Multiple sequence alignment - TraesCS6A01G145400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G145400 chr6A 100.000 1728 0 0 600 2327 123521582 123523309 0.000000e+00 3192.0
1 TraesCS6A01G145400 chr6A 100.000 393 0 0 1 393 123520983 123521375 0.000000e+00 726.0
2 TraesCS6A01G145400 chr6B 89.336 1763 97 34 603 2327 188137592 188139301 0.000000e+00 2130.0
3 TraesCS6A01G145400 chr6D 87.328 1239 61 33 603 1790 102260905 102262098 0.000000e+00 1330.0
4 TraesCS6A01G145400 chr4B 87.059 85 9 2 1812 1896 596642184 596642102 6.850000e-16 95.3
5 TraesCS6A01G145400 chr3D 85.714 84 10 2 1814 1896 7586402 7586320 1.150000e-13 87.9
6 TraesCS6A01G145400 chr3D 90.741 54 5 0 1827 1880 607886314 607886261 3.210000e-09 73.1
7 TraesCS6A01G145400 chr7A 80.000 115 17 5 1082 1190 699766298 699766184 1.920000e-11 80.5
8 TraesCS6A01G145400 chrUn 81.111 90 14 3 1082 1168 77544934 77544845 4.150000e-08 69.4
9 TraesCS6A01G145400 chr7D 81.111 90 14 3 1082 1168 608450318 608450229 4.150000e-08 69.4
10 TraesCS6A01G145400 chr7D 76.866 134 23 7 1081 1207 608487954 608487822 4.150000e-08 69.4
11 TraesCS6A01G145400 chr7D 78.182 110 21 3 1081 1187 607546497 607546388 1.490000e-07 67.6
12 TraesCS6A01G145400 chr7B 81.111 90 14 3 1082 1168 698857425 698857336 4.150000e-08 69.4
13 TraesCS6A01G145400 chr4A 78.378 111 21 3 1080 1187 661973846 661973956 4.150000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G145400 chr6A 123520983 123523309 2326 False 1959 3192 100.000 1 2327 2 chr6A.!!$F1 2326
1 TraesCS6A01G145400 chr6B 188137592 188139301 1709 False 2130 2130 89.336 603 2327 1 chr6B.!!$F1 1724
2 TraesCS6A01G145400 chr6D 102260905 102262098 1193 False 1330 1330 87.328 603 1790 1 chr6D.!!$F1 1187

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.034616 GGGAGCCGAGAGAATCCATG 59.965 60.0 0.0 0.0 37.29 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1533 1561 0.038159 ACTTCGTAGGTGCAGCAGAC 60.038 55.0 19.63 14.19 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.195698 GCGGCTTCACCCATCGTC 61.196 66.667 0.00 0.00 33.26 4.20
25 26 2.511600 CGGCTTCACCCATCGTCC 60.512 66.667 0.00 0.00 33.26 4.79
26 27 2.124695 GGCTTCACCCATCGTCCC 60.125 66.667 0.00 0.00 0.00 4.46
27 28 2.670148 GGCTTCACCCATCGTCCCT 61.670 63.158 0.00 0.00 0.00 4.20
28 29 1.153349 GCTTCACCCATCGTCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
29 30 1.522569 CTTCACCCATCGTCCCTCC 59.477 63.158 0.00 0.00 0.00 4.30
30 31 2.298158 CTTCACCCATCGTCCCTCCG 62.298 65.000 0.00 0.00 0.00 4.63
31 32 3.849951 CACCCATCGTCCCTCCGG 61.850 72.222 0.00 0.00 0.00 5.14
52 53 4.598894 CGGCGATGCAGGAGAGGG 62.599 72.222 0.00 0.00 0.00 4.30
53 54 4.925861 GGCGATGCAGGAGAGGGC 62.926 72.222 0.00 0.00 0.00 5.19
55 56 4.598894 CGATGCAGGAGAGGGCGG 62.599 72.222 0.00 0.00 0.00 6.13
56 57 3.474570 GATGCAGGAGAGGGCGGT 61.475 66.667 0.00 0.00 0.00 5.68
57 58 3.746949 GATGCAGGAGAGGGCGGTG 62.747 68.421 0.00 0.00 0.00 4.94
75 76 3.068064 GGGGGTGATTGTTGGCCG 61.068 66.667 0.00 0.00 0.00 6.13
76 77 3.068064 GGGGTGATTGTTGGCCGG 61.068 66.667 0.00 0.00 0.00 6.13
77 78 3.758931 GGGTGATTGTTGGCCGGC 61.759 66.667 21.18 21.18 0.00 6.13
78 79 4.114997 GGTGATTGTTGGCCGGCG 62.115 66.667 22.54 0.00 0.00 6.46
79 80 4.114997 GTGATTGTTGGCCGGCGG 62.115 66.667 24.35 24.35 0.00 6.13
134 135 4.779733 GGGTGGGGAGCCGAGAGA 62.780 72.222 0.00 0.00 0.00 3.10
135 136 2.683933 GGTGGGGAGCCGAGAGAA 60.684 66.667 0.00 0.00 0.00 2.87
136 137 2.066999 GGTGGGGAGCCGAGAGAAT 61.067 63.158 0.00 0.00 0.00 2.40
137 138 1.443828 GTGGGGAGCCGAGAGAATC 59.556 63.158 0.00 0.00 0.00 2.52
138 139 1.762460 TGGGGAGCCGAGAGAATCC 60.762 63.158 0.00 0.00 33.66 3.01
139 140 1.762460 GGGGAGCCGAGAGAATCCA 60.762 63.158 0.00 0.00 37.29 3.41
140 141 1.124477 GGGGAGCCGAGAGAATCCAT 61.124 60.000 0.00 0.00 37.29 3.41
141 142 0.034616 GGGAGCCGAGAGAATCCATG 59.965 60.000 0.00 0.00 37.29 3.66
142 143 0.755686 GGAGCCGAGAGAATCCATGT 59.244 55.000 0.00 0.00 36.09 3.21
143 144 1.539929 GGAGCCGAGAGAATCCATGTG 60.540 57.143 0.00 0.00 36.09 3.21
144 145 0.179062 AGCCGAGAGAATCCATGTGC 60.179 55.000 0.00 0.00 33.66 4.57
145 146 0.462581 GCCGAGAGAATCCATGTGCA 60.463 55.000 0.00 0.00 33.66 4.57
146 147 2.013563 GCCGAGAGAATCCATGTGCAA 61.014 52.381 0.00 0.00 33.66 4.08
147 148 2.569059 CCGAGAGAATCCATGTGCAAT 58.431 47.619 0.00 0.00 33.66 3.56
148 149 3.732212 CCGAGAGAATCCATGTGCAATA 58.268 45.455 0.00 0.00 33.66 1.90
149 150 4.321718 CCGAGAGAATCCATGTGCAATAT 58.678 43.478 0.00 0.00 33.66 1.28
150 151 4.391216 CCGAGAGAATCCATGTGCAATATC 59.609 45.833 0.00 0.00 33.66 1.63
151 152 4.391216 CGAGAGAATCCATGTGCAATATCC 59.609 45.833 0.00 0.00 33.66 2.59
152 153 5.311265 GAGAGAATCCATGTGCAATATCCA 58.689 41.667 0.00 0.00 33.66 3.41
153 154 5.888901 AGAGAATCCATGTGCAATATCCAT 58.111 37.500 0.00 0.00 33.66 3.41
154 155 6.312529 AGAGAATCCATGTGCAATATCCATT 58.687 36.000 0.00 0.00 33.66 3.16
155 156 6.781014 AGAGAATCCATGTGCAATATCCATTT 59.219 34.615 0.00 0.00 33.66 2.32
156 157 7.289317 AGAGAATCCATGTGCAATATCCATTTT 59.711 33.333 0.00 0.00 33.66 1.82
157 158 8.481492 AGAATCCATGTGCAATATCCATTTTA 57.519 30.769 0.00 0.00 0.00 1.52
158 159 8.582437 AGAATCCATGTGCAATATCCATTTTAG 58.418 33.333 0.00 0.00 0.00 1.85
159 160 8.481492 AATCCATGTGCAATATCCATTTTAGA 57.519 30.769 0.00 0.00 0.00 2.10
160 161 7.514784 TCCATGTGCAATATCCATTTTAGAG 57.485 36.000 0.00 0.00 0.00 2.43
161 162 7.289310 TCCATGTGCAATATCCATTTTAGAGA 58.711 34.615 0.00 0.00 0.00 3.10
162 163 7.779326 TCCATGTGCAATATCCATTTTAGAGAA 59.221 33.333 0.00 0.00 0.00 2.87
163 164 8.415553 CCATGTGCAATATCCATTTTAGAGAAA 58.584 33.333 0.00 0.00 0.00 2.52
164 165 9.976511 CATGTGCAATATCCATTTTAGAGAAAT 57.023 29.630 0.00 0.00 0.00 2.17
165 166 9.976511 ATGTGCAATATCCATTTTAGAGAAATG 57.023 29.630 0.00 4.86 37.38 2.32
166 167 7.922278 TGTGCAATATCCATTTTAGAGAAATGC 59.078 33.333 6.07 0.00 36.56 3.56
167 168 7.922278 GTGCAATATCCATTTTAGAGAAATGCA 59.078 33.333 6.07 0.00 36.56 3.96
168 169 7.922278 TGCAATATCCATTTTAGAGAAATGCAC 59.078 33.333 0.00 0.00 36.56 4.57
169 170 7.113965 GCAATATCCATTTTAGAGAAATGCACG 59.886 37.037 0.00 0.00 36.56 5.34
170 171 4.963276 TCCATTTTAGAGAAATGCACGG 57.037 40.909 0.00 0.00 36.56 4.94
171 172 4.331968 TCCATTTTAGAGAAATGCACGGT 58.668 39.130 0.00 0.00 36.56 4.83
