Multiple sequence alignment - TraesCS6A01G145300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G145300 chr6A 100.000 6021 0 0 1 6021 123454786 123460806 0.000000e+00 11119.0
1 TraesCS6A01G145300 chr6D 94.634 3671 114 34 181 3800 102121614 102125252 0.000000e+00 5611.0
2 TraesCS6A01G145300 chr6D 95.622 731 12 6 4398 5126 102125820 102126532 0.000000e+00 1155.0
3 TraesCS6A01G145300 chr6D 98.355 547 8 1 3796 4341 102125280 102125826 0.000000e+00 959.0
4 TraesCS6A01G145300 chr6D 90.056 533 35 9 5493 6018 102126633 102127154 0.000000e+00 675.0
5 TraesCS6A01G145300 chr6D 96.939 98 3 0 5111 5208 102126549 102126646 1.340000e-36 165.0
6 TraesCS6A01G145300 chr6B 94.954 2497 78 18 851 3345 187838890 187841340 0.000000e+00 3869.0
7 TraesCS6A01G145300 chr6B 96.449 1577 35 10 3632 5197 187841840 187843406 0.000000e+00 2582.0
8 TraesCS6A01G145300 chr6B 93.352 722 32 10 139 851 187838138 187838852 0.000000e+00 1053.0
9 TraesCS6A01G145300 chr6B 100.000 293 0 0 3344 3636 187841428 187841720 5.310000e-150 542.0
10 TraesCS6A01G145300 chr6B 88.218 331 22 8 5520 5850 187843426 187843739 4.400000e-101 379.0
11 TraesCS6A01G145300 chr6B 93.793 145 7 1 3 145 684417741 684417885 3.650000e-52 217.0
12 TraesCS6A01G145300 chr5D 94.340 318 6 6 5196 5503 26619375 26619060 1.520000e-130 477.0
13 TraesCS6A01G145300 chr5D 93.248 311 8 3 5206 5505 45487995 45488303 4.280000e-121 446.0
14 TraesCS6A01G145300 chr7D 94.444 306 7 1 5208 5503 63446566 63446871 4.250000e-126 462.0
15 TraesCS6A01G145300 chr3A 93.548 310 10 1 5208 5507 399214537 399214228 2.560000e-123 453.0
16 TraesCS6A01G145300 chr3A 90.210 143 14 0 1 143 600312959 600313101 2.870000e-43 187.0
17 TraesCS6A01G145300 chr1D 96.642 268 9 0 5208 5475 487951765 487951498 4.280000e-121 446.0
18 TraesCS6A01G145300 chr1D 89.726 146 12 1 1 143 460553820 460553675 3.710000e-42 183.0
19 TraesCS6A01G145300 chr3D 92.926 311 11 2 5208 5507 277766107 277766417 5.540000e-120 442.0
20 TraesCS6A01G145300 chr3D 92.958 284 17 2 5187 5469 30415152 30415433 1.560000e-110 411.0
21 TraesCS6A01G145300 chr3D 93.525 139 9 0 1 139 395039123 395039261 2.200000e-49 207.0
22 TraesCS6A01G145300 chr4D 92.581 310 13 1 5204 5503 464509371 464509062 2.580000e-118 436.0
23 TraesCS6A01G145300 chr7B 95.817 263 11 0 5208 5470 740380853 740381115 5.580000e-115 425.0
24 TraesCS6A01G145300 chr7B 94.203 138 8 0 1 138 329852348 329852211 1.700000e-50 211.0
25 TraesCS6A01G145300 chr7B 89.362 141 15 0 1 141 639412886 639413026 1.720000e-40 178.0
26 TraesCS6A01G145300 chr5A 91.022 323 18 2 5195 5506 679143717 679143395 5.580000e-115 425.0
27 TraesCS6A01G145300 chr5A 91.367 139 11 1 1 139 350797900 350798037 7.970000e-44 189.0
28 TraesCS6A01G145300 chr5A 89.928 139 14 0 1 139 636934433 636934571 4.790000e-41 180.0
29 TraesCS6A01G145300 chr5A 92.857 42 1 1 5464 5503 536298159 536298200 6.520000e-05 60.2
30 TraesCS6A01G145300 chrUn 91.830 306 15 1 5208 5503 103114387 103114082 9.330000e-113 418.0
31 TraesCS6A01G145300 chrUn 91.497 294 15 1 5220 5503 332581845 332581552 4.370000e-106 396.0
32 TraesCS6A01G145300 chr2D 90.446 314 17 4 5206 5509 25201995 25202305 9.400000e-108 401.0
33 TraesCS6A01G145300 chr2D 90.141 142 4 1 5379 5510 521875835 521875694 6.200000e-40 176.0
34 TraesCS6A01G145300 chr4A 89.583 144 14 1 1 143 669209406 669209263 1.330000e-41 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G145300 chr6A 123454786 123460806 6020 False 11119 11119 100.0000 1 6021 1 chr6A.!!$F1 6020
1 TraesCS6A01G145300 chr6D 102121614 102127154 5540 False 1713 5611 95.1212 181 6018 5 chr6D.!!$F1 5837
2 TraesCS6A01G145300 chr6B 187838138 187843739 5601 False 1685 3869 94.5946 139 5850 5 chr6B.!!$F2 5711

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.033796 AATCATGTCTGCACCCCCAG 60.034 55.000 0.00 0.00 0.00 4.45 F
823 844 0.037590 TCCCCGTCCTCCACATTTTG 59.962 55.000 0.00 0.00 0.00 2.44 F
920 980 0.708802 TCGAGTAGGGGGAGGACTTT 59.291 55.000 0.00 0.00 0.00 2.66 F
1430 1503 0.882042 CTCGCTTGTTCACCACTGCT 60.882 55.000 0.00 0.00 0.00 4.24 F
1591 1664 1.552337 TCAAAACTGGCCAACTTTGCA 59.448 42.857 24.76 15.51 0.00 4.08 F
1595 1670 1.708341 ACTGGCCAACTTTGCATCTT 58.292 45.000 7.01 0.00 0.00 2.40 F
2365 2443 1.747355 CCCCATTTGATCTGTGCTGAC 59.253 52.381 0.00 0.00 0.00 3.51 F
2641 2720 3.010420 GTGTTACTCCCTTGAGATTGCC 58.990 50.000 0.00 0.00 41.42 4.52 F
4429 4768 6.660887 TTCACTTTTTGTGGCATTTTCTTC 57.339 33.333 0.00 0.00 46.20 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1171 1238 0.753479 TGAGATGACGAGGAGGAGGC 60.753 60.000 0.00 0.00 0.00 4.70 R
1714 1789 1.112315 AGCTATCGGTGGAGCTCAGG 61.112 60.000 17.19 0.99 46.08 3.86 R
1820 1895 3.191162 GGCACACATTTAATCACAGCAGA 59.809 43.478 0.00 0.00 0.00 4.26 R
2641 2720 5.003804 ACGAAGCTAATAAATAGGCATGGG 58.996 41.667 0.00 0.00 31.83 4.00 R
2945 3024 5.178623 TCCGCTGTTAATTTCAAGTACAGTG 59.821 40.000 0.00 0.00 35.00 3.66 R
2965 3044 5.587033 CCGTTAGGTCTTTATAATTCCGC 57.413 43.478 0.00 0.00 0.00 5.54 R
3952 4281 1.446907 CTTTCGAAGTGGCTGCAGAT 58.553 50.000 20.43 0.00 0.00 2.90 R
4499 4838 2.423892 TCTAGCCACTTCAGATCGACAC 59.576 50.000 0.00 0.00 0.00 3.67 R
5492 5865 0.040204 CCCCTCATCAGGCCTTGTTT 59.960 55.000 0.00 0.00 38.72 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.885814 TGCCTGTTCGGAACCTCT 58.114 55.556 17.62 0.00 33.16 3.69
18 19 1.671742 TGCCTGTTCGGAACCTCTC 59.328 57.895 17.62 5.68 33.16 3.20
19 20 1.079057 GCCTGTTCGGAACCTCTCC 60.079 63.158 17.62 0.00 41.40 3.71
20 21 1.827399 GCCTGTTCGGAACCTCTCCA 61.827 60.000 17.62 0.00 45.74 3.86
21 22 0.685097 CCTGTTCGGAACCTCTCCAA 59.315 55.000 17.62 0.00 45.74 3.53
22 23 1.279271 CCTGTTCGGAACCTCTCCAAT 59.721 52.381 17.62 0.00 45.74 3.16
23 24 2.622436 CTGTTCGGAACCTCTCCAATC 58.378 52.381 17.62 0.00 45.74 2.67
24 25 1.974957 TGTTCGGAACCTCTCCAATCA 59.025 47.619 17.62 0.00 45.74 2.57
25 26 2.289444 TGTTCGGAACCTCTCCAATCAC 60.289 50.000 17.62 0.00 45.74 3.06
26 27 0.530744 TCGGAACCTCTCCAATCACG 59.469 55.000 0.00 0.00 45.74 4.35
27 28 0.530744 CGGAACCTCTCCAATCACGA 59.469 55.000 0.00 0.00 45.74 4.35
28 29 1.067142 CGGAACCTCTCCAATCACGAA 60.067 52.381 0.00 0.00 45.74 3.85
29 30 2.611971 CGGAACCTCTCCAATCACGAAA 60.612 50.000 0.00 0.00 45.74 3.46
30 31 2.742589 GGAACCTCTCCAATCACGAAAC 59.257 50.000 0.00 0.00 44.67 2.78
31 32 3.557264 GGAACCTCTCCAATCACGAAACT 60.557 47.826 0.00 0.00 44.67 2.66
32 33 3.320673 ACCTCTCCAATCACGAAACTC 57.679 47.619 0.00 0.00 0.00 3.01
33 34 2.028020 ACCTCTCCAATCACGAAACTCC 60.028 50.000 0.00 0.00 0.00 3.85
34 35 2.263077 CTCTCCAATCACGAAACTCCG 58.737 52.381 0.00 0.00 0.00 4.63
35 36 0.721718 CTCCAATCACGAAACTCCGC 59.278 55.000 0.00 0.00 0.00 5.54
36 37 0.320374 TCCAATCACGAAACTCCGCT 59.680 50.000 0.00 0.00 0.00 5.52
37 38 0.721718 CCAATCACGAAACTCCGCTC 59.278 55.000 0.00 0.00 0.00 5.03
38 39 0.366871 CAATCACGAAACTCCGCTCG 59.633 55.000 0.00 0.00 40.87 5.03
39 40 0.736325 AATCACGAAACTCCGCTCGG 60.736 55.000 1.14 1.14 39.38 4.63
40 41 3.479269 CACGAAACTCCGCTCGGC 61.479 66.667 2.96 0.00 39.38 5.54
55 56 4.443266 GGCGCGAGGAGCTCAGTT 62.443 66.667 17.19 0.00 45.59 3.16
56 57 2.433318 GCGCGAGGAGCTCAGTTT 60.433 61.111 17.19 0.00 45.59 2.66
57 58 2.734673 GCGCGAGGAGCTCAGTTTG 61.735 63.158 17.19 5.57 45.59 2.93
58 59 1.080501 CGCGAGGAGCTCAGTTTGA 60.081 57.895 17.19 0.00 45.59 2.69
59 60 1.075425 CGCGAGGAGCTCAGTTTGAG 61.075 60.000 17.19 2.59 46.90 3.02
67 68 3.239861 CTCAGTTTGAGCCACTCCC 57.760 57.895 0.00 0.00 37.72 4.30
68 69 0.689623 CTCAGTTTGAGCCACTCCCT 59.310 55.000 0.00 0.00 37.72 4.20
69 70 0.397941 TCAGTTTGAGCCACTCCCTG 59.602 55.000 0.00 0.00 0.00 4.45
70 71 1.073897 AGTTTGAGCCACTCCCTGC 59.926 57.895 0.00 0.00 0.00 4.85
71 72 1.228245 GTTTGAGCCACTCCCTGCA 60.228 57.895 0.00 0.00 0.00 4.41
72 73 0.823356 GTTTGAGCCACTCCCTGCAA 60.823 55.000 0.00 0.00 0.00 4.08
73 74 0.112995 TTTGAGCCACTCCCTGCAAT 59.887 50.000 0.00 0.00 0.00 3.56
