Multiple sequence alignment - TraesCS6A01G143200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G143200 chr6A 100.000 3864 0 0 1 3864 119622182 119618319 0.000000e+00 7136
1 TraesCS6A01G143200 chr6A 82.424 660 81 16 422 1062 119638299 119637656 9.440000e-151 544
2 TraesCS6A01G143200 chr6A 85.812 437 48 6 2 426 119640385 119639951 5.890000e-123 451
3 TraesCS6A01G143200 chr6A 92.969 128 6 3 1806 1931 130415760 130415886 2.370000e-42 183
4 TraesCS6A01G143200 chr6A 94.167 120 7 0 1810 1929 475435175 475435056 2.370000e-42 183
5 TraesCS6A01G143200 chr6A 81.935 155 23 5 470 623 119640393 119640243 4.050000e-25 126
6 TraesCS6A01G143200 chr6D 89.237 1022 48 17 811 1824 99669225 99668258 0.000000e+00 1221
7 TraesCS6A01G143200 chr6D 93.909 788 31 7 2 773 99670359 99669573 0.000000e+00 1173
8 TraesCS6A01G143200 chr6D 83.223 1359 135 50 1928 3240 99668259 99666948 0.000000e+00 1160
9 TraesCS6A01G143200 chr6D 90.112 627 37 13 3250 3864 99666906 99666293 0.000000e+00 791
10 TraesCS6A01G143200 chr6D 84.514 762 83 17 422 1164 99673190 99672445 0.000000e+00 721
11 TraesCS6A01G143200 chr6D 86.697 436 44 6 1 424 99720009 99719576 4.520000e-129 472
12 TraesCS6A01G143200 chr6D 83.221 149 20 4 476 623 99720010 99719866 8.710000e-27 132
13 TraesCS6A01G143200 chr6B 92.743 813 48 8 620 1427 183762800 183761994 0.000000e+00 1164
14 TraesCS6A01G143200 chr6B 87.919 894 80 12 2019 2886 183754602 183753711 0.000000e+00 1027
15 TraesCS6A01G143200 chr6B 94.904 314 13 3 3250 3562 183753072 183752761 4.490000e-134 488
16 TraesCS6A01G143200 chr6B 92.568 296 18 2 3572 3864 183722131 183721837 4.620000e-114 422
17 TraesCS6A01G143200 chr6B 87.283 346 23 8 1484 1824 183761985 183761656 3.640000e-100 375
18 TraesCS6A01G143200 chr6B 84.527 349 39 8 286 623 183786845 183786501 8.000000e-87 331
19 TraesCS6A01G143200 chr6B 92.381 105 6 1 1928 2032 183761657 183761555 8.650000e-32 148
20 TraesCS6A01G143200 chr2A 96.552 116 4 0 1819 1934 16796698 16796583 3.940000e-45 193
21 TraesCS6A01G143200 chr2A 94.915 118 5 1 1823 1940 58791516 58791632 2.370000e-42 183
22 TraesCS6A01G143200 chr2A 92.913 127 7 2 1820 1946 116161077 116161201 2.370000e-42 183
23 TraesCS6A01G143200 chr3A 93.600 125 8 0 1814 1938 265543453 265543329 1.830000e-43 187
24 TraesCS6A01G143200 chr3A 91.852 135 7 3 1823 1955 658713161 658713029 6.590000e-43 185
25 TraesCS6A01G143200 chr3A 93.548 124 5 3 1808 1929 674679566 674679444 8.530000e-42 182