172 173 5.492895 TCCATTTTAGAGAAATGCACGGTA 58.507 37.500 0.00 0.00 36.56 4.02
173 174 5.353123 TCCATTTTAGAGAAATGCACGGTAC 59.647 40.000 0.00 0.00 36.56 3.34
174 175 5.123186 CCATTTTAGAGAAATGCACGGTACA 59.877 40.000 0.00 0.00 36.56 2.90
175 176 6.183360 CCATTTTAGAGAAATGCACGGTACAT 60.183 38.462 0.00 0.00 36.56 2.29
176 177 5.794687 TTTAGAGAAATGCACGGTACATG 57.205 39.130 0.00 0.00 0.00 3.21
177 178 3.610040 AGAGAAATGCACGGTACATGA 57.390 42.857 0.00 0.00 0.00 3.07
178 179 4.142609 AGAGAAATGCACGGTACATGAT 57.857 40.909 0.00 0.00 0.00 2.45
179 180 4.517285 AGAGAAATGCACGGTACATGATT 58.483 39.130 0.00 0.00 0.00 2.57
180 181 5.670485 AGAGAAATGCACGGTACATGATTA 58.330 37.500 0.00 0.00 0.00 1.75
181 182 6.112734 AGAGAAATGCACGGTACATGATTAA 58.887 36.000 0.00 0.00 0.00 1.40
182 183 6.597672 AGAGAAATGCACGGTACATGATTAAA 59.402 34.615 0.00 0.00 0.00 1.52
183 184 7.283127 AGAGAAATGCACGGTACATGATTAAAT 59.717 33.333 0.00 0.00 0.00 1.40
184 185 7.771183 AGAAATGCACGGTACATGATTAAATT 58.229 30.769 0.00 0.00 0.00 1.82
185 186 8.250332 AGAAATGCACGGTACATGATTAAATTT 58.750 29.630 0.00 0.00 0.00 1.82
186 187 7.754069 AATGCACGGTACATGATTAAATTTG 57.246 32.000 0.00 0.00 0.00 2.32
187 188 6.502136 TGCACGGTACATGATTAAATTTGA 57.498 33.333 0.00 0.00 0.00 2.69
188 189 6.914259 TGCACGGTACATGATTAAATTTGAA 58.086 32.000 0.00 0.00 0.00 2.69
189 190 6.804295 TGCACGGTACATGATTAAATTTGAAC 59.196 34.615 0.00 0.00 0.00 3.18
190 191 6.804295 GCACGGTACATGATTAAATTTGAACA 59.196 34.615 0.00 0.00 0.00 3.18
191 192 7.487829 GCACGGTACATGATTAAATTTGAACAT 59.512 33.333 0.00 0.12 0.00 2.71
192 193 8.797215 CACGGTACATGATTAAATTTGAACATG 58.203 33.333 23.17 23.17 40.24 3.21
193 194 8.735315 ACGGTACATGATTAAATTTGAACATGA 58.265 29.630 28.35 15.55 38.55 3.07
194 195 9.566530 CGGTACATGATTAAATTTGAACATGAA 57.433 29.630 28.35 5.25 38.55 2.57
197 198 8.483307 ACATGATTAAATTTGAACATGAAGGC 57.517 30.769 28.35 3.07 38.55 4.35
198 199 7.550196 ACATGATTAAATTTGAACATGAAGGCC 59.450 33.333 28.35 0.00 38.55 5.19
199 200 7.243604 TGATTAAATTTGAACATGAAGGCCT 57.756 32.000 0.00 0.00 0.00 5.19
200 201 7.678837 TGATTAAATTTGAACATGAAGGCCTT 58.321 30.769 20.65 20.65 0.00 4.35
201 202 8.156165 TGATTAAATTTGAACATGAAGGCCTTT 58.844 29.630 21.54 2.04 0.00 3.11
202 203 7.727331 TTAAATTTGAACATGAAGGCCTTTG 57.273 32.000 21.54 17.51 0.00 2.77
203 204 4.961438 ATTTGAACATGAAGGCCTTTGT 57.039 36.364 21.54 18.24 0.00 2.83
204 205 4.751767 TTTGAACATGAAGGCCTTTGTT 57.248 36.364 27.91 27.91 35.14 2.83
205 206 4.751767 TTGAACATGAAGGCCTTTGTTT 57.248 36.364 28.10 16.50 32.73 2.83
206 207 4.751767 TGAACATGAAGGCCTTTGTTTT 57.248 36.364 28.10 16.81 32.73 2.43
207 208 5.860941 TGAACATGAAGGCCTTTGTTTTA 57.139 34.783 28.10 20.07 32.73 1.52
208 209 6.418057 TGAACATGAAGGCCTTTGTTTTAT 57.582 33.333 28.10 12.80 32.73 1.40
209 210 7.531857 TGAACATGAAGGCCTTTGTTTTATA 57.468 32.000 28.10 16.40 32.73 0.98
210 211 7.375053 TGAACATGAAGGCCTTTGTTTTATAC 58.625 34.615 28.10 18.62 32.73 1.47
211 212 5.949735 ACATGAAGGCCTTTGTTTTATACG 58.050 37.500 21.54 2.29 0.00 3.06
212 213 5.475564 ACATGAAGGCCTTTGTTTTATACGT 59.524 36.000 21.54 1.35 0.00 3.57
213 214 5.616488 TGAAGGCCTTTGTTTTATACGTC 57.384 39.130 21.54 1.96 0.00 4.34
214 215 5.064558 TGAAGGCCTTTGTTTTATACGTCA 58.935 37.500 21.54 5.02 0.00 4.35
215 216 5.708230 TGAAGGCCTTTGTTTTATACGTCAT 59.292 36.000 21.54 0.00 0.00 3.06
216 217 5.560966 AGGCCTTTGTTTTATACGTCATG 57.439 39.130 0.00 0.00 0.00 3.07
217 218 4.102649 GGCCTTTGTTTTATACGTCATGC 58.897 43.478 0.00 0.00 0.00 4.06
218 219 4.102649 GCCTTTGTTTTATACGTCATGCC 58.897 43.478 0.00 0.00 0.00 4.40
219 220 4.380023 GCCTTTGTTTTATACGTCATGCCA 60.380 41.667 0.00 0.00 0.00 4.92
220 221 5.678616 GCCTTTGTTTTATACGTCATGCCAT 60.679 40.000 0.00 0.00 0.00 4.40
221 222 6.329496 CCTTTGTTTTATACGTCATGCCATT 58.671 36.000 0.00 0.00 0.00 3.16
222 223 6.811170 CCTTTGTTTTATACGTCATGCCATTT 59.189 34.615 0.00 0.00 0.00 2.32
223 224 7.330700 CCTTTGTTTTATACGTCATGCCATTTT 59.669 33.333 0.00 0.00 0.00 1.82
224 225 8.594881 TTTGTTTTATACGTCATGCCATTTTT 57.405 26.923 0.00 0.00 0.00 1.94
225 226 7.804614 TGTTTTATACGTCATGCCATTTTTC 57.195 32.000 0.00 0.00 0.00 2.29
226 227 7.598278 TGTTTTATACGTCATGCCATTTTTCT 58.402 30.769 0.00 0.00 0.00 2.52
227 228 7.540400 TGTTTTATACGTCATGCCATTTTTCTG 59.460 33.333 0.00 0.00 0.00 3.02
228 229 6.751514 TTATACGTCATGCCATTTTTCTGT 57.248 33.333 0.00 0.00 0.00 3.41
229 230 3.287312 ACGTCATGCCATTTTTCTGTG 57.713 42.857 0.00 0.00 0.00 3.66
230 231 2.622942 ACGTCATGCCATTTTTCTGTGT 59.377 40.909 0.00 0.00 0.00 3.72
231 232 3.068024 ACGTCATGCCATTTTTCTGTGTT 59.932 39.130 0.00 0.00 0.00 3.32
232 233 3.426191 CGTCATGCCATTTTTCTGTGTTG 59.574 43.478 0.00 0.00 0.00 3.33
233 234 4.370917 GTCATGCCATTTTTCTGTGTTGT 58.629 39.130 0.00 0.00 0.00 3.32
234 235 4.810491 GTCATGCCATTTTTCTGTGTTGTT 59.190 37.500 0.00 0.00 0.00 2.83
235 236 5.294060 GTCATGCCATTTTTCTGTGTTGTTT 59.706 36.000 0.00 0.00 0.00 2.83
236 237 5.879223 TCATGCCATTTTTCTGTGTTGTTTT 59.121 32.000 0.00 0.00 0.00 2.43
237 238 7.010923 GTCATGCCATTTTTCTGTGTTGTTTTA 59.989 33.333 0.00 0.00 0.00 1.52
238 239 7.550551 TCATGCCATTTTTCTGTGTTGTTTTAA 59.449 29.630 0.00 0.00 0.00 1.52
239 240 7.066374 TGCCATTTTTCTGTGTTGTTTTAAC 57.934 32.000 0.00 0.00 0.00 2.01
240 241 6.876257 TGCCATTTTTCTGTGTTGTTTTAACT 59.124 30.769 0.00 0.00 0.00 2.24
241 242 7.148507 TGCCATTTTTCTGTGTTGTTTTAACTG 60.149 33.333 0.00 0.00 0.00 3.16
242 243 7.676104 GCCATTTTTCTGTGTTGTTTTAACTGG 60.676 37.037 0.00 0.00 0.00 4.00
243 244 7.333174 CCATTTTTCTGTGTTGTTTTAACTGGT 59.667 33.333 0.00 0.00 0.00 4.00
244 245 8.716909 CATTTTTCTGTGTTGTTTTAACTGGTT 58.283 29.630 0.00 0.00 0.00 3.67
245 246 9.930693 ATTTTTCTGTGTTGTTTTAACTGGTTA 57.069 25.926 0.00 0.00 0.00 2.85
246 247 8.973835 TTTTCTGTGTTGTTTTAACTGGTTAG 57.026 30.769 0.00 0.00 0.00 2.34
247 248 7.925043 TTCTGTGTTGTTTTAACTGGTTAGA 57.075 32.000 0.00 0.00 0.00 2.10
248 249 7.548196 TCTGTGTTGTTTTAACTGGTTAGAG 57.452 36.000 0.00 0.00 0.00 2.43
249 250 7.332557 TCTGTGTTGTTTTAACTGGTTAGAGA 58.667 34.615 0.00 0.00 0.00 3.10
250 251 7.825270 TCTGTGTTGTTTTAACTGGTTAGAGAA 59.175 33.333 0.00 0.00 0.00 2.87
251 252 8.514330 TGTGTTGTTTTAACTGGTTAGAGAAT 57.486 30.769 0.00 0.00 0.00 2.40
252 253 8.402472 TGTGTTGTTTTAACTGGTTAGAGAATG 58.598 33.333 0.00 0.00 0.00 2.67