74 75 0.112995 TTGAGCCACTCCCTGCAATT 59.887 50.000 0.00 0.00 0.00 2.32
75 76 0.609957 TGAGCCACTCCCTGCAATTG 60.610 55.000 0.00 0.00 0.00 2.32
76 77 0.610232 GAGCCACTCCCTGCAATTGT 60.610 55.000 7.40 0.00 0.00 2.71
77 78 0.896940 AGCCACTCCCTGCAATTGTG 60.897 55.000 7.40 0.56 0.00 3.33
87 88 2.180017 CAATTGTGCTGCCGCTCC 59.820 61.111 0.70 0.00 36.97 4.70
88 89 3.064324 AATTGTGCTGCCGCTCCC 61.064 61.111 0.70 0.00 36.97 4.30
89 90 3.574074 AATTGTGCTGCCGCTCCCT 62.574 57.895 0.70 0.00 36.97 4.20
90 91 3.984193 ATTGTGCTGCCGCTCCCTC 62.984 63.158 0.70 0.00 36.97 4.30
110 111 2.435586 CTCCGGGAGCTGCAGTTG 60.436 66.667 16.64 0.00 0.00 3.16
111 112 3.241530 TCCGGGAGCTGCAGTTGT 61.242 61.111 16.64 0.00 0.00 3.32
112 113 3.052082 CCGGGAGCTGCAGTTGTG 61.052 66.667 16.64 0.92 0.00 3.33
113 114 3.052082 CGGGAGCTGCAGTTGTGG 61.052 66.667 16.64 0.00 0.00 4.17
114 115 2.431683 GGGAGCTGCAGTTGTGGA 59.568 61.111 16.64 0.00 0.00 4.02
115 116 1.673665 GGGAGCTGCAGTTGTGGAG 60.674 63.158 16.64 0.00 44.77 3.86
119 120 2.031012 CTGCAGTTGTGGAGCGGA 59.969 61.111 5.25 0.00 35.07 5.54
120 121 2.031012 TGCAGTTGTGGAGCGGAG 59.969 61.111 0.00 0.00 0.00 4.63
121 122 2.343758 GCAGTTGTGGAGCGGAGA 59.656 61.111 0.00 0.00 0.00 3.71
122 123 1.739562 GCAGTTGTGGAGCGGAGAG 60.740 63.158 0.00 0.00 0.00 3.20
123 124 1.079543 CAGTTGTGGAGCGGAGAGG 60.080 63.158 0.00 0.00 0.00 3.69
124 125 1.228894 AGTTGTGGAGCGGAGAGGA 60.229 57.895 0.00 0.00 0.00 3.71
125 126 0.616111 AGTTGTGGAGCGGAGAGGAT 60.616 55.000 0.00 0.00 0.00 3.24
126 127 0.179097 GTTGTGGAGCGGAGAGGATC 60.179 60.000 0.00 0.00 0.00 3.36
127 128 1.330655 TTGTGGAGCGGAGAGGATCC 61.331 60.000 2.48 2.48 45.64 3.36
135 136 2.128729 GGAGAGGATCCGAACAGGG 58.871 63.158 5.98 0.00 38.67 4.45
136 137 1.443828 GAGAGGATCCGAACAGGGC 59.556 63.158 5.98 0.00 41.52 5.19
137 138 2.034048 GAGAGGATCCGAACAGGGCC 62.034 65.000 5.98 0.00 41.52 5.80
144 145 0.543410 TCCGAACAGGGCCTAAGTCA 60.543 55.000 5.28 0.00 41.52 3.41
179 180 0.033796 AATCATGTCTGCACCCCCAG 60.034 55.000 0.00 0.00 0.00 4.45
265 266 1.607612 CCATGGCCGGGTAAACTCT 59.392 57.895 2.18 0.00 0.00 3.24
269 270 0.988832 TGGCCGGGTAAACTCTGAAT 59.011 50.000 2.18 0.00 0.00 2.57
317 318 4.002982 GCCTACACACATTTCACTCATCA 58.997 43.478 0.00 0.00 0.00 3.07
369 371 1.107114 AGAGTCAGCACCTCATACCG 58.893 55.000 0.00 0.00 0.00 4.02
370 372 0.818296 GAGTCAGCACCTCATACCGT 59.182 55.000 0.00 0.00 0.00 4.83
384 386 6.110707 CCTCATACCGTACAAACCTTAACAT 58.889 40.000 0.00 0.00 0.00 2.71
385 387 6.257193 CCTCATACCGTACAAACCTTAACATC 59.743 42.308 0.00 0.00 0.00 3.06
417 419 1.986632 ATCTGGTGATCGCATGGGCA 61.987 55.000 8.82 0.00 41.24 5.36
445 463 3.165670 GATAGCTGCGCTGCACTGC 62.166 63.158 35.70 20.22 40.10 4.40
532 551 0.608308 GACCTTCCCAACCTTTCCGG 60.608 60.000 0.00 0.00 39.35 5.14
595 615 1.141657 ACAGGCGCAGTGGATTATGAT 59.858 47.619 10.83 0.00 0.00 2.45
597 617 1.696336 AGGCGCAGTGGATTATGATCT 59.304 47.619 10.83 0.00 32.66 2.75
600 620 3.316308 GGCGCAGTGGATTATGATCTTTT 59.684 43.478 10.83 0.00 32.66 2.27
681 701 6.293735 CGGCTTTGACTTACATAGGTGAAAAA 60.294 38.462 0.00 0.00 0.00 1.94
823 844 0.037590 TCCCCGTCCTCCACATTTTG 59.962 55.000 0.00 0.00 0.00 2.44
920 980 0.708802 TCGAGTAGGGGGAGGACTTT 59.291 55.000 0.00 0.00 0.00 2.66
961 1028 3.693807 ACTTTTCCGAATAACCCCTTCC 58.306 45.455 0.00 0.00 0.00 3.46
1057 1124 1.745264 GCCTCTCCCTTCTCATCCG 59.255 63.158 0.00 0.00 0.00 4.18
1430 1503 0.882042 CTCGCTTGTTCACCACTGCT 60.882 55.000 0.00 0.00 0.00 4.24
1591 1664 1.552337 TCAAAACTGGCCAACTTTGCA 59.448 42.857 24.76 15.51 0.00 4.08
1595 1670 1.708341 ACTGGCCAACTTTGCATCTT 58.292 45.000 7.01 0.00 0.00 2.40
1596 1671 2.041701 ACTGGCCAACTTTGCATCTTT 58.958 42.857 7.01 0.00 0.00 2.52
1600 1675 3.831333 TGGCCAACTTTGCATCTTTGATA 59.169 39.130 0.61 0.00 0.00 2.15
1613 1688 5.558818 CATCTTTGATAGGGCTTGAGCTAT 58.441 41.667 2.66 0.00 41.70 2.97
1631 1706 3.242608 GCTATTTTGATGTAAGCGCGGAA 60.243 43.478 8.83 0.00 0.00 4.30
1635 1710 2.017138 TGATGTAAGCGCGGAATTGA 57.983 45.000 8.83 0.00 0.00 2.57
1636 1711 1.933181 TGATGTAAGCGCGGAATTGAG 59.067 47.619 8.83 0.00 0.00 3.02
1637 1712 1.933853 GATGTAAGCGCGGAATTGAGT 59.066 47.619 8.83 0.00 0.00 3.41
1638 1713 2.658373 TGTAAGCGCGGAATTGAGTA 57.342 45.000 8.83 0.00 0.00 2.59
1639 1714 3.173668 TGTAAGCGCGGAATTGAGTAT 57.826 42.857 8.83 0.00 0.00 2.12
1640 1715 2.863740 TGTAAGCGCGGAATTGAGTATG 59.136 45.455 8.83 0.00 0.00 2.39
1641 1716 2.024176 AAGCGCGGAATTGAGTATGT 57.976 45.000 8.83 0.00 0.00 2.29
1714 1789 4.213482 AGCGTTCTCATAAAGTTTGACACC 59.787 41.667 0.00 0.00 0.00 4.16
1908 1983 3.719924 TCGTGTACGTTTTGTGGAAGAT 58.280 40.909 0.00 0.00 40.80 2.40
1983 2058 4.050313 CAGCCTACCTGCCCAGTA 57.950 61.111 0.00 0.00 34.21 2.74
2003 2078 7.175797 CCAGTATGTCTAGGTATGTGGAGATA 58.824 42.308 0.00 0.00 0.00 1.98
2268 2344 6.645790 ATCCTGATTTTGAAGCATGTATCC 57.354 37.500 0.00 0.00 0.00 2.59
2365 2443 1.747355 CCCCATTTGATCTGTGCTGAC 59.253 52.381 0.00 0.00 0.00 3.51
2507 2585 3.135348 TCTCTTGCCTATGCTATGCTGTT 59.865 43.478 0.00 0.00 38.71 3.16
2641 2720 3.010420 GTGTTACTCCCTTGAGATTGCC 58.990 50.000 0.00 0.00 41.42 4.52
3952 4281 9.442047 GTCAAAGAGGAGAATGAGAAAGAAATA 57.558 33.333 0.00 0.00 0.00 1.40
4429 4768 6.660887 TTCACTTTTTGTGGCATTTTCTTC 57.339 33.333 0.00 0.00 46.20 2.87
4656 4995 4.566759 GTGTCATGTTACGATACTGCATGT 59.433 41.667 0.00 0.00 38.35 3.21
4730 5070 7.447545 ACAATACAATCAATGCATCTATCAGCT 59.552 33.333 0.00 0.00 0.00 4.24
5109 5450 2.291540 CCCAATTCTCCACCCTTTGCTA 60.292 50.000 0.00 0.00 0.00 3.49
5156 5529 5.645056 TGTCCATTGGGCTCTTATGAATA 57.355 39.130 9.08 0.00 0.00 1.75
5159 5532 6.126507 TGTCCATTGGGCTCTTATGAATAGAA 60.127 38.462 9.08 0.00 0.00 2.10
5215 5588 2.736670 AAAAGTCACTGAGGCCTTGT 57.263 45.000 6.77 6.62 0.00 3.16
5216 5589 2.736670 AAAGTCACTGAGGCCTTGTT 57.263 45.000 6.77 0.00 0.00 2.83
5217 5590 2.736670 AAGTCACTGAGGCCTTGTTT 57.263 45.000 6.77 0.00 0.00 2.83
5218 5591 1.972872 AGTCACTGAGGCCTTGTTTG 58.027 50.000 6.77 2.11 0.00 2.93
5219 5592 0.954452 GTCACTGAGGCCTTGTTTGG 59.046 55.000 6.77 0.00 0.00 3.28
5220 5593 0.550914 TCACTGAGGCCTTGTTTGGT 59.449 50.000 6.77 0.00 0.00 3.67
5221 5594 1.771854 TCACTGAGGCCTTGTTTGGTA 59.228 47.619 6.77 0.00 0.00 3.25
5222 5595 1.880027 CACTGAGGCCTTGTTTGGTAC 59.120 52.381 6.77 0.00 0.00 3.34
5223 5596 1.774856 ACTGAGGCCTTGTTTGGTACT 59.225 47.619 6.77 0.00 0.00 2.73
5224 5597 2.976882 ACTGAGGCCTTGTTTGGTACTA 59.023 45.455 6.77 0.00 0.00 1.82
5225 5598 3.008049 ACTGAGGCCTTGTTTGGTACTAG 59.992 47.826 6.77 0.00 0.00 2.57
5226 5599 2.976882 TGAGGCCTTGTTTGGTACTAGT 59.023 45.455 6.77 0.00 0.00 2.57
5227 5600 3.244422 TGAGGCCTTGTTTGGTACTAGTG 60.244 47.826 6.77 0.00 0.00 2.74
5228 5601 2.709397 AGGCCTTGTTTGGTACTAGTGT 59.291 45.455 0.00 0.00 0.00 3.55
5229 5602 3.905591 AGGCCTTGTTTGGTACTAGTGTA 59.094 43.478 0.00 0.00 0.00 2.90
5230 5603 4.534897 AGGCCTTGTTTGGTACTAGTGTAT 59.465 41.667 0.00 0.00 0.00 2.29
5231 5604 5.013808 AGGCCTTGTTTGGTACTAGTGTATT 59.986 40.000 0.00 0.00 0.00 1.89
5232 5605 5.708697 GGCCTTGTTTGGTACTAGTGTATTT 59.291 40.000 5.39 0.00 0.00 1.40
5233 5606 6.208007 GGCCTTGTTTGGTACTAGTGTATTTT 59.792 38.462 5.39 0.00 0.00 1.82
5234 5607 7.391275 GGCCTTGTTTGGTACTAGTGTATTTTA 59.609 37.037 5.39 0.00 0.00 1.52
5235 5608 8.448615 GCCTTGTTTGGTACTAGTGTATTTTAG 58.551 37.037 5.39 0.00 0.00 1.85
5236 5609 8.943002 CCTTGTTTGGTACTAGTGTATTTTAGG 58.057 37.037 5.39 0.16 0.00 2.69
5237 5610 8.851541 TTGTTTGGTACTAGTGTATTTTAGGG 57.148 34.615 5.39 0.00 0.00 3.53
5238 5611 8.204903 TGTTTGGTACTAGTGTATTTTAGGGA 57.795 34.615 5.39 0.00 0.00 4.20
5239 5612 8.658619 TGTTTGGTACTAGTGTATTTTAGGGAA 58.341 33.333 5.39 0.00 0.00 3.97
5240 5613 9.676861 GTTTGGTACTAGTGTATTTTAGGGAAT 57.323 33.333 5.39 0.00 0.00 3.01
5242 5615 9.675464 TTGGTACTAGTGTATTTTAGGGAATTG 57.325 33.333 5.39 0.00 0.00 2.32
5243 5616 8.269317 TGGTACTAGTGTATTTTAGGGAATTGG 58.731 37.037 5.39 0.00 0.00 3.16
