Multiple sequence alignment - TraesCS6A01G144600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G144600 chr6A 100.000 3814 0 0 1 3814 121870009 121873822 0.000000e+00 7044.0
1 TraesCS6A01G144600 chr6A 90.282 957 77 6 996 1942 121659033 121659983 0.000000e+00 1238.0
2 TraesCS6A01G144600 chr6A 84.457 920 113 13 999 1915 120130186 120129294 0.000000e+00 880.0
3 TraesCS6A01G144600 chr6A 80.691 637 114 8 2203 2835 120128997 120128366 1.590000e-133 486.0
4 TraesCS6A01G144600 chr6D 90.967 1882 133 25 1966 3814 101214107 101215984 0.000000e+00 2499.0
5 TraesCS6A01G144600 chr6D 94.610 1373 55 8 574 1942 101211786 101213143 0.000000e+00 2108.0
6 TraesCS6A01G144600 chr6D 91.720 930 71 4 996 1925 101202194 101203117 0.000000e+00 1286.0
7 TraesCS6A01G144600 chr6D 88.309 958 103 6 988 1942 25440247 25439296 0.000000e+00 1140.0
8 TraesCS6A01G144600 chr6D 94.286 105 6 0 404 508 101206511 101206615 1.100000e-35 161.0
9 TraesCS6A01G144600 chr6B 93.596 1140 46 6 818 1942 185110341 185111468 0.000000e+00 1676.0
10 TraesCS6A01G144600 chr6B 93.478 966 57 4 1966 2931 185112465 185113424 0.000000e+00 1430.0
11 TraesCS6A01G144600 chr6B 91.167 951 74 5 996 1942 185100019 185100963 0.000000e+00 1282.0
12 TraesCS6A01G144600 chr6B 91.136 880 73 4 2938 3814 185113472 185114349 0.000000e+00 1188.0
13 TraesCS6A01G144600 chr6B 84.103 931 118 8 996 1923 184725661 184724758 0.000000e+00 872.0
14 TraesCS6A01G144600 chr6B 83.582 804 123 9 2030 2828 185101184 185101983 0.000000e+00 745.0
15 TraesCS6A01G144600 chr6B 93.154 409 26 2 1 408 6664117 6664524 1.960000e-167 599.0
16 TraesCS6A01G144600 chr6B 80.671 626 111 10 2203 2823 184700738 184700118 9.590000e-131 477.0
17 TraesCS6A01G144600 chr6B 80.125 639 118 8 2203 2837 184724470 184723837 5.770000e-128 468.0
18 TraesCS6A01G144600 chr6B 80.351 626 113 10 2203 2823 184705810 184705190 2.070000e-127 466.0
19 TraesCS6A01G144600 chr6B 90.141 71 6 1 404 473 185108732 185108802 1.460000e-14 91.6
20 TraesCS6A01G144600 chr7D 85.145 929 111 15 999 1912 17424743 17425659 0.000000e+00 926.0
21 TraesCS6A01G144600 chr7D 84.058 69 8 3 3085 3150 27492453 27492385 3.180000e-06 63.9
22 TraesCS6A01G144600 chr1D 83.798 932 124 11 999 1915 334042948 334042029 0.000000e+00 859.0
23 TraesCS6A01G144600 chr1A 82.940 932 132 14 999 1915 431979020 431978101 0.000000e+00 815.0
24 TraesCS6A01G144600 chr4B 94.264 401 22 1 1 401 364006282 364005883 2.520000e-171 612.0
25 TraesCS6A01G144600 chr3B 94.045 403 24 0 1 403 731351291 731351693 2.520000e-171 612.0
26 TraesCS6A01G144600 chr3B 93.333 405 27 0 1 405 689001715 689002119 1.960000e-167 599.0
27 TraesCS6A01G144600 chr5B 93.269 416 25 3 1 414 43969459 43969045 9.060000e-171 610.0
28 TraesCS6A01G144600 chr1B 93.399 409 27 0 1 409 31122241 31121833 1.170000e-169 606.0
29 TraesCS6A01G144600 chr1B 85.437 103 13 2 404 505 563552364 563552465 5.210000e-19 106.0
30 TraesCS6A01G144600 chrUn 94.000 400 23 1 1 400 34778267 34777869 4.210000e-169 604.0
31 TraesCS6A01G144600 chr5A 92.718 412 30 0 1 412 527356143 527355732 2.540000e-166 595.0
32 TraesCS6A01G144600 chr2A 92.736 413 28 2 1 413 723217571 723217981 2.540000e-166 595.0
33 TraesCS6A01G144600 chr2A 78.705 911 162 23 1028 1914 35634409 35635311 2.550000e-161 579.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G144600 chr6A 121870009 121873822 3813 False 7044.0 7044 100.00000 1 3814 1 chr6A.!!$F2 3813
1 TraesCS6A01G144600 chr6A 121659033 121659983 950 False 1238.0 1238 90.28200 996 1942 1 chr6A.!!$F1 946
2 TraesCS6A01G144600 chr6A 120128366 120130186 1820 True 683.0 880 82.57400 999 2835 2 chr6A.!!$R1 1836
3 TraesCS6A01G144600 chr6D 101211786 101215984 4198 False 2303.5 2499 92.78850 574 3814 2 chr6D.!!$F2 3240
4 TraesCS6A01G144600 chr6D 25439296 25440247 951 True 1140.0 1140 88.30900 988 1942 1 chr6D.!!$R1 954
5 TraesCS6A01G144600 chr6D 101202194 101206615 4421 False 723.5 1286 93.00300 404 1925 2 chr6D.!!$F1 1521
6 TraesCS6A01G144600 chr6B 185108732 185114349 5617 False 1096.4 1676 92.08775 404 3814 4 chr6B.!!$F3 3410
7 TraesCS6A01G144600 chr6B 185100019 185101983 1964 False 1013.5 1282 87.37450 996 2828 2 chr6B.!!$F2 1832
8 TraesCS6A01G144600 chr6B 184723837 184725661 1824 True 670.0 872 82.11400 996 2837 2 chr6B.!!$R3 1841
9 TraesCS6A01G144600 chr6B 184700118 184700738 620 True 477.0 477 80.67100 2203 2823 1 chr6B.!!$R1 620
10 TraesCS6A01G144600 chr6B 184705190 184705810 620 True 466.0 466 80.35100 2203 2823 1 chr6B.!!$R2 620
11 TraesCS6A01G144600 chr7D 17424743 17425659 916 False 926.0 926 85.14500 999 1912 1 chr7D.!!$F1 913
12 TraesCS6A01G144600 chr1D 334042029 334042948 919 True 859.0 859 83.79800 999 1915 1 chr1D.!!$R1 916
13 TraesCS6A01G144600 chr1A 431978101 431979020 919 True 815.0 815 82.94000 999 1915 1 chr1A.!!$R1 916
14 TraesCS6A01G144600 chr2A 35634409 35635311 902 False 579.0 579 78.70500 1028 1914 1 chr2A.!!$F1 886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
278 279 0.036765 ACACACCACACACACGTCTT 60.037 50.000 0.00 0.0 0.00 3.01 F
370 371 0.038618 CGTGTGGTCGAGATGGTCAA 60.039 55.000 0.00 0.0 0.00 3.18 F
769 2036 0.043652 CCAACAACAACGACGACGAC 60.044 55.000 15.32 0.0 42.66 4.34 F
770 2037 0.379760 CAACAACAACGACGACGACG 60.380 55.000 17.60 17.6 42.66 5.12 F
1726 3035 1.371558 GAGGAGAACCACCGCAAGT 59.628 57.895 0.00 0.0 38.94 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 3117 0.634465 GTCCTCTCCTCCTTCCTCCT 59.366 60.000 0.00 0.0 0.00 3.69 R
1947 3276 1.145945 TCAGAGAGGACTGTCACACCT 59.854 52.381 10.38 0.0 38.79 4.00 R
2609 5164 1.378250 GCACATTCTCCTGCCTGCT 60.378 57.895 0.00 0.0 0.00 4.24 R
2681 5236 2.038557 GAGCTCCCAGTCAAAGTGGTAA 59.961 50.000 0.87 0.0 36.97 2.85 R
3498 6133 0.747255 CCGTCCTCCTGTTCGATCAT 59.253 55.000 0.00 0.0 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.079446 AACACATGGCAACTCGGG 57.921 55.556 0.00 0.00 37.61 5.14
18 19 1.150536 AACACATGGCAACTCGGGT 59.849 52.632 0.00 0.00 37.61 5.28
19 20 0.398696 AACACATGGCAACTCGGGTA 59.601 50.000 0.00 0.00 37.61 3.69
20 21 0.398696 ACACATGGCAACTCGGGTAA 59.601 50.000 0.00 0.00 37.61 2.85
21 22 1.202830 ACACATGGCAACTCGGGTAAA 60.203 47.619 0.00 0.00 37.61 2.01
22 23 1.199097 CACATGGCAACTCGGGTAAAC 59.801 52.381 0.00 0.00 37.61 2.01
23 24 1.202830 ACATGGCAACTCGGGTAAACA 60.203 47.619 0.00 0.00 37.61 2.83
24 25 1.883275 CATGGCAACTCGGGTAAACAA 59.117 47.619 0.00 0.00 37.61 2.83
25 26 2.054232 TGGCAACTCGGGTAAACAAA 57.946 45.000 0.00 0.00 37.61 2.83
26 27 2.376109 TGGCAACTCGGGTAAACAAAA 58.624 42.857 0.00 0.00 37.61 2.44
27 28 2.758979 TGGCAACTCGGGTAAACAAAAA 59.241 40.909 0.00 0.00 37.61 1.94
28 29 3.181485 TGGCAACTCGGGTAAACAAAAAG 60.181 43.478 0.00 0.00 37.61 2.27
29 30 3.067040 GGCAACTCGGGTAAACAAAAAGA 59.933 43.478 0.00 0.00 0.00 2.52
30 31 4.287720 GCAACTCGGGTAAACAAAAAGAG 58.712 43.478 0.00 0.00 0.00 2.85
31 32 4.201980 GCAACTCGGGTAAACAAAAAGAGT 60.202 41.667 0.00 0.00 38.89 3.24
32 33 5.677852 GCAACTCGGGTAAACAAAAAGAGTT 60.678 40.000 0.00 2.55 44.96 3.01
33 34 5.494632 ACTCGGGTAAACAAAAAGAGTTG 57.505 39.130 0.00 0.00 34.27 3.16
34 35 4.945543 ACTCGGGTAAACAAAAAGAGTTGT 59.054 37.500 0.00 0.00 43.58 3.32
35 36 5.065602 ACTCGGGTAAACAAAAAGAGTTGTC 59.934 40.000 0.00 0.00 40.86 3.18
36 37 4.942483 TCGGGTAAACAAAAAGAGTTGTCA 59.058 37.500 0.00 0.00 40.86 3.58
37 38 5.032220 CGGGTAAACAAAAAGAGTTGTCAC 58.968 41.667 0.00 0.00 40.86 3.67
38 39 5.345702 GGGTAAACAAAAAGAGTTGTCACC 58.654 41.667 10.90 10.90 40.86 4.02
39 40 5.126545 GGGTAAACAAAAAGAGTTGTCACCT 59.873 40.000 15.65 0.00 40.86 4.00
40 41 6.033966 GGTAAACAAAAAGAGTTGTCACCTG 58.966 40.000 11.62 0.00 40.86 4.00
41 42 3.782889 ACAAAAAGAGTTGTCACCTGC 57.217 42.857 0.00 0.00 37.10 4.85
42 43 3.356290 ACAAAAAGAGTTGTCACCTGCT 58.644 40.909 0.00 0.00 37.10 4.24
43 44 3.763897 ACAAAAAGAGTTGTCACCTGCTT 59.236 39.130 0.00 0.00 37.10 3.91
44 45 4.947388 ACAAAAAGAGTTGTCACCTGCTTA 59.053 37.500 0.00 0.00 37.10 3.09
45 46 5.594317 ACAAAAAGAGTTGTCACCTGCTTAT 59.406 36.000 0.00 0.00 37.10 1.73
