Multiple sequence alignment - TraesCS6A01G143300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G143300 chr6A 100.000 5056 0 0 1 5056 119749105 119754160 0.000000e+00 9337.0
1 TraesCS6A01G143300 chr6A 78.082 219 39 4 1 218 1588255 1588465 4.110000e-26 130.0
2 TraesCS6A01G143300 chr6B 93.883 1782 64 23 657 2417 184144677 184146434 0.000000e+00 2645.0
3 TraesCS6A01G143300 chr6B 92.641 992 49 5 3382 4367 184147121 184148094 0.000000e+00 1406.0
4 TraesCS6A01G143300 chr6B 97.118 694 17 3 2512 3204 184146433 184147124 0.000000e+00 1168.0
5 TraesCS6A01G143300 chr6B 91.600 250 21 0 402 651 665636086 665636335 3.750000e-91 346.0
6 TraesCS6A01G143300 chr6B 85.000 180 15 4 3203 3378 16643751 16643580 6.730000e-39 172.0
7 TraesCS6A01G143300 chr6B 85.000 180 15 4 3203 3378 16700168 16699997 6.730000e-39 172.0
8 TraesCS6A01G143300 chr6B 90.000 120 8 4 2416 2532 622019978 622020096 8.770000e-33 152.0
9 TraesCS6A01G143300 chr6B 87.952 83 6 2 4478 4556 51735060 51734978 1.500000e-15 95.3
10 TraesCS6A01G143300 chr6D 94.454 1136 45 10 3382 4507 99791920 99793047 0.000000e+00 1733.0
11 TraesCS6A01G143300 chr6D 91.199 1034 49 15 655 1677 99789444 99790446 0.000000e+00 1367.0
12 TraesCS6A01G143300 chr6D 97.724 747 14 2 1673 2417 99790491 99791236 0.000000e+00 1282.0
13 TraesCS6A01G143300 chr6D 96.398 694 19 4 2512 3204 99791235 99791923 0.000000e+00 1138.0
14 TraesCS6A01G143300 chr6D 89.344 610 37 7 51 655 99788823 99789409 0.000000e+00 741.0
15 TraesCS6A01G143300 chr6D 90.741 324 9 3 4552 4855 99793050 99793372 3.640000e-111 412.0
16 TraesCS6A01G143300 chr6D 97.000 200 6 0 4857 5056 99793415 99793614 2.260000e-88 337.0
17 TraesCS6A01G143300 chr6D 86.111 180 13 4 3203 3378 9118262 9118091 3.110000e-42 183.0
18 TraesCS6A01G143300 chr6D 95.283 106 4 1 2408 2513 35700828 35700724 3.130000e-37 167.0
19 TraesCS6A01G143300 chr6D 85.057 87 10 2 4476 4559 291149709 291149795 9.020000e-13 86.1
20 TraesCS6A01G143300 chr1B 93.200 250 17 0 402 651 442201637 442201886 8.000000e-98 368.0
21 TraesCS6A01G143300 chr1B 89.143 175 11 4 3204 3378 322488173 322488007 1.430000e-50 211.0
22 TraesCS6A01G143300 chr3D 92.000 250 20 0 402 651 67724697 67724448 8.050000e-93 351.0
23 TraesCS6A01G143300 chr3D 88.000 175 12 4 3205 3378 597295500 597295666 1.110000e-46 198.0
24 TraesCS6A01G143300 chr3D 92.982 114 6 2 2415 2527 603946160 603946272 1.130000e-36 165.0
25 TraesCS6A01G143300 chr3D 87.209 86 9 2 4470 4555 169888132 169888215 4.170000e-16 97.1
26 TraesCS6A01G143300 chr3D 80.645 124 20 4 2409 2532 448433601 448433720 5.390000e-15 93.5
27 TraesCS6A01G143300 chr3A 92.000 250 20 0 402 651 79450840 79450591 8.050000e-93 351.0
28 TraesCS6A01G143300 chr3A 90.141 71 6 1 1 70 525106234 525106304 1.940000e-14 91.6
29 TraesCS6A01G143300 chr2A 92.000 250 20 0 402 651 699240854 699241103 8.050000e-93 351.0
30 TraesCS6A01G143300 chr2A 89.535 172 9 2 3207 3378 680277465 680277627 5.130000e-50 209.0
31 TraesCS6A01G143300 chr2A 86.826 167 13 2 3213 3379 267885293 267885450 1.450000e-40 178.0
32 TraesCS6A01G143300 chr2A 96.190 105 3 1 2409 2513 14303601 14303498 2.420000e-38 171.0
33 TraesCS6A01G143300 chr2A 82.759 116 17 3 2415 2529 256210422 256210309 3.220000e-17 100.0
34 TraesCS6A01G143300 chr2A 95.082 61 2 1 1 61 771205670 771205611 1.500000e-15 95.3
35 TraesCS6A01G143300 chr2A 90.411 73 3 3 1 71 262216988 262217058 5.390000e-15 93.5
36 TraesCS6A01G143300 chr2A 91.176 68 6 0 1 68 728368541 728368474 5.390000e-15 93.5
37 TraesCS6A01G143300 chr2A 88.889 72 7 1 1 72 136150014 136150084 2.510000e-13 87.9
38 TraesCS6A01G143300 chr1D 91.700 253 21 0 399 651 447564367 447564619 8.050000e-93 351.0
39 TraesCS6A01G143300 chr1D 91.339 254 21 1 399 651 365984066 365984319 3.750000e-91 346.0
40 TraesCS6A01G143300 chr1D 85.393 89 7 3 4478 4560 411756912 411757000 2.510000e-13 87.9
41 TraesCS6A01G143300 chr3B 91.600 250 21 0 402 651 114100224 114100473 3.750000e-91 346.0
42 TraesCS6A01G143300 chr3B 85.393 89 7 3 4476 4558 55741061 55740973 2.510000e-13 87.9
43 TraesCS6A01G143300 chr3B 90.323 62 5 1 4800 4861 30405931 30405991 4.200000e-11 80.5
44 TraesCS6A01G143300 chr3B 85.135 74 7 4 4783 4854 526122082 526122153 7.020000e-09 73.1
45 TraesCS6A01G143300 chr2D 91.270 252 22 0 402 653 558801359 558801610 1.350000e-90 344.0
46 TraesCS6A01G143300 chr2D 96.154 104 2 2 2415 2517 107204079 107204181 8.710000e-38 169.0
47 TraesCS6A01G143300 chr2D 93.878 98 5 1 2416 2513 532876571 532876667 4.080000e-31 147.0
48 TraesCS6A01G143300 chr2D 88.596 114 11 2 2416 2528 584873584 584873696 2.450000e-28 137.0
49 TraesCS6A01G143300 chr2D 86.905 84 5 4 4478 4556 196710016 196709934 6.970000e-14 89.8
50 TraesCS6A01G143300 chr2D 98.000 50 1 0 4805 4854 526157370 526157419 2.510000e-13 87.9
51 TraesCS6A01G143300 chr2D 89.062 64 5 2 4795 4857 511922586 511922648 1.510000e-10 78.7
52 TraesCS6A01G143300 chr4D 88.506 174 12 3 3205 3378 442397441 442397276 2.390000e-48 204.0
53 TraesCS6A01G143300 chr4D 88.608 79 9 0 4478 4556 402527928 402528006 4.170000e-16 97.1
54 TraesCS6A01G143300 chrUn 89.441 161 16 1 3218 3378 22430645 22430804 8.580000e-48 202.0
55 TraesCS6A01G143300 chr5D 87.151 179 13 3 3201 3377 75416250 75416420 1.440000e-45 195.0
56 TraesCS6A01G143300 chr5D 86.034 179 14 6 3200 3378 443911621 443911788 1.120000e-41 182.0
57 TraesCS6A01G143300 chr4B 95.327 107 5 0 2407 2513 569768585 569768691 2.420000e-38 171.0
58 TraesCS6A01G143300 chr4B 88.608 79 9 0 4478 4556 498374457 498374535 4.170000e-16 97.1
59 TraesCS6A01G143300 chr7D 96.154 104 3 1 2415 2518 617181663 617181765 8.710000e-38 169.0
60 TraesCS6A01G143300 chr7A 94.444 108 5 1 2413 2520 68887674 68887568 1.130000e-36 165.0
61 TraesCS6A01G143300 chr7A 94.898 98 4 1 2416 2513 20698557 20698653 8.770000e-33 152.0
62 TraesCS6A01G143300 chr7A 88.119 101 7 5 2430 2529 148478806 148478710 1.150000e-21 115.0
63 TraesCS6A01G143300 chr7A 89.041 73 5 3 1 71 16134992 16134921 2.510000e-13 87.9
64 TraesCS6A01G143300 chr7A 84.615 91 5 4 3288 3378 222506231 222506312 1.170000e-11 82.4
65 TraesCS6A01G143300 chr7A 83.333 78 12 1 140 216 720587314 720587237 2.530000e-08 71.3
66 TraesCS6A01G143300 chr2B 95.192 104 4 1 2410 2513 440223761 440223863 4.050000e-36 163.0
67 TraesCS6A01G143300 chr2B 88.983 118 5 6 2416 2530 206371277 206371165 6.830000e-29 139.0
68 TraesCS6A01G143300 chr2B 79.641 167 11 8 3213 3379 269375544 269375401 1.160000e-16 99.0
69 TraesCS6A01G143300 chr2B 93.220 59 4 0 4799 4857 801041222 801041280 2.510000e-13 87.9
70 TraesCS6A01G143300 chr5B 92.105 114 7 2 2403 2516 704989380 704989269 5.240000e-35 159.0
71 TraesCS6A01G143300 chr1A 88.136 118 11 3 2414 2531 4045464 4045350 2.450000e-28 137.0
72 TraesCS6A01G143300 chr1A 98.276 58 1 0 3 60 546983995 546984052 8.960000e-18 102.0
73 TraesCS6A01G143300 chr1A 96.154 52 2 0 4806 4857 455611342 455611393 9.020000e-13 86.1
74 TraesCS6A01G143300 chr1A 91.935 62 4 1 4797 4857 507880817 507880756 9.020000e-13 86.1
75 TraesCS6A01G143300 chr4A 78.613 173 25 10 51 218 616622024 616622189 2.490000e-18 104.0
76 TraesCS6A01G143300 chr4A 88.158 76 6 2 1 73 91804827 91804752 2.510000e-13 87.9
77 TraesCS6A01G143300 chr7B 86.047 86 11 1 4471 4555 84186600 84186515 1.940000e-14 91.6
78 TraesCS6A01G143300 chr7B 100.000 49 0 0 4809 4857 252536216 252536264 1.940000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G143300 chr6A 119749105 119754160 5055 False 9337.000000 9337 100.000000 1 5056 1 chr6A.!!$F2 5055
1 TraesCS6A01G143300 chr6B 184144677 184148094 3417 False 1739.666667 2645 94.547333 657 4367 3 chr6B.!!$F3 3710
2 TraesCS6A01G143300 chr6D 99788823 99793614 4791 False 1001.428571 1733 93.837143 51 5056 7 chr6D.!!$F2 5005

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.889186 GACACAGGAAACCCACGCAT 60.889 55.0 0.00 0.0 0.00 4.73 F
1218 1280 0.389948 GAATCGCGTCTCTGGGTGTT 60.390 55.0 5.77 0.0 0.00 3.32 F
1616 1684 0.321298 TCGTTTAGCTTCTGGCCACC 60.321 55.0 0.00 0.0 43.05 4.61 F
3238 3366 0.326713 GCTCCCTCTTACCTCCCCTT 60.327 60.0 0.00 0.0 0.00 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1598 1666 0.321653 AGGTGGCCAGAAGCTAAACG 60.322 55.0 5.11 0.0 43.05 3.60 R