253 254 8.617809 GTGTTGTTTTAACTGGTTAGAGAATGA 58.382 33.333 0.00 0.00 0.00 2.57
254 255 8.836413 TGTTGTTTTAACTGGTTAGAGAATGAG 58.164 33.333 0.00 0.00 0.00 2.90
255 256 8.837389 GTTGTTTTAACTGGTTAGAGAATGAGT 58.163 33.333 0.00 0.00 0.00 3.41
256 257 8.974060 TGTTTTAACTGGTTAGAGAATGAGTT 57.026 30.769 0.00 0.00 0.00 3.01
257 258 9.052759 TGTTTTAACTGGTTAGAGAATGAGTTC 57.947 33.333 0.00 0.00 34.46 3.01
258 259 8.504815 GTTTTAACTGGTTAGAGAATGAGTTCC 58.495 37.037 0.00 0.00 34.81 3.62
259 260 5.825593 AACTGGTTAGAGAATGAGTTCCA 57.174 39.130 0.00 0.00 34.81 3.53
260 261 5.825593 ACTGGTTAGAGAATGAGTTCCAA 57.174 39.130 0.00 0.00 34.81 3.53
261 262 6.187727 ACTGGTTAGAGAATGAGTTCCAAA 57.812 37.500 0.00 0.00 34.81 3.28
262 263 6.601332 ACTGGTTAGAGAATGAGTTCCAAAA 58.399 36.000 0.00 0.00 34.81 2.44
263 264 7.234355 ACTGGTTAGAGAATGAGTTCCAAAAT 58.766 34.615 0.00 0.00 34.81 1.82
264 265 8.383175 ACTGGTTAGAGAATGAGTTCCAAAATA 58.617 33.333 0.00 0.00 34.81 1.40
265 266 9.401058 CTGGTTAGAGAATGAGTTCCAAAATAT 57.599 33.333 0.00 0.00 34.81 1.28
266 267 9.396022 TGGTTAGAGAATGAGTTCCAAAATATC 57.604 33.333 0.00 0.00 34.81 1.63
267 268 9.396022 GGTTAGAGAATGAGTTCCAAAATATCA 57.604 33.333 0.00 0.00 34.81 2.15
270 271 8.503458 AGAGAATGAGTTCCAAAATATCAGTG 57.497 34.615 0.00 0.00 34.81 3.66
271 272 8.105829 AGAGAATGAGTTCCAAAATATCAGTGT 58.894 33.333 0.00 0.00 34.81 3.55
272 273 8.641498 AGAATGAGTTCCAAAATATCAGTGTT 57.359 30.769 0.00 0.00 34.81 3.32
273 274 9.082313 AGAATGAGTTCCAAAATATCAGTGTTT 57.918 29.630 0.00 0.00 34.81 2.83
277 278 8.792633 TGAGTTCCAAAATATCAGTGTTTAAGG 58.207 33.333 0.00 0.00 0.00 2.69
278 279 8.706322 AGTTCCAAAATATCAGTGTTTAAGGT 57.294 30.769 0.00 0.00 0.00 3.50
279 280 9.143155 AGTTCCAAAATATCAGTGTTTAAGGTT 57.857 29.630 0.00 0.00 0.00 3.50
280 281 9.758651 GTTCCAAAATATCAGTGTTTAAGGTTT 57.241 29.630 0.00 0.00 0.00 3.27
288 289 7.916914 ATCAGTGTTTAAGGTTTAATAGCGT 57.083 32.000 0.00 0.00 0.00 5.07
289 290 7.355332 TCAGTGTTTAAGGTTTAATAGCGTC 57.645 36.000 0.00 0.00 0.00 5.19
290 291 6.930164 TCAGTGTTTAAGGTTTAATAGCGTCA 59.070 34.615 0.00 0.00 0.00 4.35
291 292 7.013529 CAGTGTTTAAGGTTTAATAGCGTCAC 58.986 38.462 0.00 0.00 0.00 3.67
292 293 6.707161 AGTGTTTAAGGTTTAATAGCGTCACA 59.293 34.615 0.00 0.00 0.00 3.58
293 294 7.013529 GTGTTTAAGGTTTAATAGCGTCACAG 58.986 38.462 0.00 0.00 0.00 3.66
294 295 6.930164 TGTTTAAGGTTTAATAGCGTCACAGA 59.070 34.615 0.00 0.00 0.00 3.41
295 296 7.441760 TGTTTAAGGTTTAATAGCGTCACAGAA 59.558 33.333 0.00 0.00 0.00 3.02
296 297 7.966246 TTAAGGTTTAATAGCGTCACAGAAA 57.034 32.000 0.00 0.00 0.00 2.52
297 298 6.870971 AAGGTTTAATAGCGTCACAGAAAA 57.129 33.333 0.00 0.00 0.00 2.29
298 299 6.870971 AGGTTTAATAGCGTCACAGAAAAA 57.129 33.333 0.00 0.00 0.00 1.94
299 300 7.448748 AGGTTTAATAGCGTCACAGAAAAAT 57.551 32.000 0.00 0.00 0.00 1.82
300 301 7.305474 AGGTTTAATAGCGTCACAGAAAAATG 58.695 34.615 0.00 0.00 0.00 2.32
301 302 6.526674 GGTTTAATAGCGTCACAGAAAAATGG 59.473 38.462 0.00 0.00 0.00 3.16
302 303 6.811253 TTAATAGCGTCACAGAAAAATGGT 57.189 33.333 0.00 0.00 0.00 3.55
303 304 5.705609 AATAGCGTCACAGAAAAATGGTT 57.294 34.783 0.00 0.00 0.00 3.67
304 305 5.705609 ATAGCGTCACAGAAAAATGGTTT 57.294 34.783 0.00 0.00 0.00 3.27
305 306 4.385358 AGCGTCACAGAAAAATGGTTTT 57.615 36.364 0.00 0.00 39.70 2.43
314 315 4.955811 GAAAAATGGTTTTCTGGGAGGT 57.044 40.909 4.98 0.00 46.15 3.85
316 317 5.779922 GAAAAATGGTTTTCTGGGAGGTAC 58.220 41.667 4.98 0.00 46.15 3.34
317 318 5.464069 AAAAATGGTTTTCTGGGAGGTACT 58.536 37.500 0.00 0.00 34.21 2.73
318 319 4.741928 AATGGTTTTCTGGGAGGTACTT 57.258 40.909 0.00 0.00 41.55 2.24
319 320 3.782656 TGGTTTTCTGGGAGGTACTTC 57.217 47.619 0.00 0.00 41.55 3.01
320 321 8.832910 AAAAATGGTTTTCTGGGAGGTACTTCC 61.833 40.741 15.55 15.55 43.55 3.46
334 335 6.793505 AGGTACTTCCTCTATCGAATGTTT 57.206 37.500 0.00 0.00 44.42 2.83
335 336 7.184067 AGGTACTTCCTCTATCGAATGTTTT 57.816 36.000 0.00 0.00 44.42 2.43
336 337 7.266400 AGGTACTTCCTCTATCGAATGTTTTC 58.734 38.462 0.00 0.00 44.42 2.29
344 345 4.737601 GAATGTTTTCGTCCGCCG 57.262 55.556 0.00 0.00 38.13 6.46
345 346 2.155665 GAATGTTTTCGTCCGCCGA 58.844 52.632 0.00 0.00 45.66 5.54
352 353 3.976000 TCGTCCGCCGAAACCGAA 61.976 61.111 0.00 0.00 44.03 4.30
353 354 3.770424 CGTCCGCCGAAACCGAAC 61.770 66.667 0.00 0.00 39.56 3.95
354 355 3.770424 GTCCGCCGAAACCGAACG 61.770 66.667 0.00 0.00 0.00 3.95
355 356 4.283403 TCCGCCGAAACCGAACGT 62.283 61.111 0.00 0.00 0.00 3.99
356 357 3.340253 CCGCCGAAACCGAACGTT 61.340 61.111 0.00 0.00 35.70 3.99
357 358 2.169327 CGCCGAAACCGAACGTTC 59.831 61.111 18.47 18.47 31.78 3.95
358 359 2.552768 GCCGAAACCGAACGTTCC 59.447 61.111 22.07 7.04 31.78 3.62
359 360 2.958204 GCCGAAACCGAACGTTCCC 61.958 63.158 22.07 0.00 31.78 3.97
360 361 1.594836 CCGAAACCGAACGTTCCCA 60.595 57.895 22.07 0.00 31.78 4.37
361 362 1.562575 CCGAAACCGAACGTTCCCAG 61.563 60.000 22.07 13.44 31.78 4.45
362 363 1.562575 CGAAACCGAACGTTCCCAGG 61.563 60.000 22.07 18.91 31.78 4.45
363 364 1.228033 AAACCGAACGTTCCCAGGG 60.228 57.895 22.07 18.57 31.78 4.45
364 365 1.698067 AAACCGAACGTTCCCAGGGA 61.698 55.000 22.07 3.01 31.78 4.20
365 366 2.047560 CCGAACGTTCCCAGGGAC 60.048 66.667 22.07 2.60 0.00 4.46
366 367 2.738480 CGAACGTTCCCAGGGACA 59.262 61.111 22.07 0.00 0.00 4.02
367 368 1.295423 CGAACGTTCCCAGGGACAT 59.705 57.895 22.07 0.00 0.00 3.06
368 369 0.321298 CGAACGTTCCCAGGGACATT 60.321 55.000 22.07 2.27 0.00 2.71
369 370 1.880646 CGAACGTTCCCAGGGACATTT 60.881 52.381 22.07 0.32 0.00 2.32
370 371 1.810755 GAACGTTCCCAGGGACATTTC 59.189 52.381 17.68 7.04 0.00 2.17
371 372 0.768622 ACGTTCCCAGGGACATTTCA 59.231 50.000 8.12 0.00 0.00 2.69
372 373 1.354368 ACGTTCCCAGGGACATTTCAT 59.646 47.619 8.12 0.00 0.00 2.57
373 374 2.225017 ACGTTCCCAGGGACATTTCATT 60.225 45.455 8.12 0.00 0.00 2.57
374 375 2.825532 CGTTCCCAGGGACATTTCATTT 59.174 45.455 8.12 0.00 0.00 2.32
375 376 3.367292 CGTTCCCAGGGACATTTCATTTG 60.367 47.826 8.12 0.00 0.00 2.32
376 377 3.541242 TCCCAGGGACATTTCATTTGT 57.459 42.857 3.01 0.00 0.00 2.83
377 378 4.666412 TCCCAGGGACATTTCATTTGTA 57.334 40.909 3.01 0.00 0.00 2.41
378 379 5.205517 TCCCAGGGACATTTCATTTGTAT 57.794 39.130 3.01 0.00 0.00 2.29
379 380 6.334378 TCCCAGGGACATTTCATTTGTATA 57.666 37.500 3.01 0.00 0.00 1.47