5244 5617 8.270030 GGTACTAGTGTATTTTAGGGAATTGGT 58.730 37.037 5.39 0.00 0.00 3.67
5245 5618 9.106070 GTACTAGTGTATTTTAGGGAATTGGTG 57.894 37.037 5.39 0.00 0.00 4.17
5246 5619 7.116736 ACTAGTGTATTTTAGGGAATTGGTGG 58.883 38.462 0.00 0.00 0.00 4.61
5247 5620 5.269189 AGTGTATTTTAGGGAATTGGTGGG 58.731 41.667 0.00 0.00 0.00 4.61
5248 5621 4.404394 GTGTATTTTAGGGAATTGGTGGGG 59.596 45.833 0.00 0.00 0.00 4.96
5249 5622 4.295238 TGTATTTTAGGGAATTGGTGGGGA 59.705 41.667 0.00 0.00 0.00 4.81
5250 5623 4.642489 ATTTTAGGGAATTGGTGGGGAT 57.358 40.909 0.00 0.00 0.00 3.85
5251 5624 4.427956 TTTTAGGGAATTGGTGGGGATT 57.572 40.909 0.00 0.00 0.00 3.01
5252 5625 5.554034 TTTTAGGGAATTGGTGGGGATTA 57.446 39.130 0.00 0.00 0.00 1.75
5253 5626 5.759773 TTTAGGGAATTGGTGGGGATTAT 57.240 39.130 0.00 0.00 0.00 1.28
5254 5627 3.903530 AGGGAATTGGTGGGGATTATC 57.096 47.619 0.00 0.00 0.00 1.75
5255 5628 2.450886 AGGGAATTGGTGGGGATTATCC 59.549 50.000 1.91 1.91 35.23 2.59
5266 5639 1.977056 GGATTATCCCGGTCAAACCC 58.023 55.000 0.00 0.00 33.75 4.11
5267 5640 1.478105 GGATTATCCCGGTCAAACCCC 60.478 57.143 0.00 0.00 33.75 4.95
5268 5641 1.493446 GATTATCCCGGTCAAACCCCT 59.507 52.381 0.00 0.00 33.75 4.79
5269 5642 2.267160 TTATCCCGGTCAAACCCCTA 57.733 50.000 0.00 0.00 33.75 3.53
5270 5643 2.267160 TATCCCGGTCAAACCCCTAA 57.733 50.000 0.00 0.00 33.75 2.69
5271 5644 1.374572 ATCCCGGTCAAACCCCTAAA 58.625 50.000 0.00 0.00 33.75 1.85
5272 5645 1.374572 TCCCGGTCAAACCCCTAAAT 58.625 50.000 0.00 0.00 33.75 1.40
5273 5646 1.282738 TCCCGGTCAAACCCCTAAATC 59.717 52.381 0.00 0.00 33.75 2.17
5274 5647 1.683938 CCCGGTCAAACCCCTAAATCC 60.684 57.143 0.00 0.00 33.75 3.01
5275 5648 1.683938 CCGGTCAAACCCCTAAATCCC 60.684 57.143 0.00 0.00 33.75 3.85
5276 5649 1.683938 CGGTCAAACCCCTAAATCCCC 60.684 57.143 0.00 0.00 33.75 4.81
5277 5650 1.359818 GGTCAAACCCCTAAATCCCCA 59.640 52.381 0.00 0.00 30.04 4.96
5278 5651 2.453521 GTCAAACCCCTAAATCCCCAC 58.546 52.381 0.00 0.00 0.00 4.61
5279 5652 2.074579 TCAAACCCCTAAATCCCCACA 58.925 47.619 0.00 0.00 0.00 4.17
5280 5653 2.657459 TCAAACCCCTAAATCCCCACAT 59.343 45.455 0.00 0.00 0.00 3.21
5281 5654 3.859248 TCAAACCCCTAAATCCCCACATA 59.141 43.478 0.00 0.00 0.00 2.29
5282 5655 4.484270 TCAAACCCCTAAATCCCCACATAT 59.516 41.667 0.00 0.00 0.00 1.78
5283 5656 4.741928 AACCCCTAAATCCCCACATATC 57.258 45.455 0.00 0.00 0.00 1.63
5284 5657 2.993863 ACCCCTAAATCCCCACATATCC 59.006 50.000 0.00 0.00 0.00 2.59
5285 5658 2.311841 CCCCTAAATCCCCACATATCCC 59.688 54.545 0.00 0.00 0.00 3.85
5286 5659 2.993146 CCCTAAATCCCCACATATCCCA 59.007 50.000 0.00 0.00 0.00 4.37
5287 5660 3.010584 CCCTAAATCCCCACATATCCCAG 59.989 52.174 0.00 0.00 0.00 4.45
5288 5661 3.916349 CCTAAATCCCCACATATCCCAGA 59.084 47.826 0.00 0.00 0.00 3.86
5289 5662 4.353788 CCTAAATCCCCACATATCCCAGAA 59.646 45.833 0.00 0.00 0.00 3.02
5290 5663 3.884037 AATCCCCACATATCCCAGAAC 57.116 47.619 0.00 0.00 0.00 3.01
5291 5664 2.278657 TCCCCACATATCCCAGAACA 57.721 50.000 0.00 0.00 0.00 3.18
5292 5665 1.843851 TCCCCACATATCCCAGAACAC 59.156 52.381 0.00 0.00 0.00 3.32
5293 5666 1.133792 CCCCACATATCCCAGAACACC 60.134 57.143 0.00 0.00 0.00 4.16
5294 5667 1.563879 CCCACATATCCCAGAACACCA 59.436 52.381 0.00 0.00 0.00 4.17
5295 5668 2.175499 CCCACATATCCCAGAACACCAT 59.825 50.000 0.00 0.00 0.00 3.55
5296 5669 3.373001 CCCACATATCCCAGAACACCATT 60.373 47.826 0.00 0.00 0.00 3.16
5297 5670 4.280819 CCACATATCCCAGAACACCATTT 58.719 43.478 0.00 0.00 0.00 2.32
5298 5671 4.098349 CCACATATCCCAGAACACCATTTG 59.902 45.833 0.00 0.00 0.00 2.32
5299 5672 4.098349 CACATATCCCAGAACACCATTTGG 59.902 45.833 0.00 0.00 42.17 3.28
5316 5689 7.447374 CCATTTGGTTCTAGTGTATTTGACA 57.553 36.000 0.00 0.00 34.94 3.58
5317 5690 8.055279 CCATTTGGTTCTAGTGTATTTGACAT 57.945 34.615 0.00 0.00 41.14 3.06
5318 5691 7.970061 CCATTTGGTTCTAGTGTATTTGACATG 59.030 37.037 0.00 0.00 41.14 3.21
5319 5692 8.514594 CATTTGGTTCTAGTGTATTTGACATGT 58.485 33.333 0.00 0.00 41.14 3.21
5320 5693 8.458573 TTTGGTTCTAGTGTATTTGACATGTT 57.541 30.769 0.00 0.00 41.14 2.71
5321 5694 8.458573 TTGGTTCTAGTGTATTTGACATGTTT 57.541 30.769 0.00 0.00 41.14 2.83
5322 5695 8.094798 TGGTTCTAGTGTATTTGACATGTTTC 57.905 34.615 0.00 0.00 41.14 2.78
5323 5696 7.717436 TGGTTCTAGTGTATTTGACATGTTTCA 59.283 33.333 0.00 0.00 41.14 2.69
5324 5697 8.730680 GGTTCTAGTGTATTTGACATGTTTCAT 58.269 33.333 0.00 0.00 41.14 2.57
5325 5698 9.760660 GTTCTAGTGTATTTGACATGTTTCATC 57.239 33.333 0.00 0.00 41.14 2.92
5326 5699 8.492673 TCTAGTGTATTTGACATGTTTCATCC 57.507 34.615 0.00 0.00 41.14 3.51
5327 5700 6.515272 AGTGTATTTGACATGTTTCATCCC 57.485 37.500 0.00 0.00 41.14 3.85
5328 5701 5.418840 AGTGTATTTGACATGTTTCATCCCC 59.581 40.000 0.00 0.00 41.14 4.81
5329 5702 5.184864 GTGTATTTGACATGTTTCATCCCCA 59.815 40.000 0.00 0.00 41.14 4.96
5330 5703 4.806640 ATTTGACATGTTTCATCCCCAC 57.193 40.909 0.00 0.00 0.00 4.61
5331 5704 2.967745 TGACATGTTTCATCCCCACA 57.032 45.000 0.00 0.00 0.00 4.17
5332 5705 3.454719 TGACATGTTTCATCCCCACAT 57.545 42.857 0.00 0.00 0.00 3.21
5333 5706 3.777087 TGACATGTTTCATCCCCACATT 58.223 40.909 0.00 0.00 0.00 2.71
5334 5707 4.158786 TGACATGTTTCATCCCCACATTT 58.841 39.130 0.00 0.00 0.00 2.32
5335 5708 4.220382 TGACATGTTTCATCCCCACATTTC 59.780 41.667 0.00 0.00 31.15 2.17
5336 5709 3.515104 ACATGTTTCATCCCCACATTTCC 59.485 43.478 0.00 0.00 0.00 3.13
5337 5710 2.534990 TGTTTCATCCCCACATTTCCC 58.465 47.619 0.00 0.00 0.00 3.97
5338 5711 1.831106 GTTTCATCCCCACATTTCCCC 59.169 52.381 0.00 0.00 0.00 4.81
5339 5712 1.088269 TTCATCCCCACATTTCCCCA 58.912 50.000 0.00 0.00 0.00 4.96
5340 5713 0.334676 TCATCCCCACATTTCCCCAC 59.665 55.000 0.00 0.00 0.00 4.61
5341 5714 0.040942 CATCCCCACATTTCCCCACA 59.959 55.000 0.00 0.00 0.00 4.17
5342 5715 0.789687 ATCCCCACATTTCCCCACAA 59.210 50.000 0.00 0.00 0.00 3.33
5343 5716 0.563173 TCCCCACATTTCCCCACAAA 59.437 50.000 0.00 0.00 0.00 2.83
5344 5717 1.150986 TCCCCACATTTCCCCACAAAT 59.849 47.619 0.00 0.00 0.00 2.32
5345 5718 1.554617 CCCCACATTTCCCCACAAATC 59.445 52.381 0.00 0.00 0.00 2.17
5346 5719 1.554617 CCCACATTTCCCCACAAATCC 59.445 52.381 0.00 0.00 0.00 3.01
5347 5720 1.554617 CCACATTTCCCCACAAATCCC 59.445 52.381 0.00 0.00 0.00 3.85
5348 5721 1.554617 CACATTTCCCCACAAATCCCC 59.445 52.381 0.00 0.00 0.00 4.81
5349 5722 1.150986 ACATTTCCCCACAAATCCCCA 59.849 47.619 0.00 0.00 0.00 4.96
5350 5723 2.264455 CATTTCCCCACAAATCCCCAA 58.736 47.619 0.00 0.00 0.00 4.12
5351 5724 2.496679 TTTCCCCACAAATCCCCAAA 57.503 45.000 0.00 0.00 0.00 3.28
5352 5725 1.723288 TTCCCCACAAATCCCCAAAC 58.277 50.000 0.00 0.00 0.00 2.93
5353 5726 0.863956 TCCCCACAAATCCCCAAACT 59.136 50.000 0.00 0.00 0.00 2.66
5354 5727 1.203125 TCCCCACAAATCCCCAAACTC 60.203 52.381 0.00 0.00 0.00 3.01
5355 5728 1.203174 CCCCACAAATCCCCAAACTCT 60.203 52.381 0.00 0.00 0.00 3.24
5356 5729 2.042433 CCCCACAAATCCCCAAACTCTA 59.958 50.000 0.00 0.00 0.00 2.43
5357 5730 3.356290 CCCACAAATCCCCAAACTCTAG 58.644 50.000 0.00 0.00 0.00 2.43
5358 5731 3.245264 CCCACAAATCCCCAAACTCTAGT 60.245 47.826 0.00 0.00 0.00 2.57
5359 5732 3.758554 CCACAAATCCCCAAACTCTAGTG 59.241 47.826 0.00 0.00 0.00 2.74
5360 5733 3.191371 CACAAATCCCCAAACTCTAGTGC 59.809 47.826 0.00 0.00 0.00 4.40
5361 5734 3.181434 ACAAATCCCCAAACTCTAGTGCA 60.181 43.478 0.00 0.00 0.00 4.57
5362 5735 4.019174 CAAATCCCCAAACTCTAGTGCAT 58.981 43.478 0.00 0.00 0.00 3.96
5363 5736 4.322057 AATCCCCAAACTCTAGTGCATT 57.678 40.909 0.00 0.00 0.00 3.56
5364 5737 3.806949 TCCCCAAACTCTAGTGCATTT 57.193 42.857 0.00 0.00 0.00 2.32
5365 5738 4.112634 TCCCCAAACTCTAGTGCATTTT 57.887 40.909 0.00 0.00 0.00 1.82
5366 5739 4.479158 TCCCCAAACTCTAGTGCATTTTT 58.521 39.130 0.00 0.00 0.00 1.94
5367 5740 4.522789 TCCCCAAACTCTAGTGCATTTTTC 59.477 41.667 0.00 0.00 0.00 2.29
5368 5741 4.524328 CCCCAAACTCTAGTGCATTTTTCT 59.476 41.667 0.00 0.00 0.00 2.52
5369 5742 5.335976 CCCCAAACTCTAGTGCATTTTTCTC 60.336 44.000 0.00 0.00 0.00 2.87