3217 3345 0.400670 GGGGAGGTAAGAGGGAGCAT 60.401 60.0 0.00 0.0 0.00 3.79 R
3272 3400 0.109597 CTCAATGCAACCAACGGCTC 60.110 55.0 0.00 0.0 0.00 4.70 R
4403 4543 0.373716 GCACAAGCGTGGTAGCATAC 59.626 55.0 4.26 0.0 43.81 2.39 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
120 121 4.580580 AGAGCAAGAAACAAACCCTAACAG 59.419 41.667 0.00 0.00 0.00 3.16
123 124 5.041287 GCAAGAAACAAACCCTAACAGAAC 58.959 41.667 0.00 0.00 0.00 3.01
128 129 3.463944 ACAAACCCTAACAGAACTCACG 58.536 45.455 0.00 0.00 0.00 4.35
155 156 5.566469 ACATCCAAAAATAAAGTCCTCCGA 58.434 37.500 0.00 0.00 0.00 4.55
177 178 2.472029 CAGTAAGGGTCTGGATCCACT 58.528 52.381 11.44 3.16 32.73 4.00
204 205 3.186283 TCCATGGCCCTAAGACTACAAA 58.814 45.455 6.96 0.00 0.00 2.83
218 219 4.530161 AGACTACAAAAGATGAGGCAGACT 59.470 41.667 0.00 0.00 0.00 3.24
220 221 3.498774 ACAAAAGATGAGGCAGACTGT 57.501 42.857 3.99 0.00 0.00 3.55
241 242 0.889186 GACACAGGAAACCCACGCAT 60.889 55.000 0.00 0.00 0.00 4.73
395 397 7.732222 AGATCCCAATAAAATAAACAAGCCA 57.268 32.000 0.00 0.00 0.00 4.75
407 413 9.474313 AAAATAAACAAGCCATATCTTACTCCA 57.526 29.630 0.00 0.00 0.00 3.86
409 415 8.854614 ATAAACAAGCCATATCTTACTCCATC 57.145 34.615 0.00 0.00 0.00 3.51
425 431 9.379791 CTTACTCCATCCGTTTTTATTTACTCT 57.620 33.333 0.00 0.00 0.00 3.24
446 452 8.659925 ACTCTGCATATTAGATTTGACTGAAG 57.340 34.615 0.00 0.00 0.00 3.02
538 544 8.975410 ATGATGTGAAAGTACATTCAACAATG 57.025 30.769 14.64 0.00 44.57 2.82
539 545 8.164058 TGATGTGAAAGTACATTCAACAATGA 57.836 30.769 14.64 2.19 41.97 2.57
620 626 9.818796 TGTTAAAATTTGCAAAACTTGACTTTC 57.181 25.926 17.19 0.09 0.00 2.62
629 635 7.041107 TGCAAAACTTGACTTTCAATAAAGCT 58.959 30.769 0.00 0.00 45.06 3.74
636 642 9.216117 ACTTGACTTTCAATAAAGCTAATACGT 57.784 29.630 0.00 0.00 45.06 3.57
638 644 8.766000 TGACTTTCAATAAAGCTAATACGTGA 57.234 30.769 0.00 0.00 45.06 4.35
669 710 4.635699 AAATGAACCTACTCCCTTCGTT 57.364 40.909 0.00 0.00 0.00 3.85
687 728 7.186804 CCTTCGTTCCATAATGTAACATGTTC 58.813 38.462 15.85 7.66 0.00 3.18
797 839 8.298729 AGATCCAATAAACCTGATTTCTTTCC 57.701 34.615 0.00 0.00 0.00 3.13
800 842 6.663523 TCCAATAAACCTGATTTCTTTCCCTC 59.336 38.462 0.00 0.00 0.00 4.30
801 843 6.665248 CCAATAAACCTGATTTCTTTCCCTCT 59.335 38.462 0.00 0.00 0.00 3.69
802 844 7.148000 CCAATAAACCTGATTTCTTTCCCTCTC 60.148 40.741 0.00 0.00 0.00 3.20
803 845 4.308526 AACCTGATTTCTTTCCCTCTCC 57.691 45.455 0.00 0.00 0.00 3.71
1157 1217 2.203070 GCGCGGGAGGTGATCAAT 60.203 61.111 8.83 0.00 0.00 2.57
1218 1280 0.389948 GAATCGCGTCTCTGGGTGTT 60.390 55.000 5.77 0.00 0.00 3.32
1273 1335 2.892425 CGCCCGCAAGATCCTGTC 60.892 66.667 0.00 0.00 43.02 3.51
1316 1381 2.279120 CGAGATGCGGCTCTGACC 60.279 66.667 0.00 0.00 36.03 4.02
1389 1454 3.071892 TGTTGAGGACGTTTACCAGGATT 59.928 43.478 0.00 0.00 0.00 3.01
1404 1469 3.431207 CCAGGATTTGCATTTTAGCTGGG 60.431 47.826 0.00 0.00 34.99 4.45
1466 1532 6.292168 CCGTTGACCTTAATCGTGCTAAATAG 60.292 42.308 0.00 0.00 0.00 1.73
1472 1538 7.101054 ACCTTAATCGTGCTAAATAGTGAACA 58.899 34.615 0.00 0.00 0.00 3.18
1506 1572 4.396166 AGCAAAACTGCACCTATACATGTC 59.604 41.667 0.00 0.00 37.25 3.06
1595 1663 5.408356 GTTTCACGTGGATGTATACAGAGT 58.592 41.667 17.00 4.05 0.00 3.24
1598 1666 5.647589 TCACGTGGATGTATACAGAGTTTC 58.352 41.667 17.00 3.41 0.00 2.78
1601 1669 5.100259 CGTGGATGTATACAGAGTTTCGTT 58.900 41.667 11.91 0.00 0.00 3.85
1608 1676 7.807687 TGTATACAGAGTTTCGTTTAGCTTC 57.192 36.000 0.08 0.00 0.00 3.86
1616 1684 0.321298 TCGTTTAGCTTCTGGCCACC 60.321 55.000 0.00 0.00 43.05 4.61
1618 1686 1.882352 CGTTTAGCTTCTGGCCACCTT 60.882 52.381 0.00 0.00 43.05 3.50
1631 1699 1.670295 GCCACCTTTTGCTTGTTTTGG 59.330 47.619 0.00 0.00 0.00 3.28
1633 1701 1.670295 CACCTTTTGCTTGTTTTGGCC 59.330 47.619 0.00 0.00 0.00 5.36
1636 1704 3.130633 CCTTTTGCTTGTTTTGGCCTAC 58.869 45.455 3.32 0.00 0.00 3.18
1645 1718 5.567423 GCTTGTTTTGGCCTACTGAATTCAT 60.567 40.000 8.96 2.32 0.00 2.57
1646 1719 5.389859 TGTTTTGGCCTACTGAATTCATG 57.610 39.130 8.96 6.02 0.00 3.07
1649 1722 6.211184 TGTTTTGGCCTACTGAATTCATGATT 59.789 34.615 8.96 0.00 0.00 2.57
1668 1741 6.232581 TGATTTGACTTGGTGGAAATTTGT 57.767 33.333 0.00 0.00 0.00 2.83
1671 1744 4.383850 TGACTTGGTGGAAATTTGTGTG 57.616 40.909 0.00 0.00 0.00 3.82
1693 1815 2.159240 GCTTCGGCCTTCATTTTTAGGG 60.159 50.000 0.00 0.00 34.32 3.53
1702 1824 3.732048 TCATTTTTAGGGGTGGGAGAC 57.268 47.619 0.00 0.00 0.00 3.36
1709 1831 1.455822 AGGGGTGGGAGACAAATTCA 58.544 50.000 0.00 0.00 0.00 2.57
1715 1837 4.217767 GGGTGGGAGACAAATTCAAAGTAC 59.782 45.833 0.00 0.00 0.00 2.73
1779 1901 8.892905 GTTCAGTTCGATGTGTTTTTATTTCTC 58.107 33.333 0.00 0.00 0.00 2.87
1782 1904 7.746475 CAGTTCGATGTGTTTTTATTTCTCTCC 59.254 37.037 0.00 0.00 0.00 3.71
1796 1918 4.873746 TTCTCTCCTCTGTACCAAAGTG 57.126 45.455 0.00 0.00 0.00 3.16
1937 2059 2.621998 GAGGATGGTGCCATTGAGATTG 59.378 50.000 5.08 0.00 36.70 2.67
2092 2214 5.568620 AAGATGTCCCAACATATCTACCC 57.431 43.478 0.00 0.00 46.20 3.69
2415 2539 5.815581 TGCCTGAAACTTGTATAAGGACAT 58.184 37.500 4.12 0.00 38.26 3.06
2416 2540 6.953101 TGCCTGAAACTTGTATAAGGACATA 58.047 36.000 4.12 0.00 38.26 2.29
2417 2541 6.821665 TGCCTGAAACTTGTATAAGGACATAC 59.178 38.462 4.12 0.00 38.26 2.39
2418 2542 7.048512 GCCTGAAACTTGTATAAGGACATACT 58.951 38.462 4.12 0.00 38.26 2.12
2419 2543 7.224949 GCCTGAAACTTGTATAAGGACATACTC 59.775 40.741 4.12 0.00 38.26 2.59
2420 2544 7.711339 CCTGAAACTTGTATAAGGACATACTCC 59.289 40.741 4.12 0.00 38.26 3.85
2421 2545 7.562135 TGAAACTTGTATAAGGACATACTCCC 58.438 38.462 4.12 0.00 40.53 4.30
2422 2546 7.402071 TGAAACTTGTATAAGGACATACTCCCT 59.598 37.037 4.12 0.00 40.53 4.20
2423 2547 6.980416 ACTTGTATAAGGACATACTCCCTC 57.020 41.667 4.12 0.00 40.53 4.30
2424 2548 5.839606 ACTTGTATAAGGACATACTCCCTCC 59.160 44.000 4.12 0.00 40.53 4.30
2425 2549 4.404640 TGTATAAGGACATACTCCCTCCG 58.595 47.826 0.00 0.00 40.53 4.63
2426 2550 3.614568 ATAAGGACATACTCCCTCCGT 57.385 47.619 0.00 0.00 40.53 4.69
2427 2551 2.249309 AAGGACATACTCCCTCCGTT 57.751 50.000 0.00 0.00 40.53 4.44
2428 2552 1.777941 AGGACATACTCCCTCCGTTC 58.222 55.000 0.00 0.00 40.53 3.95
2429 2553 0.751452 GGACATACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 31.83 3.62
2430 2554 1.481871 GACATACTCCCTCCGTTCCA 58.518 55.000 0.00 0.00 0.00 3.53
2431 2555 1.829222 GACATACTCCCTCCGTTCCAA 59.171 52.381 0.00 0.00 0.00 3.53
2432 2556 2.235402 GACATACTCCCTCCGTTCCAAA 59.765 50.000 0.00 0.00 0.00 3.28
2433 2557 2.844348 ACATACTCCCTCCGTTCCAAAT 59.156 45.455 0.00 0.00 0.00 2.32
2434 2558 3.265995 ACATACTCCCTCCGTTCCAAATT 59.734 43.478 0.00 0.00 0.00 1.82
2435 2559 4.472108 ACATACTCCCTCCGTTCCAAATTA 59.528 41.667 0.00 0.00 0.00 1.40
2436 2560 3.629142 ACTCCCTCCGTTCCAAATTAG 57.371 47.619 0.00 0.00 0.00 1.73
2437 2561 3.178865 ACTCCCTCCGTTCCAAATTAGA 58.821 45.455 0.00 0.00 0.00 2.10
2438 2562 3.780850 ACTCCCTCCGTTCCAAATTAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2439 2563 4.130118 CTCCCTCCGTTCCAAATTAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2440 2564 3.778075 TCCCTCCGTTCCAAATTAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2441 2565 3.877508 CCCTCCGTTCCAAATTAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2442 2566 4.384208 CCCTCCGTTCCAAATTAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
2443 2567 4.811557 CCTCCGTTCCAAATTAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
2444 2568 5.414789 TCCGTTCCAAATTAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
2445 2569 5.800296 TCCGTTCCAAATTAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
2446 2570 5.642063 TCCGTTCCAAATTAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
2447 2571 5.643777 CCGTTCCAAATTAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
2448 2572 6.149474 CCGTTCCAAATTAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
2449 2573 7.308589 CCGTTCCAAATTAGATGACTCAACTTT 60.309 37.037 0.00 0.00 0.00 2.66
2450 2574 7.535258 CGTTCCAAATTAGATGACTCAACTTTG 59.465 37.037 0.00 0.00 0.00 2.77
2451 2575 8.352942 GTTCCAAATTAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
2452 2576 9.567776 TTCCAAATTAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