380 381 6.736581 TCCCAGGGACATTTCATTTGTATAA 58.263 36.000 3.01 0.00 0.00 0.98
381 382 7.185565 TCCCAGGGACATTTCATTTGTATAAA 58.814 34.615 3.01 0.00 0.00 1.40
382 383 7.123547 TCCCAGGGACATTTCATTTGTATAAAC 59.876 37.037 3.01 0.00 0.00 2.01
383 384 6.972328 CCAGGGACATTTCATTTGTATAAACG 59.028 38.462 0.00 0.00 0.00 3.60
384 385 6.972328 CAGGGACATTTCATTTGTATAAACGG 59.028 38.462 0.00 0.00 0.00 4.44
385 386 6.887545 AGGGACATTTCATTTGTATAAACGGA 59.112 34.615 0.00 0.00 0.00 4.69
386 387 7.394923 AGGGACATTTCATTTGTATAAACGGAA 59.605 33.333 0.00 0.00 0.00 4.30
387 388 8.030106 GGGACATTTCATTTGTATAAACGGAAA 58.970 33.333 12.72 12.72 37.09 3.13
388 389 8.856247 GGACATTTCATTTGTATAAACGGAAAC 58.144 33.333 12.64 4.73 36.29 2.78
389 390 8.751302 ACATTTCATTTGTATAAACGGAAACC 57.249 30.769 12.64 0.00 36.29 3.27
390 391 7.815549 ACATTTCATTTGTATAAACGGAAACCC 59.184 33.333 12.64 0.00 36.29 4.11
391 392 7.527568 TTTCATTTGTATAAACGGAAACCCT 57.472 32.000 8.57 0.00 32.25 4.34
392 393 6.746745 TCATTTGTATAAACGGAAACCCTC 57.253 37.500 0.00 0.00 0.00 4.30
656 657 9.196552 CTTTTAAAAATAGCAAGAGGACAAAGG 57.803 33.333 1.66 0.00 0.00 3.11
718 719 6.069331 AGATGACCACGGTGACTAACTATAT 58.931 40.000 10.28 0.00 0.00 0.86
719 720 5.762825 TGACCACGGTGACTAACTATATC 57.237 43.478 10.28 0.00 0.00 1.63
852 880 3.744660 GTCATTTCCACACACTTCCTCT 58.255 45.455 0.00 0.00 0.00 3.69
1161 1189 1.140407 GCTACGCGCTCAACTTCGAT 61.140 55.000 5.73 0.00 35.14 3.59
1173 1201 2.445845 TTCGATGAGGGCCCCGAT 60.446 61.111 21.43 11.13 0.00 4.18
1340 1368 1.789464 CGCCTAGATCTTTTGCTAGCG 59.211 52.381 10.77 2.06 34.22 4.26
1341 1369 2.799917 CGCCTAGATCTTTTGCTAGCGT 60.800 50.000 10.77 0.00 34.22 5.07
1342 1370 3.550233 CGCCTAGATCTTTTGCTAGCGTA 60.550 47.826 10.77 0.00 34.22 4.42
1343 1371 4.561105 GCCTAGATCTTTTGCTAGCGTAT 58.439 43.478 10.77 0.00 34.22 3.06
1344 1372 4.387256 GCCTAGATCTTTTGCTAGCGTATG 59.613 45.833 10.77 3.05 34.22 2.39
1367 1395 1.591158 GTGTAGTGTGTTCGGTGTGTG 59.409 52.381 0.00 0.00 0.00 3.82
1389 1417 4.098654 TGTCCGTTTCATTTCCATGTTTGT 59.901 37.500 0.00 0.00 0.00 2.83
1393 1421 4.269603 CGTTTCATTTCCATGTTTGTTGCA 59.730 37.500 0.00 0.00 0.00 4.08
1398 1426 6.519382 TCATTTCCATGTTTGTTGCATGTAA 58.481 32.000 0.00 0.00 41.38 2.41
1399 1427 6.423302 TCATTTCCATGTTTGTTGCATGTAAC 59.577 34.615 18.59 18.59 41.38 2.50
1402 1430 6.832520 TCCATGTTTGTTGCATGTAACTAT 57.167 33.333 24.30 12.36 41.38 2.12
1403 1431 7.929941 TCCATGTTTGTTGCATGTAACTATA 57.070 32.000 24.30 12.83 41.38 1.31
1404 1432 8.518430 TCCATGTTTGTTGCATGTAACTATAT 57.482 30.769 24.30 14.22 41.38 0.86
1405 1433 9.620259 TCCATGTTTGTTGCATGTAACTATATA 57.380 29.630 24.30 10.46 41.38 0.86
1406 1434 9.882996 CCATGTTTGTTGCATGTAACTATATAG 57.117 33.333 24.30 8.27 41.38 1.31
1412 1440 9.976511 TTGTTGCATGTAACTATATAGTACTCC 57.023 33.333 24.30 5.22 34.99 3.85
1413 1441 9.363401 TGTTGCATGTAACTATATAGTACTCCT 57.637 33.333 24.30 2.76 34.99 3.69
1486 1514 4.424061 TTCACCTTTCATTTGCATCGAG 57.576 40.909 0.00 0.00 0.00 4.04
1532 1560 1.030488 ATAGCCAAGCTGCACTGCTG 61.030 55.000 16.59 2.86 43.24 4.41
1533 1561 4.052229 GCCAAGCTGCACTGCTGG 62.052 66.667 9.68 6.64 43.24 4.85
1534 1562 2.596631 CCAAGCTGCACTGCTGGT 60.597 61.111 6.77 6.77 43.24 4.00
1535 1563 2.623915 CCAAGCTGCACTGCTGGTC 61.624 63.158 12.37 0.00 43.24 4.02
1536 1564 1.600076 CAAGCTGCACTGCTGGTCT 60.600 57.895 12.37 0.00 43.24 3.85
1537 1565 1.600076 AAGCTGCACTGCTGGTCTG 60.600 57.895 12.37 0.00 43.24 3.51
1538 1566 3.735029 GCTGCACTGCTGGTCTGC 61.735 66.667 9.68 0.00 0.00 4.26
1539 1567 2.032223 CTGCACTGCTGGTCTGCT 59.968 61.111 1.98 0.00 0.00 4.24
1550 1578 1.292223 GGTCTGCTGCACCTACGAA 59.708 57.895 0.00 0.00 0.00 3.85
1551 1579 0.737715 GGTCTGCTGCACCTACGAAG 60.738 60.000 0.00 0.00 0.00 3.79
1564 1592 3.698040 ACCTACGAAGTACATCACCGATT 59.302 43.478 0.00 0.00 45.11 3.34
1583 1611 2.602257 TGATCACGTGGATTGGCTAG 57.398 50.000 17.00 0.00 36.00 3.42
1584 1612 2.107366 TGATCACGTGGATTGGCTAGA 58.893 47.619 17.00 0.00 36.00 2.43
1672 1713 2.379972 ACAAGGGTAGATCACTCCTCG 58.620 52.381 0.00 0.00 30.16 4.63
1684 1725 0.901124 ACTCCTCGATGAAAGCAGCT 59.099 50.000 0.00 0.00 0.00 4.24
1783 1836 7.044181 GGATTATGCTCCTCGATTGATTCATA 58.956 38.462 0.00 0.00 32.18 2.15
1801 1854 9.337396 TGATTCATATTGGACTATACAACAACC 57.663 33.333 0.00 0.00 0.00 3.77
1815 1868 2.594592 AACCAGCGTGCAAGGACC 60.595 61.111 9.86 0.00 0.00 4.46
1820 1873 3.050275 GCGTGCAAGGACCTGGAC 61.050 66.667 0.00 2.92 34.56 4.02
1831 1884 4.961438 AGGACCTGGACGTAACTTTTTA 57.039 40.909 0.00 0.00 0.00 1.52
1840 1893 6.114767 TGGACGTAACTTTTTACTTCTGGTT 58.885 36.000 0.00 0.00 36.91 3.67
1843 1896 7.641411 GGACGTAACTTTTTACTTCTGGTTTTC 59.359 37.037 0.00 0.00 36.91 2.29
1857 1910 8.488668 ACTTCTGGTTTTCTTTGTACTACCTTA 58.511 33.333 0.00 0.00 0.00 2.69
1928 1981 2.668457 GAGAAATGCTATATGGCGACCG 59.332 50.000 6.57 0.00 34.52 4.79
1965 2018 0.314935 CCCAGCAAACGCATCAACTT 59.685 50.000 0.00 0.00 0.00 2.66
1966 2019 1.269726 CCCAGCAAACGCATCAACTTT 60.270 47.619 0.00 0.00 0.00 2.66
1998 2051 2.560119 GGCACAAATCACGGCACCA 61.560 57.895 0.00 0.00 0.00 4.17
1999 2052 1.371635 GCACAAATCACGGCACCAC 60.372 57.895 0.00 0.00 0.00 4.16
2018 2071 1.019278 CGATGGTGCCACGCTAGTTT 61.019 55.000 0.00 0.00 0.00 2.66
2019 2072 1.165270 GATGGTGCCACGCTAGTTTT 58.835 50.000 0.00 0.00 0.00 2.43
2020 2073 1.130561 GATGGTGCCACGCTAGTTTTC 59.869 52.381 0.00 0.00 0.00 2.29
2021 2074 0.887387 TGGTGCCACGCTAGTTTTCC 60.887 55.000 0.00 0.00 0.00 3.13
2022 2075 1.583495 GGTGCCACGCTAGTTTTCCC 61.583 60.000 0.00 0.00 0.00 3.97
2023 2076 0.605589 GTGCCACGCTAGTTTTCCCT 60.606 55.000 0.00 0.00 0.00 4.20
2024 2077 0.978151 TGCCACGCTAGTTTTCCCTA 59.022 50.000 0.00 0.00 0.00 3.53
2025 2078 1.338389 TGCCACGCTAGTTTTCCCTAC 60.338 52.381 0.00 0.00 0.00 3.18
2026 2079 1.066358 GCCACGCTAGTTTTCCCTACT 60.066 52.381 0.00 0.00 0.00 2.57
2027 2080 2.167075 GCCACGCTAGTTTTCCCTACTA 59.833 50.000 0.00 0.00 0.00 1.82
2048 2101 2.126071 GCTGCGAACGGCTCACTA 60.126 61.111 0.00 0.00 45.33 2.74
2090 2143 5.941647 TCCTCCCTAACTAAAATGAAAACCG 59.058 40.000 0.00 0.00 0.00 4.44
2096 2149 3.143728 ACTAAAATGAAAACCGAGGCGT 58.856 40.909 0.00 0.00 0.00 5.68
2102 2155 3.409605 AAAACCGAGGCGTGTGGGT 62.410 57.895 0.00 0.00 0.00 4.51
2139 2192 2.481276 CGCGACCTCATTATGGAGTGAA 60.481 50.000 0.00 0.00 32.91 3.18