46 47 6.770785 ACAAAAAGAGTTGTCACCTGCTTATA 59.229 34.615 0.00 0.00 37.10 0.98
47 48 7.284489 ACAAAAAGAGTTGTCACCTGCTTATAA 59.716 33.333 0.00 0.00 37.10 0.98
48 49 7.817418 AAAAGAGTTGTCACCTGCTTATAAA 57.183 32.000 0.00 0.00 0.00 1.40
49 50 7.440523 AAAGAGTTGTCACCTGCTTATAAAG 57.559 36.000 0.00 0.00 0.00 1.85
61 62 1.940613 CTTATAAAGCACACTCGGGGC 59.059 52.381 0.00 0.00 0.00 5.80
62 63 0.906066 TATAAAGCACACTCGGGGCA 59.094 50.000 0.00 0.00 0.00 5.36
63 64 0.392998 ATAAAGCACACTCGGGGCAG 60.393 55.000 0.00 0.00 0.00 4.85
64 65 1.764571 TAAAGCACACTCGGGGCAGT 61.765 55.000 0.00 0.00 0.00 4.40
65 66 2.624674 AAAGCACACTCGGGGCAGTT 62.625 55.000 0.00 0.00 0.00 3.16
66 67 3.357079 GCACACTCGGGGCAGTTG 61.357 66.667 0.00 0.00 0.00 3.16
67 68 3.357079 CACACTCGGGGCAGTTGC 61.357 66.667 0.00 0.00 41.14 4.17
83 84 2.030262 GCCATGGGCGTTGCAAAA 59.970 55.556 15.13 0.00 39.62 2.44
84 85 1.596477 GCCATGGGCGTTGCAAAAA 60.596 52.632 15.13 0.00 39.62 1.94
85 86 1.840630 GCCATGGGCGTTGCAAAAAC 61.841 55.000 15.13 0.00 39.62 2.43
86 87 0.531532 CCATGGGCGTTGCAAAAACA 60.532 50.000 2.85 0.00 0.00 2.83
87 88 0.581053 CATGGGCGTTGCAAAAACAC 59.419 50.000 0.00 0.00 0.00 3.32
88 89 0.176680 ATGGGCGTTGCAAAAACACA 59.823 45.000 0.00 0.62 0.00 3.72
89 90 0.176680 TGGGCGTTGCAAAAACACAT 59.823 45.000 0.00 0.00 0.00 3.21
90 91 0.581053 GGGCGTTGCAAAAACACATG 59.419 50.000 0.00 0.00 0.00 3.21
91 92 0.581053 GGCGTTGCAAAAACACATGG 59.419 50.000 0.00 0.00 0.00 3.66
92 93 0.042274 GCGTTGCAAAAACACATGGC 60.042 50.000 0.00 0.00 0.00 4.40
93 94 1.284657 CGTTGCAAAAACACATGGCA 58.715 45.000 0.00 0.00 0.00 4.92
94 95 1.662629 CGTTGCAAAAACACATGGCAA 59.337 42.857 0.00 0.00 41.67 4.52
96 97 2.687700 TGCAAAAACACATGGCAACT 57.312 40.000 0.00 0.00 37.61 3.16
97 98 3.808466 TGCAAAAACACATGGCAACTA 57.192 38.095 0.00 0.00 37.61 2.24
98 99 3.715495 TGCAAAAACACATGGCAACTAG 58.285 40.909 0.00 0.00 37.61 2.57
99 100 2.476241 GCAAAAACACATGGCAACTAGC 59.524 45.455 0.00 0.00 44.65 3.42
109 110 2.464682 GCAACTAGCAGCTGGAGTG 58.535 57.895 17.12 10.84 44.79 3.51
110 111 0.321122 GCAACTAGCAGCTGGAGTGT 60.321 55.000 17.12 0.00 44.79 3.55
111 112 1.436600 CAACTAGCAGCTGGAGTGTG 58.563 55.000 17.12 3.48 0.00 3.82
112 113 0.322975 AACTAGCAGCTGGAGTGTGG 59.677 55.000 17.12 0.00 0.00 4.17
113 114 1.220206 CTAGCAGCTGGAGTGTGGG 59.780 63.158 17.12 0.00 0.00 4.61
114 115 1.229177 TAGCAGCTGGAGTGTGGGA 60.229 57.895 17.12 0.00 0.00 4.37
115 116 1.260538 TAGCAGCTGGAGTGTGGGAG 61.261 60.000 17.12 0.00 0.00 4.30
116 117 2.587247 GCAGCTGGAGTGTGGGAGA 61.587 63.158 17.12 0.00 0.00 3.71
117 118 1.595882 CAGCTGGAGTGTGGGAGAG 59.404 63.158 5.57 0.00 0.00 3.20
118 119 1.611851 AGCTGGAGTGTGGGAGAGG 60.612 63.158 0.00 0.00 0.00 3.69
119 120 1.610673 GCTGGAGTGTGGGAGAGGA 60.611 63.158 0.00 0.00 0.00 3.71
120 121 1.612395 GCTGGAGTGTGGGAGAGGAG 61.612 65.000 0.00 0.00 0.00 3.69
121 122 0.040351 CTGGAGTGTGGGAGAGGAGA 59.960 60.000 0.00 0.00 0.00 3.71
122 123 0.487325 TGGAGTGTGGGAGAGGAGAA 59.513 55.000 0.00 0.00 0.00 2.87
123 124 1.190643 GGAGTGTGGGAGAGGAGAAG 58.809 60.000 0.00 0.00 0.00 2.85
124 125 1.190643 GAGTGTGGGAGAGGAGAAGG 58.809 60.000 0.00 0.00 0.00 3.46
125 126 0.252467 AGTGTGGGAGAGGAGAAGGG 60.252 60.000 0.00 0.00 0.00 3.95
126 127 1.613630 TGTGGGAGAGGAGAAGGGC 60.614 63.158 0.00 0.00 0.00 5.19
127 128 2.364317 TGGGAGAGGAGAAGGGCG 60.364 66.667 0.00 0.00 0.00 6.13
128 129 2.364448 GGGAGAGGAGAAGGGCGT 60.364 66.667 0.00 0.00 0.00 5.68
129 130 2.726351 GGGAGAGGAGAAGGGCGTG 61.726 68.421 0.00 0.00 0.00 5.34
130 131 1.985116 GGAGAGGAGAAGGGCGTGT 60.985 63.158 0.00 0.00 0.00 4.49
131 132 1.216710 GAGAGGAGAAGGGCGTGTG 59.783 63.158 0.00 0.00 0.00 3.82
132 133 2.232298 GAGAGGAGAAGGGCGTGTGG 62.232 65.000 0.00 0.00 0.00 4.17
133 134 3.316573 GAGGAGAAGGGCGTGTGGG 62.317 68.421 0.00 0.00 0.00 4.61
134 135 3.637273 GGAGAAGGGCGTGTGGGT 61.637 66.667 0.00 0.00 0.00 4.51
135 136 2.358737 GAGAAGGGCGTGTGGGTG 60.359 66.667 0.00 0.00 0.00 4.61
136 137 2.847234 AGAAGGGCGTGTGGGTGA 60.847 61.111 0.00 0.00 0.00 4.02
137 138 2.358737 GAAGGGCGTGTGGGTGAG 60.359 66.667 0.00 0.00 0.00 3.51
138 139 2.847234 AAGGGCGTGTGGGTGAGA 60.847 61.111 0.00 0.00 0.00 3.27
139 140 2.185310 GAAGGGCGTGTGGGTGAGAT 62.185 60.000 0.00 0.00 0.00 2.75
140 141 2.436646 GGGCGTGTGGGTGAGATG 60.437 66.667 0.00 0.00 0.00 2.90
141 142 2.436646 GGCGTGTGGGTGAGATGG 60.437 66.667 0.00 0.00 0.00 3.51
142 143 3.127533 GCGTGTGGGTGAGATGGC 61.128 66.667 0.00 0.00 0.00 4.40
143 144 2.347114 CGTGTGGGTGAGATGGCA 59.653 61.111 0.00 0.00 0.00 4.92
144 145 1.302431 CGTGTGGGTGAGATGGCAA 60.302 57.895 0.00 0.00 0.00 4.52
145 146 0.888736 CGTGTGGGTGAGATGGCAAA 60.889 55.000 0.00 0.00 0.00 3.68
146 147 1.549203 GTGTGGGTGAGATGGCAAAT 58.451 50.000 0.00 0.00 0.00 2.32
147 148 1.203052 GTGTGGGTGAGATGGCAAATG 59.797 52.381 0.00 0.00 0.00 2.32
148 149 0.174162 GTGGGTGAGATGGCAAATGC 59.826 55.000 0.00 0.00 41.14 3.56
158 159 3.136750 GCAAATGCCCACACACCA 58.863 55.556 0.00 0.00 34.31 4.17
159 160 1.005867 GCAAATGCCCACACACCAG 60.006 57.895 0.00 0.00 34.31 4.00
160 161 1.005867 CAAATGCCCACACACCAGC 60.006 57.895 0.00 0.00 0.00 4.85
161 162 2.209315 AAATGCCCACACACCAGCC 61.209 57.895 0.00 0.00 0.00 4.85
162 163 2.661574 AAATGCCCACACACCAGCCT 62.662 55.000 0.00 0.00 0.00 4.58
163 164 2.661574 AATGCCCACACACCAGCCTT 62.662 55.000 0.00 0.00 0.00 4.35
164 165 2.521708 GCCCACACACCAGCCTTT 60.522 61.111 0.00 0.00 0.00 3.11
165 166 2.859981 GCCCACACACCAGCCTTTG 61.860 63.158 0.00 0.00 0.00 2.77
166 167 1.455587 CCCACACACCAGCCTTTGT 60.456 57.895 0.00 0.00 0.00 2.83
168 169 1.066257 CACACACCAGCCTTTGTGC 59.934 57.895 8.66 0.00 45.92 4.57
169 170 2.332514 CACACCAGCCTTTGTGCG 59.667 61.111 0.00 0.00 36.95 5.34
170 171 2.124320 ACACCAGCCTTTGTGCGT 60.124 55.556 0.00 0.00 35.90 5.24
171 172 2.332514 CACCAGCCTTTGTGCGTG 59.667 61.111 0.00 0.00 36.02 5.34
172 173 2.186160 CACCAGCCTTTGTGCGTGA 61.186 57.895 0.00 0.00 36.02 4.35
173 174 2.186826 ACCAGCCTTTGTGCGTGAC 61.187 57.895 0.00 0.00 36.02 3.67
174 175 1.893808 CCAGCCTTTGTGCGTGACT 60.894 57.895 0.00 0.00 36.02 3.41
175 176 1.280746 CAGCCTTTGTGCGTGACTG 59.719 57.895 0.00 0.00 36.02 3.51
176 177 1.146041 AGCCTTTGTGCGTGACTGA 59.854 52.632 0.00 0.00 36.02 3.41
177 178 0.463654 AGCCTTTGTGCGTGACTGAA 60.464 50.000 0.00 0.00 36.02 3.02
178 179 0.380378 GCCTTTGTGCGTGACTGAAA 59.620 50.000 0.00 0.00 0.00 2.69
179 180 1.202245 GCCTTTGTGCGTGACTGAAAA 60.202 47.619 0.00 0.00 0.00 2.29
180 181 2.450160 CCTTTGTGCGTGACTGAAAAC 58.550 47.619 0.00 0.00 0.00 2.43
181 182 2.097466 CCTTTGTGCGTGACTGAAAACT 59.903 45.455 0.00 0.00 0.00 2.66
182 183 2.823196 TTGTGCGTGACTGAAAACTG 57.177 45.000 0.00 0.00 0.00 3.16
183 184 1.013596 TGTGCGTGACTGAAAACTGG 58.986 50.000 0.00 0.00 0.00 4.00
184 185 1.014352 GTGCGTGACTGAAAACTGGT 58.986 50.000 0.00 0.00 0.00 4.00
185 186 1.013596 TGCGTGACTGAAAACTGGTG 58.986 50.000 0.00 0.00 0.00 4.17
186 187 1.014352 GCGTGACTGAAAACTGGTGT 58.986 50.000 0.00 0.00 0.00 4.16
187 188 1.268032 GCGTGACTGAAAACTGGTGTG 60.268 52.381 0.00 0.00 0.00 3.82
188 189 2.006888 CGTGACTGAAAACTGGTGTGT 58.993 47.619 0.00 0.00 0.00 3.72
189 190 2.223021 CGTGACTGAAAACTGGTGTGTG 60.223 50.000 0.00 0.00 0.00 3.82
190 191 2.097466 GTGACTGAAAACTGGTGTGTGG 59.903 50.000 0.00 0.00 0.00 4.17
191 192 1.676006 GACTGAAAACTGGTGTGTGGG 59.324 52.381 0.00 0.00 0.00 4.61
192 193 1.005450 ACTGAAAACTGGTGTGTGGGT 59.995 47.619 0.00 0.00 0.00 4.51
193 194 1.405105 CTGAAAACTGGTGTGTGGGTG 59.595 52.381 0.00 0.00 0.00 4.61
194 195 1.004862 TGAAAACTGGTGTGTGGGTGA 59.995 47.619 0.00 0.00 0.00 4.02
195 196 2.096248 GAAAACTGGTGTGTGGGTGAA 58.904 47.619 0.00 0.00 0.00 3.18
196 197 1.470051 AAACTGGTGTGTGGGTGAAC 58.530 50.000 0.00 0.00 0.00 3.18
197 198 0.623723 AACTGGTGTGTGGGTGAACT 59.376 50.000 0.00 0.00 0.00 3.01
198 199 0.107214 ACTGGTGTGTGGGTGAACTG 60.107 55.000 0.00 0.00 0.00 3.16
199 200 1.447317 CTGGTGTGTGGGTGAACTGC 61.447 60.000 0.00 0.00 0.00 4.40
200 201 1.152963 GGTGTGTGGGTGAACTGCT 60.153 57.895 0.00 0.00 0.00 4.24
201 202 0.107831 GGTGTGTGGGTGAACTGCTA 59.892 55.000 0.00 0.00 0.00 3.49