2453 2577 8.999431 TCCAAATTAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
2454 2578 9.003658 CCAAATTAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
2482 2606 8.758715 ACTTTAGTACAAAGTTAGTACAAAGCG 58.241 33.333 14.04 0.00 43.24 4.68
2483 2607 8.647143 TTTAGTACAAAGTTAGTACAAAGCGT 57.353 30.769 6.30 0.00 43.24 5.07
2484 2608 6.520792 AGTACAAAGTTAGTACAAAGCGTG 57.479 37.500 6.30 0.00 43.24 5.34
2485 2609 4.806342 ACAAAGTTAGTACAAAGCGTGG 57.194 40.909 0.00 0.00 0.00 4.94
2486 2610 3.562557 ACAAAGTTAGTACAAAGCGTGGG 59.437 43.478 0.00 0.00 0.00 4.61
2487 2611 3.480505 AAGTTAGTACAAAGCGTGGGT 57.519 42.857 0.00 0.00 0.00 4.51
2488 2612 3.036075 AGTTAGTACAAAGCGTGGGTC 57.964 47.619 0.00 0.00 0.00 4.46
2489 2613 2.366266 AGTTAGTACAAAGCGTGGGTCA 59.634 45.455 0.00 0.00 0.00 4.02
2490 2614 3.007614 AGTTAGTACAAAGCGTGGGTCAT 59.992 43.478 0.00 0.00 0.00 3.06
2491 2615 2.094762 AGTACAAAGCGTGGGTCATC 57.905 50.000 0.00 0.00 0.00 2.92
2492 2616 1.623811 AGTACAAAGCGTGGGTCATCT 59.376 47.619 0.00 0.00 0.00 2.90
2493 2617 2.829720 AGTACAAAGCGTGGGTCATCTA 59.170 45.455 0.00 0.00 0.00 1.98
2494 2618 3.451178 AGTACAAAGCGTGGGTCATCTAT 59.549 43.478 0.00 0.00 0.00 1.98
2495 2619 3.350219 ACAAAGCGTGGGTCATCTATT 57.650 42.857 0.00 0.00 0.00 1.73
2496 2620 3.686016 ACAAAGCGTGGGTCATCTATTT 58.314 40.909 0.00 0.00 0.00 1.40
2497 2621 4.079253 ACAAAGCGTGGGTCATCTATTTT 58.921 39.130 0.00 0.00 0.00 1.82
2498 2622 4.082787 ACAAAGCGTGGGTCATCTATTTTG 60.083 41.667 0.00 0.00 0.00 2.44
2499 2623 2.643551 AGCGTGGGTCATCTATTTTGG 58.356 47.619 0.00 0.00 0.00 3.28
2500 2624 2.238646 AGCGTGGGTCATCTATTTTGGA 59.761 45.455 0.00 0.00 0.00 3.53
2501 2625 3.013921 GCGTGGGTCATCTATTTTGGAA 58.986 45.455 0.00 0.00 0.00 3.53
2502 2626 3.181500 GCGTGGGTCATCTATTTTGGAAC 60.181 47.826 0.00 0.00 0.00 3.62
2503 2627 3.063452 CGTGGGTCATCTATTTTGGAACG 59.937 47.826 0.00 0.00 0.00 3.95
2504 2628 3.377172 GTGGGTCATCTATTTTGGAACGG 59.623 47.826 0.00 0.00 0.00 4.44
2505 2629 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2506 2630 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2507 2631 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2508 2632 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2509 2633 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2510 2634 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2618 2746 2.236489 AAACCCATCCAATCCCACTG 57.764 50.000 0.00 0.00 0.00 3.66
2692 2820 9.746457 AAGCCATTTTTATTAGAGACTCTTCTT 57.254 29.630 10.96 0.00 29.47 2.52
3037 3165 1.006832 GTACCAGCTGTGTTATGCCG 58.993 55.000 13.81 0.00 0.00 5.69
3050 3178 7.555306 TGTGTTATGCCGCTATGTTTTAATA 57.445 32.000 0.00 0.00 0.00 0.98
3078 3206 4.439305 TTTTGCATGTGCCTCTGATAAC 57.561 40.909 2.07 0.00 41.18 1.89
3079 3207 2.042686 TGCATGTGCCTCTGATAACC 57.957 50.000 2.07 0.00 41.18 2.85
3142 3270 6.374053 CCATTGTACCACATCATGTTCTTACA 59.626 38.462 0.00 0.00 38.95 2.41
3158 3286 6.127758 TGTTCTTACAAAGATGCAGTTGTGTT 60.128 34.615 18.49 0.00 38.40 3.32
3217 3345 9.567776 TCACATCTTTATTGAGGTTTCTTAACA 57.432 29.630 0.00 0.00 35.92 2.41
3220 3348 9.294030 CATCTTTATTGAGGTTTCTTAACATGC 57.706 33.333 0.00 0.00 35.92 4.06
3221 3349 8.635765 TCTTTATTGAGGTTTCTTAACATGCT 57.364 30.769 0.00 0.00 35.92 3.79
3222 3350 8.730680 TCTTTATTGAGGTTTCTTAACATGCTC 58.269 33.333 0.00 0.00 35.92 4.26
3223 3351 5.904362 ATTGAGGTTTCTTAACATGCTCC 57.096 39.130 0.00 0.00 35.92 4.70
3224 3352 3.686016 TGAGGTTTCTTAACATGCTCCC 58.314 45.455 0.00 0.00 35.92 4.30
3225 3353 3.330701 TGAGGTTTCTTAACATGCTCCCT 59.669 43.478 0.00 0.00 35.92 4.20
3226 3354 3.942115 GAGGTTTCTTAACATGCTCCCTC 59.058 47.826 0.00 0.00 35.92 4.30
3227 3355 3.589288 AGGTTTCTTAACATGCTCCCTCT 59.411 43.478 0.00 0.00 35.92 3.69
3228 3356 4.043435 AGGTTTCTTAACATGCTCCCTCTT 59.957 41.667 0.00 0.00 35.92 2.85
3229 3357 5.250774 AGGTTTCTTAACATGCTCCCTCTTA 59.749 40.000 0.00 0.00 35.92 2.10
3230 3358 5.354513 GGTTTCTTAACATGCTCCCTCTTAC 59.645 44.000 0.00 0.00 35.92 2.34
3231 3359 4.755266 TCTTAACATGCTCCCTCTTACC 57.245 45.455 0.00 0.00 0.00 2.85
3232 3360 4.362677 TCTTAACATGCTCCCTCTTACCT 58.637 43.478 0.00 0.00 0.00 3.08
3233 3361 4.406003 TCTTAACATGCTCCCTCTTACCTC 59.594 45.833 0.00 0.00 0.00 3.85
3234 3362 1.501582 ACATGCTCCCTCTTACCTCC 58.498 55.000 0.00 0.00 0.00 4.30
3235 3363 0.761802 CATGCTCCCTCTTACCTCCC 59.238 60.000 0.00 0.00 0.00 4.30
3236 3364 0.400670 ATGCTCCCTCTTACCTCCCC 60.401 60.000 0.00 0.00 0.00 4.81
3237 3365 1.315216 GCTCCCTCTTACCTCCCCT 59.685 63.158 0.00 0.00 0.00 4.79
3238 3366 0.326713 GCTCCCTCTTACCTCCCCTT 60.327 60.000 0.00 0.00 0.00 3.95
3239 3367 1.906692 GCTCCCTCTTACCTCCCCTTT 60.907 57.143 0.00 0.00 0.00 3.11
3240 3368 2.563406 CTCCCTCTTACCTCCCCTTTT 58.437 52.381 0.00 0.00 0.00 2.27
3241 3369 2.506231 CTCCCTCTTACCTCCCCTTTTC 59.494 54.545 0.00 0.00 0.00 2.29
3242 3370 2.157911 TCCCTCTTACCTCCCCTTTTCA 60.158 50.000 0.00 0.00 0.00 2.69
3243 3371 2.026169 CCCTCTTACCTCCCCTTTTCAC 60.026 54.545 0.00 0.00 0.00 3.18
3244 3372 2.913617 CCTCTTACCTCCCCTTTTCACT 59.086 50.000 0.00 0.00 0.00 3.41
3245 3373 3.330998 CCTCTTACCTCCCCTTTTCACTT 59.669 47.826 0.00 0.00 0.00 3.16
3246 3374 4.327680 CTCTTACCTCCCCTTTTCACTTG 58.672 47.826 0.00 0.00 0.00 3.16
3247 3375 3.977999 TCTTACCTCCCCTTTTCACTTGA 59.022 43.478 0.00 0.00 0.00 3.02
3248 3376 2.959465 ACCTCCCCTTTTCACTTGAG 57.041 50.000 0.00 0.00 0.00 3.02
3249 3377 2.418669 ACCTCCCCTTTTCACTTGAGA 58.581 47.619 0.00 0.00 0.00 3.27
3250 3378 2.373502 ACCTCCCCTTTTCACTTGAGAG 59.626 50.000 0.00 0.00 0.00 3.20
3251 3379 2.290577 CCTCCCCTTTTCACTTGAGAGG 60.291 54.545 0.00 0.00 34.20 3.69
3252 3380 2.373502 CTCCCCTTTTCACTTGAGAGGT 59.626 50.000 8.91 0.00 31.32 3.85
3253 3381 3.583086 CTCCCCTTTTCACTTGAGAGGTA 59.417 47.826 8.91 0.00 31.32 3.08
3254 3382 3.977999 TCCCCTTTTCACTTGAGAGGTAA 59.022 43.478 8.91 0.00 31.32 2.85
3255 3383 4.041691 TCCCCTTTTCACTTGAGAGGTAAG 59.958 45.833 8.91 0.00 31.32 2.34
3256 3384 4.041691 CCCCTTTTCACTTGAGAGGTAAGA 59.958 45.833 8.91 0.00 31.32 2.10
3257 3385 5.241662 CCCTTTTCACTTGAGAGGTAAGAG 58.758 45.833 8.91 0.00 31.32 2.85
3258 3386 5.221742 CCCTTTTCACTTGAGAGGTAAGAGT 60.222 44.000 8.91 0.00 31.32 3.24
3259 3387 6.014499 CCCTTTTCACTTGAGAGGTAAGAGTA 60.014 42.308 8.91 0.00 31.32 2.59
3260 3388 6.869388 CCTTTTCACTTGAGAGGTAAGAGTAC 59.131 42.308 0.00 0.00 0.00 2.73
3261 3389 6.971726 TTTCACTTGAGAGGTAAGAGTACA 57.028 37.500 0.00 0.00 31.21 2.90
3262 3390 6.971726 TTCACTTGAGAGGTAAGAGTACAA 57.028 37.500 0.00 0.00 31.21 2.41
3263 3391 6.971726 TCACTTGAGAGGTAAGAGTACAAA 57.028 37.500 0.00 0.00 31.21 2.83
3264 3392 7.356089 TCACTTGAGAGGTAAGAGTACAAAA 57.644 36.000 0.00 0.00 31.21 2.44
3265 3393 7.963532 TCACTTGAGAGGTAAGAGTACAAAAT 58.036 34.615 0.00 0.00 31.21 1.82
3266 3394 9.085645 TCACTTGAGAGGTAAGAGTACAAAATA 57.914 33.333 0.00 0.00 31.21 1.40
3267 3395 9.360093 CACTTGAGAGGTAAGAGTACAAAATAG 57.640 37.037 0.00 0.00 31.21 1.73
3268 3396 9.310449 ACTTGAGAGGTAAGAGTACAAAATAGA 57.690 33.333 0.00 0.00 31.21 1.98
3271 3399 9.702253 TGAGAGGTAAGAGTACAAAATAGATCT 57.298 33.333 0.00 0.00 31.21 2.75
3272 3400 9.959749 GAGAGGTAAGAGTACAAAATAGATCTG 57.040 37.037 5.18 0.00 31.21 2.90
3273 3401 9.702253 AGAGGTAAGAGTACAAAATAGATCTGA 57.298 33.333 5.18 0.00 31.21 3.27
3274 3402 9.959749 GAGGTAAGAGTACAAAATAGATCTGAG 57.040 37.037 5.18 0.00 31.21 3.35
3275 3403 8.417884 AGGTAAGAGTACAAAATAGATCTGAGC 58.582 37.037 5.18 0.00 31.21 4.26
3276 3404 7.654116 GGTAAGAGTACAAAATAGATCTGAGCC 59.346 40.741 5.18 0.00 31.21 4.70
3277 3405 5.837437 AGAGTACAAAATAGATCTGAGCCG 58.163 41.667 5.18 0.00 0.00 5.52
3278 3406 5.361285 AGAGTACAAAATAGATCTGAGCCGT 59.639 40.000 5.18 0.00 0.00 5.68
3279 3407 5.978814 AGTACAAAATAGATCTGAGCCGTT 58.021 37.500 5.18 0.00 0.00 4.44
3280 3408 5.812642 AGTACAAAATAGATCTGAGCCGTTG 59.187 40.000 5.18 4.00 0.00 4.10
3281 3409 3.941483 ACAAAATAGATCTGAGCCGTTGG 59.059 43.478 5.18 0.00 0.00 3.77
3282 3410 3.914426 AAATAGATCTGAGCCGTTGGT 57.086 42.857 5.18 0.00 0.00 3.67
3283 3411 3.914426 AATAGATCTGAGCCGTTGGTT 57.086 42.857 5.18 0.00 0.00 3.67
3284 3412 2.672961 TAGATCTGAGCCGTTGGTTG 57.327 50.000 5.18 0.00 0.00 3.77