2143 2196 4.446371 GACCTCATTATGGAGTGAAGTGG 58.554 47.826 0.00 0.00 32.91 4.00
2160 2213 1.529226 TGGGCATTTACCACTGAACG 58.471 50.000 0.00 0.00 31.83 3.95
2209 2262 9.329913 GCAGTAAAGTTTGTCACATATACTTTG 57.670 33.333 17.19 7.89 38.89 2.77
2273 2326 7.398904 CCAAAATTTCCTATTTTCAGAGGGGTA 59.601 37.037 0.00 0.00 33.27 3.69
2287 2340 1.357761 AGGGGTAGGGGTGTTTTCATG 59.642 52.381 0.00 0.00 0.00 3.07
2288 2341 1.618616 GGGGTAGGGGTGTTTTCATGG 60.619 57.143 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.195698 GACGATGGGTGAAGCCGC 61.196 66.667 0.00 0.00 38.44 6.53
8 9 2.511600 GGACGATGGGTGAAGCCG 60.512 66.667 0.00 0.00 38.44 5.52
9 10 2.124695 GGGACGATGGGTGAAGCC 60.125 66.667 0.00 0.00 0.00 4.35
10 11 1.153349 GAGGGACGATGGGTGAAGC 60.153 63.158 0.00 0.00 0.00 3.86
11 12 1.522569 GGAGGGACGATGGGTGAAG 59.477 63.158 0.00 0.00 0.00 3.02
12 13 2.355986 CGGAGGGACGATGGGTGAA 61.356 63.158 0.00 0.00 35.47 3.18
13 14 2.758327 CGGAGGGACGATGGGTGA 60.758 66.667 0.00 0.00 35.47 4.02
35 36 4.598894 CCCTCTCCTGCATCGCCG 62.599 72.222 0.00 0.00 0.00 6.46
36 37 4.925861 GCCCTCTCCTGCATCGCC 62.926 72.222 0.00 0.00 0.00 5.54
38 39 4.598894 CCGCCCTCTCCTGCATCG 62.599 72.222 0.00 0.00 0.00 3.84
39 40 3.474570 ACCGCCCTCTCCTGCATC 61.475 66.667 0.00 0.00 0.00 3.91
40 41 3.790437 CACCGCCCTCTCCTGCAT 61.790 66.667 0.00 0.00 0.00 3.96
58 59 3.068064 CGGCCAACAATCACCCCC 61.068 66.667 2.24 0.00 0.00 5.40
59 60 3.068064 CCGGCCAACAATCACCCC 61.068 66.667 2.24 0.00 0.00 4.95
60 61 3.758931 GCCGGCCAACAATCACCC 61.759 66.667 18.11 0.00 0.00 4.61
61 62 4.114997 CGCCGGCCAACAATCACC 62.115 66.667 23.46 0.00 0.00 4.02
62 63 4.114997 CCGCCGGCCAACAATCAC 62.115 66.667 23.46 0.00 0.00 3.06
117 118 4.779733 TCTCTCGGCTCCCCACCC 62.780 72.222 0.00 0.00 0.00 4.61
118 119 2.034048 GATTCTCTCGGCTCCCCACC 62.034 65.000 0.00 0.00 0.00 4.61
119 120 1.443828 GATTCTCTCGGCTCCCCAC 59.556 63.158 0.00 0.00 0.00 4.61
120 121 1.762460 GGATTCTCTCGGCTCCCCA 60.762 63.158 0.00 0.00 0.00 4.96
121 122 1.124477 ATGGATTCTCTCGGCTCCCC 61.124 60.000 0.00 0.00 0.00 4.81
122 123 0.034616 CATGGATTCTCTCGGCTCCC 59.965 60.000 0.00 0.00 0.00 4.30
123 124 0.755686 ACATGGATTCTCTCGGCTCC 59.244 55.000 0.00 0.00 0.00 4.70
124 125 1.863267 CACATGGATTCTCTCGGCTC 58.137 55.000 0.00 0.00 0.00 4.70
125 126 0.179062 GCACATGGATTCTCTCGGCT 60.179 55.000 0.00 0.00 0.00 5.52
126 127 0.462581 TGCACATGGATTCTCTCGGC 60.463 55.000 0.00 0.00 0.00 5.54
127 128 2.028420 TTGCACATGGATTCTCTCGG 57.972 50.000 0.00 0.00 0.00 4.63
128 129 4.391216 GGATATTGCACATGGATTCTCTCG 59.609 45.833 0.00 0.00 0.00 4.04
129 130 5.311265 TGGATATTGCACATGGATTCTCTC 58.689 41.667 0.00 0.00 0.00 3.20
130 131 5.314718 TGGATATTGCACATGGATTCTCT 57.685 39.130 0.00 0.00 0.00 3.10
131 132 6.585695 AATGGATATTGCACATGGATTCTC 57.414 37.500 0.00 0.00 0.00 2.87
132 133 6.989155 AAATGGATATTGCACATGGATTCT 57.011 33.333 0.00 0.00 0.00 2.40
133 134 8.579006 TCTAAAATGGATATTGCACATGGATTC 58.421 33.333 0.00 0.00 0.00 2.52
134 135 8.481492 TCTAAAATGGATATTGCACATGGATT 57.519 30.769 0.00 0.00 0.00 3.01
135 136 7.946219 TCTCTAAAATGGATATTGCACATGGAT 59.054 33.333 0.00 0.00 0.00 3.41
136 137 7.289310 TCTCTAAAATGGATATTGCACATGGA 58.711 34.615 0.00 0.00 0.00 3.41
137 138 7.514784 TCTCTAAAATGGATATTGCACATGG 57.485 36.000 0.00 0.00 0.00 3.66
138 139 9.976511 ATTTCTCTAAAATGGATATTGCACATG 57.023 29.630 0.00 0.00 0.00 3.21
139 140 9.976511 CATTTCTCTAAAATGGATATTGCACAT 57.023 29.630 0.00 0.00 34.80 3.21
140 141 7.922278 GCATTTCTCTAAAATGGATATTGCACA 59.078 33.333 11.30 0.00 37.92 4.57
141 142 7.922278 TGCATTTCTCTAAAATGGATATTGCAC 59.078 33.333 11.30 0.00 37.92 4.57
142 143 7.922278 GTGCATTTCTCTAAAATGGATATTGCA 59.078 33.333 11.30 0.00 39.51 4.08
143 144 7.113965 CGTGCATTTCTCTAAAATGGATATTGC 59.886 37.037 11.30 0.00 39.51 3.56
144 145 7.592533 CCGTGCATTTCTCTAAAATGGATATTG 59.407 37.037 11.30 2.75 39.51 1.90
145 146 7.285401 ACCGTGCATTTCTCTAAAATGGATATT 59.715 33.333 11.30 0.00 39.51 1.28
146 147 6.772716 ACCGTGCATTTCTCTAAAATGGATAT 59.227 34.615 11.30 0.00 39.51 1.63
147 148 6.119536 ACCGTGCATTTCTCTAAAATGGATA 58.880 36.000 11.30 0.00 39.51 2.59
148 149 4.949856 ACCGTGCATTTCTCTAAAATGGAT 59.050 37.500 11.30 0.00 39.51 3.41
149 150 4.331968 ACCGTGCATTTCTCTAAAATGGA 58.668 39.130 11.30 6.62 37.92 3.41
150 151 4.701956 ACCGTGCATTTCTCTAAAATGG 57.298 40.909 11.30 0.00 37.92 3.16
151 152 6.176975 TGTACCGTGCATTTCTCTAAAATG 57.823 37.500 6.21 6.21 39.84 2.32
152 153 6.597672 TCATGTACCGTGCATTTCTCTAAAAT 59.402 34.615 0.00 0.00 0.00 1.82
153 154 5.935206 TCATGTACCGTGCATTTCTCTAAAA 59.065 36.000 0.00 0.00 0.00 1.52
154 155 5.483811 TCATGTACCGTGCATTTCTCTAAA 58.516 37.500 0.00 0.00 0.00 1.85
155 156 5.079689 TCATGTACCGTGCATTTCTCTAA 57.920 39.130 0.00 0.00 0.00 2.10
156 157 4.729227 TCATGTACCGTGCATTTCTCTA 57.271 40.909 0.00 0.00 0.00 2.43
157 158 3.610040 TCATGTACCGTGCATTTCTCT 57.390 42.857 0.00 0.00 0.00 3.10
158 159 4.882671 AATCATGTACCGTGCATTTCTC 57.117 40.909 0.00 0.00 0.00 2.87
159 160 6.751514 TTTAATCATGTACCGTGCATTTCT 57.248 33.333 0.00 0.00 0.00 2.52
160 161 7.985634 AATTTAATCATGTACCGTGCATTTC 57.014 32.000 0.00 0.00 0.00 2.17
161 162 8.031864 TCAAATTTAATCATGTACCGTGCATTT 58.968 29.630 0.00 0.00 0.00 2.32
162 163 7.542890 TCAAATTTAATCATGTACCGTGCATT 58.457 30.769 0.00 0.00 0.00 3.56
163 164 7.094508 TCAAATTTAATCATGTACCGTGCAT 57.905 32.000 0.00 0.00 0.00 3.96
164 165 6.502136 TCAAATTTAATCATGTACCGTGCA 57.498 33.333 0.00 0.00 0.00 4.57
165 166 6.804295 TGTTCAAATTTAATCATGTACCGTGC 59.196 34.615 0.00 0.00 0.00 5.34
166 167 8.797215 CATGTTCAAATTTAATCATGTACCGTG 58.203 33.333 14.80 0.00 0.00 4.94
167 168 8.735315 TCATGTTCAAATTTAATCATGTACCGT 58.265 29.630 18.88 0.00 35.60 4.83
168 169 9.566530 TTCATGTTCAAATTTAATCATGTACCG 57.433 29.630 18.88 0.00 35.60 4.02
171 172 9.585099 GCCTTCATGTTCAAATTTAATCATGTA 57.415 29.630 18.88 13.19 35.60 2.29
172 173 7.550196 GGCCTTCATGTTCAAATTTAATCATGT 59.450 33.333 18.88 0.00 35.60 3.21
173 174 7.767198 AGGCCTTCATGTTCAAATTTAATCATG 59.233 33.333 0.00 15.98 35.47 3.07
174 175 7.854337 AGGCCTTCATGTTCAAATTTAATCAT 58.146 30.769 0.00 0.00 0.00 2.45
175 176 7.243604 AGGCCTTCATGTTCAAATTTAATCA 57.756 32.000 0.00 0.00 0.00 2.57
176 177 8.445493 CAAAGGCCTTCATGTTCAAATTTAATC 58.555 33.333 20.79 0.00 0.00 1.75