202 203 1.476110 GGTGTGTGGGTGAACTGCTAA 60.476 52.381 0.00 0.00 0.00 3.09
203 204 2.294074 GTGTGTGGGTGAACTGCTAAA 58.706 47.619 0.00 0.00 0.00 1.85
204 205 2.032924 GTGTGTGGGTGAACTGCTAAAC 59.967 50.000 0.00 0.00 0.00 2.01
205 206 1.263217 GTGTGGGTGAACTGCTAAACG 59.737 52.381 0.00 0.00 0.00 3.60
206 207 0.237498 GTGGGTGAACTGCTAAACGC 59.763 55.000 0.00 0.00 39.77 4.84
207 208 0.887387 TGGGTGAACTGCTAAACGCC 60.887 55.000 0.00 0.00 38.05 5.68
208 209 1.583495 GGGTGAACTGCTAAACGCCC 61.583 60.000 0.00 0.00 44.04 6.13
209 210 0.887387 GGTGAACTGCTAAACGCCCA 60.887 55.000 0.00 0.00 38.05 5.36
210 211 0.237498 GTGAACTGCTAAACGCCCAC 59.763 55.000 0.00 0.00 38.05 4.61
211 212 0.179043 TGAACTGCTAAACGCCCACA 60.179 50.000 0.00 0.00 38.05 4.17
212 213 0.237498 GAACTGCTAAACGCCCACAC 59.763 55.000 0.00 0.00 38.05 3.82
213 214 0.464735 AACTGCTAAACGCCCACACA 60.465 50.000 0.00 0.00 38.05 3.72
214 215 1.164041 ACTGCTAAACGCCCACACAC 61.164 55.000 0.00 0.00 38.05 3.82
215 216 1.852067 CTGCTAAACGCCCACACACC 61.852 60.000 0.00 0.00 38.05 4.16
216 217 2.961669 GCTAAACGCCCACACACCG 61.962 63.158 0.00 0.00 0.00 4.94
217 218 2.280933 TAAACGCCCACACACCGG 60.281 61.111 0.00 0.00 0.00 5.28
233 234 3.324108 GGCCCCTCCGTGTGGTAA 61.324 66.667 0.00 0.00 36.30 2.85
234 235 2.751688 GCCCCTCCGTGTGGTAAA 59.248 61.111 0.00 0.00 36.30 2.01
235 236 1.073548 GCCCCTCCGTGTGGTAAAA 59.926 57.895 0.00 0.00 36.30 1.52
236 237 1.239296 GCCCCTCCGTGTGGTAAAAC 61.239 60.000 0.00 0.00 36.30 2.43
237 238 0.108963 CCCCTCCGTGTGGTAAAACA 59.891 55.000 0.00 0.00 36.30 2.83
238 239 1.519408 CCCTCCGTGTGGTAAAACAG 58.481 55.000 0.00 0.00 36.30 3.16
239 240 1.071071 CCCTCCGTGTGGTAAAACAGA 59.929 52.381 0.00 0.00 36.30 3.41
240 241 2.290071 CCCTCCGTGTGGTAAAACAGAT 60.290 50.000 0.00 0.00 36.30 2.90
241 242 2.742053 CCTCCGTGTGGTAAAACAGATG 59.258 50.000 0.00 0.00 36.30 2.90
242 243 3.399330 CTCCGTGTGGTAAAACAGATGT 58.601 45.455 0.00 0.00 36.30 3.06
243 244 3.135225 TCCGTGTGGTAAAACAGATGTG 58.865 45.455 0.00 0.00 36.30 3.21
244 245 2.875933 CCGTGTGGTAAAACAGATGTGT 59.124 45.455 0.00 0.00 39.19 3.72
245 246 3.303725 CCGTGTGGTAAAACAGATGTGTG 60.304 47.826 0.00 0.00 36.84 3.82
246 247 3.303725 CGTGTGGTAAAACAGATGTGTGG 60.304 47.826 0.00 0.00 36.84 4.17
247 248 3.004315 GTGTGGTAAAACAGATGTGTGGG 59.996 47.826 0.00 0.00 36.84 4.61
248 249 3.219281 GTGGTAAAACAGATGTGTGGGT 58.781 45.455 0.00 0.00 36.84 4.51
249 250 3.004315 GTGGTAAAACAGATGTGTGGGTG 59.996 47.826 0.00 0.00 36.84 4.61
250 251 3.117851 TGGTAAAACAGATGTGTGGGTGA 60.118 43.478 0.00 0.00 36.84 4.02
251 252 3.886505 GGTAAAACAGATGTGTGGGTGAA 59.113 43.478 0.00 0.00 36.84 3.18
252 253 4.261447 GGTAAAACAGATGTGTGGGTGAAC 60.261 45.833 0.00 0.00 36.84 3.18
253 254 3.297134 AAACAGATGTGTGGGTGAACT 57.703 42.857 0.00 0.00 36.84 3.01
254 255 4.431416 AAACAGATGTGTGGGTGAACTA 57.569 40.909 0.00 0.00 36.84 2.24
255 256 4.640771 AACAGATGTGTGGGTGAACTAT 57.359 40.909 0.00 0.00 36.84 2.12
256 257 3.942829 ACAGATGTGTGGGTGAACTATG 58.057 45.455 0.00 0.00 34.75 2.23
257 258 3.327757 ACAGATGTGTGGGTGAACTATGT 59.672 43.478 0.00 0.00 34.75 2.29
258 259 3.935203 CAGATGTGTGGGTGAACTATGTC 59.065 47.826 0.00 0.00 0.00 3.06
259 260 3.582647 AGATGTGTGGGTGAACTATGTCA 59.417 43.478 0.00 0.00 0.00 3.58
260 261 3.120321 TGTGTGGGTGAACTATGTCAC 57.880 47.619 0.00 0.00 45.99 3.67
268 269 3.462982 GTGAACTATGTCACACACCACA 58.537 45.455 0.55 0.00 46.00 4.17
269 270 3.247648 GTGAACTATGTCACACACCACAC 59.752 47.826 0.55 0.00 46.00 3.82
270 271 3.118592 TGAACTATGTCACACACCACACA 60.119 43.478 0.00 0.00 0.00 3.72
271 272 2.833794 ACTATGTCACACACCACACAC 58.166 47.619 0.00 0.00 0.00 3.82
272 273 2.169561 ACTATGTCACACACCACACACA 59.830 45.455 0.00 0.00 0.00 3.72
273 274 1.378531 ATGTCACACACCACACACAC 58.621 50.000 0.00 0.00 0.00 3.82
274 275 1.016653 TGTCACACACCACACACACG 61.017 55.000 0.00 0.00 0.00 4.49
275 276 1.017177 GTCACACACCACACACACGT 61.017 55.000 0.00 0.00 0.00 4.49
276 277 0.738063 TCACACACCACACACACGTC 60.738 55.000 0.00 0.00 0.00 4.34
277 278 0.739462 CACACACCACACACACGTCT 60.739 55.000 0.00 0.00 0.00 4.18
278 279 0.036765 ACACACCACACACACGTCTT 60.037 50.000 0.00 0.00 0.00 3.01
279 280 0.373370 CACACCACACACACGTCTTG 59.627 55.000 0.00 0.00 0.00 3.02
280 281 0.036765 ACACCACACACACGTCTTGT 60.037 50.000 0.00 0.00 39.97 3.16
281 282 0.650512 CACCACACACACGTCTTGTC 59.349 55.000 0.00 0.00 35.67 3.18
282 283 0.535335 ACCACACACACGTCTTGTCT 59.465 50.000 0.00 0.00 35.67 3.41
283 284 1.066430 ACCACACACACGTCTTGTCTT 60.066 47.619 0.00 0.00 35.67 3.01
284 285 2.166870 ACCACACACACGTCTTGTCTTA 59.833 45.455 0.00 0.00 35.67 2.10
285 286 2.538449 CCACACACACGTCTTGTCTTAC 59.462 50.000 0.00 0.00 35.67 2.34
286 287 2.215587 CACACACACGTCTTGTCTTACG 59.784 50.000 0.00 0.00 44.47 3.18
291 292 3.188773 CGTCTTGTCTTACGTGGCA 57.811 52.632 0.00 0.00 34.48 4.92
292 293 1.710013 CGTCTTGTCTTACGTGGCAT 58.290 50.000 0.00 0.00 34.48 4.40
293 294 2.871133 CGTCTTGTCTTACGTGGCATA 58.129 47.619 0.00 0.00 34.48 3.14
294 295 2.852413 CGTCTTGTCTTACGTGGCATAG 59.148 50.000 0.00 0.00 34.48 2.23
295 296 3.427098 CGTCTTGTCTTACGTGGCATAGA 60.427 47.826 0.00 0.00 34.48 1.98
296 297 4.491676 GTCTTGTCTTACGTGGCATAGAA 58.508 43.478 0.00 0.00 0.00 2.10
297 298 4.927425 GTCTTGTCTTACGTGGCATAGAAA 59.073 41.667 0.00 0.00 0.00 2.52
298 299 5.407387 GTCTTGTCTTACGTGGCATAGAAAA 59.593 40.000 0.00 0.00 0.00 2.29
299 300 5.407387 TCTTGTCTTACGTGGCATAGAAAAC 59.593 40.000 0.00 0.00 0.00 2.43
300 301 3.998341 TGTCTTACGTGGCATAGAAAACC 59.002 43.478 0.00 0.00 0.00 3.27
301 302 3.998341 GTCTTACGTGGCATAGAAAACCA 59.002 43.478 0.00 0.00 0.00 3.67
302 303 4.092968 GTCTTACGTGGCATAGAAAACCAG 59.907 45.833 0.00 0.00 33.12 4.00
303 304 1.165270 ACGTGGCATAGAAAACCAGC 58.835 50.000 0.00 0.00 33.12 4.85
304 305 0.451783 CGTGGCATAGAAAACCAGCC 59.548 55.000 0.00 0.00 45.41 4.85
307 308 2.128771 GGCATAGAAAACCAGCCAGA 57.871 50.000 0.00 0.00 44.59 3.86
308 309 2.659428 GGCATAGAAAACCAGCCAGAT 58.341 47.619 0.00 0.00 44.59 2.90
309 310 3.026694 GGCATAGAAAACCAGCCAGATT 58.973 45.455 0.00 0.00 44.59 2.40
310 311 3.181483 GGCATAGAAAACCAGCCAGATTG 60.181 47.826 0.00 0.00 44.59 2.67
311 312 3.445096 GCATAGAAAACCAGCCAGATTGT 59.555 43.478 0.00 0.00 0.00 2.71
312 313 4.676196 GCATAGAAAACCAGCCAGATTGTG 60.676 45.833 0.00 0.00 0.00 3.33
313 314 1.615392 AGAAAACCAGCCAGATTGTGC 59.385 47.619 0.00 0.00 0.00 4.57
314 315 0.681175 AAAACCAGCCAGATTGTGCC 59.319 50.000 0.00 0.00 0.00 5.01
315 316 0.469705 AAACCAGCCAGATTGTGCCA 60.470 50.000 0.00 0.00 0.00 4.92
316 317 0.469705 AACCAGCCAGATTGTGCCAA 60.470 50.000 0.00 0.00 0.00 4.52
317 318 0.896940 ACCAGCCAGATTGTGCCAAG 60.897 55.000 0.00 0.00 0.00 3.61
318 319 0.609957 CCAGCCAGATTGTGCCAAGA 60.610 55.000 0.00 0.00 0.00 3.02
319 320 1.471119 CAGCCAGATTGTGCCAAGAT 58.529 50.000 0.00 0.00 0.00 2.40
320 321 1.822990 CAGCCAGATTGTGCCAAGATT 59.177 47.619 0.00 0.00 0.00 2.40
321 322 2.097825 AGCCAGATTGTGCCAAGATTC 58.902 47.619 0.00 0.00 0.00 2.52
322 323 1.202222 GCCAGATTGTGCCAAGATTCG 60.202 52.381 0.00 0.00 0.00 3.34
323 324 2.086869 CCAGATTGTGCCAAGATTCGT 58.913 47.619 0.00 0.00 0.00 3.85
324 325 2.159476 CCAGATTGTGCCAAGATTCGTG 60.159 50.000 0.00 0.00 0.00 4.35
325 326 1.470098 AGATTGTGCCAAGATTCGTGC 59.530 47.619 0.00 0.00 0.00 5.34
326 327 1.199789 GATTGTGCCAAGATTCGTGCA 59.800 47.619 0.00 0.00 0.00 4.57
327 328 1.246649 TTGTGCCAAGATTCGTGCAT 58.753 45.000 0.00 0.00 35.96 3.96
328 329 2.106477 TGTGCCAAGATTCGTGCATA 57.894 45.000 0.00 0.00 35.96 3.14
329 330 2.642427 TGTGCCAAGATTCGTGCATAT 58.358 42.857 0.00 0.00 35.96 1.78
330 331 3.802866 TGTGCCAAGATTCGTGCATATA 58.197 40.909 0.00 0.00 35.96 0.86
331 332 4.195416 TGTGCCAAGATTCGTGCATATAA 58.805 39.130 0.00 0.00 35.96 0.98
332 333 4.821260 TGTGCCAAGATTCGTGCATATAAT 59.179 37.500 0.00 0.00 35.96 1.28
333 334 5.994668 TGTGCCAAGATTCGTGCATATAATA 59.005 36.000 0.00 0.00 35.96 0.98
334 335 6.073276 TGTGCCAAGATTCGTGCATATAATAC 60.073 38.462 0.00 0.00 35.96 1.89
335 336 6.147821 GTGCCAAGATTCGTGCATATAATACT 59.852 38.462 0.00 0.00 35.96 2.12