3285 3413 0.674895 AGATCTGAGCCGTTGGTTGC 60.675 55.000 0.00 0.00 0.00 4.17
3286 3414 0.955428 GATCTGAGCCGTTGGTTGCA 60.955 55.000 0.00 0.00 0.00 4.08
3287 3415 0.322816 ATCTGAGCCGTTGGTTGCAT 60.323 50.000 0.00 0.00 0.00 3.96
3288 3416 0.537143 TCTGAGCCGTTGGTTGCATT 60.537 50.000 0.00 0.00 0.00 3.56
3289 3417 0.387622 CTGAGCCGTTGGTTGCATTG 60.388 55.000 0.00 0.00 0.00 2.82
3290 3418 0.821301 TGAGCCGTTGGTTGCATTGA 60.821 50.000 0.00 0.00 0.00 2.57
3291 3419 0.109597 GAGCCGTTGGTTGCATTGAG 60.110 55.000 0.00 0.00 0.00 3.02
3292 3420 0.823356 AGCCGTTGGTTGCATTGAGT 60.823 50.000 0.00 0.00 0.00 3.41
3293 3421 0.878416 GCCGTTGGTTGCATTGAGTA 59.122 50.000 0.00 0.00 0.00 2.59
3294 3422 1.135689 GCCGTTGGTTGCATTGAGTAG 60.136 52.381 0.00 0.00 0.00 2.57
3295 3423 2.151202 CCGTTGGTTGCATTGAGTAGT 58.849 47.619 0.00 0.00 0.00 2.73
3296 3424 2.095768 CCGTTGGTTGCATTGAGTAGTG 60.096 50.000 0.00 0.00 0.00 2.74
3297 3425 2.095768 CGTTGGTTGCATTGAGTAGTGG 60.096 50.000 0.00 0.00 0.00 4.00
3298 3426 2.198827 TGGTTGCATTGAGTAGTGGG 57.801 50.000 0.00 0.00 0.00 4.61
3299 3427 1.423541 TGGTTGCATTGAGTAGTGGGT 59.576 47.619 0.00 0.00 0.00 4.51
3300 3428 2.158534 TGGTTGCATTGAGTAGTGGGTT 60.159 45.455 0.00 0.00 0.00 4.11
3301 3429 2.890945 GGTTGCATTGAGTAGTGGGTTT 59.109 45.455 0.00 0.00 0.00 3.27
3302 3430 3.305335 GGTTGCATTGAGTAGTGGGTTTG 60.305 47.826 0.00 0.00 0.00 2.93
3303 3431 3.500448 TGCATTGAGTAGTGGGTTTGA 57.500 42.857 0.00 0.00 0.00 2.69
3304 3432 4.032960 TGCATTGAGTAGTGGGTTTGAT 57.967 40.909 0.00 0.00 0.00 2.57
3305 3433 4.406456 TGCATTGAGTAGTGGGTTTGATT 58.594 39.130 0.00 0.00 0.00 2.57
3306 3434 5.565509 TGCATTGAGTAGTGGGTTTGATTA 58.434 37.500 0.00 0.00 0.00 1.75
3307 3435 6.007076 TGCATTGAGTAGTGGGTTTGATTAA 58.993 36.000 0.00 0.00 0.00 1.40
3308 3436 6.072175 TGCATTGAGTAGTGGGTTTGATTAAC 60.072 38.462 0.00 0.00 35.94 2.01
3309 3437 6.151144 GCATTGAGTAGTGGGTTTGATTAACT 59.849 38.462 0.00 0.00 36.93 2.24
3310 3438 7.626452 GCATTGAGTAGTGGGTTTGATTAACTC 60.626 40.741 0.00 0.00 37.76 3.01
3311 3439 6.681729 TGAGTAGTGGGTTTGATTAACTCT 57.318 37.500 0.00 0.00 38.12 3.24
3312 3440 7.074653 TGAGTAGTGGGTTTGATTAACTCTT 57.925 36.000 0.00 0.00 38.12 2.85
3313 3441 8.197592 TGAGTAGTGGGTTTGATTAACTCTTA 57.802 34.615 0.00 0.00 38.12 2.10
3314 3442 8.092687 TGAGTAGTGGGTTTGATTAACTCTTAC 58.907 37.037 0.00 0.00 38.12 2.34
3315 3443 7.392418 AGTAGTGGGTTTGATTAACTCTTACC 58.608 38.462 0.00 0.00 38.12 2.85
3316 3444 6.449830 AGTGGGTTTGATTAACTCTTACCT 57.550 37.500 0.00 0.00 38.12 3.08
3317 3445 6.849151 AGTGGGTTTGATTAACTCTTACCTT 58.151 36.000 0.00 0.00 38.12 3.50
3318 3446 6.940867 AGTGGGTTTGATTAACTCTTACCTTC 59.059 38.462 0.00 0.00 38.12 3.46
3319 3447 6.940867 GTGGGTTTGATTAACTCTTACCTTCT 59.059 38.462 0.00 0.00 38.12 2.85
3320 3448 7.447545 GTGGGTTTGATTAACTCTTACCTTCTT 59.552 37.037 0.00 0.00 38.12 2.52
3321 3449 8.662255 TGGGTTTGATTAACTCTTACCTTCTTA 58.338 33.333 0.00 0.00 38.12 2.10
3322 3450 8.944029 GGGTTTGATTAACTCTTACCTTCTTAC 58.056 37.037 0.00 0.00 34.20 2.34
3323 3451 8.944029 GGTTTGATTAACTCTTACCTTCTTACC 58.056 37.037 0.00 0.00 36.93 2.85
3324 3452 9.722184 GTTTGATTAACTCTTACCTTCTTACCT 57.278 33.333 0.00 0.00 33.79 3.08
3325 3453 9.720769 TTTGATTAACTCTTACCTTCTTACCTG 57.279 33.333 0.00 0.00 0.00 4.00
3326 3454 8.660295 TGATTAACTCTTACCTTCTTACCTGA 57.340 34.615 0.00 0.00 0.00 3.86
3327 3455 9.268282 TGATTAACTCTTACCTTCTTACCTGAT 57.732 33.333 0.00 0.00 0.00 2.90
3331 3459 7.421087 ACTCTTACCTTCTTACCTGATTACC 57.579 40.000 0.00 0.00 0.00 2.85
3332 3460 7.190501 ACTCTTACCTTCTTACCTGATTACCT 58.809 38.462 0.00 0.00 0.00 3.08
3333 3461 7.342541 ACTCTTACCTTCTTACCTGATTACCTC 59.657 40.741 0.00 0.00 0.00 3.85
3334 3462 6.610425 TCTTACCTTCTTACCTGATTACCTCC 59.390 42.308 0.00 0.00 0.00 4.30
3335 3463 4.038633 ACCTTCTTACCTGATTACCTCCC 58.961 47.826 0.00 0.00 0.00 4.30
3336 3464 4.037927 CCTTCTTACCTGATTACCTCCCA 58.962 47.826 0.00 0.00 0.00 4.37
3337 3465 4.660771 CCTTCTTACCTGATTACCTCCCAT 59.339 45.833 0.00 0.00 0.00 4.00
3338 3466 5.455326 CCTTCTTACCTGATTACCTCCCATG 60.455 48.000 0.00 0.00 0.00 3.66
3339 3467 4.631234 TCTTACCTGATTACCTCCCATGT 58.369 43.478 0.00 0.00 0.00 3.21
3340 3468 4.408921 TCTTACCTGATTACCTCCCATGTG 59.591 45.833 0.00 0.00 0.00 3.21
3341 3469 2.845659 ACCTGATTACCTCCCATGTGA 58.154 47.619 0.00 0.00 0.00 3.58
3342 3470 3.189606 ACCTGATTACCTCCCATGTGAA 58.810 45.455 0.00 0.00 0.00 3.18
3343 3471 3.591527 ACCTGATTACCTCCCATGTGAAA 59.408 43.478 0.00 0.00 0.00 2.69
3344 3472 4.044065 ACCTGATTACCTCCCATGTGAAAA 59.956 41.667 0.00 0.00 0.00 2.29
3345 3473 4.641989 CCTGATTACCTCCCATGTGAAAAG 59.358 45.833 0.00 0.00 0.00 2.27
3346 3474 5.500234 CTGATTACCTCCCATGTGAAAAGA 58.500 41.667 0.00 0.00 0.00 2.52
3347 3475 5.500234 TGATTACCTCCCATGTGAAAAGAG 58.500 41.667 0.00 0.00 0.00 2.85
3349 3477 1.355720 ACCTCCCATGTGAAAAGAGGG 59.644 52.381 9.06 0.00 46.93 4.30
3350 3478 1.341383 CCTCCCATGTGAAAAGAGGGG 60.341 57.143 0.00 0.00 40.42 4.79
3351 3479 0.704076 TCCCATGTGAAAAGAGGGGG 59.296 55.000 0.00 0.00 40.02 5.40
3352 3480 0.409484 CCCATGTGAAAAGAGGGGGT 59.591 55.000 0.00 0.00 35.83 4.95
3353 3481 1.638589 CCCATGTGAAAAGAGGGGGTA 59.361 52.381 0.00 0.00 35.83 3.69
3354 3482 2.042433 CCCATGTGAAAAGAGGGGGTAA 59.958 50.000 0.00 0.00 35.83 2.85
3355 3483 3.356290 CCATGTGAAAAGAGGGGGTAAG 58.644 50.000 0.00 0.00 0.00 2.34
3356 3484 3.010138 CCATGTGAAAAGAGGGGGTAAGA 59.990 47.826 0.00 0.00 0.00 2.10
3357 3485 4.265073 CATGTGAAAAGAGGGGGTAAGAG 58.735 47.826 0.00 0.00 0.00 2.85
3358 3486 2.642807 TGTGAAAAGAGGGGGTAAGAGG 59.357 50.000 0.00 0.00 0.00 3.69
3359 3487 2.026169 GTGAAAAGAGGGGGTAAGAGGG 60.026 54.545 0.00 0.00 0.00 4.30
3360 3488 2.157911 TGAAAAGAGGGGGTAAGAGGGA 60.158 50.000 0.00 0.00 0.00 4.20
3361 3489 2.272074 AAAGAGGGGGTAAGAGGGAG 57.728 55.000 0.00 0.00 0.00 4.30
3362 3490 0.326713 AAGAGGGGGTAAGAGGGAGC 60.327 60.000 0.00 0.00 0.00 4.70
3363 3491 1.003051 GAGGGGGTAAGAGGGAGCA 59.997 63.158 0.00 0.00 0.00 4.26
3364 3492 0.400670 GAGGGGGTAAGAGGGAGCAT 60.401 60.000 0.00 0.00 0.00 3.79
3365 3493 0.695803 AGGGGGTAAGAGGGAGCATG 60.696 60.000 0.00 0.00 0.00 4.06
3366 3494 0.988678 GGGGGTAAGAGGGAGCATGT 60.989 60.000 0.00 0.00 0.00 3.21
3367 3495 0.919710 GGGGTAAGAGGGAGCATGTT 59.080 55.000 0.00 0.00 0.00 2.71
3368 3496 2.124411 GGGGTAAGAGGGAGCATGTTA 58.876 52.381 0.00 0.00 0.00 2.41
3369 3497 2.508300 GGGGTAAGAGGGAGCATGTTAA 59.492 50.000 0.00 0.00 0.00 2.01
3370 3498 3.053917 GGGGTAAGAGGGAGCATGTTAAA 60.054 47.826 0.00 0.00 0.00 1.52
3371 3499 4.569015 GGGGTAAGAGGGAGCATGTTAAAA 60.569 45.833 0.00 0.00 0.00 1.52
3372 3500 5.201243 GGGTAAGAGGGAGCATGTTAAAAT 58.799 41.667 0.00 0.00 0.00 1.82
3373 3501 5.656859 GGGTAAGAGGGAGCATGTTAAAATT 59.343 40.000 0.00 0.00 0.00 1.82
3374 3502 6.405842 GGGTAAGAGGGAGCATGTTAAAATTG 60.406 42.308 0.00 0.00 0.00 2.32
3375 3503 4.725790 AGAGGGAGCATGTTAAAATTGC 57.274 40.909 0.00 0.00 36.63 3.56
3380 3508 2.879826 AGCATGTTAAAATTGCTCGGC 58.120 42.857 0.00 0.00 42.88 5.54
3381 3509 2.493278 AGCATGTTAAAATTGCTCGGCT 59.507 40.909 0.00 0.00 42.88 5.52
3382 3510 3.694072 AGCATGTTAAAATTGCTCGGCTA 59.306 39.130 0.00 0.00 42.88 3.93
3445 3575 5.255710 TGTTGAACTTTTACCACACCATG 57.744 39.130 0.00 0.00 0.00 3.66
3802 3935 1.168714 GTGACAAGGATGGGAACTGC 58.831 55.000 0.00 0.00 0.00 4.40
3847 3980 5.019470 TCACCAGATGGCTCTATAGGTATG 58.981 45.833 0.00 0.00 39.32 2.39
3853 3986 6.876257 CAGATGGCTCTATAGGTATGGTTTTC 59.124 42.308 0.00 0.00 0.00 2.29
3867 4001 8.870116 AGGTATGGTTTTCTTTTCAATTAAGCT 58.130 29.630 0.00 0.00 0.00 3.74
3927 4062 6.533819 AATTTCTGTGTTTGTGCATGATTG 57.466 33.333 0.00 0.00 0.00 2.67
3934 4069 6.747125 TGTGTTTGTGCATGATTGTTCTTAT 58.253 32.000 0.00 0.00 0.00 1.73
3987 4122 1.464608 CTTTTGATGACATGGTCGCGT 59.535 47.619 5.77 0.00 34.95 6.01
3998 4133 0.038892 TGGTCGCGTTAGGTCAAGAC 60.039 55.000 5.77 0.00 0.00 3.01
4025 4160 2.351738 CCACGAACTGAAATCAAAGGCC 60.352 50.000 0.00 0.00 0.00 5.19
4040 4175 1.674651 GGCCGGACCTGGTTTCTTC 60.675 63.158 5.05 0.00 34.51 2.87
4049 4184 2.304761 ACCTGGTTTCTTCGATGGCTTA 59.695 45.455 0.00 0.00 0.00 3.09
4056 4191 5.007724 GGTTTCTTCGATGGCTTACAATAGG 59.992 44.000 0.00 0.00 0.00 2.57