5370 5743 5.241506 CCCAAACTCTAGTGCATTTTTCTCA 59.758 40.000 0.00 0.00 0.00 3.27
5371 5744 6.239008 CCCAAACTCTAGTGCATTTTTCTCAA 60.239 38.462 0.00 0.00 0.00 3.02
5372 5745 7.373493 CCAAACTCTAGTGCATTTTTCTCAAT 58.627 34.615 0.00 0.00 0.00 2.57
5373 5746 8.514594 CCAAACTCTAGTGCATTTTTCTCAATA 58.485 33.333 0.00 0.00 0.00 1.90
5374 5747 9.334693 CAAACTCTAGTGCATTTTTCTCAATAC 57.665 33.333 0.00 0.00 0.00 1.89
5375 5748 7.617041 ACTCTAGTGCATTTTTCTCAATACC 57.383 36.000 0.00 0.00 0.00 2.73
5376 5749 6.599638 ACTCTAGTGCATTTTTCTCAATACCC 59.400 38.462 0.00 0.00 0.00 3.69
5377 5750 6.480763 TCTAGTGCATTTTTCTCAATACCCA 58.519 36.000 0.00 0.00 0.00 4.51
5378 5751 6.945435 TCTAGTGCATTTTTCTCAATACCCAA 59.055 34.615 0.00 0.00 0.00 4.12
5379 5752 6.610075 AGTGCATTTTTCTCAATACCCAAT 57.390 33.333 0.00 0.00 0.00 3.16
5380 5753 7.716799 AGTGCATTTTTCTCAATACCCAATA 57.283 32.000 0.00 0.00 0.00 1.90
5381 5754 7.547227 AGTGCATTTTTCTCAATACCCAATAC 58.453 34.615 0.00 0.00 0.00 1.89
5382 5755 7.178274 AGTGCATTTTTCTCAATACCCAATACA 59.822 33.333 0.00 0.00 0.00 2.29
5383 5756 7.275560 GTGCATTTTTCTCAATACCCAATACAC 59.724 37.037 0.00 0.00 0.00 2.90
5384 5757 7.178274 TGCATTTTTCTCAATACCCAATACACT 59.822 33.333 0.00 0.00 0.00 3.55
5385 5758 8.682710 GCATTTTTCTCAATACCCAATACACTA 58.317 33.333 0.00 0.00 0.00 2.74
5387 5760 9.975218 ATTTTTCTCAATACCCAATACACTACT 57.025 29.630 0.00 0.00 0.00 2.57
5388 5761 9.444600 TTTTTCTCAATACCCAATACACTACTC 57.555 33.333 0.00 0.00 0.00 2.59
5389 5762 6.726490 TCTCAATACCCAATACACTACTCC 57.274 41.667 0.00 0.00 0.00 3.85
5390 5763 6.441222 TCTCAATACCCAATACACTACTCCT 58.559 40.000 0.00 0.00 0.00 3.69
5391 5764 7.589081 TCTCAATACCCAATACACTACTCCTA 58.411 38.462 0.00 0.00 0.00 2.94
5392 5765 7.504911 TCTCAATACCCAATACACTACTCCTAC 59.495 40.741 0.00 0.00 0.00 3.18
5393 5766 6.552350 TCAATACCCAATACACTACTCCTACC 59.448 42.308 0.00 0.00 0.00 3.18
5394 5767 4.621797 ACCCAATACACTACTCCTACCT 57.378 45.455 0.00 0.00 0.00 3.08
5395 5768 5.739143 ACCCAATACACTACTCCTACCTA 57.261 43.478 0.00 0.00 0.00 3.08
5396 5769 5.703310 ACCCAATACACTACTCCTACCTAG 58.297 45.833 0.00 0.00 0.00 3.02
5397 5770 5.195349 ACCCAATACACTACTCCTACCTAGT 59.805 44.000 0.00 0.00 0.00 2.57
5398 5771 5.535406 CCCAATACACTACTCCTACCTAGTG 59.465 48.000 3.76 3.76 43.75 2.74
5404 5777 6.636562 CACTACTCCTACCTAGTGTATTGG 57.363 45.833 0.00 0.00 36.58 3.16
5405 5778 5.535406 CACTACTCCTACCTAGTGTATTGGG 59.465 48.000 0.00 0.00 36.58 4.12
5406 5779 3.924922 ACTCCTACCTAGTGTATTGGGG 58.075 50.000 0.00 0.00 0.00 4.96
5407 5780 3.534747 ACTCCTACCTAGTGTATTGGGGA 59.465 47.826 0.00 0.00 0.00 4.81
5408 5781 4.172241 ACTCCTACCTAGTGTATTGGGGAT 59.828 45.833 0.00 0.00 0.00 3.85
5409 5782 5.377769 ACTCCTACCTAGTGTATTGGGGATA 59.622 44.000 0.00 0.00 0.00 2.59
5410 5783 6.125681 ACTCCTACCTAGTGTATTGGGGATAA 60.126 42.308 0.00 0.00 0.00 1.75
5411 5784 6.695624 TCCTACCTAGTGTATTGGGGATAAA 58.304 40.000 0.00 0.00 0.00 1.40
5412 5785 7.318401 TCCTACCTAGTGTATTGGGGATAAAT 58.682 38.462 0.00 0.00 0.00 1.40
5413 5786 7.236847 TCCTACCTAGTGTATTGGGGATAAATG 59.763 40.741 0.00 0.00 0.00 2.32
5414 5787 6.200878 ACCTAGTGTATTGGGGATAAATGG 57.799 41.667 0.00 0.00 0.00 3.16
5415 5788 5.074515 ACCTAGTGTATTGGGGATAAATGGG 59.925 44.000 0.00 0.00 0.00 4.00
5416 5789 4.469469 AGTGTATTGGGGATAAATGGGG 57.531 45.455 0.00 0.00 0.00 4.96
5417 5790 4.058731 AGTGTATTGGGGATAAATGGGGA 58.941 43.478 0.00 0.00 0.00 4.81
5418 5791 4.674581 AGTGTATTGGGGATAAATGGGGAT 59.325 41.667 0.00 0.00 0.00 3.85
5419 5792 5.137776 AGTGTATTGGGGATAAATGGGGATT 59.862 40.000 0.00 0.00 0.00 3.01
5420 5793 5.843969 GTGTATTGGGGATAAATGGGGATTT 59.156 40.000 0.00 0.00 0.00 2.17
5421 5794 5.843421 TGTATTGGGGATAAATGGGGATTTG 59.157 40.000 0.00 0.00 0.00 2.32
5422 5795 4.633830 TTGGGGATAAATGGGGATTTGA 57.366 40.909 0.00 0.00 0.00 2.69
5423 5796 4.633830 TGGGGATAAATGGGGATTTGAA 57.366 40.909 0.00 0.00 0.00 2.69
5424 5797 4.555689 TGGGGATAAATGGGGATTTGAAG 58.444 43.478 0.00 0.00 0.00 3.02
5425 5798 3.903714 GGGGATAAATGGGGATTTGAAGG 59.096 47.826 0.00 0.00 0.00 3.46
5426 5799 3.903714 GGGATAAATGGGGATTTGAAGGG 59.096 47.826 0.00 0.00 0.00 3.95
5427 5800 4.388575 GGGATAAATGGGGATTTGAAGGGA 60.389 45.833 0.00 0.00 0.00 4.20
5428 5801 5.406163 GGATAAATGGGGATTTGAAGGGAT 58.594 41.667 0.00 0.00 0.00 3.85
5429 5802 5.846164 GGATAAATGGGGATTTGAAGGGATT 59.154 40.000 0.00 0.00 0.00 3.01
5430 5803 6.239686 GGATAAATGGGGATTTGAAGGGATTG 60.240 42.308 0.00 0.00 0.00 2.67
5431 5804 2.548464 TGGGGATTTGAAGGGATTGG 57.452 50.000 0.00 0.00 0.00 3.16
5432 5805 1.008206 TGGGGATTTGAAGGGATTGGG 59.992 52.381 0.00 0.00 0.00 4.12
5433 5806 1.008327 GGGGATTTGAAGGGATTGGGT 59.992 52.381 0.00 0.00 0.00 4.51
5434 5807 2.110578 GGGATTTGAAGGGATTGGGTG 58.889 52.381 0.00 0.00 0.00 4.61
5435 5808 2.292192 GGGATTTGAAGGGATTGGGTGA 60.292 50.000 0.00 0.00 0.00 4.02
5436 5809 3.440127 GGATTTGAAGGGATTGGGTGAA 58.560 45.455 0.00 0.00 0.00 3.18
5437 5810 3.448660 GGATTTGAAGGGATTGGGTGAAG 59.551 47.826 0.00 0.00 0.00 3.02
5438 5811 2.603075 TTGAAGGGATTGGGTGAAGG 57.397 50.000 0.00 0.00 0.00 3.46
5439 5812 1.455822 TGAAGGGATTGGGTGAAGGT 58.544 50.000 0.00 0.00 0.00 3.50
5440 5813 1.786441 TGAAGGGATTGGGTGAAGGTT 59.214 47.619 0.00 0.00 0.00 3.50
5441 5814 2.171003 GAAGGGATTGGGTGAAGGTTG 58.829 52.381 0.00 0.00 0.00 3.77
5442 5815 0.409484 AGGGATTGGGTGAAGGTTGG 59.591 55.000 0.00 0.00 0.00 3.77
5443 5816 0.614697 GGGATTGGGTGAAGGTTGGG 60.615 60.000 0.00 0.00 0.00 4.12
5444 5817 0.614697 GGATTGGGTGAAGGTTGGGG 60.615 60.000 0.00 0.00 0.00 4.96
5445 5818 0.114364 GATTGGGTGAAGGTTGGGGT 59.886 55.000 0.00 0.00 0.00 4.95
5446 5819 0.565674 ATTGGGTGAAGGTTGGGGTT 59.434 50.000 0.00 0.00 0.00 4.11
5447 5820 0.340208 TTGGGTGAAGGTTGGGGTTT 59.660 50.000 0.00 0.00 0.00 3.27
5448 5821 0.105913 TGGGTGAAGGTTGGGGTTTC 60.106 55.000 0.00 0.00 0.00 2.78
5449 5822 0.105913 GGGTGAAGGTTGGGGTTTCA 60.106 55.000 0.00 0.00 0.00 2.69
5450 5823 1.037493 GGTGAAGGTTGGGGTTTCAC 58.963 55.000 7.80 7.80 46.13 3.18
5451 5824 1.037493 GTGAAGGTTGGGGTTTCACC 58.963 55.000 5.51 0.00 42.91 4.02
5463 5836 2.666317 GGTTTCACCCAATCCCTATGG 58.334 52.381 0.00 0.00 37.71 2.74
5485 5858 4.265856 GGATTATCCCCTCAAAAACCCT 57.734 45.455 0.00 0.00 0.00 4.34
5486 5859 5.397553 GGATTATCCCCTCAAAAACCCTA 57.602 43.478 0.00 0.00 0.00 3.53
5487 5860 5.386060 GGATTATCCCCTCAAAAACCCTAG 58.614 45.833 0.00 0.00 0.00 3.02
5488 5861 5.103643 GGATTATCCCCTCAAAAACCCTAGT 60.104 44.000 0.00 0.00 0.00 2.57
5489 5862 6.102174 GGATTATCCCCTCAAAAACCCTAGTA 59.898 42.308 0.00 0.00 0.00 1.82
5490 5863 4.857130 ATCCCCTCAAAAACCCTAGTAC 57.143 45.455 0.00 0.00 0.00 2.73
5491 5864 2.914941 TCCCCTCAAAAACCCTAGTACC 59.085 50.000 0.00 0.00 0.00 3.34
5492 5865 2.645797 CCCCTCAAAAACCCTAGTACCA 59.354 50.000 0.00 0.00 0.00 3.25
5493 5866 3.074836 CCCCTCAAAAACCCTAGTACCAA 59.925 47.826 0.00 0.00 0.00 3.67
5494 5867 4.448054 CCCCTCAAAAACCCTAGTACCAAA 60.448 45.833 0.00 0.00 0.00 3.28
5495 5868 4.521639 CCCTCAAAAACCCTAGTACCAAAC 59.478 45.833 0.00 0.00 0.00 2.93
5496 5869 5.134661 CCTCAAAAACCCTAGTACCAAACA 58.865 41.667 0.00 0.00 0.00 2.83
5497 5870 5.595133 CCTCAAAAACCCTAGTACCAAACAA 59.405 40.000 0.00 0.00 0.00 2.83
5498 5871 6.238925 CCTCAAAAACCCTAGTACCAAACAAG 60.239 42.308 0.00 0.00 0.00 3.16
5499 5872 5.595133 TCAAAAACCCTAGTACCAAACAAGG 59.405 40.000 0.00 0.00 0.00 3.61
5500 5873 2.873094 ACCCTAGTACCAAACAAGGC 57.127 50.000 0.00 0.00 0.00 4.35
5601 5974 6.668323 AGATATTTGTGTGGAAAAAGTCACG 58.332 36.000 0.00 0.00 36.74 4.35
5613 5986 2.533266 AAGTCACGCTGAGATTGTGT 57.467 45.000 0.00 0.00 35.20 3.72
5614 5987 1.788258 AGTCACGCTGAGATTGTGTG 58.212 50.000 0.00 0.00 44.46 3.82
5626 5999 4.202212 TGAGATTGTGTGGAAGACGAAAGA 60.202 41.667 0.00 0.00 29.10 2.52
5630 6003 3.921677 TGTGTGGAAGACGAAAGATACC 58.078 45.455 0.00 0.00 29.10 2.73
5656 6029 4.835615 AGGATCATCCGAAGCTACATAGTT 59.164 41.667 0.00 0.00 42.75 2.24
