Multiple sequence alignment - TraesCS6A01G144700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G144700 chr6A 100.000 7323 0 0 1 7323 121891555 121884233 0.000000e+00 13524.0
1 TraesCS6A01G144700 chr6A 94.118 68 4 0 2054 2121 33554041 33553974 3.610000e-18 104.0
2 TraesCS6A01G144700 chr6D 96.298 2512 74 7 2480 4982 101232643 101230142 0.000000e+00 4106.0
3 TraesCS6A01G144700 chr6D 94.062 1583 73 10 885 2458 101234202 101232632 0.000000e+00 2383.0
4 TraesCS6A01G144700 chr6D 95.557 1283 30 11 5339 6620 101229849 101228593 0.000000e+00 2028.0
5 TraesCS6A01G144700 chr6D 91.683 505 35 3 1 499 101235356 101234853 0.000000e+00 693.0
6 TraesCS6A01G144700 chr6D 93.976 332 12 4 4877 5206 101230175 101229850 5.100000e-136 496.0
7 TraesCS6A01G144700 chr6D 94.245 139 6 2 501 638 101234812 101234675 2.070000e-50 211.0
8 TraesCS6A01G144700 chr6D 90.511 137 12 1 7187 7323 101228441 101228306 5.840000e-41 180.0
9 TraesCS6A01G144700 chr6D 87.805 123 3 4 746 868 101234677 101234567 4.610000e-27 134.0
10 TraesCS6A01G144700 chr6B 94.381 1922 86 10 501 2407 185663297 185661383 0.000000e+00 2931.0
11 TraesCS6A01G144700 chr6B 94.775 1397 41 7 2472 3859 185661354 185659981 0.000000e+00 2146.0
12 TraesCS6A01G144700 chr6B 95.470 1148 46 4 3844 4990 185659916 185658774 0.000000e+00 1827.0
13 TraesCS6A01G144700 chr6B 98.111 794 15 0 5327 6120 185658488 185657695 0.000000e+00 1384.0
14 TraesCS6A01G144700 chr6B 91.124 507 38 3 1 501 185663840 185663335 0.000000e+00 680.0
15 TraesCS6A01G144700 chr6B 95.562 338 13 1 4877 5212 185658815 185658478 2.320000e-149 540.0
16 TraesCS6A01G144700 chr6B 80.729 384 70 4 1686 2067 567710208 567710589 5.560000e-76 296.0
17 TraesCS6A01G144700 chr6B 96.842 95 2 1 3540 3634 548134681 548134588 2.740000e-34 158.0
18 TraesCS6A01G144700 chr6B 88.525 61 6 1 7228 7288 132661291 132661350 1.020000e-08 73.1
19 TraesCS6A01G144700 chr2D 87.780 491 41 17 6631 7111 216326445 216325964 2.310000e-154 556.0
20 TraesCS6A01G144700 chr2D 90.635 299 27 1 3623 3921 272804071 272804368 5.320000e-106 396.0
21 TraesCS6A01G144700 chr2D 89.404 302 31 1 3623 3924 630266814 630266514 5.360000e-101 379.0
22 TraesCS6A01G144700 chr2D 81.050 438 52 16 1686 2121 446886779 446886371 3.300000e-83 320.0
23 TraesCS6A01G144700 chr2D 79.592 392 72 8 1681 2068 557689113 557688726 2.600000e-69 274.0
24 TraesCS6A01G144700 chr2D 97.727 132 3 0 5209 5340 536091153 536091022 2.060000e-55 228.0
25 TraesCS6A01G144700 chr2D 100.000 87 0 0 3539 3625 307490085 307490171 2.110000e-35 161.0
26 TraesCS6A01G144700 chr2D 94.828 58 3 0 2064 2121 446886270 446886213 2.810000e-14 91.6
27 TraesCS6A01G144700 chr2D 100.000 37 0 0 5174 5210 172409702 172409666 1.320000e-07 69.4
28 TraesCS6A01G144700 chr5A 86.863 510 48 15 6629 7126 651525277 651525779 2.990000e-153 553.0
29 TraesCS6A01G144700 chr5A 83.521 443 68 5 1681 2121 411477684 411478123 6.840000e-110 409.0
30 TraesCS6A01G144700 chr5A 78.902 346 69 4 1778 2121 702685498 702685155 1.590000e-56 231.0
31 TraesCS6A01G144700 chr5A 91.720 157 12 1 5179 5335 1300493 1300338 4.450000e-52 217.0
32 TraesCS6A01G144700 chr5A 91.026 78 7 0 2911 2988 395056008 395055931 1.000000e-18 106.0
33 TraesCS6A01G144700 chr3D 93.407 364 22 2 6631 6992 608919507 608919144 8.360000e-149 538.0
34 TraesCS6A01G144700 chr3D 79.279 444 83 8 1683 2121 481918161 481917722 1.190000e-77 302.0
35 TraesCS6A01G144700 chr3D 95.745 141 5 1 5197 5337 382748023 382747884 7.390000e-55 226.0
36 TraesCS6A01G144700 chr3D 94.937 79 4 0 7030 7108 608919147 608919069 2.770000e-24 124.0
37 TraesCS6A01G144700 chr3D 83.607 122 10 6 2912 3023 338316425 338316304 1.000000e-18 106.0
38 TraesCS6A01G144700 chr3D 97.561 41 0 1 5176 5215 84483277 84483317 1.320000e-07 69.4
39 TraesCS6A01G144700 chr3D 97.436 39 1 0 5174 5212 126949081 126949043 4.740000e-07 67.6
40 TraesCS6A01G144700 chr1D 86.207 522 41 15 6629 7126 193661387 193661901 3.010000e-148 536.0
41 TraesCS6A01G144700 chr1D 90.397 302 28 1 3623 3924 254533784 254533484 5.320000e-106 396.0
42 TraesCS6A01G144700 chr1D 93.182 176 9 2 6629 6801 470916051 470916226 9.430000e-64 255.0
43 TraesCS6A01G144700 chr3A 85.300 517 53 19 6629 7126 21271608 21272120 5.070000e-141 512.0
44 TraesCS6A01G144700 chr3A 81.679 524 39 20 6629 7128 140966611 140966121 4.150000e-102 383.0
45 TraesCS6A01G144700 chr3A 89.369 301 31 1 3624 3924 695638586 695638287 1.930000e-100 377.0
46 TraesCS6A01G144700 chr3A 83.158 95 14 2 7214 7307 750495430 750495337 1.310000e-12 86.1
47 TraesCS6A01G144700 chr3A 100.000 41 0 0 7129 7169 140966135 140966095 7.880000e-10 76.8
48 TraesCS6A01G144700 chr2A 90.066 302 28 2 3623 3924 394050907 394050608 2.480000e-104 390.0
49 TraesCS6A01G144700 chr2A 87.500 136 11 5 6755 6889 48572414 48572544 1.270000e-32 152.0
50 TraesCS6A01G144700 chr2A 100.000 37 0 0 5174 5210 177658373 177658409 1.320000e-07 69.4
51 TraesCS6A01G144700 chr2A 85.294 68 9 1 7228 7295 549760357 549760291 1.320000e-07 69.4
52 TraesCS6A01G144700 chr5D 89.632 299 30 1 3623 3921 432295122 432295419 5.360000e-101 379.0
53 TraesCS6A01G144700 chr5D 89.404 302 31 1 3623 3924 449150550 449150250 5.360000e-101 379.0
54 TraesCS6A01G144700 chr5D 99.219 128 1 0 5208 5335 326368796 326368923 1.590000e-56 231.0
55 TraesCS6A01G144700 chr3B 82.232 439 73 5 1681 2116 555156626 555157062 2.490000e-99 374.0
56 TraesCS6A01G144700 chr3B 91.447 152 11 1 6977 7126 752208810 752208961 2.680000e-49 207.0
57 TraesCS6A01G144700 chr3B 86.154 130 11 5 6755 6881 125545005 125545130 4.610000e-27 134.0
58 TraesCS6A01G144700 chr3B 95.522 67 3 0 3419 3485 173890455 173890521 2.790000e-19 108.0
59 TraesCS6A01G144700 chr3B 75.789 190 29 9 6938 7110 39673279 39673090 6.090000e-11 80.5
60 TraesCS6A01G144700 chr3B 97.436 39 1 0 5174 5212 181288846 181288808 4.740000e-07 67.6
61 TraesCS6A01G144700 chr7D 85.484 372 36 13 6749 7111 568816018 568816380 8.970000e-99 372.0
62 TraesCS6A01G144700 chr7D 99.219 128 1 0 5209 5336 154192997 154193124 1.590000e-56 231.0
63 TraesCS6A01G144700 chr7D 93.836 146 7 2 5209 5352 436663634 436663779 1.240000e-52 219.0
64 TraesCS6A01G144700 chr7D 96.739 92 3 0 3537 3628 81911042 81910951 3.540000e-33 154.0
65 TraesCS6A01G144700 chr7D 86.232 138 13 5 6755 6890 478780416 478780549 2.130000e-30 145.0