4062 4197 5.305585 TCGATGGCTTACAATAGGAAATCC 58.694 41.667 0.00 0.00 0.00 3.01
4067 4202 3.821033 GCTTACAATAGGAAATCCGCCAT 59.179 43.478 0.00 0.00 42.08 4.40
4082 4217 0.875059 GCCATGCCCTAATAGCGTTC 59.125 55.000 0.00 0.00 0.00 3.95
4088 4223 5.451798 CCATGCCCTAATAGCGTTCATTTTT 60.452 40.000 0.00 0.00 0.00 1.94
4145 4285 7.412853 TGTACTACATATTGAGCTGTACCAA 57.587 36.000 0.00 0.00 0.00 3.67
4219 4359 5.471116 ACGGTTTAGTGGTTTGTTATCCTTC 59.529 40.000 0.00 0.00 0.00 3.46
4253 4393 1.356124 TCTGGAAGAGGCTTCTGCTT 58.644 50.000 3.46 0.00 38.67 3.91
4311 4451 3.708890 TGCAGATGTTTTGCTGTTTCAG 58.291 40.909 0.00 0.00 42.02 3.02
4321 4461 5.860941 TTTGCTGTTTCAGGAAATAACCA 57.139 34.783 11.23 0.00 44.42 3.67
4330 4470 7.505585 TGTTTCAGGAAATAACCAGTTCTGAAT 59.494 33.333 10.57 0.00 31.93 2.57
4331 4471 7.687941 TTCAGGAAATAACCAGTTCTGAATC 57.312 36.000 7.25 0.00 29.40 2.52
4391 4531 4.314740 TTTTTGAATGGTTTCCAGGACG 57.685 40.909 0.00 0.00 36.75 4.79
4403 4543 2.644676 TCCAGGACGTCTCTCATGTAG 58.355 52.381 16.46 0.00 0.00 2.74
4433 4573 2.864343 CACGCTTGTGCTACCTAATACC 59.136 50.000 0.00 0.00 36.68 2.73
4439 4579 5.784177 CTTGTGCTACCTAATACCGATCAT 58.216 41.667 0.00 0.00 0.00 2.45
4440 4580 5.801531 TGTGCTACCTAATACCGATCATT 57.198 39.130 0.00 0.00 0.00 2.57
4441 4581 5.538118 TGTGCTACCTAATACCGATCATTG 58.462 41.667 0.00 0.00 0.00 2.82
4442 4582 5.069914 TGTGCTACCTAATACCGATCATTGT 59.930 40.000 0.00 0.00 0.00 2.71
4443 4583 5.989777 GTGCTACCTAATACCGATCATTGTT 59.010 40.000 0.00 0.00 0.00 2.83
4444 4584 6.482308 GTGCTACCTAATACCGATCATTGTTT 59.518 38.462 0.00 0.00 0.00 2.83
4485 4625 7.920227 AGTACGATCATATCTACTACTCCCTT 58.080 38.462 0.00 0.00 0.00 3.95
4519 4659 9.715121 AAATATAAGAACGTGGAAAAGTAGTGA 57.285 29.630 0.00 0.00 0.00 3.41
4520 4660 9.886132 AATATAAGAACGTGGAAAAGTAGTGAT 57.114 29.630 0.00 0.00 0.00 3.06
4521 4661 7.829378 ATAAGAACGTGGAAAAGTAGTGATC 57.171 36.000 0.00 0.00 0.00 2.92
4522 4662 5.470047 AGAACGTGGAAAAGTAGTGATCT 57.530 39.130 0.00 0.00 0.00 2.75
4523 4663 6.585695 AGAACGTGGAAAAGTAGTGATCTA 57.414 37.500 0.00 0.00 0.00 1.98
4524 4664 6.989659 AGAACGTGGAAAAGTAGTGATCTAA 58.010 36.000 0.00 0.00 0.00 2.10
4525 4665 7.439381 AGAACGTGGAAAAGTAGTGATCTAAA 58.561 34.615 0.00 0.00 0.00 1.85
4526 4666 7.384387 AGAACGTGGAAAAGTAGTGATCTAAAC 59.616 37.037 0.00 0.00 0.00 2.01
4527 4667 5.632347 ACGTGGAAAAGTAGTGATCTAAACG 59.368 40.000 0.00 0.00 0.00 3.60
4528 4668 5.444218 CGTGGAAAAGTAGTGATCTAAACGC 60.444 44.000 0.00 0.00 0.00 4.84
4529 4669 5.638234 GTGGAAAAGTAGTGATCTAAACGCT 59.362 40.000 0.00 0.00 0.00 5.07
4530 4670 5.867716 TGGAAAAGTAGTGATCTAAACGCTC 59.132 40.000 0.00 0.00 0.00 5.03
4531 4671 6.100668 GGAAAAGTAGTGATCTAAACGCTCT 58.899 40.000 0.00 0.00 0.00 4.09
4532 4672 6.590677 GGAAAAGTAGTGATCTAAACGCTCTT 59.409 38.462 0.00 0.00 0.00 2.85
4533 4673 7.758528 GGAAAAGTAGTGATCTAAACGCTCTTA 59.241 37.037 0.00 0.00 0.00 2.10
4534 4674 9.303537 GAAAAGTAGTGATCTAAACGCTCTTAT 57.696 33.333 0.00 0.00 0.00 1.73
4549 4689 8.522178 AACGCTCTTATATTTCTTTATCGAGG 57.478 34.615 0.00 0.00 0.00 4.63
4550 4690 7.091443 ACGCTCTTATATTTCTTTATCGAGGG 58.909 38.462 0.00 0.00 33.38 4.30
4568 4708 3.868757 GGGAGTACCTTGGAAAAATGC 57.131 47.619 0.00 0.00 35.85 3.56
4609 4749 8.673626 AAGTCTTGCAACAAATTTATATGACG 57.326 30.769 0.00 0.00 0.00 4.35
4683 4823 7.713764 AAAAATGACTAAAATGTGGCACTTC 57.286 32.000 19.83 4.51 0.00 3.01
4704 4844 2.185310 CTTAGGTTGGGAGCAGCGGT 62.185 60.000 0.00 0.00 0.00 5.68
4722 4862 2.032054 CGGTAGCACATTGGCACTTATG 59.968 50.000 0.00 0.00 35.83 1.90
4821 4981 3.452627 ACAAGATCACATGTACTCCCTCC 59.547 47.826 0.00 0.00 0.00 4.30
4825 4985 0.460311 CACATGTACTCCCTCCGTCC 59.540 60.000 0.00 0.00 0.00 4.79
4838 4998 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
5000 5201 3.723835 GCAGCTAACGACCGTTACAATTG 60.724 47.826 10.52 3.24 39.31 2.32
5019 5220 4.933505 TTGCAACATTCCAAGTTCATCA 57.066 36.364 0.00 0.00 0.00 3.07
5021 5222 3.256383 TGCAACATTCCAAGTTCATCAGG 59.744 43.478 0.00 0.00 0.00 3.86
5024 5225 3.424703 ACATTCCAAGTTCATCAGGGTG 58.575 45.455 0.00 0.00 0.00 4.61
5046 5247 4.640201 TGGTAGATTGCTTGTTAGATTGGC 59.360 41.667 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.263243 CCTGAAGGAAATATGCCCTAGAGG 60.263 50.000 0.00 0.00 37.39 3.69
29 30 4.263243 CCCTGAAGGAAATATGCCCTAGAG 60.263 50.000 0.00 0.00 38.24 2.43
30 31 3.652869 CCCTGAAGGAAATATGCCCTAGA 59.347 47.826 0.00 0.00 38.24 2.43
31 32 3.652869 TCCCTGAAGGAAATATGCCCTAG 59.347 47.826 0.00 0.00 43.78 3.02
32 33 3.675613 TCCCTGAAGGAAATATGCCCTA 58.324 45.455 0.00 0.00 43.78 3.53
33 34 2.502745 TCCCTGAAGGAAATATGCCCT 58.497 47.619 0.00 0.00 43.78 5.19
44 45 7.521669 AGATGAAATAAGGTTATCCCTGAAGG 58.478 38.462 0.00 0.00 45.47 3.46
45 46 8.986929 AAGATGAAATAAGGTTATCCCTGAAG 57.013 34.615 0.00 0.00 45.47 3.02
61 62 6.459298 CGATGGCAGCTCTTTAAAGATGAAAT 60.459 38.462 18.02 11.02 34.60 2.17
120 121 8.568732 TTATTTTTGGATGTTTTCGTGAGTTC 57.431 30.769 0.00 0.00 0.00 3.01
123 124 8.574196 ACTTTATTTTTGGATGTTTTCGTGAG 57.426 30.769 0.00 0.00 0.00 3.51
128 129 7.328493 CGGAGGACTTTATTTTTGGATGTTTTC 59.672 37.037 0.00 0.00 0.00 2.29
168 169 0.915872 ATGGAGGCACAGTGGATCCA 60.916 55.000 11.44 11.44 43.82 3.41
190 191 5.119694 GCCTCATCTTTTGTAGTCTTAGGG 58.880 45.833 0.00 0.00 0.00 3.53
204 205 1.203523 GTCGACAGTCTGCCTCATCTT 59.796 52.381 11.55 0.00 0.00 2.40
218 219 0.179067 GTGGGTTTCCTGTGTCGACA 60.179 55.000 15.76 15.76 0.00 4.35
220 221 1.068417 CGTGGGTTTCCTGTGTCGA 59.932 57.895 0.00 0.00 0.00 4.20
256 257 3.196939 AGAGTACTCCTTCGCTCGTAT 57.803 47.619 19.38 0.00 33.57 3.06
303 305 5.712217 TTCGGCGTGTATTAAGAGATTTG 57.288 39.130 6.85 0.00 0.00 2.32
610 616 9.216117 ACGTATTAGCTTTATTGAAAGTCAAGT 57.784 29.630 0.00 0.00 43.51 3.16
797 839 0.338120 AGAACAGAGGGAGGGAGAGG 59.662 60.000 0.00 0.00 0.00 3.69
800 842 1.287739 AGAGAGAACAGAGGGAGGGAG 59.712 57.143 0.00 0.00 0.00 4.30
801 843 1.006519 CAGAGAGAACAGAGGGAGGGA 59.993 57.143 0.00 0.00 0.00 4.20
802 844 1.484038 CAGAGAGAACAGAGGGAGGG 58.516 60.000 0.00 0.00 0.00 4.30
803 845 0.823460 GCAGAGAGAACAGAGGGAGG 59.177 60.000 0.00 0.00 0.00 4.30
834 876 1.452108 CCGGATTGGCCAACTCCTC 60.452 63.158 28.98 20.82 35.94 3.71
835 877 1.923395 TCCGGATTGGCCAACTCCT 60.923 57.895 28.98 15.04 37.80 3.69
836 878 1.749258 GTCCGGATTGGCCAACTCC 60.749 63.158 23.27 24.71 37.80 3.85
918 971 1.381599 AGGGAGGAGCAGAGCAGAG 60.382 63.158 0.00 0.00 0.00 3.35
919 972 1.381056 GAGGGAGGAGCAGAGCAGA 60.381 63.158 0.00 0.00 0.00 4.26
920 973 2.433994 GGAGGGAGGAGCAGAGCAG 61.434 68.421 0.00 0.00 0.00 4.24
921 974 2.364842 GGAGGGAGGAGCAGAGCA 60.365 66.667 0.00 0.00 0.00 4.26
922 975 3.160748 GGGAGGGAGGAGCAGAGC 61.161 72.222 0.00 0.00 0.00 4.09
1177 1239 1.139256 TGTACACCAAGCAACCGAGAA 59.861 47.619 0.00 0.00 0.00 2.87
1218 1280 1.004979 CCCCCAAATCCAACCGAGTTA 59.995 52.381 0.00 0.00 0.00 2.24
1273 1335 2.356227 GGGAGCTCCTAGGGAAACAAAG 60.356 54.545 31.36 0.00 35.95 2.77
1316 1381 0.921347 CTAGAAACGCAATCGGGTCG 59.079 55.000 0.00 0.00 37.30 4.79
1466 1532 3.988379 TGCTGACTGGAAAATGTTCAC 57.012 42.857 0.00 0.00 35.25 3.18
1506 1572 2.587194 CCCCGAATCGAGCTGCTG 60.587 66.667 7.01 0.00 0.00 4.41
1564 1631 1.227823 CCACGTGAAACCCAGAGCA 60.228 57.895 19.30 0.00 0.00 4.26
1595 1663 1.877443 GTGGCCAGAAGCTAAACGAAA 59.123 47.619 5.11 0.00 43.05 3.46
1598 1666 0.321653 AGGTGGCCAGAAGCTAAACG 60.322 55.000 5.11 0.00 43.05 3.60
1601 1669 2.238521 CAAAAGGTGGCCAGAAGCTAA 58.761 47.619 5.11 0.00 43.05 3.09
1608 1676 0.465287 AACAAGCAAAAGGTGGCCAG 59.535 50.000 5.11 0.00 0.00 4.85
1616 1684 3.803778 CAGTAGGCCAAAACAAGCAAAAG 59.196 43.478 5.01 0.00 0.00 2.27
1618 1686 3.027412 TCAGTAGGCCAAAACAAGCAAA 58.973 40.909 5.01 0.00 0.00 3.68
1631 1699 6.690194 AGTCAAATCATGAATTCAGTAGGC 57.310 37.500 14.54 2.43 40.50 3.93
1633 1701 7.966753 CACCAAGTCAAATCATGAATTCAGTAG 59.033 37.037 14.54 6.64 42.33 2.57
1636 1704 6.071784 TCCACCAAGTCAAATCATGAATTCAG 60.072 38.462 14.54 6.44 42.33 3.02
1645 1718 6.047870 CACAAATTTCCACCAAGTCAAATCA 58.952 36.000 0.00 0.00 0.00 2.57
1646 1719 6.018832 CACACAAATTTCCACCAAGTCAAATC 60.019 38.462 0.00 0.00 0.00 2.17