336 337 6.147656 TGCCAAGATTCGTGCATATAATACTG 59.852 38.462 0.00 0.00 0.00 2.74
337 338 6.402550 GCCAAGATTCGTGCATATAATACTGG 60.403 42.308 0.00 2.47 0.00 4.00
338 339 6.873605 CCAAGATTCGTGCATATAATACTGGA 59.126 38.462 0.00 0.00 0.00 3.86
339 340 7.148573 CCAAGATTCGTGCATATAATACTGGAC 60.149 40.741 0.00 0.00 0.00 4.02
347 348 8.926715 GTGCATATAATACTGGACGATGATAA 57.073 34.615 0.00 0.00 0.00 1.75
348 349 9.366216 GTGCATATAATACTGGACGATGATAAA 57.634 33.333 0.00 0.00 0.00 1.40
352 353 5.845985 AATACTGGACGATGATAAATGCG 57.154 39.130 0.00 0.00 0.00 4.73
353 354 3.179443 ACTGGACGATGATAAATGCGT 57.821 42.857 0.00 0.00 39.99 5.24
354 355 2.866156 ACTGGACGATGATAAATGCGTG 59.134 45.455 0.00 0.00 37.07 5.34
355 356 2.866156 CTGGACGATGATAAATGCGTGT 59.134 45.455 0.00 0.00 37.07 4.49
356 357 2.607180 TGGACGATGATAAATGCGTGTG 59.393 45.455 0.00 0.00 37.07 3.82
357 358 2.032894 GGACGATGATAAATGCGTGTGG 60.033 50.000 0.00 0.00 37.07 4.17
358 359 2.607635 GACGATGATAAATGCGTGTGGT 59.392 45.455 0.00 0.00 37.07 4.16
359 360 2.607635 ACGATGATAAATGCGTGTGGTC 59.392 45.455 0.00 0.00 35.44 4.02
360 361 2.347568 CGATGATAAATGCGTGTGGTCG 60.348 50.000 0.00 0.00 0.00 4.79
361 362 2.371910 TGATAAATGCGTGTGGTCGA 57.628 45.000 0.00 0.00 0.00 4.20
362 363 2.267426 TGATAAATGCGTGTGGTCGAG 58.733 47.619 0.00 0.00 0.00 4.04
363 364 2.094442 TGATAAATGCGTGTGGTCGAGA 60.094 45.455 0.00 0.00 0.00 4.04
364 365 2.665649 TAAATGCGTGTGGTCGAGAT 57.334 45.000 0.00 0.00 0.00 2.75
365 366 1.078709 AAATGCGTGTGGTCGAGATG 58.921 50.000 0.00 0.00 0.00 2.90
366 367 0.740868 AATGCGTGTGGTCGAGATGG 60.741 55.000 0.00 0.00 0.00 3.51
367 368 1.888436 ATGCGTGTGGTCGAGATGGT 61.888 55.000 0.00 0.00 0.00 3.55
368 369 1.805945 GCGTGTGGTCGAGATGGTC 60.806 63.158 0.00 0.00 0.00 4.02
369 370 1.584495 CGTGTGGTCGAGATGGTCA 59.416 57.895 0.00 0.00 0.00 4.02
370 371 0.038618 CGTGTGGTCGAGATGGTCAA 60.039 55.000 0.00 0.00 0.00 3.18
371 372 1.429463 GTGTGGTCGAGATGGTCAAC 58.571 55.000 0.00 0.00 0.00 3.18
372 373 0.038618 TGTGGTCGAGATGGTCAACG 60.039 55.000 0.00 0.00 0.00 4.10
373 374 1.080093 TGGTCGAGATGGTCAACGC 60.080 57.895 0.00 0.00 0.00 4.84
374 375 1.810030 GGTCGAGATGGTCAACGCC 60.810 63.158 0.00 0.00 0.00 5.68
375 376 1.810030 GTCGAGATGGTCAACGCCC 60.810 63.158 0.00 0.00 0.00 6.13
376 377 2.264480 CGAGATGGTCAACGCCCA 59.736 61.111 0.00 0.00 36.16 5.36
377 378 2.100631 CGAGATGGTCAACGCCCAC 61.101 63.158 0.00 0.00 34.07 4.61
378 379 1.003839 GAGATGGTCAACGCCCACA 60.004 57.895 0.00 0.00 34.07 4.17
379 380 1.298859 GAGATGGTCAACGCCCACAC 61.299 60.000 0.00 0.00 34.07 3.82
380 381 2.668212 ATGGTCAACGCCCACACG 60.668 61.111 0.00 0.00 34.07 4.49
392 393 3.720531 CACACGTGTGGGCGTTAA 58.279 55.556 35.65 0.00 43.83 2.01
393 394 1.277440 CACACGTGTGGGCGTTAAC 59.723 57.895 35.65 0.00 43.83 2.01
394 395 1.153409 ACACGTGTGGGCGTTAACA 60.153 52.632 22.71 0.00 43.83 2.41
395 396 0.533308 ACACGTGTGGGCGTTAACAT 60.533 50.000 22.71 0.00 43.83 2.71
396 397 0.589223 CACGTGTGGGCGTTAACATT 59.411 50.000 7.58 0.00 43.83 2.71
397 398 1.002251 CACGTGTGGGCGTTAACATTT 60.002 47.619 7.58 0.00 43.83 2.32
398 399 1.677052 ACGTGTGGGCGTTAACATTTT 59.323 42.857 6.39 0.00 43.04 1.82
399 400 2.287129 ACGTGTGGGCGTTAACATTTTC 60.287 45.455 6.39 0.00 43.04 2.29
400 401 2.312348 GTGTGGGCGTTAACATTTTCG 58.688 47.619 6.39 0.00 0.00 3.46
401 402 1.948145 TGTGGGCGTTAACATTTTCGT 59.052 42.857 6.39 0.00 0.00 3.85
402 403 2.358267 TGTGGGCGTTAACATTTTCGTT 59.642 40.909 6.39 0.00 0.00 3.85
403 404 3.181489 TGTGGGCGTTAACATTTTCGTTT 60.181 39.130 6.39 0.00 0.00 3.60
404 405 4.036027 TGTGGGCGTTAACATTTTCGTTTA 59.964 37.500 6.39 0.00 0.00 2.01
405 406 5.155643 GTGGGCGTTAACATTTTCGTTTAT 58.844 37.500 6.39 0.00 0.00 1.40
406 407 5.630264 GTGGGCGTTAACATTTTCGTTTATT 59.370 36.000 6.39 0.00 0.00 1.40
407 408 6.144241 GTGGGCGTTAACATTTTCGTTTATTT 59.856 34.615 6.39 0.00 0.00 1.40
408 409 7.325579 GTGGGCGTTAACATTTTCGTTTATTTA 59.674 33.333 6.39 0.00 0.00 1.40
430 431 9.762381 ATTTATAGTTGACCCCTTTTGTAATGA 57.238 29.630 0.00 0.00 0.00 2.57
490 492 9.162764 AGTGCTTTATGATGTTCGTAAATAACT 57.837 29.630 3.17 6.70 37.26 2.24
491 493 9.769093 GTGCTTTATGATGTTCGTAAATAACTT 57.231 29.630 3.17 0.00 37.26 2.66
497 499 7.845617 TGATGTTCGTAAATAACTTTTGTGC 57.154 32.000 0.00 0.00 0.00 4.57
498 500 7.644490 TGATGTTCGTAAATAACTTTTGTGCT 58.356 30.769 0.00 0.00 0.00 4.40
499 501 7.801315 TGATGTTCGTAAATAACTTTTGTGCTC 59.199 33.333 0.00 0.00 0.00 4.26
500 502 7.017498 TGTTCGTAAATAACTTTTGTGCTCA 57.983 32.000 0.00 0.00 0.00 4.26
501 503 7.644490 TGTTCGTAAATAACTTTTGTGCTCAT 58.356 30.769 0.00 0.00 0.00 2.90
502 504 8.775527 TGTTCGTAAATAACTTTTGTGCTCATA 58.224 29.630 0.00 0.00 0.00 2.15
503 505 9.769093 GTTCGTAAATAACTTTTGTGCTCATAT 57.231 29.630 0.00 0.00 0.00 1.78
505 507 9.982291 TCGTAAATAACTTTTGTGCTCATATTC 57.018 29.630 0.00 0.00 0.00 1.75
506 508 9.767684 CGTAAATAACTTTTGTGCTCATATTCA 57.232 29.630 0.00 0.00 0.00 2.57
545 547 9.755064 CATATTTAACGAGAAACTGTTCGAAAT 57.245 29.630 0.00 6.40 39.93 2.17
548 550 8.976715 TTTAACGAGAAACTGTTCGAAATAAC 57.023 30.769 0.00 0.00 39.93 1.89
556 558 7.908601 AGAAACTGTTCGAAATAACAAAGTGTC 59.091 33.333 0.00 0.00 38.81 3.67
558 560 7.259290 ACTGTTCGAAATAACAAAGTGTCAT 57.741 32.000 0.00 0.00 38.81 3.06
559 561 7.132213 ACTGTTCGAAATAACAAAGTGTCATG 58.868 34.615 0.00 0.00 38.81 3.07
560 562 5.912396 TGTTCGAAATAACAAAGTGTCATGC 59.088 36.000 0.00 0.00 36.45 4.06
561 563 5.940192 TCGAAATAACAAAGTGTCATGCT 57.060 34.783 0.00 0.00 0.00 3.79
562 564 5.927030 TCGAAATAACAAAGTGTCATGCTC 58.073 37.500 0.00 0.00 0.00 4.26
565 567 5.536554 AATAACAAAGTGTCATGCTCTCG 57.463 39.130 0.00 0.00 0.00 4.04
566 568 1.151668 ACAAAGTGTCATGCTCTCGC 58.848 50.000 0.00 0.00 0.00 5.03
568 570 0.322975 AAAGTGTCATGCTCTCGCCT 59.677 50.000 0.00 0.00 34.43 5.52
569 571 0.108424 AAGTGTCATGCTCTCGCCTC 60.108 55.000 0.00 0.00 34.43 4.70
571 573 0.805322 GTGTCATGCTCTCGCCTCAG 60.805 60.000 0.00 0.00 34.43 3.35
595 1833 0.607489 ATTTCCGCAGAAGCTGTGCT 60.607 50.000 16.93 0.00 40.25 4.40
597 1835 2.357881 CCGCAGAAGCTGTGCTCA 60.358 61.111 16.93 0.00 40.25 4.26
598 1836 2.675056 CCGCAGAAGCTGTGCTCAC 61.675 63.158 16.93 0.00 40.25 3.51
599 1837 2.858868 GCAGAAGCTGTGCTCACG 59.141 61.111 12.97 0.00 38.25 4.35
600 1838 1.958205 GCAGAAGCTGTGCTCACGT 60.958 57.895 12.97 0.00 38.25 4.49
601 1839 1.858041 CAGAAGCTGTGCTCACGTG 59.142 57.895 9.94 9.94 38.25 4.49
615 1854 0.375454 CACGTGTCTTTGTGCGGAAA 59.625 50.000 7.58 0.00 0.00 3.13
641 1880 3.842126 CACCGTCATGCTCACGCG 61.842 66.667 3.53 3.53 39.65 6.01
651 1890 3.093278 CTCACGCGCCAGATTTCC 58.907 61.111 5.73 0.00 0.00 3.13
675 1917 2.413453 GCCCTTCGCAAATATCTCGATC 59.587 50.000 0.00 0.00 37.47 3.69
678 1920 4.151335 CCCTTCGCAAATATCTCGATCAAG 59.849 45.833 0.00 0.00 31.96 3.02
720 1987 3.404564 CGTCCGAAAAACTAAATGCTCG 58.595 45.455 0.00 0.00 0.00 5.03
728 1995 4.766404 AAACTAAATGCTCGGTTTCCAG 57.234 40.909 0.00 0.00 0.00 3.86
748 2015 5.291614 TCCAGTTGTTACTTGTTGTTACGTC 59.708 40.000 0.00 0.00 31.47 4.34
768 2035 0.458197 ACCAACAACAACGACGACGA 60.458 50.000 15.32 0.00 42.66 4.20
769 2036 0.043652 CCAACAACAACGACGACGAC 60.044 55.000 15.32 0.00 42.66 4.34
770 2037 0.379760 CAACAACAACGACGACGACG 60.380 55.000 17.60 17.60 42.66 5.12
829 2096 6.471233 ACCCAGAAAGAAAAGAAAAGAAGG 57.529 37.500 0.00 0.00 0.00 3.46
914 2181 2.708386 ACAGCTAGACAACACTCGTC 57.292 50.000 0.00 0.00 0.00 4.20
924 2191 1.787155 CAACACTCGTCTTCTCCGTTG 59.213 52.381 0.00 0.00 0.00 4.10
994 2276 3.518998 CGTCACTCGATCGGGCCT 61.519 66.667 16.63 0.00 42.86 5.19
1587 2896 2.314071 TCGGGGACAGGTTTAAGAGA 57.686 50.000 0.00 0.00 0.00 3.10
1726 3035 1.371558 GAGGAGAACCACCGCAAGT 59.628 57.895 0.00 0.00 38.94 3.16
1942 3271 5.691754 GCTCCTTTGTTTCACAATACTTTGG 59.308 40.000 0.00 0.00 38.00 3.28
1943 3272 6.460953 GCTCCTTTGTTTCACAATACTTTGGA 60.461 38.462 0.00 0.00 38.00 3.53
1944 3273 7.038154 TCCTTTGTTTCACAATACTTTGGAG 57.962 36.000 0.00 0.00 38.00 3.86
1947 3276 7.978975 CCTTTGTTTCACAATACTTTGGAGAAA 59.021 33.333 0.00 0.00 38.00 2.52