66 TraesCS6A01G144700 chr7D 95.604 91 3 1 6629 6718 568815930 568816020 2.130000e-30 145.0
67 TraesCS6A01G144700 chr7D 93.590 78 5 0 2911 2988 153584865 153584942 4.640000e-22 117.0
68 TraesCS6A01G144700 chr7D 79.200 125 14 11 2003 2121 162204478 162204360 7.880000e-10 76.8
69 TraesCS6A01G144700 chr4B 78.626 393 78 5 1683 2071 526926204 526925814 9.430000e-64 255.0
70 TraesCS6A01G144700 chr4B 95.789 95 4 0 3540 3634 91298314 91298408 3.540000e-33 154.0
71 TraesCS6A01G144700 chr4B 78.030 264 35 16 1845 2107 666807140 666807381 2.130000e-30 145.0
72 TraesCS6A01G144700 chr4B 92.683 82 5 1 2908 2988 566977282 566977201 4.640000e-22 117.0
73 TraesCS6A01G144700 chr4B 94.030 67 4 0 3419 3485 209269594 209269528 1.300000e-17 102.0
74 TraesCS6A01G144700 chr7A 98.507 134 2 0 5204 5337 442265886 442265753 3.420000e-58 237.0
75 TraesCS6A01G144700 chr7A 82.593 270 41 6 1682 1949 681582153 681582418 4.420000e-57 233.0
76 TraesCS6A01G144700 chr7A 96.970 99 1 2 3528 3625 184126727 184126824 1.630000e-36 165.0
77 TraesCS6A01G144700 chr1B 98.473 131 2 0 5206 5336 623731982 623732112 1.590000e-56 231.0
78 TraesCS6A01G144700 chr1B 90.441 136 13 0 1986 2121 172012399 172012264 5.840000e-41 180.0
79 TraesCS6A01G144700 chr1B 95.918 49 1 1 7240 7288 660917454 660917501 2.190000e-10 78.7
80 TraesCS6A01G144700 chr1B 100.000 39 0 0 5174 5212 143448669 143448707 1.020000e-08 73.1
81 TraesCS6A01G144700 chrUn 98.462 130 2 0 5206 5335 11031657 11031786 5.710000e-56 230.0
82 TraesCS6A01G144700 chrUn 92.537 67 5 0 3419 3485 86479769 86479835 6.050000e-16 97.1
83 TraesCS6A01G144700 chrUn 92.537 67 5 0 3419 3485 186189700 186189634 6.050000e-16 97.1
84 TraesCS6A01G144700 chrUn 92.537 67 5 0 3419 3485 304150763 304150829 6.050000e-16 97.1
85 TraesCS6A01G144700 chrUn 92.537 67 5 0 3419 3485 444271065 444271131 6.050000e-16 97.1
86 TraesCS6A01G144700 chrUn 87.931 58 6 1 7240 7297 30689794 30689738 4.740000e-07 67.6
87 TraesCS6A01G144700 chr4A 98.913 92 0 1 3540 3631 570916238 570916148 5.880000e-36 163.0
88 TraesCS6A01G144700 chr4A 93.590 78 5 0 2911 2988 578537052 578536975 4.640000e-22 117.0
89 TraesCS6A01G144700 chr4A 80.220 91 14 4 7219 7307 34288124 34288212 1.710000e-06 65.8
90 TraesCS6A01G144700 chr4D 94.898 98 5 0 3538 3635 383775651 383775554 3.540000e-33 154.0
91 TraesCS6A01G144700 chr4D 94.737 95 5 0 3535 3629 481110275 481110369 1.650000e-31 148.0
92 TraesCS6A01G144700 chr5B 93.590 78 5 0 2911 2988 300394465 300394542 4.640000e-22 117.0
93 TraesCS6A01G144700 chr5B 95.385 65 3 0 3419 3483 446659135 446659199 3.610000e-18 104.0
94 TraesCS6A01G144700 chr2B 92.683 82 5 1 2908 2988 743335099 743335018 4.640000e-22 117.0
95 TraesCS6A01G144700 chr7B 82.292 96 15 2 7201 7295 35986876 35986782 1.690000e-11 82.4
96 TraesCS6A01G144700 chr7B 84.932 73 9 2 7223 7295 88565821 88565751 1.020000e-08 73.1
97 TraesCS6A01G144700 chr1A 85.185 54 6 2 2054 2106 41832158 41832106 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G144700 chr6A 121884233 121891555 7322 True 13524.000000 13524 100.000000 1 7323 1 chr6A.!!$R2 7322
1 TraesCS6A01G144700 chr6D 101228306 101235356 7050 True 1278.875000 4106 93.017125 1 7323 8 chr6D.!!$R1 7322
2 TraesCS6A01G144700 chr6B 185657695 185663840 6145 True 1584.666667 2931 94.903833 1 6120 6 chr6B.!!$R2 6119
3 TraesCS6A01G144700 chr2D 446886213 446886779 566 True 205.800000 320 87.939000 1686 2121 2 chr2D.!!$R6 435
4 TraesCS6A01G144700 chr5A 651525277 651525779 502 False 553.000000 553 86.863000 6629 7126 1 chr5A.!!$F2 497
5 TraesCS6A01G144700 chr1D 193661387 193661901 514 False 536.000000 536 86.207000 6629 7126 1 chr1D.!!$F1 497
6 TraesCS6A01G144700 chr3A 21271608 21272120 512 False 512.000000 512 85.300000 6629 7126 1 chr3A.!!$F1 497
7 TraesCS6A01G144700 chr3A 140966095 140966611 516 True 229.900000 383 90.839500 6629 7169 2 chr3A.!!$R3 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
67 68 0.459489 ATGCAAACACGCAACCAAGT 59.541 45.000 0.00 0.00 46.87 3.16 F
564 610 0.693049 ATCCCAACCGCCATCCTATC 59.307 55.000 0.00 0.00 0.00 2.08 F
1362 1757 0.739112 CTCTCGCCCTGCTTTGTCTC 60.739 60.000 0.00 0.00 0.00 3.36 F
1863 2258 0.754217 AGCCGCAGATCTACCGGTTA 60.754 55.000 25.79 0.93 43.70 2.85 F
3163 3581 1.005805 CAAACCTGGATCATGGACCCA 59.994 52.381 0.00 0.00 0.00 4.51 F
3865 4364 0.729116 ATCTTCAGCAATTCCGCGTG 59.271 50.000 4.92 0.00 36.85 5.34 F
5222 5796 0.467106 GGTAGTACTCCCTCCGTCCC 60.467 65.000 0.00 0.00 0.00 4.46 F
5225 5799 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 1741 0.036732 AATGAGACAAAGCAGGGCGA 59.963 50.000 0.00 0.00 0.00 5.54 R
2469 2879 0.035534 TGCCGCTTTTGATCTAGCCA 60.036 50.000 8.71 1.63 33.86 4.75 R
2470 2880 1.002033 CATGCCGCTTTTGATCTAGCC 60.002 52.381 8.71 0.00 33.86 3.93 R
3537 3956 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90 R
3989 4488 0.039527 GAAAGGCACGCAAACGGAAT 60.040 50.000 0.00 0.00 46.04 3.01 R
5206 5780 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73 R
6224 6799 0.106868 TATGAGCTCGGGACTTCGGA 60.107 55.000 9.64 0.00 0.00 4.55 R
7170 7803 0.179056 TTAAGGGCAGTGATAGGCGC 60.179 55.000 0.00 0.00 42.61 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 0.459489 ATGCAAACACGCAACCAAGT 59.541 45.000 0.00 0.00 46.87 3.16
179 180 2.161855 GTGTCCCATCACAAAGCATCA 58.838 47.619 0.00 0.00 38.12 3.07
207 208 7.427989 AAAGGAATACAACTACCGAATAGGA 57.572 36.000 0.00 0.00 45.00 2.94
265 266 8.956426 CCTTAATTTTCACTAATGTTCAGGCTA 58.044 33.333 0.00 0.00 0.00 3.93
348 349 3.054434 CCTCATGTGTCTAATGGGACCAA 60.054 47.826 0.00 0.00 35.54 3.67
353 354 2.482721 GTGTCTAATGGGACCAAACGTG 59.517 50.000 0.00 0.00 35.54 4.49
400 401 9.828852 GTCATACCAAACTCTATATTACTCTCG 57.171 37.037 0.00 0.00 0.00 4.04
410 411 9.968870 ACTCTATATTACTCTCGTTTTCATTCC 57.031 33.333 0.00 0.00 0.00 3.01
414 415 5.477607 TTACTCTCGTTTTCATTCCCTGA 57.522 39.130 0.00 0.00 0.00 3.86
422 423 4.436852 CGTTTTCATTCCCTGAATACCGTG 60.437 45.833 3.92 0.00 43.30 4.94
428 429 3.819564 TCCCTGAATACCGTGATGAAG 57.180 47.619 0.00 0.00 0.00 3.02
448 449 7.333528 TGAAGCCTACCAATAATTTCATCAC 57.666 36.000 0.00 0.00 0.00 3.06
452 453 6.205464 AGCCTACCAATAATTTCATCACATCG 59.795 38.462 0.00 0.00 0.00 3.84
462 463 3.317603 TCATCACATCGAGCTTGACAA 57.682 42.857 5.59 0.00 0.00 3.18
484 491 8.189119 ACAAGCACAAAATTTCCTATTTCCTA 57.811 30.769 0.00 0.00 0.00 2.94