5666 6039 8.201464 TCCGAAGCTACATAGTTGATATTTTCA 58.799 33.333 0.00 0.00 0.00 2.69
5790 6165 6.633500 TTTCTAAATCAAATAGATGGCCCG 57.367 37.500 0.00 0.00 36.96 6.13
5868 6245 4.949856 AGGACAAATTTGTATCCATTCGCT 59.050 37.500 23.33 6.49 42.43 4.93
5877 6254 6.417191 TTGTATCCATTCGCTAGTGTTTTC 57.583 37.500 2.66 0.00 0.00 2.29
5878 6255 4.873827 TGTATCCATTCGCTAGTGTTTTCC 59.126 41.667 2.66 0.00 0.00 3.13
5879 6256 2.706890 TCCATTCGCTAGTGTTTTCCC 58.293 47.619 2.66 0.00 0.00 3.97
5880 6257 1.743394 CCATTCGCTAGTGTTTTCCCC 59.257 52.381 2.66 0.00 0.00 4.81
5881 6258 1.743394 CATTCGCTAGTGTTTTCCCCC 59.257 52.381 2.66 0.00 0.00 5.40
5898 6276 1.202927 CCCCCTTATGTATGCCCTGTG 60.203 57.143 0.00 0.00 0.00 3.66
5900 6278 2.091885 CCCCTTATGTATGCCCTGTGTT 60.092 50.000 0.00 0.00 0.00 3.32
5905 6283 5.009010 CCTTATGTATGCCCTGTGTTGATTC 59.991 44.000 0.00 0.00 0.00 2.52
5906 6284 3.719268 TGTATGCCCTGTGTTGATTCT 57.281 42.857 0.00 0.00 0.00 2.40
5916 6294 5.765182 CCCTGTGTTGATTCTCTAGTGTTTT 59.235 40.000 0.00 0.00 0.00 2.43
5917 6295 6.263168 CCCTGTGTTGATTCTCTAGTGTTTTT 59.737 38.462 0.00 0.00 0.00 1.94
5960 6338 5.130477 TGGAAGGTTCTCTAATGTATGACCC 59.870 44.000 0.00 0.00 0.00 4.46
5962 6340 3.069729 AGGTTCTCTAATGTATGACCCGC 59.930 47.826 0.00 0.00 0.00 6.13
5983 6361 4.437794 CGCAGATGTGATTTTGTACTGCAT 60.438 41.667 0.77 0.00 45.99 3.96
5995 6373 6.795098 TTTGTACTGCATTTCATAGAACGT 57.205 33.333 0.00 0.00 0.00 3.99
5996 6374 7.892778 TTTGTACTGCATTTCATAGAACGTA 57.107 32.000 0.00 0.00 0.00 3.57
5997 6375 6.880822 TGTACTGCATTTCATAGAACGTAC 57.119 37.500 0.00 0.00 0.00 3.67
5998 6376 6.391537 TGTACTGCATTTCATAGAACGTACA 58.608 36.000 0.00 3.81 34.22 2.90
6018 6396 6.871492 CGTACACAATTCTATATATGCACCCA 59.129 38.462 0.00 0.00 0.00 4.51
6019 6397 7.386573 CGTACACAATTCTATATATGCACCCAA 59.613 37.037 0.00 0.00 0.00 4.12
6020 6398 9.062524 GTACACAATTCTATATATGCACCCAAA 57.937 33.333 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.671742 GAGAGGTTCCGAACAGGCA 59.328 57.895 13.23 0.00 40.77 4.75
1 2 1.079057 GGAGAGGTTCCGAACAGGC 60.079 63.158 13.23 1.98 40.77 4.85
9 10 2.742589 GTTTCGTGATTGGAGAGGTTCC 59.257 50.000 0.00 0.00 46.98 3.62
10 11 3.665190 AGTTTCGTGATTGGAGAGGTTC 58.335 45.455 0.00 0.00 0.00 3.62
11 12 3.557264 GGAGTTTCGTGATTGGAGAGGTT 60.557 47.826 0.00 0.00 0.00 3.50
12 13 2.028020 GGAGTTTCGTGATTGGAGAGGT 60.028 50.000 0.00 0.00 0.00 3.85
13 14 2.622436 GGAGTTTCGTGATTGGAGAGG 58.378 52.381 0.00 0.00 0.00 3.69
14 15 2.263077 CGGAGTTTCGTGATTGGAGAG 58.737 52.381 0.00 0.00 0.00 3.20
15 16 1.671850 GCGGAGTTTCGTGATTGGAGA 60.672 52.381 0.00 0.00 0.00 3.71
16 17 0.721718 GCGGAGTTTCGTGATTGGAG 59.278 55.000 0.00 0.00 0.00 3.86
17 18 0.320374 AGCGGAGTTTCGTGATTGGA 59.680 50.000 0.00 0.00 0.00 3.53
18 19 0.721718 GAGCGGAGTTTCGTGATTGG 59.278 55.000 0.00 0.00 0.00 3.16
19 20 0.366871 CGAGCGGAGTTTCGTGATTG 59.633 55.000 0.00 0.00 33.50 2.67
20 21 0.736325 CCGAGCGGAGTTTCGTGATT 60.736 55.000 2.00 0.00 35.61 2.57
21 22 1.153823 CCGAGCGGAGTTTCGTGAT 60.154 57.895 2.00 0.00 35.61 3.06
22 23 2.257371 CCGAGCGGAGTTTCGTGA 59.743 61.111 2.00 0.00 35.61 4.35
23 24 3.479269 GCCGAGCGGAGTTTCGTG 61.479 66.667 13.94 0.00 35.61 4.35
38 39 3.941657 AAACTGAGCTCCTCGCGCC 62.942 63.158 12.15 0.00 45.59 6.53
39 40 2.433318 AAACTGAGCTCCTCGCGC 60.433 61.111 12.15 0.00 45.59 6.86
40 41 1.075425 CTCAAACTGAGCTCCTCGCG 61.075 60.000 12.15 0.00 45.59 5.87
41 42 2.748268 CTCAAACTGAGCTCCTCGC 58.252 57.895 12.15 0.00 37.72 5.03
49 50 0.689623 AGGGAGTGGCTCAAACTGAG 59.310 55.000 0.00 0.00 46.90 3.35
50 51 0.397941 CAGGGAGTGGCTCAAACTGA 59.602 55.000 8.16 0.00 33.40 3.41
51 52 1.239968 GCAGGGAGTGGCTCAAACTG 61.240 60.000 0.00 4.89 34.13 3.16
52 53 1.073897 GCAGGGAGTGGCTCAAACT 59.926 57.895 0.00 0.00 31.08 2.66
53 54 0.823356 TTGCAGGGAGTGGCTCAAAC 60.823 55.000 0.00 0.00 31.08 2.93
54 55 0.112995 ATTGCAGGGAGTGGCTCAAA 59.887 50.000 0.00 0.00 31.08 2.69
55 56 0.112995 AATTGCAGGGAGTGGCTCAA 59.887 50.000 0.00 0.00 31.08 3.02
56 57 0.609957 CAATTGCAGGGAGTGGCTCA 60.610 55.000 0.00 0.00 31.08 4.26
57 58 0.610232 ACAATTGCAGGGAGTGGCTC 60.610 55.000 5.05 0.00 0.00 4.70
58 59 0.896940 CACAATTGCAGGGAGTGGCT 60.897 55.000 5.05 0.00 0.00 4.75
59 60 1.588082 CACAATTGCAGGGAGTGGC 59.412 57.895 5.05 0.00 0.00 5.01
93 94 2.435586 CAACTGCAGCTCCCGGAG 60.436 66.667 15.27 10.41 0.00 4.63
94 95 3.241530 ACAACTGCAGCTCCCGGA 61.242 61.111 15.27 0.00 0.00 5.14
95 96 3.052082 CACAACTGCAGCTCCCGG 61.052 66.667 15.27 0.00 0.00 5.73
96 97 3.052082 CCACAACTGCAGCTCCCG 61.052 66.667 15.27 0.00 0.00 5.14
97 98 1.673665 CTCCACAACTGCAGCTCCC 60.674 63.158 15.27 0.00 0.00 4.30
98 99 2.331132 GCTCCACAACTGCAGCTCC 61.331 63.158 15.27 0.00 0.00 4.70
99 100 2.675056 CGCTCCACAACTGCAGCTC 61.675 63.158 15.27 0.00 0.00 4.09
100 101 2.667536 CGCTCCACAACTGCAGCT 60.668 61.111 15.27 0.00 0.00 4.24
101 102 3.730761 CCGCTCCACAACTGCAGC 61.731 66.667 15.27 0.00 0.00 5.25
102 103 2.031012 TCCGCTCCACAACTGCAG 59.969 61.111 13.48 13.48 0.00 4.41
103 104 2.031012 CTCCGCTCCACAACTGCA 59.969 61.111 0.00 0.00 0.00 4.41
104 105 1.739562 CTCTCCGCTCCACAACTGC 60.740 63.158 0.00 0.00 0.00 4.40
105 106 1.079543 CCTCTCCGCTCCACAACTG 60.080 63.158 0.00 0.00 0.00 3.16
106 107 0.616111 ATCCTCTCCGCTCCACAACT 60.616 55.000 0.00 0.00 0.00 3.16
107 108 0.179097 GATCCTCTCCGCTCCACAAC 60.179 60.000 0.00 0.00 0.00 3.32
108 109 1.330655 GGATCCTCTCCGCTCCACAA 61.331 60.000 3.84 0.00 33.29 3.33
109 110 1.758514 GGATCCTCTCCGCTCCACA 60.759 63.158 3.84 0.00 33.29 4.17
110 111 3.133946 GGATCCTCTCCGCTCCAC 58.866 66.667 3.84 0.00 33.29 4.02
117 118 2.034048 GCCCTGTTCGGATCCTCTCC 62.034 65.000 10.75 0.00 41.07 3.71
118 119 1.443828 GCCCTGTTCGGATCCTCTC 59.556 63.158 10.75 0.11 33.16 3.20
119 120 2.066999 GGCCCTGTTCGGATCCTCT 61.067 63.158 10.75 0.00 33.16 3.69
120 121 0.759436 TAGGCCCTGTTCGGATCCTC 60.759 60.000 10.75 0.86 37.01 3.71
121 122 0.326238 TTAGGCCCTGTTCGGATCCT 60.326 55.000 10.75 0.00 38.53 3.24
122 123 0.106894 CTTAGGCCCTGTTCGGATCC 59.893 60.000 0.00 0.00 33.16 3.36
123 124 0.831307 ACTTAGGCCCTGTTCGGATC 59.169 55.000 0.00 0.00 33.16 3.36
124 125 0.831307 GACTTAGGCCCTGTTCGGAT 59.169 55.000 0.00 0.00 33.16 4.18
125 126 0.543410 TGACTTAGGCCCTGTTCGGA 60.543 55.000 0.00 0.00 33.16 4.55
126 127 0.323629 TTGACTTAGGCCCTGTTCGG 59.676 55.000 0.00 0.00 0.00 4.30
127 128 2.403252 ATTGACTTAGGCCCTGTTCG 57.597 50.000 0.00 0.00 0.00 3.95
128 129 5.059833 CAGATATTGACTTAGGCCCTGTTC 58.940 45.833 0.00 0.00 0.00 3.18
129 130 4.475016 ACAGATATTGACTTAGGCCCTGTT 59.525 41.667 0.00 0.00 0.00 3.16
130 131 4.040755 ACAGATATTGACTTAGGCCCTGT 58.959 43.478 0.00 0.00 0.00 4.00
131 132 4.101585 TGACAGATATTGACTTAGGCCCTG 59.898 45.833 0.00 0.00 0.00 4.45
132 133 4.298626 TGACAGATATTGACTTAGGCCCT 58.701 43.478 0.00 0.00 0.00 5.19
133 134 4.689612 TGACAGATATTGACTTAGGCCC 57.310 45.455 0.00 0.00 0.00 5.80
134 135 5.525378 CAGTTGACAGATATTGACTTAGGCC 59.475 44.000 0.00 0.00 0.00 5.19
135 136 6.341316 TCAGTTGACAGATATTGACTTAGGC 58.659 40.000 0.00 0.00 0.00 3.93
136 137 8.777865 TTTCAGTTGACAGATATTGACTTAGG 57.222 34.615 0.00 0.00 0.00 2.69
144 145 8.890718 CAGACATGATTTCAGTTGACAGATATT 58.109 33.333 0.00 0.00 0.00 1.28
179 180 2.723124 ACCGATGGCATGTTGTTTTC 57.277 45.000 3.81 0.00 0.00 2.29
229 230 1.376609 GGCAATAAGGCACGGTGGAG 61.377 60.000 10.60 0.00 43.51 3.86
265 266 7.444487 CAGAATTCAGATGATGAGCCTAATTCA 59.556 37.037 8.44 0.00 39.68 2.57
269 270 6.325804 TCTCAGAATTCAGATGATGAGCCTAA 59.674 38.462 8.44 0.00 39.68 2.69
317 318 0.391661 CGATGCCTGTTAGTGTGGCT 60.392 55.000 0.00 0.00 46.23 4.75
369 371 4.689345 AGTGCTCGATGTTAAGGTTTGTAC 59.311 41.667 0.00 0.00 0.00 2.90
370 372 4.890088 AGTGCTCGATGTTAAGGTTTGTA 58.110 39.130 0.00 0.00 0.00 2.41
384 386 1.893062 CAGATGGTGGAGTGCTCGA 59.107 57.895 0.00 0.00 0.00 4.04
385 387 4.509756 CAGATGGTGGAGTGCTCG 57.490 61.111 0.00 0.00 0.00 5.03
417 419 1.609783 GCAGCTATCCAGGGTTGGT 59.390 57.895 0.00 0.00 45.26 3.67