1948 3277 8.925161 TTTGTTTCACAATACTTTGGAGAAAG 57.075 30.769 8.08 0.00 40.09 2.62
1949 3278 7.038154 TGTTTCACAATACTTTGGAGAAAGG 57.962 36.000 0.00 0.00 42.66 3.11
1951 3280 6.633500 TTCACAATACTTTGGAGAAAGGTG 57.367 37.500 0.00 0.00 42.66 4.00
1955 3284 5.531287 ACAATACTTTGGAGAAAGGTGTGAC 59.469 40.000 0.00 0.00 42.66 3.67
1957 3286 3.545703 ACTTTGGAGAAAGGTGTGACAG 58.454 45.455 0.00 0.00 42.66 3.51
1958 3287 3.054361 ACTTTGGAGAAAGGTGTGACAGT 60.054 43.478 0.00 0.00 42.66 3.55
1959 3288 2.910688 TGGAGAAAGGTGTGACAGTC 57.089 50.000 0.00 0.00 0.00 3.51
1960 3289 1.416401 TGGAGAAAGGTGTGACAGTCC 59.584 52.381 0.00 0.00 0.00 3.85
1961 3290 1.694696 GGAGAAAGGTGTGACAGTCCT 59.305 52.381 0.00 0.00 0.00 3.85
1963 3292 2.630580 GAGAAAGGTGTGACAGTCCTCT 59.369 50.000 0.00 0.00 0.00 3.69
1964 3293 2.630580 AGAAAGGTGTGACAGTCCTCTC 59.369 50.000 0.00 0.00 0.00 3.20
2063 4563 4.873746 TCTTCGGTTCACTCTGAATTCT 57.126 40.909 7.05 0.00 38.79 2.40
2107 4609 8.870075 ATTCCCTATTATTCTAGGATTTGCAC 57.130 34.615 0.00 0.00 40.76 4.57
2309 4864 2.878406 ACAAGCTGAAGTACGCAACAAT 59.122 40.909 0.00 0.00 0.00 2.71
2316 4871 4.130857 TGAAGTACGCAACAATCTCCAAA 58.869 39.130 0.00 0.00 0.00 3.28
2517 5072 3.691297 ATCGGCCGGGACCCTAAGT 62.691 63.158 27.83 0.00 0.00 2.24
2609 5164 5.075858 ACTTTGAATACATACCGTTCGGA 57.924 39.130 18.28 2.32 0.00 4.55
2681 5236 0.106708 TTGTGCTCGCCTCACTTCTT 59.893 50.000 0.00 0.00 35.58 2.52
2799 5354 3.657448 CTGCACGCCGTGGTCCATA 62.657 63.158 20.07 0.00 33.64 2.74
2899 5457 4.319477 CCTTGGTCAAATTGTCAGTGTACG 60.319 45.833 0.00 0.00 0.00 3.67
2934 5492 2.887152 GACTGCCTTGTCAGGTGAATTT 59.113 45.455 0.00 0.00 43.18 1.82
2935 5493 2.624838 ACTGCCTTGTCAGGTGAATTTG 59.375 45.455 0.00 0.00 43.18 2.32
2956 5555 3.244561 TGAGGTCCTCAAACTTGGATGTC 60.245 47.826 19.75 0.00 37.57 3.06
2960 5559 4.324254 GGTCCTCAAACTTGGATGTCCATA 60.324 45.833 1.98 0.00 46.97 2.74
2964 5563 7.556275 GTCCTCAAACTTGGATGTCCATATTAA 59.444 37.037 1.98 0.00 46.97 1.40
2971 5570 7.836842 ACTTGGATGTCCATATTAAAACAACC 58.163 34.615 1.98 0.00 46.97 3.77
2978 5577 8.415950 TGTCCATATTAAAACAACCATCAGTT 57.584 30.769 0.00 0.00 40.16 3.16
3239 5843 3.094484 TGGAAAACACAAGTTCACCCT 57.906 42.857 0.00 0.00 36.84 4.34
3288 5892 0.179081 GTAGCCATTGGTCTCGTCCC 60.179 60.000 4.26 0.00 0.00 4.46
3408 6043 3.642741 AACCCATCCCGCCTCTCCT 62.643 63.158 0.00 0.00 0.00 3.69
3435 6070 2.397754 CCATCCAATGCACGCGTCA 61.398 57.895 9.86 11.59 0.00 4.35
3494 6129 0.521242 GGTCAACATTGATGTCGCGC 60.521 55.000 0.00 0.00 40.80 6.86
3586 8094 2.415893 CGCATCCCAAGAAATCAACACC 60.416 50.000 0.00 0.00 0.00 4.16
3635 8143 2.185867 GTCCGTTCGCATGGCCTA 59.814 61.111 3.32 0.00 0.00 3.93
3667 8175 1.167781 TATGTCGTGCTCCGGCGATA 61.168 55.000 9.30 3.31 46.52 2.92
3719 8227 1.358445 ACCTACGAGTCCCTTCTCCTT 59.642 52.381 0.00 0.00 0.00 3.36
3744 8252 0.458716 GTTCTTCCTCCTTCGGCGAG 60.459 60.000 10.46 4.48 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.398696 TACCCGAGTTGCCATGTGTT 59.601 50.000 0.00 0.00 0.00 3.32
2 3 1.199097 GTTTACCCGAGTTGCCATGTG 59.801 52.381 0.00 0.00 0.00 3.21
3 4 1.202830 TGTTTACCCGAGTTGCCATGT 60.203 47.619 0.00 0.00 0.00 3.21
5 6 2.279935 TTGTTTACCCGAGTTGCCAT 57.720 45.000 0.00 0.00 0.00 4.40
6 7 2.054232 TTTGTTTACCCGAGTTGCCA 57.946 45.000 0.00 0.00 0.00 4.92
7 8 3.067040 TCTTTTTGTTTACCCGAGTTGCC 59.933 43.478 0.00 0.00 0.00 4.52
8 9 4.201980 ACTCTTTTTGTTTACCCGAGTTGC 60.202 41.667 0.00 0.00 0.00 4.17
9 10 5.494632 ACTCTTTTTGTTTACCCGAGTTG 57.505 39.130 0.00 0.00 0.00 3.16
10 11 5.416639 ACAACTCTTTTTGTTTACCCGAGTT 59.583 36.000 0.00 0.00 39.89 3.01
11 12 4.945543 ACAACTCTTTTTGTTTACCCGAGT 59.054 37.500 0.00 0.00 36.22 4.18
12 13 5.065474 TGACAACTCTTTTTGTTTACCCGAG 59.935 40.000 0.00 0.00 39.88 4.63
13 14 4.942483 TGACAACTCTTTTTGTTTACCCGA 59.058 37.500 0.00 0.00 39.88 5.14
14 15 5.032220 GTGACAACTCTTTTTGTTTACCCG 58.968 41.667 0.00 0.00 39.88 5.28
15 16 5.126545 AGGTGACAACTCTTTTTGTTTACCC 59.873 40.000 14.60 4.18 42.36 3.69
16 17 6.033966 CAGGTGACAACTCTTTTTGTTTACC 58.966 40.000 12.08 12.08 42.06 2.85
17 18 5.515270 GCAGGTGACAACTCTTTTTGTTTAC 59.485 40.000 0.00 0.00 39.88 2.01
18 19 5.417580 AGCAGGTGACAACTCTTTTTGTTTA 59.582 36.000 0.00 0.00 39.88 2.01
19 20 4.220602 AGCAGGTGACAACTCTTTTTGTTT 59.779 37.500 0.00 0.00 39.88 2.83
20 21 3.763897 AGCAGGTGACAACTCTTTTTGTT 59.236 39.130 0.00 0.00 39.88 2.83
21 22 3.356290 AGCAGGTGACAACTCTTTTTGT 58.644 40.909 0.00 0.00 42.55 2.83
22 23 4.376340 AAGCAGGTGACAACTCTTTTTG 57.624 40.909 0.00 0.00 0.00 2.44
23 24 7.817418 TTATAAGCAGGTGACAACTCTTTTT 57.183 32.000 9.51 3.41 0.00 1.94
24 25 7.817418 TTTATAAGCAGGTGACAACTCTTTT 57.183 32.000 9.51 5.98 0.00 2.27
25 26 7.440523 CTTTATAAGCAGGTGACAACTCTTT 57.559 36.000 9.51 1.99 0.00 2.52
41 42 1.940613 GCCCCGAGTGTGCTTTATAAG 59.059 52.381 0.00 0.00 0.00 1.73
42 43 1.279558 TGCCCCGAGTGTGCTTTATAA 59.720 47.619 0.00 0.00 0.00 0.98
43 44 0.906066 TGCCCCGAGTGTGCTTTATA 59.094 50.000 0.00 0.00 0.00 0.98
44 45 0.392998 CTGCCCCGAGTGTGCTTTAT 60.393 55.000 0.00 0.00 0.00 1.40
45 46 1.003839 CTGCCCCGAGTGTGCTTTA 60.004 57.895 0.00 0.00 0.00 1.85
46 47 2.281761 CTGCCCCGAGTGTGCTTT 60.282 61.111 0.00 0.00 0.00 3.51
47 48 3.120086 AACTGCCCCGAGTGTGCTT 62.120 57.895 0.00 0.00 0.00 3.91
48 49 3.560251 AACTGCCCCGAGTGTGCT 61.560 61.111 0.00 0.00 0.00 4.40
49 50 3.357079 CAACTGCCCCGAGTGTGC 61.357 66.667 0.00 0.00 0.00 4.57
50 51 3.357079 GCAACTGCCCCGAGTGTG 61.357 66.667 0.00 0.00 34.31 3.82
66 67 1.596477 TTTTTGCAACGCCCATGGC 60.596 52.632 6.09 0.58 46.75 4.40
67 68 0.531532 TGTTTTTGCAACGCCCATGG 60.532 50.000 4.14 4.14 0.00 3.66
68 69 0.581053 GTGTTTTTGCAACGCCCATG 59.419 50.000 0.00 0.00 0.00 3.66
69 70 0.176680 TGTGTTTTTGCAACGCCCAT 59.823 45.000 0.00 0.00 0.00 4.00
70 71 0.176680 ATGTGTTTTTGCAACGCCCA 59.823 45.000 0.00 0.00 0.00 5.36
71 72 0.581053 CATGTGTTTTTGCAACGCCC 59.419 50.000 0.00 0.00 0.00 6.13
72 73 0.581053 CCATGTGTTTTTGCAACGCC 59.419 50.000 0.00 0.00 0.00 5.68
73 74 0.042274 GCCATGTGTTTTTGCAACGC 60.042 50.000 0.00 0.00 0.00 4.84
74 75 1.284657 TGCCATGTGTTTTTGCAACG 58.715 45.000 0.00 0.00 0.00 4.10
76 77 2.983229 AGTTGCCATGTGTTTTTGCAA 58.017 38.095 0.00 0.00 39.42 4.08
77 78 2.687700 AGTTGCCATGTGTTTTTGCA 57.312 40.000 0.00 0.00 0.00 4.08
78 79 2.476241 GCTAGTTGCCATGTGTTTTTGC 59.524 45.455 0.00 0.00 35.15 3.68
79 80 3.715495 TGCTAGTTGCCATGTGTTTTTG 58.285 40.909 0.00 0.00 42.00 2.44
80 81 3.799917 GCTGCTAGTTGCCATGTGTTTTT 60.800 43.478 0.00 0.00 42.00 1.94
81 82 2.288395 GCTGCTAGTTGCCATGTGTTTT 60.288 45.455 0.00 0.00 42.00 2.43
82 83 1.270550 GCTGCTAGTTGCCATGTGTTT 59.729 47.619 0.00 0.00 42.00 2.83
83 84 0.883833 GCTGCTAGTTGCCATGTGTT 59.116 50.000 0.00 0.00 42.00 3.32
84 85 0.037303 AGCTGCTAGTTGCCATGTGT 59.963 50.000 0.00 0.00 42.00 3.72
85 86 0.450583 CAGCTGCTAGTTGCCATGTG 59.549 55.000 0.00 0.00 42.00 3.21
86 87 0.679002 CCAGCTGCTAGTTGCCATGT 60.679 55.000 8.66 0.00 42.00 3.21
87 88 0.393402 TCCAGCTGCTAGTTGCCATG 60.393 55.000 8.66 0.00 42.00 3.66
88 89 0.107312 CTCCAGCTGCTAGTTGCCAT 60.107 55.000 8.66 0.00 42.00 4.40
89 90 1.297689 CTCCAGCTGCTAGTTGCCA 59.702 57.895 8.66 0.00 42.00 4.92
90 91 1.023513 CACTCCAGCTGCTAGTTGCC 61.024 60.000 15.16 0.00 42.00 4.52
91 92 0.321122 ACACTCCAGCTGCTAGTTGC 60.321 55.000 15.16 0.00 43.25 4.17
92 93 1.436600 CACACTCCAGCTGCTAGTTG 58.563 55.000 15.16 12.96 0.00 3.16
93 94 0.322975 CCACACTCCAGCTGCTAGTT 59.677 55.000 15.16 6.72 0.00 2.24
94 95 1.548357 CCCACACTCCAGCTGCTAGT 61.548 60.000 8.66 11.16 0.00 2.57
95 96 1.220206 CCCACACTCCAGCTGCTAG 59.780 63.158 8.66 10.46 0.00 3.42
96 97 1.229177 TCCCACACTCCAGCTGCTA 60.229 57.895 8.66 0.00 0.00 3.49
97 98 2.527624 TCCCACACTCCAGCTGCT 60.528 61.111 8.66 0.00 0.00 4.24
98 99 2.046507 CTCCCACACTCCAGCTGC 60.047 66.667 8.66 0.00 0.00 5.25
99 100 1.595882 CTCTCCCACACTCCAGCTG 59.404 63.158 6.78 6.78 0.00 4.24
100 101 1.611851 CCTCTCCCACACTCCAGCT 60.612 63.158 0.00 0.00 0.00 4.24
101 102 1.610673 TCCTCTCCCACACTCCAGC 60.611 63.158 0.00 0.00 0.00 4.85
102 103 0.040351 TCTCCTCTCCCACACTCCAG 59.960 60.000 0.00 0.00 0.00 3.86