498 505 8.030913 TCCTATTTCCTAAACATCTAGTTCCC 57.969 38.462 0.00 0.00 40.26 3.97
504 549 4.094442 CCTAAACATCTAGTTCCCGCAAAC 59.906 45.833 0.00 0.00 40.26 2.93
549 595 5.364157 AGGACACTTGTGTAATCTAGATCCC 59.636 44.000 5.51 0.17 0.00 3.85
564 610 0.693049 ATCCCAACCGCCATCCTATC 59.307 55.000 0.00 0.00 0.00 2.08
648 694 3.305897 CCAAAAGCTTGAACCGTGAAAAC 59.694 43.478 0.00 0.00 34.14 2.43
657 703 7.547722 AGCTTGAACCGTGAAAACTAAATTTTT 59.452 29.630 0.00 0.00 40.73 1.94
728 774 7.538678 GTCATGTTCGCATAAAATTTCACTTCT 59.461 33.333 0.00 0.00 35.78 2.85
736 782 8.792538 CGCATAAAATTTCACTTCTCTGAAATC 58.207 33.333 7.43 0.00 45.91 2.17
742 788 1.734465 CACTTCTCTGAAATCCACCGC 59.266 52.381 0.00 0.00 0.00 5.68
835 882 6.183360 ACAACAACAACAAAGCTAGCACTAAT 60.183 34.615 18.83 0.00 0.00 1.73
838 885 6.710744 ACAACAACAAAGCTAGCACTAATAGT 59.289 34.615 18.83 4.19 0.00 2.12
839 886 7.876068 ACAACAACAAAGCTAGCACTAATAGTA 59.124 33.333 18.83 0.00 0.00 1.82
840 887 8.717821 CAACAACAAAGCTAGCACTAATAGTAA 58.282 33.333 18.83 0.00 0.00 2.24
841 888 9.449719 AACAACAAAGCTAGCACTAATAGTAAT 57.550 29.630 18.83 0.00 0.00 1.89
875 1265 2.319890 AAAGCAGACCCAACGACCGT 62.320 55.000 0.00 0.00 0.00 4.83
876 1266 2.710724 AAGCAGACCCAACGACCGTC 62.711 60.000 0.00 0.00 0.00 4.79
947 1342 2.971598 CGCCTCCACCACCAGGAAT 61.972 63.158 0.00 0.00 38.69 3.01
1193 1588 4.593864 GCCGACGAGCTCATCCCC 62.594 72.222 15.40 0.00 0.00 4.81
1236 1631 3.175710 ACCACCCTTCCAAGCGGT 61.176 61.111 0.00 0.00 32.17 5.68
1353 1748 3.465403 CCCAGGTCTCTCGCCCTG 61.465 72.222 0.00 0.00 46.43 4.45
1354 1749 4.154347 CCAGGTCTCTCGCCCTGC 62.154 72.222 0.00 0.00 45.68 4.85
1362 1757 0.739112 CTCTCGCCCTGCTTTGTCTC 60.739 60.000 0.00 0.00 0.00 3.36
1483 1878 1.375652 CTGTGCCTGGAGCTGTGAG 60.376 63.158 0.00 0.00 44.23 3.51
1620 2015 1.327303 GGTGTTGGATGCTGAAACCA 58.673 50.000 0.00 0.00 0.00 3.67
1653 2048 6.065374 TGTTGTGAAGTTAGGGCATTTCTAA 58.935 36.000 0.00 0.00 0.00 2.10
1654 2049 6.016610 TGTTGTGAAGTTAGGGCATTTCTAAC 60.017 38.462 6.02 6.02 43.98 2.34
1655 2050 5.007682 TGTGAAGTTAGGGCATTTCTAACC 58.992 41.667 9.51 0.00 44.44 2.85
1656 2051 4.094442 GTGAAGTTAGGGCATTTCTAACCG 59.906 45.833 9.51 0.00 44.44 4.44
1657 2052 4.020039 TGAAGTTAGGGCATTTCTAACCGA 60.020 41.667 9.51 0.00 44.44 4.69
1664 2059 1.746171 GCATTTCTAACCGACCCCCTC 60.746 57.143 0.00 0.00 0.00 4.30
1739 2134 1.743772 GCGGAGTCAATACCTGCATGT 60.744 52.381 0.00 0.00 31.92 3.21
1863 2258 0.754217 AGCCGCAGATCTACCGGTTA 60.754 55.000 25.79 0.93 43.70 2.85
1904 2300 1.906333 GGCACAAATCCGGGTGGTT 60.906 57.895 0.00 0.00 35.58 3.67
1918 2314 4.440127 GGTTAAGGACCGCGGCGA 62.440 66.667 28.58 2.44 39.00 5.54
2039 2441 7.343316 CAGAGGAGGAGAGGAGAATTTTTACTA 59.657 40.741 0.00 0.00 0.00 1.82
2044 2446 6.215636 AGGAGAGGAGAATTTTTACTAAGCCA 59.784 38.462 0.00 0.00 0.00 4.75
2299 2701 4.069304 TGGAGAGTTTAAAATCACCCACG 58.931 43.478 23.38 0.00 33.69 4.94
2326 2728 2.245806 AGGGATCAAAATAGGGCAGCTT 59.754 45.455 0.00 0.00 0.00 3.74
2381 2791 2.827921 GTGCAATTCATTCAGAAGGGGT 59.172 45.455 0.00 0.00 40.15 4.95
2446 2856 8.785329 AGGCAAACAAAGAGAAAAATAAACAA 57.215 26.923 0.00 0.00 0.00 2.83
2447 2857 9.225436 AGGCAAACAAAGAGAAAAATAAACAAA 57.775 25.926 0.00 0.00 0.00 2.83
2448 2858 9.833182 GGCAAACAAAGAGAAAAATAAACAAAA 57.167 25.926 0.00 0.00 0.00 2.44
2452 2862 9.753669 AACAAAGAGAAAAATAAACAAAAAGCG 57.246 25.926 0.00 0.00 0.00 4.68
2453 2863 8.387354 ACAAAGAGAAAAATAAACAAAAAGCGG 58.613 29.630 0.00 0.00 0.00 5.52
2454 2864 6.525121 AGAGAAAAATAAACAAAAAGCGGC 57.475 33.333 0.00 0.00 0.00 6.53
2455 2865 6.045955 AGAGAAAAATAAACAAAAAGCGGCA 58.954 32.000 1.45 0.00 0.00 5.69
2456 2866 6.705825 AGAGAAAAATAAACAAAAAGCGGCAT 59.294 30.769 1.45 0.00 0.00 4.40
2457 2867 6.657888 AGAAAAATAAACAAAAAGCGGCATG 58.342 32.000 1.45 0.00 0.00 4.06
2458 2868 5.355467 AAAATAAACAAAAAGCGGCATGG 57.645 34.783 1.45 0.00 0.00 3.66
2459 2869 1.789506 TAAACAAAAAGCGGCATGGC 58.210 45.000 9.69 9.69 0.00 4.40
2460 2870 1.220817 AAACAAAAAGCGGCATGGCG 61.221 50.000 34.70 34.70 38.18 5.69
2461 2871 2.081425 AACAAAAAGCGGCATGGCGA 62.081 50.000 41.46 0.00 38.18 5.54
2462 2872 1.153784 CAAAAAGCGGCATGGCGAT 60.154 52.632 41.46 35.15 38.18 4.58
2463 2873 1.139520 AAAAAGCGGCATGGCGATC 59.860 52.632 41.46 25.91 38.18 3.69
2464 2874 1.594194 AAAAAGCGGCATGGCGATCA 61.594 50.000 41.46 0.00 38.18 2.92
2465 2875 1.996786 AAAAGCGGCATGGCGATCAG 61.997 55.000 41.46 15.93 38.18 2.90
2466 2876 3.687321 AAGCGGCATGGCGATCAGT 62.687 57.895 41.46 20.96 38.18 3.41
2467 2877 3.643978 GCGGCATGGCGATCAGTC 61.644 66.667 41.46 20.96 0.00 3.51
2661 3071 4.627035 GCAAAGCTTTGATGAATGTTACCC 59.373 41.667 37.14 14.58 40.55 3.69
2696 3106 9.192642 TGGTGATGAATGATGAATCAACTAATT 57.807 29.630 7.05 0.00 38.56 1.40
2742 3152 8.893563 TTATCAGATTCCCTTAAACCATTGTT 57.106 30.769 0.00 0.00 35.82 2.83
2747 3157 8.364142 CAGATTCCCTTAAACCATTGTTAAACA 58.636 33.333 0.00 0.00 33.30 2.83
2785 3195 2.203280 TGGTTCACAGTTGGGCCG 60.203 61.111 0.00 0.00 0.00 6.13
2818 3228 2.507471 CCTAAGGGCTGGATGAGAAACT 59.493 50.000 0.00 0.00 0.00 2.66
2855 3265 7.939784 ACAAAGAAAACCAAGAGAACTAACT 57.060 32.000 0.00 0.00 0.00 2.24
2869 3279 3.396685 ACTAACTGAGAGAGGGATGCT 57.603 47.619 0.00 0.00 0.00 3.79
2951 3361 3.562567 AGCGACTCTTGACTAGTTGTC 57.437 47.619 0.00 0.00 45.54 3.18
2994 3404 2.020720 CTAGTCGACATGAGGAGCAGT 58.979 52.381 19.50 0.00 0.00 4.40
3130 3548 5.978814 TGAGGAGCCTACTTTTATGAAGTC 58.021 41.667 0.20 0.00 0.00 3.01
3163 3581 1.005805 CAAACCTGGATCATGGACCCA 59.994 52.381 0.00 0.00 0.00 4.51
3234 3652 9.717942 ATCTAATGATAGCCTTCTATTGTCAAC 57.282 33.333 0.00 0.00 35.72 3.18
3406 3825 6.481976 TCGGGTAATGCTAAATGTCACTATTG 59.518 38.462 0.00 0.00 0.00 1.90
3537 3956 7.898014 ATGTTTTCCCTCTTTTCACTAACTT 57.102 32.000 0.00 0.00 0.00 2.66
3614 4033 7.287696 ACAAAGTTGAGTCACTTATTTTGGGAT 59.712 33.333 12.94 0.00 35.87 3.85
3644 4063 6.637658 GGAGTACTAAATAGCGAGCTAACAAG 59.362 42.308 9.00 8.67 31.73 3.16
3664 4083 1.607148 GTCCCCTTCTTTTTGACACCG 59.393 52.381 0.00 0.00 0.00 4.94
3747 4166 1.241165 TCCAGAAGCTCGTAACGTCA 58.759 50.000 0.00 0.00 0.00 4.35
3753 4172 1.245732 AGCTCGTAACGTCAGTCCTT 58.754 50.000 0.00 0.00 0.00 3.36
3839 4258 3.737559 AAGGGGATTCTGTGCAATACA 57.262 42.857 0.00 0.00 37.78 2.29
3853 4352 6.614160 TGTGCAATACATTGTTGATCTTCAG 58.386 36.000 0.00 0.00 39.88 3.02
3865 4364 0.729116 ATCTTCAGCAATTCCGCGTG 59.271 50.000 4.92 0.00 36.85 5.34