26 TraesCS6A01G143200 chr7D 96.429 112 4 0 1823 1934 623644443 623644554 6.590000e-43 185
27 TraesCS6A01G143200 chr4A 96.429 112 2 2 1817 1926 557549785 557549896 2.370000e-42 183
28 TraesCS6A01G143200 chr2D 94.872 117 6 0 1816 1932 516440239 516440355 2.370000e-42 183
29 TraesCS6A01G143200 chr7A 94.167 120 6 1 1808 1926 98025713 98025832 8.530000e-42 182
30 TraesCS6A01G143200 chr5A 90.071 141 10 4 1800 1936 601257442 601257302 3.070000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G143200 chr6A 119618319 119622182 3863 True 7136.000000 7136 100.000000 1 3864 1 chr6A.!!$R1 3863
1 TraesCS6A01G143200 chr6A 119637656 119640393 2737 True 373.666667 544 83.390333 2 1062 3 chr6A.!!$R3 1060
2 TraesCS6A01G143200 chr6D 99666293 99673190 6897 True 1013.200000 1221 88.199000 2 3864 5 chr6D.!!$R1 3862
3 TraesCS6A01G143200 chr6B 183752761 183754602 1841 True 757.500000 1027 91.411500 2019 3562 2 chr6B.!!$R3 1543
4 TraesCS6A01G143200 chr6B 183761555 183762800 1245 True 562.333333 1164 90.802333 620 2032 3 chr6B.!!$R4 1412

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 4983 3.910767 CAGCGATGTTTCTGAAAAAGAGC 59.089 43.478 4.09 9.14 35.91 4.09 F
1218 6046 1.142748 CGTGAAGGCCCTAGAGCTG 59.857 63.158 0.00 0.00 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 6625 0.031616 AGCCCCAACCTTTCACCAAA 60.032 50.0 0.00 0.0 0.0 3.28 R
2886 7759 0.107703 TTAGAGCGGTGATTGGCCTG 60.108 55.0 3.32 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 2883 6.114767 ACATGCACATGTAACTGACATATGA 58.885 36.000 14.42 0.00 44.42 2.15
83 2915 4.931661 AGAGAACAAAGACGTAACCAGA 57.068 40.909 0.00 0.00 0.00 3.86
106 2939 7.955864 CAGATTTTGTAAGCGAAAAGTACCTAC 59.044 37.037 0.00 0.00 32.27 3.18
188 3022 9.314321 AGTTCTTACATTGATTACGTCCTAATG 57.686 33.333 0.00 2.18 35.47 1.90
304 3138 9.665719 AGTCATGGTTTTCTAAAATGTTTTTGT 57.334 25.926 0.00 0.00 0.00 2.83
305 3139 9.701355 GTCATGGTTTTCTAAAATGTTTTTGTG 57.299 29.630 0.00 0.00 0.00 3.33
336 3170 7.814587 TGTTGTAGATTCTGAACATACACTCAG 59.185 37.037 13.23 0.00 40.42 3.35
484 4983 3.910767 CAGCGATGTTTCTGAAAAAGAGC 59.089 43.478 4.09 9.14 35.91 4.09
620 5119 5.164606 GTTGGAAACTTTCGCACTCTTAA 57.835 39.130 0.00 0.00 45.32 1.85
627 5140 8.021396 GGAAACTTTCGCACTCTTAATTAACAT 58.979 33.333 0.00 0.00 0.00 2.71
631 5144 8.230486 ACTTTCGCACTCTTAATTAACATCAAG 58.770 33.333 0.00 0.00 0.00 3.02
748 5264 4.080526 AGCACCCGAATTACCTTACATTCT 60.081 41.667 0.00 0.00 0.00 2.40
846 5673 6.795590 TCCAAAAACAAGACCCCAATATCTA 58.204 36.000 0.00 0.00 0.00 1.98