177 178 7.938490 ACAAAGGCCTTCATGTTCAAATTTAAT 59.062 29.630 20.79 0.00 0.00 1.40
178 179 7.278875 ACAAAGGCCTTCATGTTCAAATTTAA 58.721 30.769 20.79 0.00 0.00 1.52
179 180 6.825610 ACAAAGGCCTTCATGTTCAAATTTA 58.174 32.000 20.79 0.00 0.00 1.40
180 181 5.683681 ACAAAGGCCTTCATGTTCAAATTT 58.316 33.333 20.79 0.00 0.00 1.82
181 182 5.294734 ACAAAGGCCTTCATGTTCAAATT 57.705 34.783 20.79 0.00 0.00 1.82
182 183 4.961438 ACAAAGGCCTTCATGTTCAAAT 57.039 36.364 20.79 0.00 0.00 2.32
183 184 4.751767 AACAAAGGCCTTCATGTTCAAA 57.248 36.364 23.97 0.00 30.58 2.69
184 185 4.751767 AAACAAAGGCCTTCATGTTCAA 57.248 36.364 27.75 0.00 35.09 2.69
185 186 4.751767 AAAACAAAGGCCTTCATGTTCA 57.248 36.364 27.75 0.00 35.09 3.18
186 187 6.526674 CGTATAAAACAAAGGCCTTCATGTTC 59.473 38.462 27.75 17.37 35.09 3.18
187 188 6.015772 ACGTATAAAACAAAGGCCTTCATGTT 60.016 34.615 23.97 23.97 37.59 2.71
188 189 5.475564 ACGTATAAAACAAAGGCCTTCATGT 59.524 36.000 20.79 17.88 0.00 3.21
189 190 5.949735 ACGTATAAAACAAAGGCCTTCATG 58.050 37.500 20.79 17.14 0.00 3.07
190 191 5.708230 TGACGTATAAAACAAAGGCCTTCAT 59.292 36.000 20.79 7.09 0.00 2.57
191 192 5.064558 TGACGTATAAAACAAAGGCCTTCA 58.935 37.500 20.79 4.46 0.00 3.02
192 193 5.616488 TGACGTATAAAACAAAGGCCTTC 57.384 39.130 20.79 1.35 0.00 3.46
193 194 5.621329 GCATGACGTATAAAACAAAGGCCTT 60.621 40.000 13.78 13.78 0.00 4.35
194 195 4.142469 GCATGACGTATAAAACAAAGGCCT 60.142 41.667 0.00 0.00 0.00 5.19
195 196 4.102649 GCATGACGTATAAAACAAAGGCC 58.897 43.478 0.00 0.00 0.00 5.19
196 197 4.102649 GGCATGACGTATAAAACAAAGGC 58.897 43.478 0.00 0.00 0.00 4.35
197 198 5.303747 TGGCATGACGTATAAAACAAAGG 57.696 39.130 0.00 0.00 0.00 3.11
198 199 7.810766 AAATGGCATGACGTATAAAACAAAG 57.189 32.000 0.00 0.00 0.00 2.77
199 200 8.594881 AAAAATGGCATGACGTATAAAACAAA 57.405 26.923 0.00 0.00 0.00 2.83
200 201 8.085296 AGAAAAATGGCATGACGTATAAAACAA 58.915 29.630 0.00 0.00 0.00 2.83
201 202 7.540400 CAGAAAAATGGCATGACGTATAAAACA 59.460 33.333 0.00 0.00 0.00 2.83
202 203 7.540745 ACAGAAAAATGGCATGACGTATAAAAC 59.459 33.333 0.00 0.00 0.00 2.43
203 204 7.540400 CACAGAAAAATGGCATGACGTATAAAA 59.460 33.333 0.00 0.00 0.00 1.52
204 205 7.026562 CACAGAAAAATGGCATGACGTATAAA 58.973 34.615 0.00 0.00 0.00 1.40
205 206 6.150307 ACACAGAAAAATGGCATGACGTATAA 59.850 34.615 0.00 0.00 0.00 0.98
206 207 5.645929 ACACAGAAAAATGGCATGACGTATA 59.354 36.000 0.00 0.00 0.00 1.47
207 208 4.458989 ACACAGAAAAATGGCATGACGTAT 59.541 37.500 0.00 0.00 0.00 3.06
208 209 3.818210 ACACAGAAAAATGGCATGACGTA 59.182 39.130 0.00 0.00 0.00 3.57
209 210 2.622942 ACACAGAAAAATGGCATGACGT 59.377 40.909 0.00 0.00 0.00 4.34
210 211 3.287312 ACACAGAAAAATGGCATGACG 57.713 42.857 0.00 0.00 0.00 4.35
211 212 4.370917 ACAACACAGAAAAATGGCATGAC 58.629 39.130 0.00 0.00 0.00 3.06
212 213 4.669206 ACAACACAGAAAAATGGCATGA 57.331 36.364 0.00 0.00 0.00 3.07
213 214 5.738118 AAACAACACAGAAAAATGGCATG 57.262 34.783 0.00 0.00 0.00 4.06
214 215 7.552330 AGTTAAAACAACACAGAAAAATGGCAT 59.448 29.630 0.00 0.00 0.00 4.40
215 216 6.876257 AGTTAAAACAACACAGAAAAATGGCA 59.124 30.769 0.00 0.00 0.00 4.92
216 217 7.179410 CAGTTAAAACAACACAGAAAAATGGC 58.821 34.615 0.00 0.00 0.00 4.40
217 218 7.333174 ACCAGTTAAAACAACACAGAAAAATGG 59.667 33.333 0.00 0.00 37.00 3.16
218 219 8.250538 ACCAGTTAAAACAACACAGAAAAATG 57.749 30.769 0.00 0.00 0.00 2.32
219 220 8.840833 AACCAGTTAAAACAACACAGAAAAAT 57.159 26.923 0.00 0.00 0.00 1.82
220 221 9.413048 CTAACCAGTTAAAACAACACAGAAAAA 57.587 29.630 0.00 0.00 0.00 1.94
221 222 8.794553 TCTAACCAGTTAAAACAACACAGAAAA 58.205 29.630 0.00 0.00 0.00 2.29
222 223 8.338072 TCTAACCAGTTAAAACAACACAGAAA 57.662 30.769 0.00 0.00 0.00 2.52
223 224 7.825270 TCTCTAACCAGTTAAAACAACACAGAA 59.175 33.333 0.00 0.00 0.00 3.02
224 225 7.332557 TCTCTAACCAGTTAAAACAACACAGA 58.667 34.615 0.00 0.00 0.00 3.41
225 226 7.548196 TCTCTAACCAGTTAAAACAACACAG 57.452 36.000 0.00 0.00 0.00 3.66
226 227 7.925043 TTCTCTAACCAGTTAAAACAACACA 57.075 32.000 0.00 0.00 0.00 3.72
227 228 8.617809 TCATTCTCTAACCAGTTAAAACAACAC 58.382 33.333 0.00 0.00 0.00 3.32
228 229 8.740123 TCATTCTCTAACCAGTTAAAACAACA 57.260 30.769 0.00 0.00 0.00 3.33
229 230 8.837389 ACTCATTCTCTAACCAGTTAAAACAAC 58.163 33.333 0.00 0.00 0.00 3.32
230 231 8.974060 ACTCATTCTCTAACCAGTTAAAACAA 57.026 30.769 0.00 0.00 0.00 2.83
231 232 8.974060 AACTCATTCTCTAACCAGTTAAAACA 57.026 30.769 0.00 0.00 0.00 2.83
232 233 8.504815 GGAACTCATTCTCTAACCAGTTAAAAC 58.495 37.037 0.00 0.00 34.98 2.43
233 234 8.215050 TGGAACTCATTCTCTAACCAGTTAAAA 58.785 33.333 0.00 0.00 34.98 1.52
234 235 7.741785 TGGAACTCATTCTCTAACCAGTTAAA 58.258 34.615 0.00 0.00 34.98 1.52
235 236 7.311092 TGGAACTCATTCTCTAACCAGTTAA 57.689 36.000 0.00 0.00 34.98 2.01
236 237 6.928348 TGGAACTCATTCTCTAACCAGTTA 57.072 37.500 0.00 0.00 34.98 2.24
237 238 5.825593 TGGAACTCATTCTCTAACCAGTT 57.174 39.130 0.00 0.00 34.98 3.16
238 239 5.825593 TTGGAACTCATTCTCTAACCAGT 57.174 39.130 0.00 0.00 34.98 4.00
239 240 7.693969 ATTTTGGAACTCATTCTCTAACCAG 57.306 36.000 0.00 0.00 34.98 4.00
240 241 9.396022 GATATTTTGGAACTCATTCTCTAACCA 57.604 33.333 0.00 0.00 34.98 3.67
241 242 9.396022 TGATATTTTGGAACTCATTCTCTAACC 57.604 33.333 0.00 0.00 34.98 2.85
244 245 9.605275 CACTGATATTTTGGAACTCATTCTCTA 57.395 33.333 0.00 0.00 34.98 2.43
245 246 8.105829 ACACTGATATTTTGGAACTCATTCTCT 58.894 33.333 0.00 0.00 34.98 3.10
246 247 8.273780 ACACTGATATTTTGGAACTCATTCTC 57.726 34.615 0.00 0.00 34.98 2.87
247 248 8.641498 AACACTGATATTTTGGAACTCATTCT 57.359 30.769 0.00 0.00 34.98 2.40
251 252 8.792633 CCTTAAACACTGATATTTTGGAACTCA 58.207 33.333 0.00 0.00 0.00 3.41
252 253 8.793592 ACCTTAAACACTGATATTTTGGAACTC 58.206 33.333 0.00 0.00 0.00 3.01
253 254 8.706322 ACCTTAAACACTGATATTTTGGAACT 57.294 30.769 0.00 0.00 0.00 3.01
254 255 9.758651 AAACCTTAAACACTGATATTTTGGAAC 57.241 29.630 0.00 0.00 0.00 3.62
262 263 9.609346 ACGCTATTAAACCTTAAACACTGATAT 57.391 29.630 0.00 0.00 0.00 1.63
263 264 9.090692 GACGCTATTAAACCTTAAACACTGATA 57.909 33.333 0.00 0.00 0.00 2.15
264 265 7.604927 TGACGCTATTAAACCTTAAACACTGAT 59.395 33.333 0.00 0.00 0.00 2.90
265 266 6.930164 TGACGCTATTAAACCTTAAACACTGA 59.070 34.615 0.00 0.00 0.00 3.41
266 267 7.013529 GTGACGCTATTAAACCTTAAACACTG 58.986 38.462 0.00 0.00 0.00 3.66
267 268 6.707161 TGTGACGCTATTAAACCTTAAACACT 59.293 34.615 0.00 0.00 0.00 3.55