3938 4437 1.409241 GGCAGCCTCTGGATGATTGAA 60.409 52.381 3.29 0.00 42.34 2.69
3941 4440 3.882444 CAGCCTCTGGATGATTGAAGAA 58.118 45.455 0.00 0.00 42.34 2.52
3968 4467 3.051940 TGGATAGAGAGCCAGTTCCAT 57.948 47.619 0.00 0.00 35.75 3.41
4431 4931 2.229543 TCATGCTTCCATTGTGACAAGC 59.770 45.455 3.74 1.42 41.43 4.01
4449 4949 3.261981 AGCGTATTTCCCTGGTTAGTG 57.738 47.619 0.00 0.00 0.00 2.74
4699 5199 2.026915 TGAGGCTATCTTTTCAGCTGCA 60.027 45.455 9.47 0.00 37.91 4.41
4700 5200 3.212685 GAGGCTATCTTTTCAGCTGCAT 58.787 45.455 9.47 0.00 37.91 3.96
4790 5290 1.475280 CATCAGAAGGTGGTTGCATGG 59.525 52.381 0.00 0.00 0.00 3.66
4870 5370 5.061684 TGTTCGATAAGTGAAACAGTATGCG 59.938 40.000 0.00 0.00 42.53 4.73
4879 5379 6.966021 AGTGAAACAGTATGCGTAATTGTTT 58.034 32.000 21.00 21.00 42.53 2.83
4955 5527 5.394553 CCCTGAATTCCTTAATTGTTCTGCC 60.395 44.000 2.27 0.00 35.41 4.85
5023 5595 5.301551 TGCACTTTTCATGTATTTGTGTCCT 59.698 36.000 0.00 0.00 0.00 3.85
5214 5788 4.233632 AGTGTACAGAGGTAGTACTCCC 57.766 50.000 0.00 0.00 41.76 4.30
5215 5789 3.851374 AGTGTACAGAGGTAGTACTCCCT 59.149 47.826 6.73 6.73 41.76 4.20
5216 5790 4.080413 AGTGTACAGAGGTAGTACTCCCTC 60.080 50.000 23.50 23.50 46.34 4.30
5220 5794 1.965935 GAGGTAGTACTCCCTCCGTC 58.034 60.000 21.08 0.00 41.22 4.79
5221 5795 0.550432 AGGTAGTACTCCCTCCGTCC 59.450 60.000 0.11 0.00 0.00 4.79
5222 5796 0.467106 GGTAGTACTCCCTCCGTCCC 60.467 65.000 0.00 0.00 0.00 4.46
5223 5797 0.257039 GTAGTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
5224 5798 1.002069 TAGTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
5225 5799 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
5226 5800 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
5227 5801 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
5228 5802 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
5229 5803 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
5230 5804 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
5231 5805 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
5232 5806 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
5233 5807 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
5234 5808 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
5235 5809 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
5236 5810 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
5237 5811 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
5238 5812 4.758165 TCCGTCCCAAAATTCTTGTCTTAC 59.242 41.667 0.00 0.00 0.00 2.34
5239 5813 4.517453 CCGTCCCAAAATTCTTGTCTTACA 59.483 41.667 0.00 0.00 0.00 2.41
5240 5814 5.183140 CCGTCCCAAAATTCTTGTCTTACAT 59.817 40.000 0.00 0.00 0.00 2.29
5241 5815 6.294508 CCGTCCCAAAATTCTTGTCTTACATT 60.295 38.462 0.00 0.00 0.00 2.71
5242 5816 7.094549 CCGTCCCAAAATTCTTGTCTTACATTA 60.095 37.037 0.00 0.00 0.00 1.90
5243 5817 7.962918 CGTCCCAAAATTCTTGTCTTACATTAG 59.037 37.037 0.00 0.00 0.00 1.73
5244 5818 8.793592 GTCCCAAAATTCTTGTCTTACATTAGT 58.206 33.333 0.00 0.00 0.00 2.24
5245 5819 9.010029 TCCCAAAATTCTTGTCTTACATTAGTC 57.990 33.333 0.00 0.00 0.00 2.59
5246 5820 9.014297 CCCAAAATTCTTGTCTTACATTAGTCT 57.986 33.333 0.00 0.00 0.00 3.24
5254 5828 9.053840 TCTTGTCTTACATTAGTCTAGATACGG 57.946 37.037 0.00 0.00 0.00 4.02
5255 5829 8.969260 TTGTCTTACATTAGTCTAGATACGGA 57.031 34.615 0.00 0.00 0.00 4.69
5256 5830 9.570468 TTGTCTTACATTAGTCTAGATACGGAT 57.430 33.333 0.00 0.00 0.00 4.18
5257 5831 9.000486 TGTCTTACATTAGTCTAGATACGGATG 58.000 37.037 0.00 0.00 0.00 3.51
5258 5832 9.001542 GTCTTACATTAGTCTAGATACGGATGT 57.998 37.037 0.00 5.71 35.45 3.06
5276 5850 8.792831 ACGGATGTATCTAATACTAAAACGTG 57.207 34.615 0.00 0.00 36.70 4.49
5277 5851 8.623903 ACGGATGTATCTAATACTAAAACGTGA 58.376 33.333 0.00 0.00 36.70 4.35
5278 5852 8.899776 CGGATGTATCTAATACTAAAACGTGAC 58.100 37.037 0.00 0.00 36.70 3.67
5279 5853 9.962783 GGATGTATCTAATACTAAAACGTGACT 57.037 33.333 0.00 0.00 36.70 3.41
5289 5863 6.963049 ACTAAAACGTGACTTGATACATCC 57.037 37.500 0.00 0.00 0.00 3.51
5290 5864 4.921470 AAAACGTGACTTGATACATCCG 57.079 40.909 0.00 0.00 0.00 4.18
5291 5865 3.587797 AACGTGACTTGATACATCCGT 57.412 42.857 0.00 0.00 0.00 4.69
5292 5866 4.707030 AACGTGACTTGATACATCCGTA 57.293 40.909 0.00 0.00 0.00 4.02
5293 5867 4.913335 ACGTGACTTGATACATCCGTAT 57.087 40.909 0.00 0.00 41.16 3.06
5294 5868 5.258456 ACGTGACTTGATACATCCGTATT 57.742 39.130 0.00 0.00 38.48 1.89
5295 5869 5.657474 ACGTGACTTGATACATCCGTATTT 58.343 37.500 0.00 0.00 38.48 1.40
5296 5870 6.798482 ACGTGACTTGATACATCCGTATTTA 58.202 36.000 0.00 0.00 38.48 1.40
5297 5871 6.916387 ACGTGACTTGATACATCCGTATTTAG 59.084 38.462 0.00 0.00 38.48 1.85
5298 5872 7.136772 CGTGACTTGATACATCCGTATTTAGA 58.863 38.462 0.00 0.00 38.48 2.10
5299 5873 7.113124 CGTGACTTGATACATCCGTATTTAGAC 59.887 40.741 0.00 0.00 38.48 2.59
5300 5874 7.919091 GTGACTTGATACATCCGTATTTAGACA 59.081 37.037 0.00 0.00 38.48 3.41
5301 5875 8.471609 TGACTTGATACATCCGTATTTAGACAA 58.528 33.333 0.00 0.00 38.48 3.18
5302 5876 9.309516 GACTTGATACATCCGTATTTAGACAAA 57.690 33.333 0.00 0.00 38.48 2.83
5303 5877 9.832445 ACTTGATACATCCGTATTTAGACAAAT 57.168 29.630 0.00 0.00 38.48 2.32
5310 5884 9.530633 ACATCCGTATTTAGACAAATCTAAGAC 57.469 33.333 0.00 0.83 45.93 3.01
5311 5885 9.529325 CATCCGTATTTAGACAAATCTAAGACA 57.471 33.333 9.81 0.00 45.93 3.41
5313 5887 9.582431 TCCGTATTTAGACAAATCTAAGACAAG 57.418 33.333 9.81 3.88 45.93 3.16
5314 5888 9.582431 CCGTATTTAGACAAATCTAAGACAAGA 57.418 33.333 9.81 0.00 45.93 3.02
5322 5896 8.579863 AGACAAATCTAAGACAAGAATTTTGGG 58.420 33.333 0.00 0.00 33.04 4.12
5323 5897 8.477419 ACAAATCTAAGACAAGAATTTTGGGA 57.523 30.769 0.00 0.00 33.04 4.37
5324 5898 8.360390 ACAAATCTAAGACAAGAATTTTGGGAC 58.640 33.333 0.00 0.00 33.04 4.46
5325 5899 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
5326 5900 5.001232 TCTAAGACAAGAATTTTGGGACGG 58.999 41.667 0.00 0.00 0.00 4.79
5327 5901 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
5328 5902 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
5329 5903 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
5330 5904 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
5337 5911 0.613853 TTGGGACGGAGGGAGTACTG 60.614 60.000 0.00 0.00 0.00 2.74
5391 5965 5.366482 TGTTTGGCAGCCTACTTATATCA 57.634 39.130 14.15 0.00 0.00 2.15
5564 6139 8.248904 AGCTATTTGTTAGAGAGATGATGAGT 57.751 34.615 0.00 0.00 0.00 3.41