445 463 1.858707 CGTAATGCTGTGCGCGTTG 60.859 57.895 8.43 0.00 46.85 4.10
532 551 2.335011 GGTTGCTTCGGGTTGTGC 59.665 61.111 0.00 0.00 0.00 4.57
574 594 0.659427 CATAATCCACTGCGCCTGTG 59.341 55.000 19.53 19.53 33.98 3.66
617 637 6.586082 CAGTATTTTCCAAGTACAAATGCACC 59.414 38.462 0.00 0.00 0.00 5.01
626 646 3.692690 TGGGCCAGTATTTTCCAAGTAC 58.307 45.455 0.00 0.00 0.00 2.73
778 798 4.247380 GAGCTGATGCGGGGGAGG 62.247 72.222 0.00 0.00 45.42 4.30
823 844 2.747436 ACGAAGTAGAACGGTGGAAAC 58.253 47.619 0.00 0.00 41.94 2.78
858 918 5.215903 CAGTGAGATAAAGCGATGACGTAT 58.784 41.667 0.00 0.00 41.98 3.06
863 923 2.168313 TGGCAGTGAGATAAAGCGATGA 59.832 45.455 0.00 0.00 0.00 2.92
920 980 2.752358 CTGGCTCAACTGCTCCCA 59.248 61.111 0.00 0.00 0.00 4.37
961 1028 1.433879 CTAGGGCAACGACGAGGAG 59.566 63.158 0.00 0.00 37.60 3.69
1169 1236 2.835431 ATGACGAGGAGGAGGCGG 60.835 66.667 0.00 0.00 0.00 6.13
1170 1237 1.791103 GAGATGACGAGGAGGAGGCG 61.791 65.000 0.00 0.00 0.00 5.52
1171 1238 0.753479 TGAGATGACGAGGAGGAGGC 60.753 60.000 0.00 0.00 0.00 4.70
1172 1239 1.885887 GATGAGATGACGAGGAGGAGG 59.114 57.143 0.00 0.00 0.00 4.30
1173 1240 2.862541 AGATGAGATGACGAGGAGGAG 58.137 52.381 0.00 0.00 0.00 3.69
1174 1241 3.218453 GAAGATGAGATGACGAGGAGGA 58.782 50.000 0.00 0.00 0.00 3.71
1175 1242 2.295909 GGAAGATGAGATGACGAGGAGG 59.704 54.545 0.00 0.00 0.00 4.30
1176 1243 2.031245 CGGAAGATGAGATGACGAGGAG 60.031 54.545 0.00 0.00 0.00 3.69
1177 1244 1.950216 CGGAAGATGAGATGACGAGGA 59.050 52.381 0.00 0.00 0.00 3.71
1276 1349 3.308878 CTGCCTACAAACACGCCGC 62.309 63.158 0.00 0.00 0.00 6.53
1359 1432 1.153549 GACGAAGGAGCCGCAGAAT 60.154 57.895 0.00 0.00 0.00 2.40
1430 1503 2.456000 CGAAGCTAAGCGAAGGCAA 58.544 52.632 0.00 0.00 43.41 4.52
1477 1550 1.746861 CGGATTGGACCAAGCTATGCA 60.747 52.381 21.23 0.00 29.93 3.96
1591 1664 5.839517 ATAGCTCAAGCCCTATCAAAGAT 57.160 39.130 0.00 0.00 43.38 2.40
1595 1670 5.754782 TCAAAATAGCTCAAGCCCTATCAA 58.245 37.500 0.00 0.00 43.38 2.57
1596 1671 5.372343 TCAAAATAGCTCAAGCCCTATCA 57.628 39.130 0.00 0.00 43.38 2.15
1600 1675 3.973425 ACATCAAAATAGCTCAAGCCCT 58.027 40.909 0.00 0.00 43.38 5.19
1613 1688 3.189495 TCAATTCCGCGCTTACATCAAAA 59.811 39.130 5.56 0.00 0.00 2.44
1631 1706 9.407380 TGAGCACCAATTAATAACATACTCAAT 57.593 29.630 0.00 0.00 0.00 2.57
1714 1789 1.112315 AGCTATCGGTGGAGCTCAGG 61.112 60.000 17.19 0.99 46.08 3.86
1820 1895 3.191162 GGCACACATTTAATCACAGCAGA 59.809 43.478 0.00 0.00 0.00 4.26
1983 2058 9.159254 TCAAAATATCTCCACATACCTAGACAT 57.841 33.333 0.00 0.00 0.00 3.06
2056 2131 8.891671 AACAGCACAAAATTATTTCAGACAAT 57.108 26.923 0.00 0.00 0.00 2.71
2102 2178 6.491745 TCAGAAATGTGGTTAGGCAAACATTA 59.508 34.615 0.72 0.00 41.21 1.90
2145 2221 9.617523 TGCAATCATGTCTCTTTCTCATATTAA 57.382 29.630 0.00 0.00 0.00 1.40
2246 2322 5.759059 AGGATACATGCTTCAAAATCAGGA 58.241 37.500 0.00 0.00 41.41 3.86
2268 2344 9.213799 GTTTATTAGAGGAATAGAGATGGCAAG 57.786 37.037 0.00 0.00 31.53 4.01
2641 2720 5.003804 ACGAAGCTAATAAATAGGCATGGG 58.996 41.667 0.00 0.00 31.83 4.00
2945 3024 5.178623 TCCGCTGTTAATTTCAAGTACAGTG 59.821 40.000 0.00 0.00 35.00 3.66
2965 3044 5.587033 CCGTTAGGTCTTTATAATTCCGC 57.413 43.478 0.00 0.00 0.00 5.54
3952 4281 1.446907 CTTTCGAAGTGGCTGCAGAT 58.553 50.000 20.43 0.00 0.00 2.90
4273 4603 9.404848 CTGCAATCCCATATTAATATCATGAGT 57.595 33.333 4.93 0.00 0.00 3.41
4442 4781 9.160496 CCTAATGATCTAGATATTTCAACAGCC 57.840 37.037 4.89 0.00 0.00 4.85
4499 4838 2.423892 TCTAGCCACTTCAGATCGACAC 59.576 50.000 0.00 0.00 0.00 3.67
4730 5070 5.105595 TGTGTGTTCATCAAACCAAACATCA 60.106 36.000 0.00 0.00 37.03 3.07
4800 5140 8.647796 AGGCTAACAACATGCATACTACTATAA 58.352 33.333 0.00 0.00 0.00 0.98
5109 5450 4.503991 GGACTTGAGAACCAATCACAGAGT 60.504 45.833 0.00 0.00 33.68 3.24
5199 5572 1.477558 CCAAACAAGGCCTCAGTGACT 60.478 52.381 5.23 0.00 0.00 3.41
5201 5574 0.550914 ACCAAACAAGGCCTCAGTGA 59.449 50.000 5.23 0.00 0.00 3.41
5202 5575 1.880027 GTACCAAACAAGGCCTCAGTG 59.120 52.381 5.23 2.79 0.00 3.66
5203 5576 1.774856 AGTACCAAACAAGGCCTCAGT 59.225 47.619 5.23 5.11 0.00 3.41
5204 5577 2.568623 AGTACCAAACAAGGCCTCAG 57.431 50.000 5.23 4.30 0.00 3.35
5205 5578 2.976882 ACTAGTACCAAACAAGGCCTCA 59.023 45.455 5.23 0.00 0.00 3.86
5206 5579 3.244457 ACACTAGTACCAAACAAGGCCTC 60.244 47.826 5.23 0.00 0.00 4.70
5207 5580 2.709397 ACACTAGTACCAAACAAGGCCT 59.291 45.455 0.00 0.00 0.00 5.19
5208 5581 3.136009 ACACTAGTACCAAACAAGGCC 57.864 47.619 0.00 0.00 0.00 5.19
5209 5582 6.812879 AAATACACTAGTACCAAACAAGGC 57.187 37.500 0.00 0.00 31.96 4.35
5210 5583 8.943002 CCTAAAATACACTAGTACCAAACAAGG 58.057 37.037 0.00 0.00 31.96 3.61
5211 5584 8.943002 CCCTAAAATACACTAGTACCAAACAAG 58.057 37.037 0.00 0.00 31.96 3.16
5212 5585 8.658619 TCCCTAAAATACACTAGTACCAAACAA 58.341 33.333 0.00 0.00 31.96 2.83
5213 5586 8.204903 TCCCTAAAATACACTAGTACCAAACA 57.795 34.615 0.00 0.00 31.96 2.83
5214 5587 9.676861 ATTCCCTAAAATACACTAGTACCAAAC 57.323 33.333 0.00 0.00 31.96 2.93
5216 5589 9.675464 CAATTCCCTAAAATACACTAGTACCAA 57.325 33.333 0.00 0.00 31.96 3.67
5217 5590 8.269317 CCAATTCCCTAAAATACACTAGTACCA 58.731 37.037 0.00 0.00 31.96 3.25
5218 5591 8.270030 ACCAATTCCCTAAAATACACTAGTACC 58.730 37.037 0.00 0.00 31.96 3.34
5219 5592 9.106070 CACCAATTCCCTAAAATACACTAGTAC 57.894 37.037 0.00 0.00 31.96 2.73
5220 5593 8.269317 CCACCAATTCCCTAAAATACACTAGTA 58.731 37.037 0.00 0.00 34.10 1.82
5221 5594 7.116736 CCACCAATTCCCTAAAATACACTAGT 58.883 38.462 0.00 0.00 0.00 2.57
5222 5595 6.546034 CCCACCAATTCCCTAAAATACACTAG 59.454 42.308 0.00 0.00 0.00 2.57
5223 5596 6.428295 CCCACCAATTCCCTAAAATACACTA 58.572 40.000 0.00 0.00 0.00 2.74
5224 5597 5.269189 CCCACCAATTCCCTAAAATACACT 58.731 41.667 0.00 0.00 0.00 3.55
5225 5598 4.404394 CCCCACCAATTCCCTAAAATACAC 59.596 45.833 0.00 0.00 0.00 2.90
5226 5599 4.295238 TCCCCACCAATTCCCTAAAATACA 59.705 41.667 0.00 0.00 0.00 2.29
5227 5600 4.874199 TCCCCACCAATTCCCTAAAATAC 58.126 43.478 0.00 0.00 0.00 1.89
5228 5601 5.759773 ATCCCCACCAATTCCCTAAAATA 57.240 39.130 0.00 0.00 0.00 1.40
5229 5602 4.642489 ATCCCCACCAATTCCCTAAAAT 57.358 40.909 0.00 0.00 0.00 1.82
5230 5603 4.427956 AATCCCCACCAATTCCCTAAAA 57.572 40.909 0.00 0.00 0.00 1.52
5231 5604 5.400886 GGATAATCCCCACCAATTCCCTAAA 60.401 44.000 0.00 0.00 0.00 1.85
5232 5605 4.107311 GGATAATCCCCACCAATTCCCTAA 59.893 45.833 0.00 0.00 0.00 2.69
5233 5606 3.660669 GGATAATCCCCACCAATTCCCTA 59.339 47.826 0.00 0.00 0.00 3.53
5234 5607 2.450886 GGATAATCCCCACCAATTCCCT 59.549 50.000 0.00 0.00 0.00 4.20
5235 5608 2.889512 GGATAATCCCCACCAATTCCC 58.110 52.381 0.00 0.00 0.00 3.97
5247 5620 1.478105 GGGGTTTGACCGGGATAATCC 60.478 57.143 6.32 5.90 39.83 3.01
5248 5621 1.493446 AGGGGTTTGACCGGGATAATC 59.507 52.381 6.32 0.00 39.83 1.75
5249 5622 1.603634 AGGGGTTTGACCGGGATAAT 58.396 50.000 6.32 0.00 39.83 1.28
5250 5623 2.267160 TAGGGGTTTGACCGGGATAA 57.733 50.000 6.32 0.00 39.83 1.75
5251 5624 2.267160 TTAGGGGTTTGACCGGGATA 57.733 50.000 6.32 0.00 39.83 2.59
5252 5625 1.374572 TTTAGGGGTTTGACCGGGAT 58.625 50.000 6.32 0.00 39.83 3.85
5253 5626 1.282738 GATTTAGGGGTTTGACCGGGA 59.717 52.381 6.32 0.00 39.83 5.14
5254 5627 1.683938 GGATTTAGGGGTTTGACCGGG 60.684 57.143 6.32 0.00 39.83 5.73
5255 5628 1.683938 GGGATTTAGGGGTTTGACCGG 60.684 57.143 0.00 0.00 39.83 5.28
5256 5629 1.683938 GGGGATTTAGGGGTTTGACCG 60.684 57.143 0.00 0.00 39.83 4.79
5257 5630 1.359818 TGGGGATTTAGGGGTTTGACC 59.640 52.381 0.00 0.00 37.60 4.02
5258 5631 2.225167 TGTGGGGATTTAGGGGTTTGAC 60.225 50.000 0.00 0.00 0.00 3.18
5259 5632 2.074579 TGTGGGGATTTAGGGGTTTGA 58.925 47.619 0.00 0.00 0.00 2.69
5260 5633 2.614134 TGTGGGGATTTAGGGGTTTG 57.386 50.000 0.00 0.00 0.00 2.93
5261 5634 4.140782 GGATATGTGGGGATTTAGGGGTTT 60.141 45.833 0.00 0.00 0.00 3.27
5262 5635 3.401342 GGATATGTGGGGATTTAGGGGTT 59.599 47.826 0.00 0.00 0.00 4.11
5263 5636 2.993863 GGATATGTGGGGATTTAGGGGT 59.006 50.000 0.00 0.00 0.00 4.95