103 104 0.487325 TTCTCCTCTCCCACACTCCA 59.513 55.000 0.00 0.00 0.00 3.86
104 105 1.190643 CTTCTCCTCTCCCACACTCC 58.809 60.000 0.00 0.00 0.00 3.85
105 106 1.190643 CCTTCTCCTCTCCCACACTC 58.809 60.000 0.00 0.00 0.00 3.51
106 107 0.252467 CCCTTCTCCTCTCCCACACT 60.252 60.000 0.00 0.00 0.00 3.55
107 108 1.904990 GCCCTTCTCCTCTCCCACAC 61.905 65.000 0.00 0.00 0.00 3.82
108 109 1.613630 GCCCTTCTCCTCTCCCACA 60.614 63.158 0.00 0.00 0.00 4.17
109 110 2.726351 CGCCCTTCTCCTCTCCCAC 61.726 68.421 0.00 0.00 0.00 4.61
110 111 2.364317 CGCCCTTCTCCTCTCCCA 60.364 66.667 0.00 0.00 0.00 4.37
111 112 2.364448 ACGCCCTTCTCCTCTCCC 60.364 66.667 0.00 0.00 0.00 4.30
112 113 1.985116 ACACGCCCTTCTCCTCTCC 60.985 63.158 0.00 0.00 0.00 3.71
113 114 1.216710 CACACGCCCTTCTCCTCTC 59.783 63.158 0.00 0.00 0.00 3.20
114 115 2.286523 CCACACGCCCTTCTCCTCT 61.287 63.158 0.00 0.00 0.00 3.69
115 116 2.266055 CCACACGCCCTTCTCCTC 59.734 66.667 0.00 0.00 0.00 3.71
116 117 3.322466 CCCACACGCCCTTCTCCT 61.322 66.667 0.00 0.00 0.00 3.69
117 118 3.637273 ACCCACACGCCCTTCTCC 61.637 66.667 0.00 0.00 0.00 3.71
118 119 2.358737 CACCCACACGCCCTTCTC 60.359 66.667 0.00 0.00 0.00 2.87
119 120 2.847234 TCACCCACACGCCCTTCT 60.847 61.111 0.00 0.00 0.00 2.85
120 121 2.185310 ATCTCACCCACACGCCCTTC 62.185 60.000 0.00 0.00 0.00 3.46
121 122 2.224159 ATCTCACCCACACGCCCTT 61.224 57.895 0.00 0.00 0.00 3.95
122 123 2.607750 ATCTCACCCACACGCCCT 60.608 61.111 0.00 0.00 0.00 5.19
123 124 2.436646 CATCTCACCCACACGCCC 60.437 66.667 0.00 0.00 0.00 6.13
124 125 2.436646 CCATCTCACCCACACGCC 60.437 66.667 0.00 0.00 0.00 5.68
125 126 3.127533 GCCATCTCACCCACACGC 61.128 66.667 0.00 0.00 0.00 5.34
126 127 0.888736 TTTGCCATCTCACCCACACG 60.889 55.000 0.00 0.00 0.00 4.49
127 128 1.203052 CATTTGCCATCTCACCCACAC 59.797 52.381 0.00 0.00 0.00 3.82
128 129 1.548081 CATTTGCCATCTCACCCACA 58.452 50.000 0.00 0.00 0.00 4.17
129 130 0.174162 GCATTTGCCATCTCACCCAC 59.826 55.000 0.00 0.00 34.31 4.61
130 131 2.582272 GCATTTGCCATCTCACCCA 58.418 52.632 0.00 0.00 34.31 4.51
141 142 1.005867 CTGGTGTGTGGGCATTTGC 60.006 57.895 0.00 0.00 41.14 3.68
142 143 1.005867 GCTGGTGTGTGGGCATTTG 60.006 57.895 0.00 0.00 0.00 2.32
143 144 2.209315 GGCTGGTGTGTGGGCATTT 61.209 57.895 0.00 0.00 0.00 2.32
144 145 2.601367 GGCTGGTGTGTGGGCATT 60.601 61.111 0.00 0.00 0.00 3.56
145 146 2.661574 AAAGGCTGGTGTGTGGGCAT 62.662 55.000 0.00 0.00 0.00 4.40
146 147 3.372422 AAAGGCTGGTGTGTGGGCA 62.372 57.895 0.00 0.00 0.00 5.36
147 148 2.521708 AAAGGCTGGTGTGTGGGC 60.522 61.111 0.00 0.00 0.00 5.36
148 149 1.455587 ACAAAGGCTGGTGTGTGGG 60.456 57.895 3.45 0.00 0.00 4.61
149 150 1.735360 CACAAAGGCTGGTGTGTGG 59.265 57.895 18.72 0.00 40.22 4.17
150 151 1.066257 GCACAAAGGCTGGTGTGTG 59.934 57.895 24.43 19.11 45.60 3.82
151 152 2.480610 CGCACAAAGGCTGGTGTGT 61.481 57.895 24.43 9.65 45.60 3.72
152 153 2.332514 CGCACAAAGGCTGGTGTG 59.667 61.111 21.38 21.38 46.40 3.82
153 154 2.124320 ACGCACAAAGGCTGGTGT 60.124 55.556 17.57 9.34 37.35 4.16
154 155 2.186160 TCACGCACAAAGGCTGGTG 61.186 57.895 13.53 13.53 38.05 4.17
155 156 2.186826 GTCACGCACAAAGGCTGGT 61.187 57.895 0.00 0.00 0.00 4.00
156 157 1.893808 AGTCACGCACAAAGGCTGG 60.894 57.895 0.00 0.00 0.00 4.85
157 158 1.159713 TCAGTCACGCACAAAGGCTG 61.160 55.000 0.00 0.00 0.00 4.85
158 159 0.463654 TTCAGTCACGCACAAAGGCT 60.464 50.000 0.00 0.00 0.00 4.58
159 160 0.380378 TTTCAGTCACGCACAAAGGC 59.620 50.000 0.00 0.00 0.00 4.35
160 161 2.097466 AGTTTTCAGTCACGCACAAAGG 59.903 45.455 0.00 0.00 0.00 3.11
161 162 3.100817 CAGTTTTCAGTCACGCACAAAG 58.899 45.455 0.00 0.00 0.00 2.77
162 163 2.159448 CCAGTTTTCAGTCACGCACAAA 60.159 45.455 0.00 0.00 0.00 2.83
163 164 1.400142 CCAGTTTTCAGTCACGCACAA 59.600 47.619 0.00 0.00 0.00 3.33
164 165 1.013596 CCAGTTTTCAGTCACGCACA 58.986 50.000 0.00 0.00 0.00 4.57
165 166 1.014352 ACCAGTTTTCAGTCACGCAC 58.986 50.000 0.00 0.00 0.00 5.34
166 167 1.013596 CACCAGTTTTCAGTCACGCA 58.986 50.000 0.00 0.00 0.00 5.24
167 168 1.014352 ACACCAGTTTTCAGTCACGC 58.986 50.000 0.00 0.00 0.00 5.34
168 169 2.006888 ACACACCAGTTTTCAGTCACG 58.993 47.619 0.00 0.00 0.00 4.35
169 170 2.097466 CCACACACCAGTTTTCAGTCAC 59.903 50.000 0.00 0.00 0.00 3.67
170 171 2.364632 CCACACACCAGTTTTCAGTCA 58.635 47.619 0.00 0.00 0.00 3.41
171 172 1.676006 CCCACACACCAGTTTTCAGTC 59.324 52.381 0.00 0.00 0.00 3.51
172 173 1.005450 ACCCACACACCAGTTTTCAGT 59.995 47.619 0.00 0.00 0.00 3.41
173 174 1.405105 CACCCACACACCAGTTTTCAG 59.595 52.381 0.00 0.00 0.00 3.02
174 175 1.004862 TCACCCACACACCAGTTTTCA 59.995 47.619 0.00 0.00 0.00 2.69
175 176 1.757682 TCACCCACACACCAGTTTTC 58.242 50.000 0.00 0.00 0.00 2.29
176 177 1.822371 GTTCACCCACACACCAGTTTT 59.178 47.619 0.00 0.00 0.00 2.43
177 178 1.005450 AGTTCACCCACACACCAGTTT 59.995 47.619 0.00 0.00 0.00 2.66
178 179 0.623723 AGTTCACCCACACACCAGTT 59.376 50.000 0.00 0.00 0.00 3.16
179 180 0.107214 CAGTTCACCCACACACCAGT 60.107 55.000 0.00 0.00 0.00 4.00
180 181 1.447317 GCAGTTCACCCACACACCAG 61.447 60.000 0.00 0.00 0.00 4.00
181 182 1.453015 GCAGTTCACCCACACACCA 60.453 57.895 0.00 0.00 0.00 4.17
182 183 0.107831 TAGCAGTTCACCCACACACC 59.892 55.000 0.00 0.00 0.00 4.16
183 184 1.961793 TTAGCAGTTCACCCACACAC 58.038 50.000 0.00 0.00 0.00 3.82
184 185 2.294074 GTTTAGCAGTTCACCCACACA 58.706 47.619 0.00 0.00 0.00 3.72
185 186 1.263217 CGTTTAGCAGTTCACCCACAC 59.737 52.381 0.00 0.00 0.00 3.82
186 187 1.588674 CGTTTAGCAGTTCACCCACA 58.411 50.000 0.00 0.00 0.00 4.17
199 200 2.322081 CCGGTGTGTGGGCGTTTAG 61.322 63.158 0.00 0.00 0.00 1.85
200 201 2.280933 CCGGTGTGTGGGCGTTTA 60.281 61.111 0.00 0.00 0.00 2.01
216 217 2.414658 TTTTACCACACGGAGGGGCC 62.415 60.000 0.00 0.00 35.59 5.80
217 218 1.073548 TTTTACCACACGGAGGGGC 59.926 57.895 0.00 0.00 35.59 5.80
218 219 0.108963 TGTTTTACCACACGGAGGGG 59.891 55.000 0.00 0.00 35.59 4.79
219 220 1.071071 TCTGTTTTACCACACGGAGGG 59.929 52.381 0.00 0.00 35.59 4.30
220 221 2.536761 TCTGTTTTACCACACGGAGG 57.463 50.000 0.00 0.00 35.59 4.30
221 222 3.186409 CACATCTGTTTTACCACACGGAG 59.814 47.826 0.00 0.00 31.74 4.63
222 223 3.135225 CACATCTGTTTTACCACACGGA 58.865 45.455 0.00 0.00 35.59 4.69
223 224 2.875933 ACACATCTGTTTTACCACACGG 59.124 45.455 0.00 0.00 38.77 4.94
224 225 3.303725 CCACACATCTGTTTTACCACACG 60.304 47.826 0.00 0.00 0.00 4.49
225 226 3.004315 CCCACACATCTGTTTTACCACAC 59.996 47.826 0.00 0.00 0.00 3.82
226 227 3.218453 CCCACACATCTGTTTTACCACA 58.782 45.455 0.00 0.00 0.00 4.17
227 228 3.004315 CACCCACACATCTGTTTTACCAC 59.996 47.826 0.00 0.00 0.00 4.16
228 229 3.117851 TCACCCACACATCTGTTTTACCA 60.118 43.478 0.00 0.00 0.00 3.25
229 230 3.482436 TCACCCACACATCTGTTTTACC 58.518 45.455 0.00 0.00 0.00 2.85
230 231 4.578928 AGTTCACCCACACATCTGTTTTAC 59.421 41.667 0.00 0.00 0.00 2.01
231 232 4.787551 AGTTCACCCACACATCTGTTTTA 58.212 39.130 0.00 0.00 0.00 1.52
232 233 3.631250 AGTTCACCCACACATCTGTTTT 58.369 40.909 0.00 0.00 0.00 2.43
233 234 3.297134 AGTTCACCCACACATCTGTTT 57.703 42.857 0.00 0.00 0.00 2.83
234 235 4.202461 ACATAGTTCACCCACACATCTGTT 60.202 41.667 0.00 0.00 0.00 3.16
235 236 3.327757 ACATAGTTCACCCACACATCTGT 59.672 43.478 0.00 0.00 0.00 3.41
236 237 3.935203 GACATAGTTCACCCACACATCTG 59.065 47.826 0.00 0.00 0.00 2.90
237 238 3.582647 TGACATAGTTCACCCACACATCT 59.417 43.478 0.00 0.00 0.00 2.90
238 239 3.684788 GTGACATAGTTCACCCACACATC 59.315 47.826 0.00 0.00 40.15 3.06
239 240 3.072330 TGTGACATAGTTCACCCACACAT 59.928 43.478 0.00 0.00 44.63 3.21
240 241 2.436173 TGTGACATAGTTCACCCACACA 59.564 45.455 0.00 0.00 44.63 3.72
241 242 2.806244 GTGTGACATAGTTCACCCACAC 59.194 50.000 0.00 0.00 44.63 3.82
242 243 2.436173 TGTGTGACATAGTTCACCCACA 59.564 45.455 0.00 0.00 44.63 4.17
243 244 2.806244 GTGTGTGACATAGTTCACCCAC 59.194 50.000 3.63 3.63 44.20 4.61
244 245 2.224426 GGTGTGTGACATAGTTCACCCA 60.224 50.000 10.27 0.00 44.63 4.51
245 246 2.224426 TGGTGTGTGACATAGTTCACCC 60.224 50.000 16.58 0.00 44.63 4.61
246 247 2.806244 GTGGTGTGTGACATAGTTCACC 59.194 50.000 13.53 13.53 44.63 4.02
247 248 3.247648 GTGTGGTGTGTGACATAGTTCAC 59.752 47.826 0.00 0.00 45.34 3.18