5621 6196 5.248640 TCAAGAGCTTTGGAGGTTATTGAG 58.751 41.667 8.23 0.00 35.90 3.02
5735 6310 6.303839 TCTAGGGCTTAATGTTTTCACTTGT 58.696 36.000 0.00 0.00 0.00 3.16
5749 6324 9.137459 TGTTTTCACTTGTCCATAGGAAAATAA 57.863 29.630 0.00 0.00 36.84 1.40
6033 6608 7.175467 TGCAGATCAATAATTATGCACTTAGGG 59.825 37.037 5.31 0.00 36.19 3.53
6133 6708 3.447742 CTGATGTCTGCTAATACGCACA 58.552 45.455 0.00 0.00 35.74 4.57
6134 6709 4.053983 CTGATGTCTGCTAATACGCACAT 58.946 43.478 0.00 0.00 35.74 3.21
6135 6710 4.051237 TGATGTCTGCTAATACGCACATC 58.949 43.478 8.54 8.54 40.74 3.06
6136 6711 2.459934 TGTCTGCTAATACGCACATCG 58.540 47.619 0.00 0.00 45.38 3.84
6137 6712 2.098443 TGTCTGCTAATACGCACATCGA 59.902 45.455 0.00 0.00 41.67 3.59
6138 6713 2.721603 GTCTGCTAATACGCACATCGAG 59.278 50.000 0.00 0.00 41.67 4.04
6139 6714 2.054363 CTGCTAATACGCACATCGAGG 58.946 52.381 0.00 0.00 41.67 4.63
6140 6715 1.679153 TGCTAATACGCACATCGAGGA 59.321 47.619 3.06 0.00 41.67 3.71
6141 6716 2.287608 TGCTAATACGCACATCGAGGAG 60.288 50.000 3.06 0.00 41.67 3.69
6142 6717 2.922758 GCTAATACGCACATCGAGGAGG 60.923 54.545 3.06 0.00 41.67 4.30
6143 6718 1.399714 AATACGCACATCGAGGAGGA 58.600 50.000 3.06 0.00 41.67 3.71
6144 6719 1.621992 ATACGCACATCGAGGAGGAT 58.378 50.000 3.06 0.00 41.67 3.24
6145 6720 2.265589 TACGCACATCGAGGAGGATA 57.734 50.000 3.06 0.00 41.67 2.59
6146 6721 1.621992 ACGCACATCGAGGAGGATAT 58.378 50.000 3.06 0.00 41.67 1.63
6147 6722 1.542030 ACGCACATCGAGGAGGATATC 59.458 52.381 3.06 0.00 41.67 1.63
6148 6723 3.718426 ACGCACATCGAGGAGGATATCC 61.718 54.545 14.41 14.41 44.66 2.59
6168 6743 3.449018 TCCCTCTCACACTAGAATTCTGC 59.551 47.826 18.47 0.00 0.00 4.26
6172 6747 3.196469 TCTCACACTAGAATTCTGCCCAG 59.804 47.826 18.47 9.64 0.00 4.45
6215 6790 4.164843 TCAACTATTGGCCCTGGTATTC 57.835 45.455 0.00 0.00 0.00 1.75
6224 6799 2.355412 GGCCCTGGTATTCGTACACTTT 60.355 50.000 0.00 0.00 0.00 2.66
6226 6801 3.528532 CCCTGGTATTCGTACACTTTCC 58.471 50.000 0.00 0.00 0.00 3.13
6250 6825 3.511477 AGTCCCGAGCTCATATGGTATT 58.489 45.455 15.40 0.00 0.00 1.89
6262 6837 7.769044 AGCTCATATGGTATTCGTACACTTTTT 59.231 33.333 2.13 0.00 0.00 1.94
6269 6844 3.974871 TTCGTACACTTTTTGAAGCCC 57.025 42.857 0.00 0.00 0.00 5.19
6291 6866 5.179368 CCCCAAGCTCATATGTTTACGTATG 59.821 44.000 13.49 13.49 43.67 2.39
6302 6877 9.528847 CATATGTTTACGTATGCATCACATTAC 57.471 33.333 0.19 0.00 40.38 1.89
6327 6902 4.313020 AAAGACCTGCCATCTGAGAAAT 57.687 40.909 0.00 0.00 0.00 2.17
6341 6916 5.297547 TCTGAGAAATGTAAACAGCGAAGT 58.702 37.500 0.00 0.00 0.00 3.01
6435 7010 1.269051 GCGGTGCCTATTGGTTAATGC 60.269 52.381 0.00 0.00 35.27 3.56
6437 7012 2.622942 CGGTGCCTATTGGTTAATGCAT 59.377 45.455 0.00 0.00 30.80 3.96
6562 7137 0.103390 TCCTTTGCTGTGACGTCGAA 59.897 50.000 11.62 0.00 0.00 3.71
6574 7149 4.082408 TGTGACGTCGAATCTTTACAGGAT 60.082 41.667 11.62 0.00 0.00 3.24
6620 7195 4.833478 ATGAGCAGAAATAGACCTGTGT 57.167 40.909 0.00 0.00 33.19 3.72
6621 7196 4.623932 TGAGCAGAAATAGACCTGTGTT 57.376 40.909 0.00 0.00 33.19 3.32
6622 7197 4.318332 TGAGCAGAAATAGACCTGTGTTG 58.682 43.478 0.00 0.00 33.19 3.33
6623 7198 4.040339 TGAGCAGAAATAGACCTGTGTTGA 59.960 41.667 0.00 0.00 33.19 3.18
6624 7199 5.171339 AGCAGAAATAGACCTGTGTTGAT 57.829 39.130 0.00 0.00 33.19 2.57
6625 7200 5.181748 AGCAGAAATAGACCTGTGTTGATC 58.818 41.667 0.00 0.00 33.19 2.92
6626 7201 4.937620 GCAGAAATAGACCTGTGTTGATCA 59.062 41.667 0.00 0.00 33.19 2.92
6627 7202 5.587844 GCAGAAATAGACCTGTGTTGATCAT 59.412 40.000 0.00 0.00 33.19 2.45
6637 7212 3.934579 CTGTGTTGATCATTCGTCCATGA 59.065 43.478 0.00 0.00 37.58 3.07
6793 7370 2.766970 TTTGCTACCACTGTTTTCGC 57.233 45.000 0.00 0.00 0.00 4.70
6853 7432 1.175983 TTTGGATGTGAACCACGGGC 61.176 55.000 0.00 0.00 37.14 6.13
6911 7490 3.731728 GGGGATGGGCAGCACAGA 61.732 66.667 2.40 0.00 0.00 3.41
6937 7516 2.811317 GGAGCTGCAACCGACGAG 60.811 66.667 0.00 0.00 0.00 4.18
6938 7517 3.482783 GAGCTGCAACCGACGAGC 61.483 66.667 1.02 0.00 0.00 5.03
6939 7518 4.299547 AGCTGCAACCGACGAGCA 62.300 61.111 1.02 8.43 36.72 4.26
7091 7724 1.454847 TGCTTTGTTTCCCGCTGGT 60.455 52.632 0.00 0.00 0.00 4.00
7171 7804 4.683334 GGCAACACTTGTCGCGGC 62.683 66.667 2.29 2.29 0.00 6.53
7177 7810 4.143333 ACTTGTCGCGGCGCCTAT 62.143 61.111 27.87 2.86 0.00 2.57
7178 7811 3.330853 CTTGTCGCGGCGCCTATC 61.331 66.667 27.87 12.46 0.00 2.08
7179 7812 4.136511 TTGTCGCGGCGCCTATCA 62.137 61.111 27.87 16.61 0.00 2.15
7180 7813 4.865761 TGTCGCGGCGCCTATCAC 62.866 66.667 27.87 15.65 0.00 3.06
7181 7814 4.570663 GTCGCGGCGCCTATCACT 62.571 66.667 27.87 0.00 0.00 3.41
7182 7815 4.569023 TCGCGGCGCCTATCACTG 62.569 66.667 27.87 9.72 0.00 3.66
7194 7827 5.685075 GCGCCTATCACTGCCCTTAATATAT 60.685 44.000 0.00 0.00 0.00 0.86
7195 7828 6.349300 CGCCTATCACTGCCCTTAATATATT 58.651 40.000 2.97 2.97 0.00 1.28
7196 7829 6.258727 CGCCTATCACTGCCCTTAATATATTG 59.741 42.308 8.28 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 68 5.163141 TGTTGGGGTGAAACTTGATAAGAGA 60.163 40.000 0.00 0.00 36.74 3.10
265 266 3.181445 TGCTATCACACCCTGAGTTTTGT 60.181 43.478 0.00 0.00 30.20 2.83
329 330 3.126858 CGTTTGGTCCCATTAGACACATG 59.873 47.826 0.00 0.00 38.59 3.21
348 349 4.022464 TCTCAAAATTTTGCGTCACGTT 57.978 36.364 23.36 0.00 38.05 3.99
410 411 2.158900 AGGCTTCATCACGGTATTCAGG 60.159 50.000 0.00 0.00 0.00 3.86
414 415 2.769663 TGGTAGGCTTCATCACGGTATT 59.230 45.455 0.00 0.00 0.00 1.89
422 423 8.078596 GTGATGAAATTATTGGTAGGCTTCATC 58.921 37.037 12.67 12.67 43.90 2.92
428 429 6.204688 TCGATGTGATGAAATTATTGGTAGGC 59.795 38.462 0.00 0.00 0.00 3.93
462 463 8.646900 TGTTTAGGAAATAGGAAATTTTGTGCT 58.353 29.630 0.00 0.00 0.00 4.40
484 491 2.817844 GGTTTGCGGGAACTAGATGTTT 59.182 45.455 0.00 0.00 39.30 2.83
498 505 1.094785 ATCGATCAAAGGGGTTTGCG 58.905 50.000 0.00 0.00 32.23 4.85
504 549 3.507411 TCCTAGGTATCGATCAAAGGGG 58.493 50.000 9.08 0.00 0.00 4.79
549 595 0.469917 AGTGGATAGGATGGCGGTTG 59.530 55.000 0.00 0.00 0.00 3.77
564 610 4.640647 GCCTGTTTAGGGATTTCTTAGTGG 59.359 45.833 0.00 0.00 44.75 4.00
648 694 4.217550 TCACCGCCCTTGAGAAAAATTTAG 59.782 41.667 0.00 0.00 0.00 1.85
657 703 1.073125 TGAAATTCACCGCCCTTGAGA 59.927 47.619 0.00 0.00 0.00 3.27
728 774 1.198094 TCAGGGCGGTGGATTTCAGA 61.198 55.000 0.00 0.00 0.00 3.27
811 858 4.032703 AGTGCTAGCTTTGTTGTTGTTG 57.967 40.909 17.23 0.00 0.00 3.33
859 906 2.737376 GACGGTCGTTGGGTCTGC 60.737 66.667 0.00 0.00 0.00 4.26