1649 1722 4.382470 CCACACAAATTTCCACCAAGTCAA 60.382 41.667 0.00 0.00 0.00 3.18
1693 1815 4.825085 TGTACTTTGAATTTGTCTCCCACC 59.175 41.667 0.00 0.00 0.00 4.61
1702 1824 5.977129 AGGACGCTTTTGTACTTTGAATTTG 59.023 36.000 0.00 0.00 24.11 2.32
1709 1831 2.542595 CGACAGGACGCTTTTGTACTTT 59.457 45.455 0.00 0.00 27.68 2.66
1715 1837 2.480419 AGAATTCGACAGGACGCTTTTG 59.520 45.455 0.00 0.00 0.00 2.44
1779 1901 4.310769 CAAGACACTTTGGTACAGAGGAG 58.689 47.826 0.00 0.00 45.63 3.69
1782 1904 3.733337 AGCAAGACACTTTGGTACAGAG 58.267 45.455 0.00 0.00 46.85 3.35
1824 1946 5.185454 TGTCCTACATAGTCAGCAATTTGG 58.815 41.667 0.00 0.00 0.00 3.28
1937 2059 5.112686 GTCTCCTGTGGTCTTTATGATGAC 58.887 45.833 0.00 0.00 0.00 3.06
2291 2413 7.489160 ACAAGGAACAAAACATAAGGAAAGAC 58.511 34.615 0.00 0.00 0.00 3.01
2341 2465 5.570320 AGTTTAACAGTGATGGGTTAGCAT 58.430 37.500 0.00 0.00 31.71 3.79
2415 2539 4.355549 TCTAATTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2416 2540 3.178865 TCTAATTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2417 2541 3.906720 TCTAATTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2418 2542 3.778075 TCATCTAATTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2419 2543 3.877508 GTCATCTAATTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2420 2544 4.770795 AGTCATCTAATTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
2421 2545 5.419542 TGAGTCATCTAATTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
2422 2546 5.414789 TGAGTCATCTAATTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
2423 2547 5.643777 AGTTGAGTCATCTAATTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
2424 2548 6.727824 AGTTGAGTCATCTAATTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
2425 2549 8.352942 ACAAAGTTGAGTCATCTAATTTGGAAC 58.647 33.333 16.35 0.00 44.71 3.62
2426 2550 8.463930 ACAAAGTTGAGTCATCTAATTTGGAA 57.536 30.769 16.35 0.00 44.71 3.53
2427 2551 8.999431 GTACAAAGTTGAGTCATCTAATTTGGA 58.001 33.333 16.35 8.48 44.71 3.53
2428 2552 9.003658 AGTACAAAGTTGAGTCATCTAATTTGG 57.996 33.333 16.35 0.00 44.71 3.28
2456 2580 8.758715 CGCTTTGTACTAACTTTGTACTAAAGT 58.241 33.333 21.60 14.04 41.82 2.66
2457 2581 8.758715 ACGCTTTGTACTAACTTTGTACTAAAG 58.241 33.333 19.46 19.46 40.44 1.85
2458 2582 8.542132 CACGCTTTGTACTAACTTTGTACTAAA 58.458 33.333 12.73 10.53 40.44 1.85
2459 2583 7.169645 CCACGCTTTGTACTAACTTTGTACTAA 59.830 37.037 12.73 10.75 40.44 2.24
2460 2584 6.642131 CCACGCTTTGTACTAACTTTGTACTA 59.358 38.462 12.73 4.86 40.44 1.82
2461 2585 5.464389 CCACGCTTTGTACTAACTTTGTACT 59.536 40.000 12.73 0.00 40.44 2.73
2462 2586 5.333568 CCCACGCTTTGTACTAACTTTGTAC 60.334 44.000 6.58 6.58 40.27 2.90
2463 2587 4.751098 CCCACGCTTTGTACTAACTTTGTA 59.249 41.667 0.00 0.00 0.00 2.41
2464 2588 3.562557 CCCACGCTTTGTACTAACTTTGT 59.437 43.478 0.00 0.00 0.00 2.83
2465 2589 3.562557 ACCCACGCTTTGTACTAACTTTG 59.437 43.478 0.00 0.00 0.00 2.77
2466 2590 3.811497 GACCCACGCTTTGTACTAACTTT 59.189 43.478 0.00 0.00 0.00 2.66
2467 2591 3.181463 TGACCCACGCTTTGTACTAACTT 60.181 43.478 0.00 0.00 0.00 2.66
2468 2592 2.366266 TGACCCACGCTTTGTACTAACT 59.634 45.455 0.00 0.00 0.00 2.24
2469 2593 2.758009 TGACCCACGCTTTGTACTAAC 58.242 47.619 0.00 0.00 0.00 2.34
2470 2594 3.259876 AGATGACCCACGCTTTGTACTAA 59.740 43.478 0.00 0.00 0.00 2.24
2471 2595 2.829720 AGATGACCCACGCTTTGTACTA 59.170 45.455 0.00 0.00 0.00 1.82
2472 2596 1.623811 AGATGACCCACGCTTTGTACT 59.376 47.619 0.00 0.00 0.00 2.73
2473 2597 2.094762 AGATGACCCACGCTTTGTAC 57.905 50.000 0.00 0.00 0.00 2.90
2474 2598 4.481368 AATAGATGACCCACGCTTTGTA 57.519 40.909 0.00 0.00 0.00 2.41
2475 2599 3.350219 AATAGATGACCCACGCTTTGT 57.650 42.857 0.00 0.00 0.00 2.83
2476 2600 4.414852 CAAAATAGATGACCCACGCTTTG 58.585 43.478 0.00 0.00 0.00 2.77
2477 2601 3.443681 CCAAAATAGATGACCCACGCTTT 59.556 43.478 0.00 0.00 0.00 3.51
2478 2602 3.016736 CCAAAATAGATGACCCACGCTT 58.983 45.455 0.00 0.00 0.00 4.68
2479 2603 2.238646 TCCAAAATAGATGACCCACGCT 59.761 45.455 0.00 0.00 0.00 5.07
2480 2604 2.639065 TCCAAAATAGATGACCCACGC 58.361 47.619 0.00 0.00 0.00 5.34
2481 2605 3.063452 CGTTCCAAAATAGATGACCCACG 59.937 47.826 0.00 0.00 0.00 4.94
2482 2606 3.377172 CCGTTCCAAAATAGATGACCCAC 59.623 47.826 0.00 0.00 0.00 4.61
2483 2607 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2484 2608 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2485 2609 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2486 2610 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2487 2611 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2488 2612 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2489 2613 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2490 2614 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2491 2615 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2492 2616 6.555738 TGATATACTCCCTCCGTTCCAAAATA 59.444 38.462 0.00 0.00 0.00 1.40
2493 2617 5.368523 TGATATACTCCCTCCGTTCCAAAAT 59.631 40.000 0.00 0.00 0.00 1.82
2494 2618 4.717778 TGATATACTCCCTCCGTTCCAAAA 59.282 41.667 0.00 0.00 0.00 2.44
2495 2619 4.100498 GTGATATACTCCCTCCGTTCCAAA 59.900 45.833 0.00 0.00 0.00 3.28
2496 2620 3.640029 GTGATATACTCCCTCCGTTCCAA 59.360 47.826 0.00 0.00 0.00 3.53
2497 2621 3.228453 GTGATATACTCCCTCCGTTCCA 58.772 50.000 0.00 0.00 0.00 3.53
2498 2622 3.228453 TGTGATATACTCCCTCCGTTCC 58.772 50.000 0.00 0.00 0.00 3.62
2499 2623 4.142790 TCTGTGATATACTCCCTCCGTTC 58.857 47.826 0.00 0.00 0.00 3.95
2500 2624 4.180377 TCTGTGATATACTCCCTCCGTT 57.820 45.455 0.00 0.00 0.00 4.44
2501 2625 3.878237 TCTGTGATATACTCCCTCCGT 57.122 47.619 0.00 0.00 0.00 4.69
2502 2626 4.619394 GCAATCTGTGATATACTCCCTCCG 60.619 50.000 0.00 0.00 0.00 4.63
2503 2627 4.530161 AGCAATCTGTGATATACTCCCTCC 59.470 45.833 0.00 0.00 0.00 4.30
2504 2628 5.736951 AGCAATCTGTGATATACTCCCTC 57.263 43.478 0.00 0.00 0.00 4.30
2505 2629 7.805083 AATAGCAATCTGTGATATACTCCCT 57.195 36.000 0.00 0.00 37.86 4.20
2506 2630 8.725148 CAAAATAGCAATCTGTGATATACTCCC 58.275 37.037 0.00 0.00 37.86 4.30
2507 2631 9.494271 TCAAAATAGCAATCTGTGATATACTCC 57.506 33.333 0.00 0.00 37.86 3.85
2587 2715 9.147732 GGATTGGATGGGTTTTAGATAAGATTT 57.852 33.333 0.00 0.00 0.00 2.17
2588 2716 7.730332 GGGATTGGATGGGTTTTAGATAAGATT 59.270 37.037 0.00 0.00 0.00 2.40
2589 2717 7.146960 TGGGATTGGATGGGTTTTAGATAAGAT 60.147 37.037 0.00 0.00 0.00 2.40
2596 2724 3.701040 CAGTGGGATTGGATGGGTTTTAG 59.299 47.826 0.00 0.00 0.00 1.85
2692 2820 8.091449 CACTATTGTTAAGCCCAAAATTAACCA 58.909 33.333 5.62 0.00 39.87 3.67
2702 2830 5.329399 ACCAATTCACTATTGTTAAGCCCA 58.671 37.500 0.00 0.00 41.74 5.36
2722 2850 5.946972 TCTGAAGTTAACAACCTGAAAACCA 59.053 36.000 8.61 0.00 0.00 3.67
2723 2851 6.445357 TCTGAAGTTAACAACCTGAAAACC 57.555 37.500 8.61 0.00 0.00 3.27
2724 2852 6.317893 TCCTCTGAAGTTAACAACCTGAAAAC 59.682 38.462 8.61 0.00 0.00 2.43
3050 3178 3.322828 AGAGGCACATGCAAAATTGAAGT 59.677 39.130 6.15 0.00 44.36 3.01
3078 3206 7.607991 ACAAAATAGACACTTGAACCTATCAGG 59.392 37.037 0.00 0.00 39.77 3.86
3079 3207 8.446273 CACAAAATAGACACTTGAACCTATCAG 58.554 37.037 0.00 0.00 39.77 2.90
3142 3270 5.981315 CAGAATTGAACACAACTGCATCTTT 59.019 36.000 0.00 0.00 0.00 2.52
3202 3330 4.079253 GGGAGCATGTTAAGAAACCTCAA 58.921 43.478 0.00 0.00 34.49 3.02
3203 3331 3.330701 AGGGAGCATGTTAAGAAACCTCA 59.669 43.478 0.00 0.00 34.49 3.86
3204 3332 3.942115 GAGGGAGCATGTTAAGAAACCTC 59.058 47.826 0.00 0.00 34.49 3.85
3205 3333 3.589288 AGAGGGAGCATGTTAAGAAACCT 59.411 43.478 0.00 0.00 34.49 3.50
3206 3334 3.956744 AGAGGGAGCATGTTAAGAAACC 58.043 45.455 0.00 0.00 34.49 3.27
3207 3335 5.354513 GGTAAGAGGGAGCATGTTAAGAAAC 59.645 44.000 0.00 0.00 36.07 2.78
3208 3336 5.250774 AGGTAAGAGGGAGCATGTTAAGAAA 59.749 40.000 0.00 0.00 0.00 2.52
3209 3337 4.783227 AGGTAAGAGGGAGCATGTTAAGAA 59.217 41.667 0.00 0.00 0.00 2.52
3210 3338 4.362677 AGGTAAGAGGGAGCATGTTAAGA 58.637 43.478 0.00 0.00 0.00 2.10
3211 3339 4.443598 GGAGGTAAGAGGGAGCATGTTAAG 60.444 50.000 0.00 0.00 0.00 1.85
3212 3340 3.454812 GGAGGTAAGAGGGAGCATGTTAA 59.545 47.826 0.00 0.00 0.00 2.01
3213 3341 3.039011 GGAGGTAAGAGGGAGCATGTTA 58.961 50.000 0.00 0.00 0.00 2.41
3214 3342 1.840635 GGAGGTAAGAGGGAGCATGTT 59.159 52.381 0.00 0.00 0.00 2.71