5264 5637 2.311841 GGGATATGTGGGGATTTAGGGG 59.688 54.545 0.00 0.00 0.00 4.79
5265 5638 2.993146 TGGGATATGTGGGGATTTAGGG 59.007 50.000 0.00 0.00 0.00 3.53
5266 5639 3.916349 TCTGGGATATGTGGGGATTTAGG 59.084 47.826 0.00 0.00 0.00 2.69
5267 5640 5.163099 TGTTCTGGGATATGTGGGGATTTAG 60.163 44.000 0.00 0.00 0.00 1.85
5268 5641 4.729370 TGTTCTGGGATATGTGGGGATTTA 59.271 41.667 0.00 0.00 0.00 1.40
5269 5642 3.531397 TGTTCTGGGATATGTGGGGATTT 59.469 43.478 0.00 0.00 0.00 2.17
5270 5643 3.117512 GTGTTCTGGGATATGTGGGGATT 60.118 47.826 0.00 0.00 0.00 3.01
5271 5644 2.443255 GTGTTCTGGGATATGTGGGGAT 59.557 50.000 0.00 0.00 0.00 3.85
5272 5645 1.843851 GTGTTCTGGGATATGTGGGGA 59.156 52.381 0.00 0.00 0.00 4.81
5273 5646 1.133792 GGTGTTCTGGGATATGTGGGG 60.134 57.143 0.00 0.00 0.00 4.96
5274 5647 1.563879 TGGTGTTCTGGGATATGTGGG 59.436 52.381 0.00 0.00 0.00 4.61
5275 5648 3.582998 ATGGTGTTCTGGGATATGTGG 57.417 47.619 0.00 0.00 0.00 4.17
5276 5649 4.098349 CCAAATGGTGTTCTGGGATATGTG 59.902 45.833 0.00 0.00 0.00 3.21
5277 5650 4.280819 CCAAATGGTGTTCTGGGATATGT 58.719 43.478 0.00 0.00 0.00 2.29
5278 5651 4.924305 CCAAATGGTGTTCTGGGATATG 57.076 45.455 0.00 0.00 0.00 1.78
5290 5663 7.040755 TGTCAAATACACTAGAACCAAATGGTG 60.041 37.037 5.73 0.00 39.59 4.17
5291 5664 7.001674 TGTCAAATACACTAGAACCAAATGGT 58.998 34.615 0.00 0.00 41.35 3.55
5292 5665 7.447374 TGTCAAATACACTAGAACCAAATGG 57.553 36.000 0.00 0.00 35.45 3.16
5293 5666 8.514594 ACATGTCAAATACACTAGAACCAAATG 58.485 33.333 0.00 0.00 42.09 2.32
5294 5667 8.635765 ACATGTCAAATACACTAGAACCAAAT 57.364 30.769 0.00 0.00 42.09 2.32
5295 5668 8.458573 AACATGTCAAATACACTAGAACCAAA 57.541 30.769 0.00 0.00 42.09 3.28
5296 5669 8.458573 AAACATGTCAAATACACTAGAACCAA 57.541 30.769 0.00 0.00 42.09 3.67
5297 5670 7.717436 TGAAACATGTCAAATACACTAGAACCA 59.283 33.333 0.00 0.00 42.09 3.67
5298 5671 8.094798 TGAAACATGTCAAATACACTAGAACC 57.905 34.615 0.00 0.00 42.09 3.62
5299 5672 9.760660 GATGAAACATGTCAAATACACTAGAAC 57.239 33.333 0.00 0.00 42.09 3.01
5300 5673 8.946085 GGATGAAACATGTCAAATACACTAGAA 58.054 33.333 0.00 0.00 42.09 2.10
5301 5674 7.552687 GGGATGAAACATGTCAAATACACTAGA 59.447 37.037 0.00 0.00 42.09 2.43
5302 5675 7.201732 GGGGATGAAACATGTCAAATACACTAG 60.202 40.741 0.00 0.00 42.09 2.57
5303 5676 6.601613 GGGGATGAAACATGTCAAATACACTA 59.398 38.462 0.00 0.00 42.09 2.74
5304 5677 5.418840 GGGGATGAAACATGTCAAATACACT 59.581 40.000 0.00 0.00 42.09 3.55
5305 5678 5.184864 TGGGGATGAAACATGTCAAATACAC 59.815 40.000 0.00 0.00 42.09 2.90
5306 5679 5.184864 GTGGGGATGAAACATGTCAAATACA 59.815 40.000 0.00 0.00 43.86 2.29
5307 5680 5.184864 TGTGGGGATGAAACATGTCAAATAC 59.815 40.000 0.00 0.00 0.00 1.89
5308 5681 5.328565 TGTGGGGATGAAACATGTCAAATA 58.671 37.500 0.00 0.00 0.00 1.40
5309 5682 4.158786 TGTGGGGATGAAACATGTCAAAT 58.841 39.130 0.00 0.00 0.00 2.32
5310 5683 3.570540 TGTGGGGATGAAACATGTCAAA 58.429 40.909 0.00 0.00 0.00 2.69
5311 5684 3.235750 TGTGGGGATGAAACATGTCAA 57.764 42.857 0.00 0.00 0.00 3.18
5312 5685 2.967745 TGTGGGGATGAAACATGTCA 57.032 45.000 0.00 0.00 0.00 3.58
5313 5686 4.381932 GGAAATGTGGGGATGAAACATGTC 60.382 45.833 0.00 0.00 37.68 3.06
5314 5687 3.515104 GGAAATGTGGGGATGAAACATGT 59.485 43.478 0.00 0.00 34.82 3.21
5315 5688 3.118665 GGGAAATGTGGGGATGAAACATG 60.119 47.826 0.00 0.00 34.82 3.21
5316 5689 3.106827 GGGAAATGTGGGGATGAAACAT 58.893 45.455 0.00 0.00 36.10 2.71
5317 5690 2.534990 GGGAAATGTGGGGATGAAACA 58.465 47.619 0.00 0.00 0.00 2.83
5318 5691 1.831106 GGGGAAATGTGGGGATGAAAC 59.169 52.381 0.00 0.00 0.00 2.78
5319 5692 1.434773 TGGGGAAATGTGGGGATGAAA 59.565 47.619 0.00 0.00 0.00 2.69
5320 5693 1.088269 TGGGGAAATGTGGGGATGAA 58.912 50.000 0.00 0.00 0.00 2.57
5321 5694 0.334676 GTGGGGAAATGTGGGGATGA 59.665 55.000 0.00 0.00 0.00 2.92
5322 5695 0.040942 TGTGGGGAAATGTGGGGATG 59.959 55.000 0.00 0.00 0.00 3.51
5323 5696 0.789687 TTGTGGGGAAATGTGGGGAT 59.210 50.000 0.00 0.00 0.00 3.85
5324 5697 0.563173 TTTGTGGGGAAATGTGGGGA 59.437 50.000 0.00 0.00 0.00 4.81
5325 5698 1.554617 GATTTGTGGGGAAATGTGGGG 59.445 52.381 0.00 0.00 0.00 4.96
5326 5699 1.554617 GGATTTGTGGGGAAATGTGGG 59.445 52.381 0.00 0.00 0.00 4.61
5327 5700 1.554617 GGGATTTGTGGGGAAATGTGG 59.445 52.381 0.00 0.00 0.00 4.17
5328 5701 1.554617 GGGGATTTGTGGGGAAATGTG 59.445 52.381 0.00 0.00 0.00 3.21
5329 5702 1.150986 TGGGGATTTGTGGGGAAATGT 59.849 47.619 0.00 0.00 0.00 2.71
5330 5703 1.949799 TGGGGATTTGTGGGGAAATG 58.050 50.000 0.00 0.00 0.00 2.32
5331 5704 2.642311 GTTTGGGGATTTGTGGGGAAAT 59.358 45.455 0.00 0.00 0.00 2.17
5332 5705 2.050918 GTTTGGGGATTTGTGGGGAAA 58.949 47.619 0.00 0.00 0.00 3.13
5333 5706 1.221781 AGTTTGGGGATTTGTGGGGAA 59.778 47.619 0.00 0.00 0.00 3.97
5334 5707 0.863956 AGTTTGGGGATTTGTGGGGA 59.136 50.000 0.00 0.00 0.00 4.81
5335 5708 1.203174 AGAGTTTGGGGATTTGTGGGG 60.203 52.381 0.00 0.00 0.00 4.96
5336 5709 2.309136 AGAGTTTGGGGATTTGTGGG 57.691 50.000 0.00 0.00 0.00 4.61
5337 5710 3.758554 CACTAGAGTTTGGGGATTTGTGG 59.241 47.826 0.00 0.00 0.00 4.17
5338 5711 3.191371 GCACTAGAGTTTGGGGATTTGTG 59.809 47.826 0.00 0.00 0.00 3.33
5339 5712 3.181434 TGCACTAGAGTTTGGGGATTTGT 60.181 43.478 0.00 0.00 0.00 2.83
5340 5713 3.420893 TGCACTAGAGTTTGGGGATTTG 58.579 45.455 0.00 0.00 0.00 2.32
5341 5714 3.806949 TGCACTAGAGTTTGGGGATTT 57.193 42.857 0.00 0.00 0.00 2.17
5342 5715 4.322057 AATGCACTAGAGTTTGGGGATT 57.678 40.909 0.00 0.00 0.00 3.01
5343 5716 4.322057 AAATGCACTAGAGTTTGGGGAT 57.678 40.909 0.00 0.00 0.00 3.85
5344 5717 3.806949 AAATGCACTAGAGTTTGGGGA 57.193 42.857 0.00 0.00 0.00 4.81
5345 5718 4.524328 AGAAAAATGCACTAGAGTTTGGGG 59.476 41.667 0.00 0.00 0.00 4.96
5346 5719 5.241506 TGAGAAAAATGCACTAGAGTTTGGG 59.758 40.000 0.00 0.00 0.00 4.12
5347 5720 6.317789 TGAGAAAAATGCACTAGAGTTTGG 57.682 37.500 0.00 0.00 0.00 3.28
5348 5721 9.334693 GTATTGAGAAAAATGCACTAGAGTTTG 57.665 33.333 0.00 0.00 0.00 2.93
5349 5722 8.515414 GGTATTGAGAAAAATGCACTAGAGTTT 58.485 33.333 0.00 0.00 0.00 2.66
5350 5723 7.121315 GGGTATTGAGAAAAATGCACTAGAGTT 59.879 37.037 0.00 0.00 0.00 3.01
5351 5724 6.599638 GGGTATTGAGAAAAATGCACTAGAGT 59.400 38.462 0.00 0.00 0.00 3.24
5352 5725 6.599244 TGGGTATTGAGAAAAATGCACTAGAG 59.401 38.462 0.00 0.00 0.00 2.43
5353 5726 6.480763 TGGGTATTGAGAAAAATGCACTAGA 58.519 36.000 0.00 0.00 0.00 2.43
5354 5727 6.757897 TGGGTATTGAGAAAAATGCACTAG 57.242 37.500 0.00 0.00 0.00 2.57
5355 5728 7.716799 ATTGGGTATTGAGAAAAATGCACTA 57.283 32.000 0.00 0.00 0.00 2.74
5356 5729 6.610075 ATTGGGTATTGAGAAAAATGCACT 57.390 33.333 0.00 0.00 0.00 4.40
5357 5730 7.275560 GTGTATTGGGTATTGAGAAAAATGCAC 59.724 37.037 0.00 0.00 33.97 4.57
5358 5731 7.178274 AGTGTATTGGGTATTGAGAAAAATGCA 59.822 33.333 0.00 0.00 0.00 3.96
5359 5732 7.547227 AGTGTATTGGGTATTGAGAAAAATGC 58.453 34.615 0.00 0.00 0.00 3.56
5361 5734 9.975218 AGTAGTGTATTGGGTATTGAGAAAAAT 57.025 29.630 0.00 0.00 0.00 1.82
5362 5735 9.444600 GAGTAGTGTATTGGGTATTGAGAAAAA 57.555 33.333 0.00 0.00 0.00 1.94
5363 5736 8.044908 GGAGTAGTGTATTGGGTATTGAGAAAA 58.955 37.037 0.00 0.00 0.00 2.29
5364 5737 7.402071 AGGAGTAGTGTATTGGGTATTGAGAAA 59.598 37.037 0.00 0.00 0.00 2.52
5365 5738 6.901300 AGGAGTAGTGTATTGGGTATTGAGAA 59.099 38.462 0.00 0.00 0.00 2.87
5366 5739 6.441222 AGGAGTAGTGTATTGGGTATTGAGA 58.559 40.000 0.00 0.00 0.00 3.27
5367 5740 6.732896 AGGAGTAGTGTATTGGGTATTGAG 57.267 41.667 0.00 0.00 0.00 3.02
5368 5741 6.552350 GGTAGGAGTAGTGTATTGGGTATTGA 59.448 42.308 0.00 0.00 0.00 2.57
5369 5742 6.553852 AGGTAGGAGTAGTGTATTGGGTATTG 59.446 42.308 0.00 0.00 0.00 1.90
5370 5743 6.690569 AGGTAGGAGTAGTGTATTGGGTATT 58.309 40.000 0.00 0.00 0.00 1.89
5371 5744 6.290870 AGGTAGGAGTAGTGTATTGGGTAT 57.709 41.667 0.00 0.00 0.00 2.73
5372 5745 5.739143 AGGTAGGAGTAGTGTATTGGGTA 57.261 43.478 0.00 0.00 0.00 3.69
5373 5746 4.621797 AGGTAGGAGTAGTGTATTGGGT 57.378 45.455 0.00 0.00 0.00 4.51
5374 5747 5.535406 CACTAGGTAGGAGTAGTGTATTGGG 59.465 48.000 0.00 0.00 40.81 4.12