875 1265 2.099427 GGTTTGGTTTGGTGCTTTACGA 59.901 45.455 0.00 0.00 0.00 3.43
876 1266 2.159226 TGGTTTGGTTTGGTGCTTTACG 60.159 45.455 0.00 0.00 0.00 3.18
1193 1588 3.157949 GGGGAAGGCGGAGAGGAG 61.158 72.222 0.00 0.00 0.00 3.69
1345 1740 0.392193 ATGAGACAAAGCAGGGCGAG 60.392 55.000 0.00 0.00 0.00 5.03
1346 1741 0.036732 AATGAGACAAAGCAGGGCGA 59.963 50.000 0.00 0.00 0.00 5.54
1353 1748 7.090173 TGGCAACTAAATTAATGAGACAAAGC 58.910 34.615 4.96 0.00 37.61 3.51
1354 1749 9.132521 CTTGGCAACTAAATTAATGAGACAAAG 57.867 33.333 0.00 1.21 37.61 2.77
1389 1784 3.004944 TCCAACGCCAATTCCTACAAAAC 59.995 43.478 0.00 0.00 0.00 2.43
1483 1878 9.780186 ACAATACTAAGATTAGCCCTATTTCAC 57.220 33.333 0.00 0.00 34.09 3.18
1620 2015 4.887655 CCTAACTTCACAACAAAAGGACCT 59.112 41.667 0.00 0.00 0.00 3.85
1653 2048 0.255033 GCTATTTTGAGGGGGTCGGT 59.745 55.000 0.00 0.00 0.00 4.69
1654 2049 0.814010 CGCTATTTTGAGGGGGTCGG 60.814 60.000 0.00 0.00 0.00 4.79
1655 2050 0.814010 CCGCTATTTTGAGGGGGTCG 60.814 60.000 0.00 0.00 44.01 4.79
1656 2051 0.544697 TCCGCTATTTTGAGGGGGTC 59.455 55.000 6.67 0.00 46.89 4.46
1657 2052 0.546598 CTCCGCTATTTTGAGGGGGT 59.453 55.000 6.67 0.00 46.89 4.95
1712 2107 2.091775 AGGTATTGACTCCGCCTCTAGT 60.092 50.000 0.00 0.00 0.00 2.57
1757 2152 3.839046 TACCGGACCACACAGCCCT 62.839 63.158 9.46 0.00 0.00 5.19
1841 2236 2.818132 GGTAGATCTGCGGCTGCT 59.182 61.111 20.27 0.00 43.34 4.24
1881 2276 1.000896 CCCGGATTTGTGCCTCCTT 60.001 57.895 0.73 0.00 0.00 3.36
1904 2300 4.807039 GCTTCGCCGCGGTCCTTA 62.807 66.667 28.70 7.20 0.00 2.69
1981 2383 4.585526 CTCCCGCGCCGCATCTAA 62.586 66.667 10.75 0.00 0.00 2.10
2124 2526 3.972276 GCAAAGGTCCGCCGCAAA 61.972 61.111 0.00 0.00 40.50 3.68
2299 2701 5.385198 TGCCCTATTTTGATCCCTATTGAC 58.615 41.667 0.00 0.00 0.00 3.18
2341 2751 3.390135 CACAGTTCTCCTGCGTTTCTTA 58.610 45.455 0.00 0.00 45.68 2.10
2349 2759 1.881973 TGAATTGCACAGTTCTCCTGC 59.118 47.619 7.31 0.00 45.68 4.85
2358 2768 3.119245 CCCCTTCTGAATGAATTGCACAG 60.119 47.826 0.00 0.00 33.71 3.66
2360 2770 2.827921 ACCCCTTCTGAATGAATTGCAC 59.172 45.455 0.00 0.00 33.71 4.57
2361 2771 2.827322 CACCCCTTCTGAATGAATTGCA 59.173 45.455 0.00 0.00 33.71 4.08
2446 2856 1.996786 CTGATCGCCATGCCGCTTTT 61.997 55.000 0.00 0.00 0.00 2.27
2447 2857 2.438254 TGATCGCCATGCCGCTTT 60.438 55.556 0.00 0.00 0.00 3.51
2448 2858 2.898840 CTGATCGCCATGCCGCTT 60.899 61.111 0.00 0.00 0.00 4.68
2449 2859 4.166888 ACTGATCGCCATGCCGCT 62.167 61.111 0.00 0.00 0.00 5.52
2450 2860 3.643978 GACTGATCGCCATGCCGC 61.644 66.667 0.00 0.00 0.00 6.53
2451 2861 3.333189 CGACTGATCGCCATGCCG 61.333 66.667 0.00 0.00 42.43 5.69
2460 2870 3.717400 TTGATCTAGCCACGACTGATC 57.283 47.619 0.00 0.00 35.44 2.92
2461 2871 4.437239 CTTTTGATCTAGCCACGACTGAT 58.563 43.478 0.00 0.00 0.00 2.90
2462 2872 3.849911 CTTTTGATCTAGCCACGACTGA 58.150 45.455 0.00 0.00 0.00 3.41
2463 2873 2.349886 GCTTTTGATCTAGCCACGACTG 59.650 50.000 0.00 0.00 0.00 3.51
2464 2874 2.622436 GCTTTTGATCTAGCCACGACT 58.378 47.619 0.00 0.00 0.00 4.18
2465 2875 1.324736 CGCTTTTGATCTAGCCACGAC 59.675 52.381 8.71 0.00 33.86 4.34
2466 2876 1.640428 CGCTTTTGATCTAGCCACGA 58.360 50.000 8.71 0.00 33.86 4.35
2467 2877 0.652592 CCGCTTTTGATCTAGCCACG 59.347 55.000 8.71 0.00 33.86 4.94
2468 2878 0.378610 GCCGCTTTTGATCTAGCCAC 59.621 55.000 8.71 0.26 33.86 5.01
2469 2879 0.035534 TGCCGCTTTTGATCTAGCCA 60.036 50.000 8.71 1.63 33.86 4.75
2470 2880 1.002033 CATGCCGCTTTTGATCTAGCC 60.002 52.381 8.71 0.00 33.86 3.93
2661 3071 7.250445 TCATCATTCATCACCAAATAAGTCG 57.750 36.000 0.00 0.00 0.00 4.18
2742 3152 6.688637 TCTCTCGACCGAAATAGATGTTTA 57.311 37.500 0.00 0.00 0.00 2.01
2747 3157 4.457603 CCAGATCTCTCGACCGAAATAGAT 59.542 45.833 0.00 9.74 0.00 1.98
2782 3192 3.253432 CCCTTAGGAAATAAGATTGCGGC 59.747 47.826 0.00 0.00 43.17 6.53
2785 3195 4.279420 CCAGCCCTTAGGAAATAAGATTGC 59.721 45.833 0.00 0.00 43.17 3.56
2818 3228 6.264292 TGGTTTTCTTTGTTCATTAGCAGCTA 59.736 34.615 0.00 0.00 0.00 3.32
2855 3265 1.761198 CATGACAGCATCCCTCTCTCA 59.239 52.381 0.00 0.00 30.68 3.27
2869 3279 1.202568 GGCATCAGATCCGACATGACA 60.203 52.381 0.00 0.00 0.00 3.58
2951 3361 4.271533 GTCGACCATGAGTCTAGACTAGTG 59.728 50.000 25.23 23.06 43.91 2.74
2994 3404 1.303561 CCTGGTTGCTGGCTTGCTA 60.304 57.895 4.89 0.00 0.00 3.49
3130 3548 2.350522 CAGGTTTGGAGGAGATTCACG 58.649 52.381 0.00 0.00 0.00 4.35
3163 3581 3.940852 TGATACATGACTCGCAATTTGCT 59.059 39.130 18.57 0.47 42.25 3.91
3234 3652 5.188751 ACATCCTGAAAGAGAAACCTCCTAG 59.811 44.000 0.00 0.00 34.07 3.02
3383 3801 7.568199 ACAATAGTGACATTTAGCATTACCC 57.432 36.000 0.00 0.00 0.00 3.69
3454 3873 5.376854 ACGAAGAAATGACAAATCCCAAG 57.623 39.130 0.00 0.00 0.00 3.61
3537 3956 0.178926 TTTGGGACGGAGGGAGTACA 60.179 55.000 0.00 0.00 0.00 2.90
3614 4033 4.142790 CTCGCTATTTAGTACTCCCTCCA 58.857 47.826 0.00 0.00 0.00 3.86
3644 4063 1.607148 CGGTGTCAAAAAGAAGGGGAC 59.393 52.381 0.00 0.00 0.00 4.46
3664 4083 4.099419 ACAACCACTTTGATTGGAAAGTCC 59.901 41.667 0.00 0.00 42.96 3.85
3747 4166 7.225011 GCAGTAAATTAGGGCTTATAAGGACT 58.775 38.462 14.28 1.24 0.00 3.85
3753 4172 7.388638 AAGAGGCAGTAAATTAGGGCTTATA 57.611 36.000 2.96 0.00 36.18 0.98
3803 4222 3.003480 CCCCTTTTTCTAGAGCGAGTTG 58.997 50.000 0.00 0.00 0.00 3.16
3839 4258 4.676196 GCGGAATTGCTGAAGATCAACAAT 60.676 41.667 3.76 3.76 42.86 2.71
3853 4352 4.560819 TGATTATTTTTCACGCGGAATTGC 59.439 37.500 12.47 0.00 34.91 3.56
3938 4437 6.786959 ACTGGCTCTCTATCCATAGAATTTCT 59.213 38.462 4.03 4.03 38.80 2.52
3941 4440 6.013812 GGAACTGGCTCTCTATCCATAGAATT 60.014 42.308 0.00 0.00 38.80 2.17
3989 4488 0.039527 GAAAGGCACGCAAACGGAAT 60.040 50.000 0.00 0.00 46.04 3.01
4117 4616 9.533831 ACTAAAATAATGGAATGACAGTTTCCT 57.466 29.630 8.85 0.00 42.63 3.36
4400 4900 1.375098 GGAAGCATGAGAGCAGGTGC 61.375 60.000 0.00 0.00 42.49 5.01
4431 4931 5.952526 AAAACACTAACCAGGGAAATACG 57.047 39.130 0.00 0.00 0.00 3.06
4460 4960 6.953520 TCCAATACAAGATTCCCAACTTCATT 59.046 34.615 0.00 0.00 0.00 2.57
4699 5199 4.018050 AGGCCATTCTCAGGTTCACTAAAT 60.018 41.667 5.01 0.00 0.00 1.40
4700 5200 3.330701 AGGCCATTCTCAGGTTCACTAAA 59.669 43.478 5.01 0.00 0.00 1.85
4790 5290 5.961843 CGATGAATTGTGCTTGAATGTCTAC 59.038 40.000 0.00 0.00 0.00 2.59
4870 5370 7.185453 TGCAAAACATCAAGCAAAACAATTAC 58.815 30.769 0.00 0.00 33.48 1.89
4879 5379 4.035324 CCATTGTTGCAAAACATCAAGCAA 59.965 37.500 0.00 0.00 43.90 3.91