248 249 3.118592 TGTGTGGTGTGTGACATAGTTCA 60.119 43.478 0.00 0.00 0.00 3.18
249 250 3.247648 GTGTGTGGTGTGTGACATAGTTC 59.752 47.826 0.00 0.00 0.00 3.01
250 251 3.202906 GTGTGTGGTGTGTGACATAGTT 58.797 45.455 0.00 0.00 0.00 2.24
251 252 2.169561 TGTGTGTGGTGTGTGACATAGT 59.830 45.455 0.00 0.00 0.00 2.12
252 253 2.543848 GTGTGTGTGGTGTGTGACATAG 59.456 50.000 0.00 0.00 0.00 2.23
253 254 2.556257 GTGTGTGTGGTGTGTGACATA 58.444 47.619 0.00 0.00 0.00 2.29
254 255 1.378531 GTGTGTGTGGTGTGTGACAT 58.621 50.000 0.00 0.00 0.00 3.06
255 256 1.016653 CGTGTGTGTGGTGTGTGACA 61.017 55.000 0.00 0.00 0.00 3.58
256 257 1.017177 ACGTGTGTGTGGTGTGTGAC 61.017 55.000 0.00 0.00 0.00 3.67
257 258 0.738063 GACGTGTGTGTGGTGTGTGA 60.738 55.000 0.00 0.00 0.00 3.58
258 259 0.739462 AGACGTGTGTGTGGTGTGTG 60.739 55.000 0.00 0.00 0.00 3.82
259 260 0.036765 AAGACGTGTGTGTGGTGTGT 60.037 50.000 0.00 0.00 0.00 3.72
260 261 0.373370 CAAGACGTGTGTGTGGTGTG 59.627 55.000 0.00 0.00 0.00 3.82
261 262 0.036765 ACAAGACGTGTGTGTGGTGT 60.037 50.000 0.00 0.00 39.72 4.16
262 263 0.650512 GACAAGACGTGTGTGTGGTG 59.349 55.000 6.22 0.00 41.96 4.17
263 264 0.535335 AGACAAGACGTGTGTGTGGT 59.465 50.000 6.22 0.00 41.96 4.16
264 265 1.651987 AAGACAAGACGTGTGTGTGG 58.348 50.000 6.22 0.00 41.96 4.17
265 266 2.215587 CGTAAGACAAGACGTGTGTGTG 59.784 50.000 6.22 0.00 41.96 3.82
266 267 2.456989 CGTAAGACAAGACGTGTGTGT 58.543 47.619 6.22 3.57 41.96 3.72
273 274 1.710013 ATGCCACGTAAGACAAGACG 58.290 50.000 0.00 0.00 44.57 4.18
274 275 4.106029 TCTATGCCACGTAAGACAAGAC 57.894 45.455 0.00 0.00 43.62 3.01
275 276 4.794278 TTCTATGCCACGTAAGACAAGA 57.206 40.909 0.00 0.00 43.62 3.02
276 277 5.390567 GGTTTTCTATGCCACGTAAGACAAG 60.391 44.000 0.00 0.00 43.62 3.16
277 278 4.453136 GGTTTTCTATGCCACGTAAGACAA 59.547 41.667 0.00 0.00 43.62 3.18
278 279 3.998341 GGTTTTCTATGCCACGTAAGACA 59.002 43.478 0.00 0.00 43.62 3.41
279 280 3.998341 TGGTTTTCTATGCCACGTAAGAC 59.002 43.478 0.00 0.00 43.62 3.01
280 281 4.250464 CTGGTTTTCTATGCCACGTAAGA 58.750 43.478 0.00 0.00 43.62 2.10
281 282 6.207491 GGCTGGTTTTCTATGCCACGTAAG 62.207 50.000 0.00 0.00 42.79 2.34
282 283 2.745281 GCTGGTTTTCTATGCCACGTAA 59.255 45.455 0.00 0.00 0.00 3.18
283 284 2.352388 GCTGGTTTTCTATGCCACGTA 58.648 47.619 0.00 0.00 0.00 3.57
284 285 1.165270 GCTGGTTTTCTATGCCACGT 58.835 50.000 0.00 0.00 0.00 4.49
285 286 0.451783 GGCTGGTTTTCTATGCCACG 59.548 55.000 0.00 0.00 42.79 4.94
288 289 2.128771 TCTGGCTGGTTTTCTATGCC 57.871 50.000 0.00 0.00 43.49 4.40
289 290 3.445096 ACAATCTGGCTGGTTTTCTATGC 59.555 43.478 0.00 0.00 0.00 3.14
290 291 4.676196 GCACAATCTGGCTGGTTTTCTATG 60.676 45.833 0.00 0.00 0.00 2.23
291 292 3.445096 GCACAATCTGGCTGGTTTTCTAT 59.555 43.478 0.00 0.00 0.00 1.98
292 293 2.819608 GCACAATCTGGCTGGTTTTCTA 59.180 45.455 0.00 0.00 0.00 2.10
293 294 1.615392 GCACAATCTGGCTGGTTTTCT 59.385 47.619 0.00 0.00 0.00 2.52
294 295 1.337167 GGCACAATCTGGCTGGTTTTC 60.337 52.381 0.00 0.00 42.36 2.29
295 296 0.681175 GGCACAATCTGGCTGGTTTT 59.319 50.000 0.00 0.00 42.36 2.43
296 297 0.469705 TGGCACAATCTGGCTGGTTT 60.470 50.000 0.00 0.00 45.96 3.27
297 298 1.153524 TGGCACAATCTGGCTGGTT 59.846 52.632 0.00 0.00 45.96 3.67
298 299 2.845784 TGGCACAATCTGGCTGGT 59.154 55.556 0.00 0.00 45.96 4.00
309 310 2.106477 TATGCACGAATCTTGGCACA 57.894 45.000 0.00 0.00 39.34 4.57
310 311 4.811555 TTATATGCACGAATCTTGGCAC 57.188 40.909 0.00 0.00 39.34 5.01
311 312 6.147656 CAGTATTATATGCACGAATCTTGGCA 59.852 38.462 0.00 0.00 41.00 4.92
312 313 6.402550 CCAGTATTATATGCACGAATCTTGGC 60.403 42.308 0.00 0.00 0.00 4.52
313 314 6.873605 TCCAGTATTATATGCACGAATCTTGG 59.126 38.462 0.00 1.49 0.00 3.61
314 315 7.410835 CGTCCAGTATTATATGCACGAATCTTG 60.411 40.741 0.00 0.00 0.00 3.02
315 316 6.586463 CGTCCAGTATTATATGCACGAATCTT 59.414 38.462 0.00 0.00 0.00 2.40
316 317 6.072119 TCGTCCAGTATTATATGCACGAATCT 60.072 38.462 0.00 0.00 32.44 2.40
317 318 6.090783 TCGTCCAGTATTATATGCACGAATC 58.909 40.000 0.00 0.00 32.44 2.52
318 319 6.020971 TCGTCCAGTATTATATGCACGAAT 57.979 37.500 0.00 0.00 32.44 3.34
319 320 5.441709 TCGTCCAGTATTATATGCACGAA 57.558 39.130 0.00 0.00 32.44 3.85
320 321 5.182380 TCATCGTCCAGTATTATATGCACGA 59.818 40.000 0.00 0.00 39.17 4.35
321 322 5.399013 TCATCGTCCAGTATTATATGCACG 58.601 41.667 0.00 0.00 0.00 5.34
322 323 8.926715 TTATCATCGTCCAGTATTATATGCAC 57.073 34.615 0.00 0.00 0.00 4.57
326 327 9.249457 CGCATTTATCATCGTCCAGTATTATAT 57.751 33.333 0.00 0.00 0.00 0.86
327 328 8.248253 ACGCATTTATCATCGTCCAGTATTATA 58.752 33.333 0.00 0.00 0.00 0.98
328 329 7.063426 CACGCATTTATCATCGTCCAGTATTAT 59.937 37.037 0.00 0.00 32.38 1.28
329 330 6.364976 CACGCATTTATCATCGTCCAGTATTA 59.635 38.462 0.00 0.00 32.38 0.98
330 331 5.177511 CACGCATTTATCATCGTCCAGTATT 59.822 40.000 0.00 0.00 32.38 1.89
331 332 4.686091 CACGCATTTATCATCGTCCAGTAT 59.314 41.667 0.00 0.00 32.38 2.12
332 333 4.048504 CACGCATTTATCATCGTCCAGTA 58.951 43.478 0.00 0.00 32.38 2.74
333 334 2.866156 CACGCATTTATCATCGTCCAGT 59.134 45.455 0.00 0.00 32.38 4.00
334 335 2.866156 ACACGCATTTATCATCGTCCAG 59.134 45.455 0.00 0.00 32.38 3.86
335 336 2.607180 CACACGCATTTATCATCGTCCA 59.393 45.455 0.00 0.00 32.38 4.02
336 337 2.032894 CCACACGCATTTATCATCGTCC 60.033 50.000 0.00 0.00 32.38 4.79
337 338 2.607635 ACCACACGCATTTATCATCGTC 59.392 45.455 0.00 0.00 32.38 4.20
338 339 2.607635 GACCACACGCATTTATCATCGT 59.392 45.455 0.00 0.00 35.35 3.73
339 340 2.347568 CGACCACACGCATTTATCATCG 60.348 50.000 0.00 0.00 0.00 3.84
340 341 2.863740 TCGACCACACGCATTTATCATC 59.136 45.455 0.00 0.00 0.00 2.92
341 342 2.866156 CTCGACCACACGCATTTATCAT 59.134 45.455 0.00 0.00 0.00 2.45
342 343 2.094442 TCTCGACCACACGCATTTATCA 60.094 45.455 0.00 0.00 0.00 2.15
343 344 2.536365 TCTCGACCACACGCATTTATC 58.464 47.619 0.00 0.00 0.00 1.75
344 345 2.665649 TCTCGACCACACGCATTTAT 57.334 45.000 0.00 0.00 0.00 1.40
345 346 2.267426 CATCTCGACCACACGCATTTA 58.733 47.619 0.00 0.00 0.00 1.40
346 347 1.078709 CATCTCGACCACACGCATTT 58.921 50.000 0.00 0.00 0.00 2.32
347 348 0.740868 CCATCTCGACCACACGCATT 60.741 55.000 0.00 0.00 0.00 3.56
348 349 1.153568 CCATCTCGACCACACGCAT 60.154 57.895 0.00 0.00 0.00 4.73
349 350 2.261361 CCATCTCGACCACACGCA 59.739 61.111 0.00 0.00 0.00 5.24
350 351 1.805945 GACCATCTCGACCACACGC 60.806 63.158 0.00 0.00 0.00 5.34
351 352 0.038618 TTGACCATCTCGACCACACG 60.039 55.000 0.00 0.00 0.00 4.49
352 353 1.429463 GTTGACCATCTCGACCACAC 58.571 55.000 0.00 0.00 0.00 3.82
353 354 0.038618 CGTTGACCATCTCGACCACA 60.039 55.000 0.00 0.00 29.97 4.17
354 355 1.352156 GCGTTGACCATCTCGACCAC 61.352 60.000 0.00 0.00 29.97 4.16
355 356 1.080093 GCGTTGACCATCTCGACCA 60.080 57.895 0.00 0.00 29.97 4.02
356 357 1.810030 GGCGTTGACCATCTCGACC 60.810 63.158 0.00 0.00 29.97 4.79
357 358 1.810030 GGGCGTTGACCATCTCGAC 60.810 63.158 0.00 0.00 0.00 4.20
358 359 2.279810 TGGGCGTTGACCATCTCGA 61.280 57.895 0.00 0.00 34.69 4.04
359 360 2.100631 GTGGGCGTTGACCATCTCG 61.101 63.158 0.00 0.00 45.49 4.04
360 361 1.003839 TGTGGGCGTTGACCATCTC 60.004 57.895 0.00 0.00 45.49 2.75
361 362 1.302511 GTGTGGGCGTTGACCATCT 60.303 57.895 0.00 0.00 45.49 2.90
362 363 2.677003 CGTGTGGGCGTTGACCATC 61.677 63.158 0.00 0.00 45.49 3.51
363 364 2.668212 CGTGTGGGCGTTGACCAT 60.668 61.111 0.00 0.00 45.49 3.55
364 365 4.164087 ACGTGTGGGCGTTGACCA 62.164 61.111 0.00 0.00 43.04 4.02
365 366 3.645975 CACGTGTGGGCGTTGACC 61.646 66.667 7.58 0.00 43.83 4.02
366 367 2.893404 ACACGTGTGGGCGTTGAC 60.893 61.111 22.71 0.00 43.83 3.18
367 368 2.892914 CACACGTGTGGGCGTTGA 60.893 61.111 35.65 0.00 43.83 3.18
379 380 2.312348 GAAAATGTTAACGCCCACACG 58.688 47.619 0.26 0.00 39.50 4.49
380 381 2.287129 ACGAAAATGTTAACGCCCACAC 60.287 45.455 0.26 0.00 0.00 3.82
381 382 1.948145 ACGAAAATGTTAACGCCCACA 59.052 42.857 0.26 0.00 0.00 4.17
382 383 2.691984 ACGAAAATGTTAACGCCCAC 57.308 45.000 0.26 0.00 0.00 4.61
383 384 3.712091 AAACGAAAATGTTAACGCCCA 57.288 38.095 0.26 0.00 0.00 5.36
384 385 6.693761 AAATAAACGAAAATGTTAACGCCC 57.306 33.333 0.26 0.00 0.00 6.13
393 394 9.511144 GGGGTCAACTATAAATAAACGAAAATG 57.489 33.333 0.00 0.00 0.00 2.32