5375 5748 6.636562 CACTAGGTAGGAGTAGTGTATTGG 57.363 45.833 0.00 0.00 40.81 3.16
5382 5755 5.399958 CCCCAATACACTAGGTAGGAGTAGT 60.400 48.000 0.00 0.00 34.92 2.73
5383 5756 5.078256 CCCCAATACACTAGGTAGGAGTAG 58.922 50.000 0.00 0.00 34.92 2.57
5384 5757 4.733472 TCCCCAATACACTAGGTAGGAGTA 59.267 45.833 0.00 0.00 34.92 2.59
5385 5758 3.534747 TCCCCAATACACTAGGTAGGAGT 59.465 47.826 0.00 0.00 34.92 3.85
5386 5759 4.194678 TCCCCAATACACTAGGTAGGAG 57.805 50.000 0.00 0.00 34.92 3.69
5387 5760 4.845530 ATCCCCAATACACTAGGTAGGA 57.154 45.455 0.00 0.00 34.92 2.94
5388 5761 7.394816 CATTTATCCCCAATACACTAGGTAGG 58.605 42.308 0.00 0.00 34.92 3.18
5389 5762 7.394816 CCATTTATCCCCAATACACTAGGTAG 58.605 42.308 0.00 0.00 34.92 3.18
5390 5763 6.273730 CCCATTTATCCCCAATACACTAGGTA 59.726 42.308 0.00 0.00 36.16 3.08
5391 5764 5.074515 CCCATTTATCCCCAATACACTAGGT 59.925 44.000 0.00 0.00 0.00 3.08
5392 5765 5.516591 CCCCATTTATCCCCAATACACTAGG 60.517 48.000 0.00 0.00 0.00 3.02
5393 5766 5.312178 TCCCCATTTATCCCCAATACACTAG 59.688 44.000 0.00 0.00 0.00 2.57
5394 5767 5.236334 TCCCCATTTATCCCCAATACACTA 58.764 41.667 0.00 0.00 0.00 2.74
5395 5768 4.058731 TCCCCATTTATCCCCAATACACT 58.941 43.478 0.00 0.00 0.00 3.55
5396 5769 4.463050 TCCCCATTTATCCCCAATACAC 57.537 45.455 0.00 0.00 0.00 2.90
5397 5770 5.694978 AATCCCCATTTATCCCCAATACA 57.305 39.130 0.00 0.00 0.00 2.29
5398 5771 6.081356 TCAAATCCCCATTTATCCCCAATAC 58.919 40.000 0.00 0.00 30.51 1.89
5399 5772 6.300626 TCAAATCCCCATTTATCCCCAATA 57.699 37.500 0.00 0.00 30.51 1.90
5400 5773 5.168774 TCAAATCCCCATTTATCCCCAAT 57.831 39.130 0.00 0.00 30.51 3.16
5401 5774 4.633830 TCAAATCCCCATTTATCCCCAA 57.366 40.909 0.00 0.00 30.51 4.12
5402 5775 4.555689 CTTCAAATCCCCATTTATCCCCA 58.444 43.478 0.00 0.00 30.51 4.96
5403 5776 3.903714 CCTTCAAATCCCCATTTATCCCC 59.096 47.826 0.00 0.00 30.51 4.81
5404 5777 3.903714 CCCTTCAAATCCCCATTTATCCC 59.096 47.826 0.00 0.00 30.51 3.85
5405 5778 4.814967 TCCCTTCAAATCCCCATTTATCC 58.185 43.478 0.00 0.00 30.51 2.59
5406 5779 6.239686 CCAATCCCTTCAAATCCCCATTTATC 60.240 42.308 0.00 0.00 30.51 1.75
5407 5780 5.608015 CCAATCCCTTCAAATCCCCATTTAT 59.392 40.000 0.00 0.00 30.51 1.40
5408 5781 4.968080 CCAATCCCTTCAAATCCCCATTTA 59.032 41.667 0.00 0.00 30.51 1.40
5409 5782 3.781965 CCAATCCCTTCAAATCCCCATTT 59.218 43.478 0.00 0.00 31.91 2.32
5410 5783 3.387012 CCAATCCCTTCAAATCCCCATT 58.613 45.455 0.00 0.00 0.00 3.16
5411 5784 2.360638 CCCAATCCCTTCAAATCCCCAT 60.361 50.000 0.00 0.00 0.00 4.00
5412 5785 1.008206 CCCAATCCCTTCAAATCCCCA 59.992 52.381 0.00 0.00 0.00 4.96
5413 5786 1.008327 ACCCAATCCCTTCAAATCCCC 59.992 52.381 0.00 0.00 0.00 4.81
5414 5787 2.110578 CACCCAATCCCTTCAAATCCC 58.889 52.381 0.00 0.00 0.00 3.85
5415 5788 3.100207 TCACCCAATCCCTTCAAATCC 57.900 47.619 0.00 0.00 0.00 3.01
5416 5789 3.448660 CCTTCACCCAATCCCTTCAAATC 59.551 47.826 0.00 0.00 0.00 2.17
5417 5790 3.181407 ACCTTCACCCAATCCCTTCAAAT 60.181 43.478 0.00 0.00 0.00 2.32
5418 5791 2.178984 ACCTTCACCCAATCCCTTCAAA 59.821 45.455 0.00 0.00 0.00 2.69
5419 5792 1.786441 ACCTTCACCCAATCCCTTCAA 59.214 47.619 0.00 0.00 0.00 2.69
5420 5793 1.455822 ACCTTCACCCAATCCCTTCA 58.544 50.000 0.00 0.00 0.00 3.02
5421 5794 2.171003 CAACCTTCACCCAATCCCTTC 58.829 52.381 0.00 0.00 0.00 3.46
5422 5795 1.203174 CCAACCTTCACCCAATCCCTT 60.203 52.381 0.00 0.00 0.00 3.95
5423 5796 0.409484 CCAACCTTCACCCAATCCCT 59.591 55.000 0.00 0.00 0.00 4.20
5424 5797 0.614697 CCCAACCTTCACCCAATCCC 60.615 60.000 0.00 0.00 0.00 3.85
5425 5798 0.614697 CCCCAACCTTCACCCAATCC 60.615 60.000 0.00 0.00 0.00 3.01
5426 5799 0.114364 ACCCCAACCTTCACCCAATC 59.886 55.000 0.00 0.00 0.00 2.67
5427 5800 0.565674 AACCCCAACCTTCACCCAAT 59.434 50.000 0.00 0.00 0.00 3.16
5428 5801 0.340208 AAACCCCAACCTTCACCCAA 59.660 50.000 0.00 0.00 0.00 4.12
5429 5802 0.105913 GAAACCCCAACCTTCACCCA 60.106 55.000 0.00 0.00 0.00 4.51
5430 5803 0.105913 TGAAACCCCAACCTTCACCC 60.106 55.000 0.00 0.00 0.00 4.61
5431 5804 1.037493 GTGAAACCCCAACCTTCACC 58.963 55.000 3.35 0.00 41.94 4.02
5464 5837 4.265856 AGGGTTTTTGAGGGGATAATCC 57.734 45.455 0.00 0.00 35.23 3.01
5465 5838 6.014771 ACTAGGGTTTTTGAGGGGATAATC 57.985 41.667 0.00 0.00 0.00 1.75
5466 5839 6.126273 GGTACTAGGGTTTTTGAGGGGATAAT 60.126 42.308 0.00 0.00 0.00 1.28
5467 5840 5.192321 GGTACTAGGGTTTTTGAGGGGATAA 59.808 44.000 0.00 0.00 0.00 1.75
5468 5841 4.723285 GGTACTAGGGTTTTTGAGGGGATA 59.277 45.833 0.00 0.00 0.00 2.59
5469 5842 3.526430 GGTACTAGGGTTTTTGAGGGGAT 59.474 47.826 0.00 0.00 0.00 3.85
5470 5843 2.914941 GGTACTAGGGTTTTTGAGGGGA 59.085 50.000 0.00 0.00 0.00 4.81
5471 5844 2.645797 TGGTACTAGGGTTTTTGAGGGG 59.354 50.000 0.00 0.00 0.00 4.79
5472 5845 4.376225 TTGGTACTAGGGTTTTTGAGGG 57.624 45.455 0.00 0.00 0.00 4.30
5473 5846 5.134661 TGTTTGGTACTAGGGTTTTTGAGG 58.865 41.667 0.00 0.00 0.00 3.86
5474 5847 6.238925 CCTTGTTTGGTACTAGGGTTTTTGAG 60.239 42.308 0.00 0.00 43.51 3.02
5475 5848 5.595133 CCTTGTTTGGTACTAGGGTTTTTGA 59.405 40.000 0.00 0.00 43.51 2.69
5476 5849 5.737922 GCCTTGTTTGGTACTAGGGTTTTTG 60.738 44.000 7.35 0.00 46.19 2.44
5477 5850 4.342951 GCCTTGTTTGGTACTAGGGTTTTT 59.657 41.667 7.35 0.00 46.19 1.94
5478 5851 3.893200 GCCTTGTTTGGTACTAGGGTTTT 59.107 43.478 7.35 0.00 46.19 2.43
5479 5852 3.493334 GCCTTGTTTGGTACTAGGGTTT 58.507 45.455 7.35 0.00 46.19 3.27
5480 5853 2.224942 GGCCTTGTTTGGTACTAGGGTT 60.225 50.000 0.00 0.00 46.19 4.11
5481 5854 1.353358 GGCCTTGTTTGGTACTAGGGT 59.647 52.381 0.00 0.00 46.19 4.34
5482 5855 1.633945 AGGCCTTGTTTGGTACTAGGG 59.366 52.381 0.00 0.00 46.19 3.53
5484 5857 3.695830 TCAGGCCTTGTTTGGTACTAG 57.304 47.619 0.00 0.00 0.00 2.57
5485 5858 3.585289 TCATCAGGCCTTGTTTGGTACTA 59.415 43.478 0.00 0.00 0.00 1.82
5486 5859 2.375174 TCATCAGGCCTTGTTTGGTACT 59.625 45.455 0.00 0.00 0.00 2.73
5487 5860 2.749621 CTCATCAGGCCTTGTTTGGTAC 59.250 50.000 0.00 0.00 0.00 3.34
5488 5861 2.290896 CCTCATCAGGCCTTGTTTGGTA 60.291 50.000 0.00 0.00 30.98 3.25
5489 5862 1.548582 CCTCATCAGGCCTTGTTTGGT 60.549 52.381 0.00 0.00 30.98 3.67
5490 5863 1.180029 CCTCATCAGGCCTTGTTTGG 58.820 55.000 0.00 0.00 30.98 3.28
5491 5864 1.180029 CCCTCATCAGGCCTTGTTTG 58.820 55.000 0.00 0.00 38.72 2.93
5492 5865 0.040204 CCCCTCATCAGGCCTTGTTT 59.960 55.000 0.00 0.00 38.72 2.83
5493 5866 0.846427 TCCCCTCATCAGGCCTTGTT 60.846 55.000 0.00 0.00 38.72 2.83
5494 5867 0.846427 TTCCCCTCATCAGGCCTTGT 60.846 55.000 0.00 0.00 38.72 3.16
5495 5868 0.106819 CTTCCCCTCATCAGGCCTTG 60.107 60.000 0.00 0.00 38.72 3.61
5496 5869 0.253347 TCTTCCCCTCATCAGGCCTT 60.253 55.000 0.00 0.00 38.72 4.35
5497 5870 0.693767 CTCTTCCCCTCATCAGGCCT 60.694 60.000 0.00 0.00 38.72 5.19
5498 5871 0.692419 TCTCTTCCCCTCATCAGGCC 60.692 60.000 0.00 0.00 38.72 5.19
5499 5872 1.207791 TTCTCTTCCCCTCATCAGGC 58.792 55.000 0.00 0.00 38.72 4.85
5500 5873 2.092699 GGTTTCTCTTCCCCTCATCAGG 60.093 54.545 0.00 0.00 39.98 3.86
5599 5972 1.344438 TCTTCCACACAATCTCAGCGT 59.656 47.619 0.00 0.00 0.00 5.07
5601 5974 1.728971 CGTCTTCCACACAATCTCAGC 59.271 52.381 0.00 0.00 0.00 4.26
5613 5986 2.426024 CTCCGGTATCTTTCGTCTTCCA 59.574 50.000 0.00 0.00 0.00 3.53
5614 5987 2.223758 CCTCCGGTATCTTTCGTCTTCC 60.224 54.545 0.00 0.00 0.00 3.46
5639 6012 9.209175 GAAAATATCAACTATGTAGCTTCGGAT 57.791 33.333 0.00 0.00 0.00 4.18
5666 6039 5.697633 GTGCATGTTCTTCCAAAATCACATT 59.302 36.000 0.00 0.00 0.00 2.71
5878 6255 1.149101 ACAGGGCATACATAAGGGGG 58.851 55.000 0.00 0.00 0.00 5.40
5879 6256 1.494721 ACACAGGGCATACATAAGGGG 59.505 52.381 0.00 0.00 0.00 4.79
5880 6257 2.951642 CAACACAGGGCATACATAAGGG 59.048 50.000 0.00 0.00 0.00 3.95
5881 6258 3.884895 TCAACACAGGGCATACATAAGG 58.115 45.455 0.00 0.00 0.00 2.69
5946 6324 3.641436 ACATCTGCGGGTCATACATTAGA 59.359 43.478 0.00 0.00 0.00 2.10
5960 6338 3.120234 TGCAGTACAAAATCACATCTGCG 60.120 43.478 0.00 0.00 46.21 5.18
5962 6340 7.085746 TGAAATGCAGTACAAAATCACATCTG 58.914 34.615 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.