4955 5527 2.903798 ACCATTGTTGCAAAACACCAG 58.096 42.857 0.00 0.00 31.49 4.00
5068 5640 9.295825 AGTCTATTTCAAATAACCACAATGTGA 57.704 29.630 15.91 0.00 35.23 3.58
5206 5780 0.115745 TTTGGGACGGAGGGAGTACT 59.884 55.000 0.00 0.00 0.00 2.73
5207 5781 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
5208 5782 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
5209 5783 1.004394 GAATTTTGGGACGGAGGGAGT 59.996 52.381 0.00 0.00 0.00 3.85
5210 5784 1.282157 AGAATTTTGGGACGGAGGGAG 59.718 52.381 0.00 0.00 0.00 4.30
5211 5785 1.368374 AGAATTTTGGGACGGAGGGA 58.632 50.000 0.00 0.00 0.00 4.20
5212 5786 1.818674 CAAGAATTTTGGGACGGAGGG 59.181 52.381 0.00 0.00 0.00 4.30
5213 5787 2.488153 GACAAGAATTTTGGGACGGAGG 59.512 50.000 0.00 0.00 0.00 4.30
5214 5788 3.412386 AGACAAGAATTTTGGGACGGAG 58.588 45.455 0.00 0.00 0.00 4.63
5215 5789 3.502123 AGACAAGAATTTTGGGACGGA 57.498 42.857 0.00 0.00 0.00 4.69
5216 5790 4.517453 TGTAAGACAAGAATTTTGGGACGG 59.483 41.667 0.00 0.00 0.00 4.79
5217 5791 5.682943 TGTAAGACAAGAATTTTGGGACG 57.317 39.130 5.68 0.00 0.00 4.79
5218 5792 8.793592 ACTAATGTAAGACAAGAATTTTGGGAC 58.206 33.333 5.68 0.00 0.00 4.46
5219 5793 8.934023 ACTAATGTAAGACAAGAATTTTGGGA 57.066 30.769 5.68 0.00 0.00 4.37
5220 5794 9.014297 AGACTAATGTAAGACAAGAATTTTGGG 57.986 33.333 5.68 0.00 0.00 4.12
5228 5802 9.053840 CCGTATCTAGACTAATGTAAGACAAGA 57.946 37.037 0.00 0.00 0.00 3.02
5229 5803 9.053840 TCCGTATCTAGACTAATGTAAGACAAG 57.946 37.037 0.00 0.00 0.00 3.16
5230 5804 8.969260 TCCGTATCTAGACTAATGTAAGACAA 57.031 34.615 0.00 0.00 0.00 3.18
5231 5805 9.000486 CATCCGTATCTAGACTAATGTAAGACA 58.000 37.037 0.00 0.00 0.00 3.41
5232 5806 9.001542 ACATCCGTATCTAGACTAATGTAAGAC 57.998 37.037 0.00 0.00 0.00 3.01
5250 5824 9.882996 CACGTTTTAGTATTAGATACATCCGTA 57.117 33.333 0.00 0.00 38.21 4.02
5251 5825 8.623903 TCACGTTTTAGTATTAGATACATCCGT 58.376 33.333 0.00 0.00 38.21 4.69
5252 5826 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
5253 5827 9.962783 AGTCACGTTTTAGTATTAGATACATCC 57.037 33.333 0.00 0.00 38.21 3.51
5263 5837 9.095065 GGATGTATCAAGTCACGTTTTAGTATT 57.905 33.333 0.00 0.00 0.00 1.89
5264 5838 7.434307 CGGATGTATCAAGTCACGTTTTAGTAT 59.566 37.037 0.00 0.00 0.00 2.12
5265 5839 6.748658 CGGATGTATCAAGTCACGTTTTAGTA 59.251 38.462 0.00 0.00 0.00 1.82
5266 5840 5.575606 CGGATGTATCAAGTCACGTTTTAGT 59.424 40.000 0.00 0.00 0.00 2.24
5267 5841 5.575606 ACGGATGTATCAAGTCACGTTTTAG 59.424 40.000 0.00 0.00 0.00 1.85
5268 5842 5.472148 ACGGATGTATCAAGTCACGTTTTA 58.528 37.500 0.00 0.00 0.00 1.52
5269 5843 4.312443 ACGGATGTATCAAGTCACGTTTT 58.688 39.130 0.00 0.00 0.00 2.43
5270 5844 3.921677 ACGGATGTATCAAGTCACGTTT 58.078 40.909 0.00 0.00 0.00 3.60
5271 5845 3.587797 ACGGATGTATCAAGTCACGTT 57.412 42.857 0.00 0.00 0.00 3.99
5272 5846 4.913335 ATACGGATGTATCAAGTCACGT 57.087 40.909 0.00 0.00 36.56 4.49
5273 5847 7.113124 GTCTAAATACGGATGTATCAAGTCACG 59.887 40.741 0.00 0.00 40.42 4.35
5274 5848 7.919091 TGTCTAAATACGGATGTATCAAGTCAC 59.081 37.037 0.00 0.00 40.42 3.67
5275 5849 8.002984 TGTCTAAATACGGATGTATCAAGTCA 57.997 34.615 0.00 0.00 40.42 3.41
5276 5850 8.867112 TTGTCTAAATACGGATGTATCAAGTC 57.133 34.615 0.00 0.00 40.42 3.01
5277 5851 9.832445 ATTTGTCTAAATACGGATGTATCAAGT 57.168 29.630 0.00 0.00 40.42 3.16
5284 5858 9.530633 GTCTTAGATTTGTCTAAATACGGATGT 57.469 33.333 0.26 0.00 36.66 3.06
5285 5859 9.529325 TGTCTTAGATTTGTCTAAATACGGATG 57.471 33.333 0.26 0.00 36.66 3.51
5287 5861 9.582431 CTTGTCTTAGATTTGTCTAAATACGGA 57.418 33.333 0.26 0.00 36.66 4.69
5288 5862 9.582431 TCTTGTCTTAGATTTGTCTAAATACGG 57.418 33.333 0.26 0.99 36.66 4.02
5296 5870 8.579863 CCCAAAATTCTTGTCTTAGATTTGTCT 58.420 33.333 0.00 0.00 28.79 3.41
5297 5871 8.576442 TCCCAAAATTCTTGTCTTAGATTTGTC 58.424 33.333 0.00 0.00 28.79 3.18
5298 5872 8.360390 GTCCCAAAATTCTTGTCTTAGATTTGT 58.640 33.333 0.00 0.00 28.79 2.83
5299 5873 7.538678 CGTCCCAAAATTCTTGTCTTAGATTTG 59.461 37.037 0.00 0.00 29.84 2.32
5300 5874 7.309194 CCGTCCCAAAATTCTTGTCTTAGATTT 60.309 37.037 0.00 0.00 0.00 2.17
5301 5875 6.151144 CCGTCCCAAAATTCTTGTCTTAGATT 59.849 38.462 0.00 0.00 0.00 2.40
5302 5876 5.648092 CCGTCCCAAAATTCTTGTCTTAGAT 59.352 40.000 0.00 0.00 0.00 1.98
5303 5877 5.001232 CCGTCCCAAAATTCTTGTCTTAGA 58.999 41.667 0.00 0.00 0.00 2.10
5304 5878 5.001232 TCCGTCCCAAAATTCTTGTCTTAG 58.999 41.667 0.00 0.00 0.00 2.18
5305 5879 4.975631 TCCGTCCCAAAATTCTTGTCTTA 58.024 39.130 0.00 0.00 0.00 2.10
5306 5880 3.821033 CTCCGTCCCAAAATTCTTGTCTT 59.179 43.478 0.00 0.00 0.00 3.01
5307 5881 3.412386 CTCCGTCCCAAAATTCTTGTCT 58.588 45.455 0.00 0.00 0.00 3.41
5308 5882 2.488153 CCTCCGTCCCAAAATTCTTGTC 59.512 50.000 0.00 0.00 0.00 3.18
5309 5883 2.514803 CCTCCGTCCCAAAATTCTTGT 58.485 47.619 0.00 0.00 0.00 3.16
5310 5884 1.818674 CCCTCCGTCCCAAAATTCTTG 59.181 52.381 0.00 0.00 0.00 3.02
5311 5885 1.708551 TCCCTCCGTCCCAAAATTCTT 59.291 47.619 0.00 0.00 0.00 2.52
5312 5886 1.282157 CTCCCTCCGTCCCAAAATTCT 59.718 52.381 0.00 0.00 0.00 2.40
5313 5887 1.004394 ACTCCCTCCGTCCCAAAATTC 59.996 52.381 0.00 0.00 0.00 2.17
5314 5888 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
5315 5889 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
5316 5890 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
5317 5891 0.115745 AGTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
5318 5892 0.613853 CAGTACTCCCTCCGTCCCAA 60.614 60.000 0.00 0.00 0.00 4.12
5319 5893 1.000019 CAGTACTCCCTCCGTCCCA 60.000 63.158 0.00 0.00 0.00 4.37
5320 5894 1.757340 CCAGTACTCCCTCCGTCCC 60.757 68.421 0.00 0.00 0.00 4.46
5321 5895 0.614134 AACCAGTACTCCCTCCGTCC 60.614 60.000 0.00 0.00 0.00 4.79
5322 5896 2.134789 TAACCAGTACTCCCTCCGTC 57.865 55.000 0.00 0.00 0.00 4.79
5323 5897 2.454538 CTTAACCAGTACTCCCTCCGT 58.545 52.381 0.00 0.00 0.00 4.69
5324 5898 1.136500 GCTTAACCAGTACTCCCTCCG 59.864 57.143 0.00 0.00 0.00 4.63
5325 5899 2.468915 AGCTTAACCAGTACTCCCTCC 58.531 52.381 0.00 0.00 0.00 4.30
5326 5900 4.554960 AAAGCTTAACCAGTACTCCCTC 57.445 45.455 0.00 0.00 0.00 4.30
5327 5901 4.995624 AAAAGCTTAACCAGTACTCCCT 57.004 40.909 0.00 0.00 0.00 4.20
5328 5902 8.045507 AGTAATAAAAGCTTAACCAGTACTCCC 58.954 37.037 0.00 0.00 0.00 4.30
5329 5903 9.445878 AAGTAATAAAAGCTTAACCAGTACTCC 57.554 33.333 0.00 0.00 0.00 3.85
5337 5911 7.368480 TCGTGGAAGTAATAAAAGCTTAACC 57.632 36.000 0.00 0.00 0.00 2.85