3215 3343 1.501582 GGAGGTAAGAGGGAGCATGT 58.498 55.000 0.00 0.00 0.00 3.21
3216 3344 0.761802 GGGAGGTAAGAGGGAGCATG 59.238 60.000 0.00 0.00 0.00 4.06
3217 3345 0.400670 GGGGAGGTAAGAGGGAGCAT 60.401 60.000 0.00 0.00 0.00 3.79
3218 3346 1.003051 GGGGAGGTAAGAGGGAGCA 59.997 63.158 0.00 0.00 0.00 4.26
3219 3347 0.326713 AAGGGGAGGTAAGAGGGAGC 60.327 60.000 0.00 0.00 0.00 4.70
3220 3348 2.272074 AAAGGGGAGGTAAGAGGGAG 57.728 55.000 0.00 0.00 0.00 4.30
3221 3349 2.157911 TGAAAAGGGGAGGTAAGAGGGA 60.158 50.000 0.00 0.00 0.00 4.20
3222 3350 2.026169 GTGAAAAGGGGAGGTAAGAGGG 60.026 54.545 0.00 0.00 0.00 4.30
3223 3351 2.913617 AGTGAAAAGGGGAGGTAAGAGG 59.086 50.000 0.00 0.00 0.00 3.69
3224 3352 4.041691 TCAAGTGAAAAGGGGAGGTAAGAG 59.958 45.833 0.00 0.00 0.00 2.85
3225 3353 3.977999 TCAAGTGAAAAGGGGAGGTAAGA 59.022 43.478 0.00 0.00 0.00 2.10
3226 3354 4.041691 TCTCAAGTGAAAAGGGGAGGTAAG 59.958 45.833 0.00 0.00 0.00 2.34
3227 3355 3.977999 TCTCAAGTGAAAAGGGGAGGTAA 59.022 43.478 0.00 0.00 0.00 2.85
3228 3356 3.583086 CTCTCAAGTGAAAAGGGGAGGTA 59.417 47.826 0.00 0.00 0.00 3.08
3229 3357 2.373502 CTCTCAAGTGAAAAGGGGAGGT 59.626 50.000 0.00 0.00 0.00 3.85
3230 3358 2.290577 CCTCTCAAGTGAAAAGGGGAGG 60.291 54.545 0.00 0.00 31.87 4.30
3231 3359 2.373502 ACCTCTCAAGTGAAAAGGGGAG 59.626 50.000 11.95 0.00 34.07 4.30
3232 3360 2.418669 ACCTCTCAAGTGAAAAGGGGA 58.581 47.619 11.95 0.00 34.07 4.81
3233 3361 2.959465 ACCTCTCAAGTGAAAAGGGG 57.041 50.000 11.95 0.28 36.68 4.79
3234 3362 5.221742 ACTCTTACCTCTCAAGTGAAAAGGG 60.222 44.000 11.95 0.00 0.00 3.95
3235 3363 5.859495 ACTCTTACCTCTCAAGTGAAAAGG 58.141 41.667 7.53 7.53 0.00 3.11
3236 3364 7.434492 TGTACTCTTACCTCTCAAGTGAAAAG 58.566 38.462 0.00 0.00 0.00 2.27
3237 3365 7.356089 TGTACTCTTACCTCTCAAGTGAAAA 57.644 36.000 0.00 0.00 0.00 2.29
3238 3366 6.971726 TGTACTCTTACCTCTCAAGTGAAA 57.028 37.500 0.00 0.00 0.00 2.69
3239 3367 6.971726 TTGTACTCTTACCTCTCAAGTGAA 57.028 37.500 0.00 0.00 0.00 3.18
3240 3368 6.971726 TTTGTACTCTTACCTCTCAAGTGA 57.028 37.500 0.00 0.00 0.00 3.41
3241 3369 9.360093 CTATTTTGTACTCTTACCTCTCAAGTG 57.640 37.037 0.00 0.00 0.00 3.16
3242 3370 9.310449 TCTATTTTGTACTCTTACCTCTCAAGT 57.690 33.333 0.00 0.00 0.00 3.16
3245 3373 9.702253 AGATCTATTTTGTACTCTTACCTCTCA 57.298 33.333 0.00 0.00 0.00 3.27
3246 3374 9.959749 CAGATCTATTTTGTACTCTTACCTCTC 57.040 37.037 0.00 0.00 0.00 3.20
3247 3375 9.702253 TCAGATCTATTTTGTACTCTTACCTCT 57.298 33.333 0.00 0.00 0.00 3.69
3248 3376 9.959749 CTCAGATCTATTTTGTACTCTTACCTC 57.040 37.037 0.00 0.00 0.00 3.85
3249 3377 8.417884 GCTCAGATCTATTTTGTACTCTTACCT 58.582 37.037 0.00 0.00 0.00 3.08
3250 3378 7.654116 GGCTCAGATCTATTTTGTACTCTTACC 59.346 40.741 0.00 0.00 0.00 2.85
3251 3379 7.380065 CGGCTCAGATCTATTTTGTACTCTTAC 59.620 40.741 0.00 0.00 0.00 2.34
3252 3380 7.068348 ACGGCTCAGATCTATTTTGTACTCTTA 59.932 37.037 0.00 0.00 0.00 2.10
3253 3381 6.127310 ACGGCTCAGATCTATTTTGTACTCTT 60.127 38.462 0.00 0.00 0.00 2.85
3254 3382 5.361285 ACGGCTCAGATCTATTTTGTACTCT 59.639 40.000 0.00 0.00 0.00 3.24
3255 3383 5.593010 ACGGCTCAGATCTATTTTGTACTC 58.407 41.667 0.00 0.00 0.00 2.59
3256 3384 5.599999 ACGGCTCAGATCTATTTTGTACT 57.400 39.130 0.00 0.00 0.00 2.73
3257 3385 5.006746 CCAACGGCTCAGATCTATTTTGTAC 59.993 44.000 0.00 0.00 0.00 2.90
3258 3386 5.116180 CCAACGGCTCAGATCTATTTTGTA 58.884 41.667 0.00 0.00 0.00 2.41
3259 3387 3.941483 CCAACGGCTCAGATCTATTTTGT 59.059 43.478 0.00 0.00 0.00 2.83
3260 3388 3.941483 ACCAACGGCTCAGATCTATTTTG 59.059 43.478 0.00 0.00 0.00 2.44
3261 3389 4.222124 ACCAACGGCTCAGATCTATTTT 57.778 40.909 0.00 0.00 0.00 1.82
3262 3390 3.914426 ACCAACGGCTCAGATCTATTT 57.086 42.857 0.00 0.00 0.00 1.40
3263 3391 3.535561 CAACCAACGGCTCAGATCTATT 58.464 45.455 0.00 0.00 0.00 1.73
3264 3392 2.743183 GCAACCAACGGCTCAGATCTAT 60.743 50.000 0.00 0.00 0.00 1.98
3265 3393 1.405526 GCAACCAACGGCTCAGATCTA 60.406 52.381 0.00 0.00 0.00 1.98
3266 3394 0.674895 GCAACCAACGGCTCAGATCT 60.675 55.000 0.00 0.00 0.00 2.75
3267 3395 0.955428 TGCAACCAACGGCTCAGATC 60.955 55.000 0.00 0.00 0.00 2.75
3268 3396 0.322816 ATGCAACCAACGGCTCAGAT 60.323 50.000 0.00 0.00 0.00 2.90
3269 3397 0.537143 AATGCAACCAACGGCTCAGA 60.537 50.000 0.00 0.00 0.00 3.27
3270 3398 0.387622 CAATGCAACCAACGGCTCAG 60.388 55.000 0.00 0.00 0.00 3.35
3271 3399 0.821301 TCAATGCAACCAACGGCTCA 60.821 50.000 0.00 0.00 0.00 4.26
3272 3400 0.109597 CTCAATGCAACCAACGGCTC 60.110 55.000 0.00 0.00 0.00 4.70
3273 3401 0.823356 ACTCAATGCAACCAACGGCT 60.823 50.000 0.00 0.00 0.00 5.52
3274 3402 0.878416 TACTCAATGCAACCAACGGC 59.122 50.000 0.00 0.00 0.00 5.68
3275 3403 2.095768 CACTACTCAATGCAACCAACGG 60.096 50.000 0.00 0.00 0.00 4.44
3276 3404 2.095768 CCACTACTCAATGCAACCAACG 60.096 50.000 0.00 0.00 0.00 4.10
3277 3405 2.228822 CCCACTACTCAATGCAACCAAC 59.771 50.000 0.00 0.00 0.00 3.77
3278 3406 2.158534 ACCCACTACTCAATGCAACCAA 60.159 45.455 0.00 0.00 0.00 3.67
3279 3407 1.423541 ACCCACTACTCAATGCAACCA 59.576 47.619 0.00 0.00 0.00 3.67
3280 3408 2.200373 ACCCACTACTCAATGCAACC 57.800 50.000 0.00 0.00 0.00 3.77
3281 3409 3.568007 TCAAACCCACTACTCAATGCAAC 59.432 43.478 0.00 0.00 0.00 4.17
3282 3410 3.826524 TCAAACCCACTACTCAATGCAA 58.173 40.909 0.00 0.00 0.00 4.08
3283 3411 3.500448 TCAAACCCACTACTCAATGCA 57.500 42.857 0.00 0.00 0.00 3.96
3284 3412 6.151144 AGTTAATCAAACCCACTACTCAATGC 59.849 38.462 0.00 0.00 39.03 3.56
3285 3413 7.607991 AGAGTTAATCAAACCCACTACTCAATG 59.392 37.037 0.00 0.00 39.03 2.82
3286 3414 7.690256 AGAGTTAATCAAACCCACTACTCAAT 58.310 34.615 0.00 0.00 39.03 2.57
3287 3415 7.074653 AGAGTTAATCAAACCCACTACTCAA 57.925 36.000 0.00 0.00 39.03 3.02
3288 3416 6.681729 AGAGTTAATCAAACCCACTACTCA 57.318 37.500 0.00 0.00 39.03 3.41
3289 3417 7.548427 GGTAAGAGTTAATCAAACCCACTACTC 59.452 40.741 0.00 0.00 39.03 2.59
3290 3418 7.237055 AGGTAAGAGTTAATCAAACCCACTACT 59.763 37.037 0.94 0.00 39.03 2.57
3291 3419 7.392418 AGGTAAGAGTTAATCAAACCCACTAC 58.608 38.462 0.94 0.00 39.03 2.73
3292 3420 7.563724 AGGTAAGAGTTAATCAAACCCACTA 57.436 36.000 0.94 0.00 39.03 2.74
3293 3421 6.449830 AGGTAAGAGTTAATCAAACCCACT 57.550 37.500 0.94 0.00 39.03 4.00
3294 3422 6.940867 AGAAGGTAAGAGTTAATCAAACCCAC 59.059 38.462 0.94 0.00 39.03 4.61
3295 3423 7.086685 AGAAGGTAAGAGTTAATCAAACCCA 57.913 36.000 0.94 0.00 39.03 4.51
3296 3424 7.997773 AAGAAGGTAAGAGTTAATCAAACCC 57.002 36.000 0.94 0.00 39.03 4.11
3297 3425 8.944029 GGTAAGAAGGTAAGAGTTAATCAAACC 58.056 37.037 0.00 0.00 39.03 3.27
3298 3426 9.722184 AGGTAAGAAGGTAAGAGTTAATCAAAC 57.278 33.333 0.00 0.00 38.46 2.93
3299 3427 9.720769 CAGGTAAGAAGGTAAGAGTTAATCAAA 57.279 33.333 0.00 0.00 0.00 2.69
3300 3428 9.096823 TCAGGTAAGAAGGTAAGAGTTAATCAA 57.903 33.333 0.00 0.00 0.00 2.57
3301 3429 8.660295 TCAGGTAAGAAGGTAAGAGTTAATCA 57.340 34.615 0.00 0.00 0.00 2.57
3305 3433 8.975295 GGTAATCAGGTAAGAAGGTAAGAGTTA 58.025 37.037 0.00 0.00 0.00 2.24
3306 3434 7.679025 AGGTAATCAGGTAAGAAGGTAAGAGTT 59.321 37.037 0.00 0.00 0.00 3.01
3307 3435 7.190501 AGGTAATCAGGTAAGAAGGTAAGAGT 58.809 38.462 0.00 0.00 0.00 3.24
3308 3436 7.201929 GGAGGTAATCAGGTAAGAAGGTAAGAG 60.202 44.444 0.00 0.00 0.00 2.85
3309 3437 6.610425 GGAGGTAATCAGGTAAGAAGGTAAGA 59.390 42.308 0.00 0.00 0.00 2.10
3310 3438 6.183360 GGGAGGTAATCAGGTAAGAAGGTAAG 60.183 46.154 0.00 0.00 0.00 2.34
3311 3439 5.664457 GGGAGGTAATCAGGTAAGAAGGTAA 59.336 44.000 0.00 0.00 0.00 2.85
3312 3440 5.214293 GGGAGGTAATCAGGTAAGAAGGTA 58.786 45.833 0.00 0.00 0.00 3.08
3313 3441 4.038633 GGGAGGTAATCAGGTAAGAAGGT 58.961 47.826 0.00 0.00 0.00 3.50
3314 3442 4.037927 TGGGAGGTAATCAGGTAAGAAGG 58.962 47.826 0.00 0.00 0.00 3.46
3315 3443 5.131142 ACATGGGAGGTAATCAGGTAAGAAG 59.869 44.000 0.00 0.00 0.00 2.85
3316 3444 5.036916 ACATGGGAGGTAATCAGGTAAGAA 58.963 41.667 0.00 0.00 0.00 2.52
3317 3445 4.408921 CACATGGGAGGTAATCAGGTAAGA 59.591 45.833 0.00 0.00 0.00 2.10
3318 3446 4.408921 TCACATGGGAGGTAATCAGGTAAG 59.591 45.833 0.00 0.00 0.00 2.34
3319 3447 4.367166 TCACATGGGAGGTAATCAGGTAA 58.633 43.478 0.00 0.00 0.00 2.85
3320 3448 4.002256 TCACATGGGAGGTAATCAGGTA 57.998 45.455 0.00 0.00 0.00 3.08
3321 3449 2.845659 TCACATGGGAGGTAATCAGGT 58.154 47.619 0.00 0.00 0.00 4.00
