAGTAGC	57.332	41.667	13.02	5.81	0.00	3.58
1602	1638	7.148154	TGCAACAAAACTATTTACACACACTCT	60.148	33.333	0.00	0.00	0.00	3.24
1603	1639	6.970043	TGCAACAAAACTATTTACACACACTC	59.030	34.615	0.00	0.00	0.00	3.51
1604	1640	6.857956	TGCAACAAAACTATTTACACACACT	58.142	32.000	0.00	0.00	0.00	3.55
1605	1641	7.513190	TTGCAACAAAACTATTTACACACAC	57.487	32.000	0.00	0.00	0.00	3.82
1693	1730	6.716628	TCACTTGTTGAAATGCCTAGAAAGAT	59.283	34.615	0.00	0.00	0.00	2.40
1919	3431	6.615316	TCAATATCAGTGTATTCTTCCCCTCA	59.385	38.462	0.00	0.00	0.00	3.86
1965	3477	0.896226	AGGACCGACTCCAAAGCTAC	59.104	55.000	0.00	0.00	42.46	3.58
2032	3544	3.370953	GCATCCTCTAAGACCACCATGTT	60.371	47.826	0.00	0.00	0.00	2.71
2038	3550	1.204146	TGGGCATCCTCTAAGACCAC	58.796	55.000	0.00	0.00	0.00	4.16
2050	3562	4.560108	GCAATAAGTCATCCATTGGGCATC	60.560	45.833	2.09	0.00	31.68	3.91
2078	3590	1.152881	GCTCCGCCCCTGATTTCAT	60.153	57.895	0.00	0.00	0.00	2.57
2104	3616	8.345921	AGTCAATGACTGAACCCAATGGTAAAA	61.346	37.037	15.96	0.00	42.35	1.52
2108	3620	3.181429	AGTCAATGACTGAACCCAATGGT	60.181	43.478	15.96	0.00	43.97	3.55
2270	4299	1.447838	CGGTATGTGCCGCACTCTT	60.448	57.895	23.52	11.37	45.47	2.85
2279	4308	1.014352	GTCATCCAACCGGTATGTGC	58.986	55.000	8.00	2.65	0.00	4.57
2280	4309	2.394930	TGTCATCCAACCGGTATGTG	57.605	50.000	8.00	1.67	0.00	3.21
2288	4317	5.813672	CCATTTCATTCAATGTCATCCAACC	59.186	40.000	0.00	0.00	32.95	3.77
2428	4457	1.272369	TGATGGGGCAAGCAACATGTA	60.272	47.619	0.00	0.00	0.00	2.29
2451	4480	6.374333	GCATAAAACAGGTCAGAGGACAATAA	59.626	38.462	0.00	0.00	46.17	1.40
2518	4547	7.433719	TGTTAAGGAAACATCAACAATTTGTCG	59.566	33.333	1.83	0.00	43.22	4.35

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.