268 269 6.890558 TGTGACGCTATTAAACCTTAAACAC 58.109 36.000 0.00 0.00 0.00 3.32
269 270 6.930164 TCTGTGACGCTATTAAACCTTAAACA 59.070 34.615 0.00 0.00 0.00 2.83
270 271 7.355332 TCTGTGACGCTATTAAACCTTAAAC 57.645 36.000 0.00 0.00 0.00 2.01
271 272 7.966246 TTCTGTGACGCTATTAAACCTTAAA 57.034 32.000 0.00 0.00 0.00 1.52
272 273 7.966246 TTTCTGTGACGCTATTAAACCTTAA 57.034 32.000 0.00 0.00 0.00 1.85
273 274 7.966246 TTTTCTGTGACGCTATTAAACCTTA 57.034 32.000 0.00 0.00 0.00 2.69
274 275 6.870971 TTTTCTGTGACGCTATTAAACCTT 57.129 33.333 0.00 0.00 0.00 3.50
275 276 6.870971 TTTTTCTGTGACGCTATTAAACCT 57.129 33.333 0.00 0.00 0.00 3.50
276 277 6.526674 CCATTTTTCTGTGACGCTATTAAACC 59.473 38.462 0.00 0.00 0.00 3.27
277 278 7.081976 ACCATTTTTCTGTGACGCTATTAAAC 58.918 34.615 0.00 0.00 0.00 2.01
278 279 7.209471 ACCATTTTTCTGTGACGCTATTAAA 57.791 32.000 0.00 0.00 0.00 1.52
279 280 6.811253 ACCATTTTTCTGTGACGCTATTAA 57.189 33.333 0.00 0.00 0.00 1.40
280 281 6.811253 AACCATTTTTCTGTGACGCTATTA 57.189 33.333 0.00 0.00 0.00 0.98
281 282 5.705609 AACCATTTTTCTGTGACGCTATT 57.294 34.783 0.00 0.00 0.00 1.73
282 283 5.705609 AAACCATTTTTCTGTGACGCTAT 57.294 34.783 0.00 0.00 0.00 2.97
283 284 5.508200 AAAACCATTTTTCTGTGACGCTA 57.492 34.783 0.00 0.00 27.97 4.26
284 285 4.359706 GAAAACCATTTTTCTGTGACGCT 58.640 39.130 3.17 0.00 44.99 5.07
285 286 4.692371 GAAAACCATTTTTCTGTGACGC 57.308 40.909 3.17 0.00 44.99 5.19
294 295 5.464069 AGTACCTCCCAGAAAACCATTTTT 58.536 37.500 0.00 0.00 37.65 1.94
295 296 5.074746 AGTACCTCCCAGAAAACCATTTT 57.925 39.130 0.00 0.00 35.12 1.82
296 297 4.741928 AGTACCTCCCAGAAAACCATTT 57.258 40.909 0.00 0.00 0.00 2.32
297 298 4.508584 GGAAGTACCTCCCAGAAAACCATT 60.509 45.833 0.00 0.00 35.41 3.16
298 299 3.010250 GGAAGTACCTCCCAGAAAACCAT 59.990 47.826 0.00 0.00 35.41 3.55
299 300 2.374170 GGAAGTACCTCCCAGAAAACCA 59.626 50.000 0.00 0.00 35.41 3.67
300 301 3.069079 GGAAGTACCTCCCAGAAAACC 57.931 52.381 0.00 0.00 35.41 3.27
321 322 2.855963 GCGGACGAAAACATTCGATAGA 59.144 45.455 16.81 0.00 46.52 1.98
322 323 2.034001 GGCGGACGAAAACATTCGATAG 60.034 50.000 16.81 8.41 46.52 2.08
323 324 1.928503 GGCGGACGAAAACATTCGATA 59.071 47.619 16.81 0.00 46.52 2.92
324 325 0.725117 GGCGGACGAAAACATTCGAT 59.275 50.000 16.81 2.50 46.52 3.59
325 326 2.155665 GGCGGACGAAAACATTCGA 58.844 52.632 16.81 0.00 46.52 3.71
336 337 3.770424 GTTCGGTTTCGGCGGACG 61.770 66.667 7.21 0.00 46.11 4.79
337 338 3.770424 CGTTCGGTTTCGGCGGAC 61.770 66.667 7.21 6.41 36.95 4.79
338 339 3.788616 AACGTTCGGTTTCGGCGGA 62.789 57.895 7.21 0.00 38.59 5.54
339 340 3.285776 GAACGTTCGGTTTCGGCGG 62.286 63.158 13.36 0.00 39.50 6.13
340 341 2.169327 GAACGTTCGGTTTCGGCG 59.831 61.111 13.36 0.00 39.50 6.46
341 342 2.552768 GGAACGTTCGGTTTCGGC 59.447 61.111 21.34 1.81 39.50 5.54
342 343 1.562575 CTGGGAACGTTCGGTTTCGG 61.563 60.000 21.34 9.69 39.50 4.30
343 344 1.562575 CCTGGGAACGTTCGGTTTCG 61.563 60.000 21.34 6.88 39.50 3.46
344 345 1.232621 CCCTGGGAACGTTCGGTTTC 61.233 60.000 21.34 7.52 39.50 2.78
345 346 1.228033 CCCTGGGAACGTTCGGTTT 60.228 57.895 21.34 0.00 39.50 3.27
346 347 2.142104 TCCCTGGGAACGTTCGGTT 61.142 57.895 21.34 0.00 42.96 4.44
347 348 2.524887 TCCCTGGGAACGTTCGGT 60.525 61.111 21.34 0.00 0.00 4.69
348 349 2.047560 GTCCCTGGGAACGTTCGG 60.048 66.667 19.06 16.45 31.38 4.30
349 350 0.321298 AATGTCCCTGGGAACGTTCG 60.321 55.000 19.06 8.34 31.38 3.95
350 351 1.810755 GAAATGTCCCTGGGAACGTTC 59.189 52.381 19.06 20.14 31.38 3.95
351 352 1.144093 TGAAATGTCCCTGGGAACGTT 59.856 47.619 19.06 15.60 31.38 3.99
352 353 0.768622 TGAAATGTCCCTGGGAACGT 59.231 50.000 19.06 10.40 31.38 3.99
353 354 2.128771 ATGAAATGTCCCTGGGAACG 57.871 50.000 19.06 0.00 31.38 3.95
354 355 3.578282 ACAAATGAAATGTCCCTGGGAAC 59.422 43.478 19.06 12.36 31.38 3.62
355 356 3.855668 ACAAATGAAATGTCCCTGGGAA 58.144 40.909 19.06 8.54 31.38 3.97
356 357 3.541242 ACAAATGAAATGTCCCTGGGA 57.459 42.857 12.53 12.53 0.00 4.37
357 358 7.264947 GTTTATACAAATGAAATGTCCCTGGG 58.735 38.462 6.33 6.33 32.27 4.45
358 359 6.972328 CGTTTATACAAATGAAATGTCCCTGG 59.028 38.462 0.00 0.00 33.22 4.45
359 360 6.972328 CCGTTTATACAAATGAAATGTCCCTG 59.028 38.462 0.00 0.00 33.22 4.45
360 361 6.887545 TCCGTTTATACAAATGAAATGTCCCT 59.112 34.615 0.00 0.00 33.22 4.20
361 362 7.090953 TCCGTTTATACAAATGAAATGTCCC 57.909 36.000 0.00 0.00 33.22 4.46
362 363 8.856247 GTTTCCGTTTATACAAATGAAATGTCC 58.144 33.333 0.00 0.00 33.55 4.02
363 364 8.856247 GGTTTCCGTTTATACAAATGAAATGTC 58.144 33.333 0.00 0.00 33.55 3.06
364 365 7.815549 GGGTTTCCGTTTATACAAATGAAATGT 59.184 33.333 0.00 0.00 33.55 2.71
365 366 8.032451 AGGGTTTCCGTTTATACAAATGAAATG 58.968 33.333 0.00 0.00 38.33 2.32
366 367 8.129496 AGGGTTTCCGTTTATACAAATGAAAT 57.871 30.769 0.00 0.00 38.33 2.17
367 368 7.527568 AGGGTTTCCGTTTATACAAATGAAA 57.472 32.000 0.00 0.00 38.33 2.69
368 369 7.148355 GAGGGTTTCCGTTTATACAAATGAA 57.852 36.000 0.00 0.00 38.33 2.57
369 370 6.746745 GAGGGTTTCCGTTTATACAAATGA 57.253 37.500 0.00 0.00 38.33 2.57
599 600 6.170506 TGTGTTTGTACCTATCAATGGAGAC 58.829 40.000 0.00 0.00 0.00 3.36
600 601 6.367374 TGTGTTTGTACCTATCAATGGAGA 57.633 37.500 0.00 0.00 0.00 3.71
601 602 7.447374 TTTGTGTTTGTACCTATCAATGGAG 57.553 36.000 0.00 0.00 0.00 3.86
650 651 8.596293 ACCATTGAAATGATATTTCACCTTTGT 58.404 29.630 14.55 7.14 38.05 2.83
656 657 8.394877 TCACGTACCATTGAAATGATATTTCAC 58.605 33.333 14.55 4.18 38.05 3.18
678 679 2.033424 TCATCTCGCTAGGACATTCACG 59.967 50.000 0.00 0.00 0.00 4.35
824 852 2.875933 GTGTGTGGAAATGACGGAGAAA 59.124 45.455 0.00 0.00 0.00 2.52
852 880 1.624813 CGTGGGGTGGTTAAGTAGGAA 59.375 52.381 0.00 0.00 0.00 3.36
1059 1087 4.081030 CCGAAGCAGCAGCACACG 62.081 66.667 3.17 5.78 45.49 4.49
1128 1156 1.783031 CGTAGCTGAGCGGGTCGTAT 61.783 60.000 0.00 0.00 0.00 3.06
1161 1189 3.083349 CTGTCATCGGGGCCCTCA 61.083 66.667 24.38 8.99 0.00 3.86
1218 1246 1.038130 GGAAGCTGCGGTAGAGGAGA 61.038 60.000 0.00 0.00 0.00 3.71
1323 1351 5.508124 GCATACGCTAGCAAAAGATCTAG 57.492 43.478 16.45 0.00 36.31 2.43
1340 1368 2.666508 CCGAACACACTACACAGCATAC 59.333 50.000 0.00 0.00 0.00 2.39
1341 1369 2.297880 ACCGAACACACTACACAGCATA 59.702 45.455 0.00 0.00 0.00 3.14
1342 1370 1.070134 ACCGAACACACTACACAGCAT 59.930 47.619 0.00 0.00 0.00 3.79