3322 3450 3.931907 TTCACATGGGAGGTAATCAGG 57.068 47.619 0.00 0.00 0.00 3.86
3323 3451 5.500234 TCTTTTCACATGGGAGGTAATCAG 58.500 41.667 0.00 0.00 0.00 2.90
3324 3452 5.500234 CTCTTTTCACATGGGAGGTAATCA 58.500 41.667 0.00 0.00 0.00 2.57
3325 3453 4.884164 CCTCTTTTCACATGGGAGGTAATC 59.116 45.833 0.00 0.00 38.83 1.75
3326 3454 4.325344 CCCTCTTTTCACATGGGAGGTAAT 60.325 45.833 0.00 0.00 41.20 1.89
3327 3455 3.010138 CCCTCTTTTCACATGGGAGGTAA 59.990 47.826 0.00 0.00 41.20 2.85
3328 3456 2.576191 CCCTCTTTTCACATGGGAGGTA 59.424 50.000 0.00 0.00 41.20 3.08
3329 3457 1.355720 CCCTCTTTTCACATGGGAGGT 59.644 52.381 0.00 0.00 41.20 3.85
3330 3458 1.341383 CCCCTCTTTTCACATGGGAGG 60.341 57.143 0.00 0.00 42.10 4.30
3331 3459 1.341383 CCCCCTCTTTTCACATGGGAG 60.341 57.143 0.00 0.00 40.23 4.30
3332 3460 0.704076 CCCCCTCTTTTCACATGGGA 59.296 55.000 0.00 0.00 40.23 4.37
3333 3461 0.409484 ACCCCCTCTTTTCACATGGG 59.591 55.000 0.00 0.00 37.68 4.00
3334 3462 3.010138 TCTTACCCCCTCTTTTCACATGG 59.990 47.826 0.00 0.00 0.00 3.66
3335 3463 4.265073 CTCTTACCCCCTCTTTTCACATG 58.735 47.826 0.00 0.00 0.00 3.21
3336 3464 3.267031 CCTCTTACCCCCTCTTTTCACAT 59.733 47.826 0.00 0.00 0.00 3.21
3337 3465 2.642807 CCTCTTACCCCCTCTTTTCACA 59.357 50.000 0.00 0.00 0.00 3.58
3338 3466 2.026169 CCCTCTTACCCCCTCTTTTCAC 60.026 54.545 0.00 0.00 0.00 3.18
3339 3467 2.157911 TCCCTCTTACCCCCTCTTTTCA 60.158 50.000 0.00 0.00 0.00 2.69
3340 3468 2.506231 CTCCCTCTTACCCCCTCTTTTC 59.494 54.545 0.00 0.00 0.00 2.29
3341 3469 2.563406 CTCCCTCTTACCCCCTCTTTT 58.437 52.381 0.00 0.00 0.00 2.27
3342 3470 1.906692 GCTCCCTCTTACCCCCTCTTT 60.907 57.143 0.00 0.00 0.00 2.52
3343 3471 0.326713 GCTCCCTCTTACCCCCTCTT 60.327 60.000 0.00 0.00 0.00 2.85
3344 3472 1.315216 GCTCCCTCTTACCCCCTCT 59.685 63.158 0.00 0.00 0.00 3.69
3345 3473 0.400670 ATGCTCCCTCTTACCCCCTC 60.401 60.000 0.00 0.00 0.00 4.30
3346 3474 0.695803 CATGCTCCCTCTTACCCCCT 60.696 60.000 0.00 0.00 0.00 4.79
3347 3475 0.988678 ACATGCTCCCTCTTACCCCC 60.989 60.000 0.00 0.00 0.00 5.40
3348 3476 0.919710 AACATGCTCCCTCTTACCCC 59.080 55.000 0.00 0.00 0.00 4.95
3349 3477 3.926058 TTAACATGCTCCCTCTTACCC 57.074 47.619 0.00 0.00 0.00 3.69
3350 3478 6.564328 CAATTTTAACATGCTCCCTCTTACC 58.436 40.000 0.00 0.00 0.00 2.85
3351 3479 6.036470 GCAATTTTAACATGCTCCCTCTTAC 58.964 40.000 0.00 0.00 37.12 2.34
3352 3480 5.951747 AGCAATTTTAACATGCTCCCTCTTA 59.048 36.000 0.00 0.00 46.98 2.10
3353 3481 4.774200 AGCAATTTTAACATGCTCCCTCTT 59.226 37.500 0.00 0.00 46.98 2.85
3354 3482 4.347607 AGCAATTTTAACATGCTCCCTCT 58.652 39.130 0.00 0.00 46.98 3.69
3355 3483 4.725790 AGCAATTTTAACATGCTCCCTC 57.274 40.909 0.00 0.00 46.98 4.30
3361 3489 2.879826 AGCCGAGCAATTTTAACATGC 58.120 42.857 0.00 0.00 40.34 4.06
3362 3490 6.360681 GCTAATAGCCGAGCAATTTTAACATG 59.639 38.462 0.00 0.00 38.62 3.21
3363 3491 6.438763 GCTAATAGCCGAGCAATTTTAACAT 58.561 36.000 0.00 0.00 38.62 2.71
3364 3492 5.816919 GCTAATAGCCGAGCAATTTTAACA 58.183 37.500 0.00 0.00 38.62 2.41
3425 3555 5.419155 TCAACATGGTGTGGTAAAAGTTCAA 59.581 36.000 11.27 0.00 0.00 2.69
3427 3557 5.508200 TCAACATGGTGTGGTAAAAGTTC 57.492 39.130 11.27 0.00 0.00 3.01
3428 3558 5.923733 TTCAACATGGTGTGGTAAAAGTT 57.076 34.783 11.27 0.00 0.00 2.66
3429 3559 7.775053 ATATTCAACATGGTGTGGTAAAAGT 57.225 32.000 11.27 0.00 0.00 2.66
3430 3560 9.487790 AAAATATTCAACATGGTGTGGTAAAAG 57.512 29.630 11.27 0.00 0.00 2.27
3802 3935 0.250901 CCAATAGCCCCCGGAATGAG 60.251 60.000 0.73 0.00 0.00 2.90
3877 4011 6.184068 TGCCTAACAAAATATGGCTAGTTCA 58.816 36.000 0.00 0.00 43.57 3.18
3894 4028 7.359181 GCACAAACACAGAAATTATTGCCTAAC 60.359 37.037 0.00 0.00 0.00 2.34
3927 4062 8.759641 TCTTGACGTCTCGTATACTATAAGAAC 58.240 37.037 17.92 0.00 41.37 3.01
3934 4069 5.292834 CCACTTCTTGACGTCTCGTATACTA 59.707 44.000 17.92 0.00 41.37 1.82
3987 4122 2.263540 GCCGGCGTCTTGACCTAA 59.736 61.111 12.58 0.00 0.00 2.69
4025 4160 1.359848 CATCGAAGAAACCAGGTCCG 58.640 55.000 0.00 0.00 43.58 4.79
4040 4175 4.152402 CGGATTTCCTATTGTAAGCCATCG 59.848 45.833 0.00 0.00 0.00 3.84
4049 4184 1.956477 GCATGGCGGATTTCCTATTGT 59.044 47.619 0.00 0.00 0.00 2.71
4056 4191 1.620822 ATTAGGGCATGGCGGATTTC 58.379 50.000 13.76 0.00 0.00 2.17
4062 4197 3.566261 CGCTATTAGGGCATGGCG 58.434 61.111 13.76 3.67 45.91 5.69
4219 4359 4.864806 TCTTCCAGAACTCGATGAAAATCG 59.135 41.667 1.75 1.75 44.73 3.34
4253 4393 8.572185 ACATTACAATGTTACAACAATACTGCA 58.428 29.630 1.70 0.00 46.95 4.41
4311 4451 4.201920 GCGGATTCAGAACTGGTTATTTCC 60.202 45.833 1.93 0.00 0.00 3.13
4321 4461 1.537202 GCAAACAGCGGATTCAGAACT 59.463 47.619 0.00 0.00 0.00 3.01
4379 4519 0.966920 TGAGAGACGTCCTGGAAACC 59.033 55.000 13.01 0.00 0.00 3.27
4403 4543 0.373716 GCACAAGCGTGGTAGCATAC 59.626 55.000 4.26 0.00 43.81 2.39
4503 4643 5.632347 CGTTTAGATCACTACTTTTCCACGT 59.368 40.000 0.00 0.00 0.00 4.49
4507 4647 6.100668 AGAGCGTTTAGATCACTACTTTTCC 58.899 40.000 0.00 0.00 37.82 3.13
4508 4648 7.583860 AAGAGCGTTTAGATCACTACTTTTC 57.416 36.000 0.00 0.00 37.82 2.29
4523 4663 8.979574 CCTCGATAAAGAAATATAAGAGCGTTT 58.020 33.333 0.00 0.00 0.00 3.60
4524 4664 7.599245 CCCTCGATAAAGAAATATAAGAGCGTT 59.401 37.037 0.00 0.00 0.00 4.84
4525 4665 7.039923 TCCCTCGATAAAGAAATATAAGAGCGT 60.040 37.037 0.00 0.00 0.00 5.07
4526 4666 7.313646 TCCCTCGATAAAGAAATATAAGAGCG 58.686 38.462 0.00 0.00 0.00 5.03
4527 4667 8.308207 ACTCCCTCGATAAAGAAATATAAGAGC 58.692 37.037 0.00 0.00 0.00 4.09
4530 4670 9.857957 GGTACTCCCTCGATAAAGAAATATAAG 57.142 37.037 0.00 0.00 0.00 1.73
4531 4671 9.597681 AGGTACTCCCTCGATAAAGAAATATAA 57.402 33.333 0.00 0.00 40.71 0.98
4532 4672 9.597681 AAGGTACTCCCTCGATAAAGAAATATA 57.402 33.333 0.00 0.00 45.47 0.86
4533 4673 8.368668 CAAGGTACTCCCTCGATAAAGAAATAT 58.631 37.037 0.00 0.00 45.47 1.28
4534 4674 7.201974 CCAAGGTACTCCCTCGATAAAGAAATA 60.202 40.741 0.00 0.00 45.47 1.40
4535 4675 6.408206 CCAAGGTACTCCCTCGATAAAGAAAT 60.408 42.308 0.00 0.00 45.47 2.17
4536 4676 5.105064 CCAAGGTACTCCCTCGATAAAGAAA 60.105 44.000 0.00 0.00 45.47 2.52
4537 4677 4.404715 CCAAGGTACTCCCTCGATAAAGAA 59.595 45.833 0.00 0.00 45.47 2.52
4538 4678 3.958798 CCAAGGTACTCCCTCGATAAAGA 59.041 47.826 0.00 0.00 45.47 2.52
4539 4679 3.958798 TCCAAGGTACTCCCTCGATAAAG 59.041 47.826 0.00 0.00 45.47 1.85
4540 4680 3.985127 TCCAAGGTACTCCCTCGATAAA 58.015 45.455 0.00 0.00 45.47 1.40
4541 4681 3.675348 TCCAAGGTACTCCCTCGATAA 57.325 47.619 0.00 0.00 45.47 1.75
4542 4682 3.675348 TTCCAAGGTACTCCCTCGATA 57.325 47.619 0.00 0.00 45.47 2.92
4543 4683 2.544844 TTCCAAGGTACTCCCTCGAT 57.455 50.000 0.00 0.00 45.47 3.59
4544 4684 2.314071 TTTCCAAGGTACTCCCTCGA 57.686 50.000 0.00 0.00 45.47 4.04
4545 4685 3.412237 TTTTTCCAAGGTACTCCCTCG 57.588 47.619 0.00 0.00 45.47 4.63
4546 4686 3.444034 GCATTTTTCCAAGGTACTCCCTC 59.556 47.826 0.00 0.00 45.47 4.30
4548 4688 2.496070 GGCATTTTTCCAAGGTACTCCC 59.504 50.000 0.00 0.00 38.49 4.30
4549 4689 3.161866 TGGCATTTTTCCAAGGTACTCC 58.838 45.455 0.00 0.00 38.49 3.85
4550 4690 4.864704 TTGGCATTTTTCCAAGGTACTC 57.135 40.909 0.00 0.00 38.49 2.59
4568 4708 6.756074 TGCAAGACTTAAACATGACTTTTTGG 59.244 34.615 0.00 0.00 0.00 3.28
4609 4749 8.213518 TCATTTCTAACACCAAGATAGATTGC 57.786 34.615 0.00 0.00 32.45 3.56
4683 4823 0.460987 CGCTGCTCCCAACCTAAGAG 60.461 60.000 0.00 0.00 0.00 2.85
4704 4844 6.997476 TCATAATCATAAGTGCCAATGTGCTA 59.003 34.615 0.00 0.00 0.00 3.49
4777 4917 9.390795 CTTGTGAATTTAAGTTCTCATGACTTG 57.609 33.333 16.78 0.00 33.27 3.16
4779 4919 8.908786 TCTTGTGAATTTAAGTTCTCATGACT 57.091 30.769 18.79 0.00 34.09 3.41
4780 4920 9.766277 GATCTTGTGAATTTAAGTTCTCATGAC 57.234 33.333 22.18 16.06 37.96 3.06
4781 4921 9.506018 TGATCTTGTGAATTTAAGTTCTCATGA 57.494 29.630 22.07 22.07 38.71 3.07
4855 5015 5.293814 CAGTTCATTTGTCAGCCTATCAGAG 59.706 44.000 0.00 0.00 0.00 3.35
4920 5121 0.664761 CAGTCTGTGTTGCCAACCTG 59.335 55.000 4.90 0.87 0.00 4.00
5000 5201 3.367703 CCCTGATGAACTTGGAATGTTGC 60.368 47.826 0.00 0.00 34.00 4.17
5019 5220 3.844211 TCTAACAAGCAATCTACCACCCT 59.156 43.478 0.00 0.00 0.00 4.34
5021 5222 5.066505 CCAATCTAACAAGCAATCTACCACC 59.933 44.000 0.00 0.00 0.00 4.61
5024 5225 4.884164 AGCCAATCTAACAAGCAATCTACC 59.116 41.667 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.