394 395 9.470399 AGGGGTCAACTATAAATAAACGAAAAT 57.530 29.630 0.00 0.00 0.00 1.82
395 396 8.866970 AGGGGTCAACTATAAATAAACGAAAA 57.133 30.769 0.00 0.00 0.00 2.29
396 397 8.866970 AAGGGGTCAACTATAAATAAACGAAA 57.133 30.769 0.00 0.00 0.00 3.46
397 398 8.866970 AAAGGGGTCAACTATAAATAAACGAA 57.133 30.769 0.00 0.00 0.00 3.85
398 399 8.732531 CAAAAGGGGTCAACTATAAATAAACGA 58.267 33.333 0.00 0.00 0.00 3.85
399 400 8.517056 ACAAAAGGGGTCAACTATAAATAAACG 58.483 33.333 0.00 0.00 0.00 3.60
404 405 9.762381 TCATTACAAAAGGGGTCAACTATAAAT 57.238 29.630 0.00 0.00 0.00 1.40
405 406 9.589461 TTCATTACAAAAGGGGTCAACTATAAA 57.411 29.630 0.00 0.00 0.00 1.40
406 407 9.238368 CTTCATTACAAAAGGGGTCAACTATAA 57.762 33.333 0.00 0.00 0.00 0.98
407 408 7.832187 CCTTCATTACAAAAGGGGTCAACTATA 59.168 37.037 0.00 0.00 38.72 1.31
408 409 6.663523 CCTTCATTACAAAAGGGGTCAACTAT 59.336 38.462 0.00 0.00 38.72 2.12
428 429 2.341846 AGGTTGCGAAGTTTCCTTCA 57.658 45.000 3.63 0.00 46.19 3.02
429 430 3.710326 AAAGGTTGCGAAGTTTCCTTC 57.290 42.857 0.00 0.00 43.09 3.46
430 431 5.585820 TTTAAAGGTTGCGAAGTTTCCTT 57.414 34.783 0.00 0.00 39.75 3.36
464 466 9.162764 AGTTATTTACGAACATCATAAAGCACT 57.837 29.630 0.00 0.00 0.00 4.40
473 475 7.644490 AGCACAAAAGTTATTTACGAACATCA 58.356 30.769 0.00 0.00 0.00 3.07
477 479 9.769093 ATATGAGCACAAAAGTTATTTACGAAC 57.231 29.630 0.00 0.00 0.00 3.95
489 491 8.819974 ACAAAAGTTTGAATATGAGCACAAAAG 58.180 29.630 10.66 0.00 40.55 2.27
490 492 8.602328 CACAAAAGTTTGAATATGAGCACAAAA 58.398 29.630 10.66 0.00 40.55 2.44
491 493 7.254387 GCACAAAAGTTTGAATATGAGCACAAA 60.254 33.333 10.66 0.00 40.55 2.83
492 494 6.200665 GCACAAAAGTTTGAATATGAGCACAA 59.799 34.615 10.66 0.00 40.55 3.33
493 495 5.691305 GCACAAAAGTTTGAATATGAGCACA 59.309 36.000 10.66 0.00 40.55 4.57
494 496 5.922544 AGCACAAAAGTTTGAATATGAGCAC 59.077 36.000 10.66 0.00 40.55 4.40
495 497 6.088016 AGCACAAAAGTTTGAATATGAGCA 57.912 33.333 10.66 0.00 40.55 4.26
496 498 6.151691 TGAGCACAAAAGTTTGAATATGAGC 58.848 36.000 10.66 0.00 40.55 4.26
503 505 8.963130 CGTTAAATATGAGCACAAAAGTTTGAA 58.037 29.630 10.66 0.00 40.55 2.69
504 506 8.346300 TCGTTAAATATGAGCACAAAAGTTTGA 58.654 29.630 10.66 0.00 40.55 2.69
505 507 8.500837 TCGTTAAATATGAGCACAAAAGTTTG 57.499 30.769 2.22 2.22 43.62 2.93
506 508 8.564574 TCTCGTTAAATATGAGCACAAAAGTTT 58.435 29.630 0.00 0.00 39.36 2.66
507 509 8.094798 TCTCGTTAAATATGAGCACAAAAGTT 57.905 30.769 0.00 0.00 39.36 2.66
508 510 7.667043 TCTCGTTAAATATGAGCACAAAAGT 57.333 32.000 0.00 0.00 39.36 2.66
509 511 8.840867 GTTTCTCGTTAAATATGAGCACAAAAG 58.159 33.333 0.00 0.00 39.36 2.27
560 562 4.667262 CGGAAATATATCTGAGGCGAGAG 58.333 47.826 0.00 0.00 0.00 3.20
561 563 3.119459 GCGGAAATATATCTGAGGCGAGA 60.119 47.826 0.00 0.00 0.00 4.04
562 564 3.182967 GCGGAAATATATCTGAGGCGAG 58.817 50.000 0.00 0.00 0.00 5.03
565 567 4.193826 TCTGCGGAAATATATCTGAGGC 57.806 45.455 0.00 0.00 0.00 4.70
566 568 4.629200 GCTTCTGCGGAAATATATCTGAGG 59.371 45.833 9.73 0.00 0.00 3.86
568 570 5.221521 ACAGCTTCTGCGGAAATATATCTGA 60.222 40.000 9.73 0.00 45.42 3.27
569 571 4.993584 ACAGCTTCTGCGGAAATATATCTG 59.006 41.667 9.73 11.23 45.42 2.90
571 573 4.377841 GCACAGCTTCTGCGGAAATATATC 60.378 45.833 9.73 0.00 45.42 1.63
595 1833 0.460459 TTCCGCACAAAGACACGTGA 60.460 50.000 25.01 0.00 35.02 4.35
597 1835 0.655733 CTTTCCGCACAAAGACACGT 59.344 50.000 0.00 0.00 35.67 4.49
598 1836 0.934496 TCTTTCCGCACAAAGACACG 59.066 50.000 3.46 0.00 37.45 4.49
615 1854 1.375140 CATGACGGTGCTGCAGTCT 60.375 57.895 16.64 6.08 41.78 3.24
641 1880 1.077429 AAGGGCGAGGAAATCTGGC 60.077 57.895 0.00 0.00 44.98 4.85
642 1881 0.811616 CGAAGGGCGAGGAAATCTGG 60.812 60.000 0.00 0.00 44.57 3.86
675 1917 0.668706 CGTCTCTCCTGCACCACTTG 60.669 60.000 0.00 0.00 0.00 3.16
678 1920 2.262915 CCGTCTCTCCTGCACCAC 59.737 66.667 0.00 0.00 0.00 4.16
704 1956 5.525199 TGGAAACCGAGCATTTAGTTTTTC 58.475 37.500 0.00 0.00 32.80 2.29
720 1987 5.319140 ACAACAAGTAACAACTGGAAACC 57.681 39.130 0.00 0.00 0.00 3.27
728 1995 5.163874 TGGTGACGTAACAACAAGTAACAAC 60.164 40.000 5.18 0.00 34.39 3.32
748 2015 0.314738 CGTCGTCGTTGTTGTTGGTG 60.315 55.000 0.00 0.00 0.00 4.17
768 2035 2.738521 GCAGTGATGCCGTGTCGT 60.739 61.111 0.00 0.00 0.00 4.34
769 2036 3.490759 GGCAGTGATGCCGTGTCG 61.491 66.667 3.09 0.00 45.79 4.35
829 2096 1.346365 TGCGTACGAGAACAAGATGC 58.654 50.000 21.65 0.00 0.00 3.91
914 2181 5.780984 AGGTTACTAAGTTCAACGGAGAAG 58.219 41.667 0.00 0.00 0.00 2.85
994 2276 2.124193 CCATTGCTCCATGGCGGA 60.124 61.111 6.96 0.00 43.61 5.54
1120 2423 2.515523 GTGCAGGCTGCCGATGAT 60.516 61.111 34.58 0.00 44.23 2.45
1316 2622 2.606108 CGTTCATGATCTTGACGGTGA 58.394 47.619 10.64 0.00 0.00 4.02
1587 2896 0.832135 TCTGCAAGAACTCCTCCCGT 60.832 55.000 0.00 0.00 42.31 5.28
1726 3035 1.135139 GTACTCCATGAGCTCGAAGCA 59.865 52.381 9.64 0.00 45.56 3.91
1800 3115 0.933700 CCTCTCCTCCTTCCTCCTCT 59.066 60.000 0.00 0.00 0.00 3.69
1801 3116 0.930726 TCCTCTCCTCCTTCCTCCTC 59.069 60.000 0.00 0.00 0.00 3.71
1802 3117 0.634465 GTCCTCTCCTCCTTCCTCCT 59.366 60.000 0.00 0.00 0.00 3.69
1942 3271 2.630580 AGAGGACTGTCACACCTTTCTC 59.369 50.000 10.38 4.46 33.89 2.87
1943 3272 2.630580 GAGAGGACTGTCACACCTTTCT 59.369 50.000 10.38 0.98 33.82 2.52
1944 3273 2.630580 AGAGAGGACTGTCACACCTTTC 59.369 50.000 10.38 3.19 35.87 2.62
1947 3276 1.145945 TCAGAGAGGACTGTCACACCT 59.854 52.381 10.38 0.00 38.79 4.00
1948 3277 1.621992 TCAGAGAGGACTGTCACACC 58.378 55.000 10.38 0.00 38.79 4.16
1949 3278 2.560542 ACATCAGAGAGGACTGTCACAC 59.439 50.000 10.38 2.32 38.79 3.82
1951 3280 3.951775 AACATCAGAGAGGACTGTCAC 57.048 47.619 10.38 3.29 38.79 3.67
1955 3284 7.340122 TGAAGTATAACATCAGAGAGGACTG 57.660 40.000 0.00 0.00 39.02 3.51
1957 3286 8.254508 ACTTTGAAGTATAACATCAGAGAGGAC 58.745 37.037 9.06 0.00 37.52 3.85
1958 3287 8.367660 ACTTTGAAGTATAACATCAGAGAGGA 57.632 34.615 9.06 0.00 37.52 3.71
1986 4331 8.135529 AGTTTTGCTTAGGAGTACAAAATGTTC 58.864 33.333 0.00 0.00 42.16 3.18
2107 4609 4.436998 GTCAGCGAGACACCCGGG 62.437 72.222 22.25 22.25 46.77 5.73
2309 4864 6.486657 CAGTCACCTTATGTTTTCTTTGGAGA 59.513 38.462 0.00 0.00 0.00 3.71
2316 4871 5.825593 TCCTCAGTCACCTTATGTTTTCT 57.174 39.130 0.00 0.00 0.00 2.52
2381 4936 1.547372 GCTGGATGCAACCTCATTGTT 59.453 47.619 14.77 0.00 40.77 2.83
2517 5072 4.286813 ACTCCTCAGGATCTTCCCAATA 57.713 45.455 0.00 0.00 37.19 1.90
2609 5164 1.378250 GCACATTCTCCTGCCTGCT 60.378 57.895 0.00 0.00 0.00 4.24
2681 5236 2.038557 GAGCTCCCAGTCAAAGTGGTAA 59.961 50.000 0.87 0.00 36.97 2.85
2799 5354 6.400568 CAAGTGTAAATCAAATCAAGGGCAT 58.599 36.000 0.00 0.00 0.00 4.40
2848 5403 7.863375 ACATAGAAGACACTAATATGCGAGAAC 59.137 37.037 0.00 0.00 0.00 3.01
2899 5457 1.423395 GCAGTCTAGCAGTCACACAC 58.577 55.000 0.00 0.00 0.00 3.82
2934 5492 2.711009 ACATCCAAGTTTGAGGACCTCA 59.289 45.455 20.74 20.74 38.87 3.86
2935 5493 3.339141 GACATCCAAGTTTGAGGACCTC 58.661 50.000 15.13 15.13 36.60 3.85
3099 5700 1.941812 CACTTGTTGGACACGGCTC 59.058 57.895 0.00 0.00 0.00 4.70
3202 5806 7.117667 GTGTTTTCCATTTATTAGCTGGGTTTG 59.882 37.037 0.00 0.00 0.00 2.93
3257 5861 3.573967 CCAATGGCTACTTGTGTTTTCCT 59.426 43.478 0.00 0.00 0.00 3.36
3324 5928 5.642063 CCACCGAGCAGACTAATCTTTTTAA 59.358 40.000 0.00 0.00 30.42 1.52
3408 6043 2.163412 GTGCATTGGATGGAAAAGCGTA 59.837 45.455 0.00 0.00 30.45 4.42
3435 6070 2.961526 ATGAATGCGACGTAGGAAGT 57.038 45.000 0.00 0.00 0.00 3.01
3498 6133 0.747255 CCGTCCTCCTGTTCGATCAT 59.253 55.000 0.00 0.00 0.00 2.45
3502 6137 2.599281 TGCCGTCCTCCTGTTCGA 60.599 61.111 0.00 0.00 0.00 3.71
3508 6143 2.997897 GGTCAGTGCCGTCCTCCT 60.998 66.667 0.00 0.00 0.00 3.69
3547 6339 2.425668 TGCGTCATCCGTATTGAAGAGA 59.574 45.455 0.00 0.00 39.32 3.10
3635 8143 1.542915 ACGACATATATAACCGCGGCT 59.457 47.619 28.58 17.64 0.00 5.52
3667 8175 2.132762 GATTCGGAGTTGTGAACGTGT 58.867 47.619 0.00 0.00 36.23 4.49
3719 8227 1.544691 CGAAGGAGGAAGAACTCGGAA 59.455 52.381 0.00 0.00 38.39 4.30
3791 8299 1.537202 GCGAAGAGCCTGACAAATGTT 59.463 47.619 0.00 0.00 40.81 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.