1343 1371 0.462375 ACCGAACACACTACACAGCA 59.538 50.000 0.00 0.00 0.00 4.41
1344 1372 0.859232 CACCGAACACACTACACAGC 59.141 55.000 0.00 0.00 0.00 4.40
1346 1374 1.205179 ACACACCGAACACACTACACA 59.795 47.619 0.00 0.00 0.00 3.72
1347 1375 1.591158 CACACACCGAACACACTACAC 59.409 52.381 0.00 0.00 0.00 2.90
1348 1376 1.205179 ACACACACCGAACACACTACA 59.795 47.619 0.00 0.00 0.00 2.74
1349 1377 1.856597 GACACACACCGAACACACTAC 59.143 52.381 0.00 0.00 0.00 2.73
1350 1378 1.202440 GGACACACACCGAACACACTA 60.202 52.381 0.00 0.00 0.00 2.74
1352 1380 2.011453 GGACACACACCGAACACAC 58.989 57.895 0.00 0.00 0.00 3.82
1367 1395 4.616953 ACAAACATGGAAATGAAACGGAC 58.383 39.130 0.00 0.00 0.00 4.79
1405 1433 9.563748 CATCTTTTAGCTACTAGTAGGAGTACT 57.436 37.037 27.24 18.36 42.49 2.73
1406 1434 9.341078 ACATCTTTTAGCTACTAGTAGGAGTAC 57.659 37.037 27.24 12.85 33.87 2.73
1407 1435 9.917887 AACATCTTTTAGCTACTAGTAGGAGTA 57.082 33.333 27.24 0.19 33.87 2.59
1408 1436 8.688151 CAACATCTTTTAGCTACTAGTAGGAGT 58.312 37.037 27.24 13.23 33.87 3.85
1409 1437 8.904834 TCAACATCTTTTAGCTACTAGTAGGAG 58.095 37.037 27.24 4.87 33.87 3.69
1410 1438 8.818622 TCAACATCTTTTAGCTACTAGTAGGA 57.181 34.615 27.24 16.63 33.87 2.94
1411 1439 9.685828 GATCAACATCTTTTAGCTACTAGTAGG 57.314 37.037 27.24 12.37 33.87 3.18
1414 1442 7.702772 CGTGATCAACATCTTTTAGCTACTAGT 59.297 37.037 0.00 0.00 0.00 2.57
1415 1443 7.702772 ACGTGATCAACATCTTTTAGCTACTAG 59.297 37.037 0.00 0.00 0.00 2.57
1416 1444 7.544622 ACGTGATCAACATCTTTTAGCTACTA 58.455 34.615 0.00 0.00 0.00 1.82
1417 1445 6.398918 ACGTGATCAACATCTTTTAGCTACT 58.601 36.000 0.00 0.00 0.00 2.57
1418 1446 6.648725 ACGTGATCAACATCTTTTAGCTAC 57.351 37.500 0.00 0.00 0.00 3.58
1486 1514 7.106439 TCTCATGGAGAAACTAACTGATCTC 57.894 40.000 0.00 0.00 35.59 2.75
1532 1560 0.737715 CTTCGTAGGTGCAGCAGACC 60.738 60.000 19.63 0.00 0.00 3.85
1533 1561 0.038159 ACTTCGTAGGTGCAGCAGAC 60.038 55.000 19.63 14.19 0.00 3.51
1534 1562 1.201647 GTACTTCGTAGGTGCAGCAGA 59.798 52.381 19.63 11.41 0.00 4.26
1535 1563 1.067846 TGTACTTCGTAGGTGCAGCAG 60.068 52.381 19.63 8.66 0.00 4.24
1536 1564 0.963225 TGTACTTCGTAGGTGCAGCA 59.037 50.000 19.63 0.00 0.00 4.41
1537 1565 2.194271 GATGTACTTCGTAGGTGCAGC 58.806 52.381 8.11 8.11 33.34 5.25
1538 1566 3.179830 GTGATGTACTTCGTAGGTGCAG 58.820 50.000 4.48 0.00 33.34 4.41
1539 1567 2.094390 GGTGATGTACTTCGTAGGTGCA 60.094 50.000 4.48 0.00 34.22 4.57
1564 1592 2.107366 TCTAGCCAATCCACGTGATCA 58.893 47.619 19.30 0.00 31.61 2.92
1583 1611 3.965292 TCGACACTAGAATGGATCGTC 57.035 47.619 0.00 0.00 32.65 4.20
1584 1612 3.945921 TCTTCGACACTAGAATGGATCGT 59.054 43.478 0.00 0.00 32.65 3.73
1590 1626 1.849219 GCGCTCTTCGACACTAGAATG 59.151 52.381 0.00 0.00 41.67 2.67
1643 1680 5.241728 AGTGATCTACCCTTGTTTTTCTTGC 59.758 40.000 0.00 0.00 0.00 4.01
1672 1713 1.318158 CCCCACCAGCTGCTTTCATC 61.318 60.000 8.66 0.00 0.00 2.92
1684 1725 3.712218 TGACGACATATATTTCCCCACCA 59.288 43.478 0.00 0.00 0.00 4.17
1769 1822 9.860898 TGTATAGTCCAATATGAATCAATCGAG 57.139 33.333 0.00 0.00 0.00 4.04
1783 1836 3.938963 CGCTGGTTGTTGTATAGTCCAAT 59.061 43.478 0.00 0.00 0.00 3.16
1796 1849 2.186826 GTCCTTGCACGCTGGTTGT 61.187 57.895 0.00 0.00 0.00 3.32
1798 1851 2.594592 GGTCCTTGCACGCTGGTT 60.595 61.111 0.00 0.00 0.00 3.67
1799 1852 3.560251 AGGTCCTTGCACGCTGGT 61.560 61.111 0.00 0.00 0.00 4.00
1800 1853 3.052082 CAGGTCCTTGCACGCTGG 61.052 66.667 0.00 0.00 0.00 4.85
1801 1854 3.052082 CCAGGTCCTTGCACGCTG 61.052 66.667 0.00 0.00 0.00 5.18
1815 1868 5.756833 ACCAGAAGTAAAAAGTTACGTCCAG 59.243 40.000 0.00 4.38 44.87 3.86
1820 1873 9.563898 AAAGAAAACCAGAAGTAAAAAGTTACG 57.436 29.630 0.00 0.00 43.78 3.18
1831 1884 6.896883 AGGTAGTACAAAGAAAACCAGAAGT 58.103 36.000 2.06 0.00 0.00 3.01
1843 1896 9.653287 TTCATCAACTGATAAGGTAGTACAAAG 57.347 33.333 2.06 0.00 32.72 2.77
1897 1950 9.994432 GCCATATAGCATTTCTCATAACAATAC 57.006 33.333 0.00 0.00 0.00 1.89
1902 1955 6.183360 GGTCGCCATATAGCATTTCTCATAAC 60.183 42.308 0.00 0.00 0.00 1.89
1928 1981 4.497507 GCTGGGAAATGCTAAATAACCGAC 60.498 45.833 0.00 0.00 0.00 4.79
1965 2018 0.458543 GTGCCAGAAGATCGAGCGAA 60.459 55.000 0.00 0.00 0.00 4.70
1966 2019 1.139734 GTGCCAGAAGATCGAGCGA 59.860 57.895 0.00 0.00 0.00 4.93
1998 2051 2.167398 AACTAGCGTGGCACCATCGT 62.167 55.000 12.86 1.72 0.00 3.73
1999 2052 1.019278 AAACTAGCGTGGCACCATCG 61.019 55.000 12.86 0.79 0.00 3.84
2006 2059 1.066358 AGTAGGGAAAACTAGCGTGGC 60.066 52.381 0.00 0.00 0.00 5.01
2012 2065 5.921408 CGCAGCTAATAGTAGGGAAAACTAG 59.079 44.000 0.00 0.00 33.15 2.57
2013 2066 5.595542 TCGCAGCTAATAGTAGGGAAAACTA 59.404 40.000 0.00 0.00 34.11 2.24
2018 2071 3.243301 CGTTCGCAGCTAATAGTAGGGAA 60.243 47.826 0.00 8.58 0.00 3.97
2019 2072 2.292569 CGTTCGCAGCTAATAGTAGGGA 59.707 50.000 0.00 0.00 0.00 4.20
2020 2073 2.607282 CCGTTCGCAGCTAATAGTAGGG 60.607 54.545 0.00 0.00 0.00 3.53
2021 2074 2.662700 CCGTTCGCAGCTAATAGTAGG 58.337 52.381 0.00 0.00 0.00 3.18
2022 2075 2.052157 GCCGTTCGCAGCTAATAGTAG 58.948 52.381 0.00 0.00 37.47 2.57
2023 2076 1.679680 AGCCGTTCGCAGCTAATAGTA 59.320 47.619 0.00 0.00 41.38 1.82
2024 2077 0.460311 AGCCGTTCGCAGCTAATAGT 59.540 50.000 0.00 0.00 41.38 2.12
2025 2078 1.132588 GAGCCGTTCGCAGCTAATAG 58.867 55.000 0.00 0.00 40.11 1.73
2026 2079 0.458260 TGAGCCGTTCGCAGCTAATA 59.542 50.000 0.00 0.00 40.11 0.98
2027 2080 1.084370 GTGAGCCGTTCGCAGCTAAT 61.084 55.000 0.00 0.00 40.11 1.73
2065 2118 6.431852 CGGTTTTCATTTTAGTTAGGGAGGAA 59.568 38.462 0.00 0.00 0.00 3.36
2066 2119 5.941647 CGGTTTTCATTTTAGTTAGGGAGGA 59.058 40.000 0.00 0.00 0.00 3.71
2077 2130 2.879646 ACACGCCTCGGTTTTCATTTTA 59.120 40.909 0.00 0.00 0.00 1.52
2096 2149 0.187117 TTTGATTCCCAGCACCCACA 59.813 50.000 0.00 0.00 0.00 4.17
2102 2155 1.976474 GCGGGTTTGATTCCCAGCA 60.976 57.895 10.89 0.00 44.81 4.41
2143 2196 1.467342 GTCCGTTCAGTGGTAAATGCC 59.533 52.381 0.00 0.00 0.00 4.40
2160 2213 6.922957 TGCATTTTATCACAAAAGACAAGTCC 59.077 34.615 0.00 0.00 0.00 3.85
2244 2297 8.374743 CCCTCTGAAAATAGGAAATTTTGGAAA 58.625 33.333 0.71 0.00 34.58 3.13
2255 2308 3.635267 CCCCTACCCCTCTGAAAATAGGA 60.635 52.174 0.00 0.00 34.58 2.94
2263 2316 0.195096 AAACACCCCTACCCCTCTGA 59.805 55.000 0.00 0.00 0.00 3.27
2273 2326 2.597455 CAAGTCCATGAAAACACCCCT 58.403 47.619 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.