5564 6139 3.628942 GTGCATCATTTATGTCAGAGGCA 59.371 43.478 0.00 0.00 44.22 4.75
5621 6196 0.465705 TCCGCTCCATGATGGACTTC 59.534 55.000 10.75 1.97 42.67 3.01
5735 6310 8.723365 TCCTTTAGCATCTTATTTTCCTATGGA 58.277 33.333 0.00 0.00 0.00 3.41
5822 6397 1.002900 TCAAACTCTTTTTGGCGCTCG 60.003 47.619 7.64 0.00 0.00 5.03
6033 6608 0.107993 TGAGCCTGCTGTAGATGCAC 60.108 55.000 0.00 0.00 36.37 4.57
6141 6716 6.723977 AGAATTCTAGTGTGAGAGGGATATCC 59.276 42.308 13.87 13.87 0.00 2.59
6142 6717 7.601856 CAGAATTCTAGTGTGAGAGGGATATC 58.398 42.308 7.86 0.00 0.00 1.63
6143 6718 6.014669 GCAGAATTCTAGTGTGAGAGGGATAT 60.015 42.308 7.86 0.00 0.00 1.63
6144 6719 5.303078 GCAGAATTCTAGTGTGAGAGGGATA 59.697 44.000 7.86 0.00 0.00 2.59
6145 6720 4.100808 GCAGAATTCTAGTGTGAGAGGGAT 59.899 45.833 7.86 0.00 0.00 3.85
6146 6721 3.449018 GCAGAATTCTAGTGTGAGAGGGA 59.551 47.826 7.86 0.00 0.00 4.20
6147 6722 3.431486 GGCAGAATTCTAGTGTGAGAGGG 60.431 52.174 7.86 0.00 0.00 4.30
6148 6723 3.431486 GGGCAGAATTCTAGTGTGAGAGG 60.431 52.174 7.86 0.00 0.00 3.69
6149 6724 3.196469 TGGGCAGAATTCTAGTGTGAGAG 59.804 47.826 7.86 0.00 0.00 3.20
6150 6725 3.173151 TGGGCAGAATTCTAGTGTGAGA 58.827 45.455 7.86 0.00 0.00 3.27
6151 6726 3.529533 CTGGGCAGAATTCTAGTGTGAG 58.470 50.000 7.86 0.00 0.00 3.51
6152 6727 2.237143 CCTGGGCAGAATTCTAGTGTGA 59.763 50.000 7.86 0.00 0.00 3.58
6153 6728 2.026822 ACCTGGGCAGAATTCTAGTGTG 60.027 50.000 7.86 0.00 0.00 3.82
6154 6729 2.269940 ACCTGGGCAGAATTCTAGTGT 58.730 47.619 7.86 0.24 0.00 3.55
6155 6730 4.346418 AGATACCTGGGCAGAATTCTAGTG 59.654 45.833 7.86 0.00 0.00 2.74
6156 6731 4.561752 AGATACCTGGGCAGAATTCTAGT 58.438 43.478 7.86 2.20 0.00 2.57
6157 6732 5.559148 AAGATACCTGGGCAGAATTCTAG 57.441 43.478 7.86 1.65 0.00 2.43
6158 6733 7.072454 ACAATAAGATACCTGGGCAGAATTCTA 59.928 37.037 7.86 0.00 0.00 2.10
6168 6743 4.040952 CCCTCTGACAATAAGATACCTGGG 59.959 50.000 0.00 0.00 0.00 4.45
6172 6747 7.067496 TGAATCCCTCTGACAATAAGATACC 57.933 40.000 0.00 0.00 0.00 2.73
6215 6790 1.706443 GGGACTTCGGAAAGTGTACG 58.294 55.000 0.00 0.00 45.80 3.67
6224 6799 0.106868 TATGAGCTCGGGACTTCGGA 60.107 55.000 9.64 0.00 0.00 4.55
6226 6801 1.336332 CCATATGAGCTCGGGACTTCG 60.336 57.143 9.64 0.00 0.00 3.79
6250 6825 2.223745 GGGGCTTCAAAAAGTGTACGA 58.776 47.619 0.00 0.00 34.79 3.43
6269 6844 5.236263 TGCATACGTAAACATATGAGCTTGG 59.764 40.000 10.38 0.00 0.00 3.61
6277 6852 8.717821 GGTAATGTGATGCATACGTAAACATAT 58.282 33.333 12.20 0.00 36.67 1.78
6291 6866 5.506317 GCAGGTCTTTATGGTAATGTGATGC 60.506 44.000 0.00 0.00 0.00 3.91
6302 6877 3.135348 TCTCAGATGGCAGGTCTTTATGG 59.865 47.826 0.00 0.00 0.00 2.74
6327 6902 2.495409 TCGACACTTCGCTGTTTACA 57.505 45.000 0.00 0.00 45.46 2.41
6341 6916 8.647796 ACAGGATCCTTTATTACAATATCGACA 58.352 33.333 13.00 0.00 0.00 4.35
6380 6955 8.616076 CCACCTCAACATATTATTTCTTCTGAC 58.384 37.037 0.00 0.00 0.00 3.51
6435 7010 8.011673 CACACAAAATACTGTTACAGAGTGATG 58.988 37.037 20.07 13.46 35.18 3.07
6437 7012 7.011016 CACACACAAAATACTGTTACAGAGTGA 59.989 37.037 20.07 1.66 35.18 3.41
6562 7137 5.734720 ACGATCAACACATCCTGTAAAGAT 58.265 37.500 0.00 0.00 30.51 2.40
6574 7149 4.804608 AAATGAACGAACGATCAACACA 57.195 36.364 10.70 0.00 30.98 3.72
6620 7195 4.329801 CGAAAGTCATGGACGAATGATCAA 59.670 41.667 0.00 0.00 38.76 2.57
6621 7196 3.865164 CGAAAGTCATGGACGAATGATCA 59.135 43.478 0.00 0.00 38.76 2.92
6622 7197 3.246226 CCGAAAGTCATGGACGAATGATC 59.754 47.826 0.00 0.00 38.76 2.92
6623 7198 3.198068 CCGAAAGTCATGGACGAATGAT 58.802 45.455 0.00 0.00 38.76 2.45
6624 7199 2.616960 CCGAAAGTCATGGACGAATGA 58.383 47.619 0.00 0.00 37.67 2.57
6625 7200 1.062587 GCCGAAAGTCATGGACGAATG 59.937 52.381 0.00 0.00 37.67 2.67
6626 7201 1.066143 AGCCGAAAGTCATGGACGAAT 60.066 47.619 0.00 0.00 37.67 3.34
6627 7202 0.320374 AGCCGAAAGTCATGGACGAA 59.680 50.000 0.00 0.00 37.67 3.85
6637 7212 3.600388 CTTCAACCATAGAGCCGAAAGT 58.400 45.455 0.00 0.00 0.00 2.66
6785 7362 0.452184 TTCCAGCAAACGCGAAAACA 59.548 45.000 15.93 0.00 0.00 2.83
6822 7401 1.410882 ACATCCAAAAACAACGGTGGG 59.589 47.619 4.97 0.00 0.00 4.61
6853 7432 1.660607 CAGAATCAATGGTGACGACGG 59.339 52.381 0.00 0.00 36.31 4.79
6861 7440 0.685458 GCCCCTGCAGAATCAATGGT 60.685 55.000 17.39 0.00 37.47 3.55
6948 7527 0.319297 CCTTTTGAGCTGCTGGTTGC 60.319 55.000 7.01 0.00 43.25 4.17
6949 7528 0.319297 GCCTTTTGAGCTGCTGGTTG 60.319 55.000 7.01 0.00 0.00 3.77
6950 7529 1.799258 CGCCTTTTGAGCTGCTGGTT 61.799 55.000 7.01 0.00 0.00 3.67
6951 7530 2.263741 CGCCTTTTGAGCTGCTGGT 61.264 57.895 7.01 0.00 0.00 4.00
6952 7531 1.968017 TCGCCTTTTGAGCTGCTGG 60.968 57.895 7.01 2.16 0.00 4.85
6953 7532 1.208614 GTCGCCTTTTGAGCTGCTG 59.791 57.895 7.01 0.00 0.00 4.41
6991 7570 2.813474 CGAATTGCCTCGCCGTCA 60.813 61.111 0.00 0.00 31.04 4.35
7011 7622 2.177594 CTCGAAGCAGGTTGCCTCCT 62.178 60.000 0.00 0.00 46.52 3.69
7022 7655 0.179067 AAACGACCAACCTCGAAGCA 60.179 50.000 0.00 0.00 37.11 3.91
7077 7710 1.301401 CGAGACCAGCGGGAAACAA 60.301 57.895 10.86 0.00 38.05 2.83
7131 7764 5.221362 CCGTTAGATTGGGGTTTCTGTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
7132 7765 4.279922 CCGTTAGATTGGGGTTTCTGTTTT 59.720 41.667 0.00 0.00 0.00 2.43
7133 7766 3.824443 CCGTTAGATTGGGGTTTCTGTTT 59.176 43.478 0.00 0.00 0.00 2.83
7134 7767 3.418047 CCGTTAGATTGGGGTTTCTGTT 58.582 45.455 0.00 0.00 0.00 3.16
7135 7768 2.878526 GCCGTTAGATTGGGGTTTCTGT 60.879 50.000 0.00 0.00 0.00 3.41
7169 7802 2.040009 TAAGGGCAGTGATAGGCGCC 62.040 60.000 21.89 21.89 43.22 6.53
7170 7803 0.179056 TTAAGGGCAGTGATAGGCGC 60.179 55.000 0.00 0.00 42.61 6.53
7171 7804 2.550830 ATTAAGGGCAGTGATAGGCG 57.449 50.000 0.00 0.00 0.00 5.52
7172 7805 6.543831 CCAATATATTAAGGGCAGTGATAGGC 59.456 42.308 0.00 0.00 0.00 3.93
7173 7806 7.554118 CACCAATATATTAAGGGCAGTGATAGG 59.446 40.741 0.00 0.00 0.00 2.57
7174 7807 8.321353 TCACCAATATATTAAGGGCAGTGATAG 58.679 37.037 0.00 0.00 0.00 2.08
7175 7808 8.213489 TCACCAATATATTAAGGGCAGTGATA 57.787 34.615 0.00 0.00 0.00 2.15
7176 7809 7.090319 TCACCAATATATTAAGGGCAGTGAT 57.910 36.000 0.00 0.00 0.00 3.06
7177 7810 6.508030 TCACCAATATATTAAGGGCAGTGA 57.492 37.500 0.00 1.37 0.00 3.41
7178 7811 7.581213 TTTCACCAATATATTAAGGGCAGTG 57.419 36.000 0.00 0.00 0.00 3.66
7179 7812 8.782137 ATTTTCACCAATATATTAAGGGCAGT 57.218 30.769 0.00 0.00 0.00 4.40
7195 7828 9.793259 AGACAGAGAAAGTAATTATTTTCACCA 57.207 29.630 26.08 0.00 35.24 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.