948 5776 8.648557 AAAAGAGGTTGAAATTCAAAGCTAAC 57.351 30.769 10.27 0.00 38.22 2.34
1218 6046 1.142748 CGTGAAGGCCCTAGAGCTG 59.857 63.158 0.00 0.00 0.00 4.24
1268 6096 1.542187 GGAGACCAGGTACAAGCGGT 61.542 60.000 0.00 0.00 0.00 5.68
1345 6173 7.982354 CCATTAACCAAGTTTACACCTTCAAAA 59.018 33.333 0.00 0.00 0.00 2.44
1351 6179 6.821160 CCAAGTTTACACCTTCAAAACCAAAT 59.179 34.615 0.00 0.00 34.39 2.32
1353 6181 9.541143 CAAGTTTACACCTTCAAAACCAAATAT 57.459 29.630 0.00 0.00 34.39 1.28
1372 6200 7.254932 CCAAATATTGCTCTAGTTTACTGCTCC 60.255 40.741 0.00 0.00 0.00 4.70
1373 6201 4.826274 ATTGCTCTAGTTTACTGCTCCA 57.174 40.909 0.00 0.00 0.00 3.86
1386 6214 1.486310 CTGCTCCACTGCCCATACTTA 59.514 52.381 0.00 0.00 0.00 2.24
1398 6226 4.256920 GCCCATACTTAGCCATGATACAG 58.743 47.826 0.00 0.00 0.00 2.74
1449 6277 5.728471 AGATGATGGTATGCATAGTAGTGC 58.272 41.667 6.67 0.00 45.25 4.40
1459 6287 4.078639 GCATAGTAGTGCAGGGATTTCT 57.921 45.455 0.00 0.00 44.43 2.52
1460 6288 4.455606 GCATAGTAGTGCAGGGATTTCTT 58.544 43.478 0.00 0.00 44.43 2.52
1542 6387 6.994421 ATGTTCTTATGGTTTCCCTGTTTT 57.006 33.333 0.00 0.00 0.00 2.43
1577 6424 3.696051 TCTTATGGCTCAAGGTTGCAATC 59.304 43.478 0.59 0.23 0.00 2.67
1700 6547 1.420138 GGGTCTGGAAAGGTGAGACAA 59.580 52.381 0.00 0.00 38.30 3.18
1707 6554 6.039829 GTCTGGAAAGGTGAGACAAGAATTTT 59.960 38.462 0.00 0.00 36.83 1.82
1715 6562 8.926715 AGGTGAGACAAGAATTTTGTTAAAAC 57.073 30.769 7.23 0.00 32.37 2.43
1716 6563 8.749354 AGGTGAGACAAGAATTTTGTTAAAACT 58.251 29.630 7.23 1.65 32.37 2.66
1717 6564 9.020813 GGTGAGACAAGAATTTTGTTAAAACTC 57.979 33.333 7.23 8.59 32.37 3.01
1718 6565 9.788960 GTGAGACAAGAATTTTGTTAAAACTCT 57.211 29.630 7.23 0.00 32.37 3.24
1722 6569 9.689075 GACAAGAATTTTGTTAAAACTCTTTGC 57.311 29.630 7.70 1.67 31.92 3.68
1723 6570 9.213799 ACAAGAATTTTGTTAAAACTCTTTGCA 57.786 25.926 7.70 0.00 31.92 4.08
1725 6572 9.651913 AAGAATTTTGTTAAAACTCTTTGCAGA 57.348 25.926 5.27 0.00 30.96 4.26
1726 6573 9.651913 AGAATTTTGTTAAAACTCTTTGCAGAA 57.348 25.926 0.00 0.00 32.37 3.02
1733 6580 9.515020 TGTTAAAACTCTTTGCAGAAATAAGTG 57.485 29.630 0.00 0.00 0.00 3.16
1734 6581 9.730420 GTTAAAACTCTTTGCAGAAATAAGTGA 57.270 29.630 4.60 0.00 0.00 3.41
1735 6582 9.950680 TTAAAACTCTTTGCAGAAATAAGTGAG 57.049 29.630 4.60 0.00 0.00 3.51
1736 6583 5.619625 ACTCTTTGCAGAAATAAGTGAGC 57.380 39.130 4.60 0.00 0.00 4.26
1737 6584 5.065914 ACTCTTTGCAGAAATAAGTGAGCA 58.934 37.500 4.60 0.00 0.00 4.26
1747 6594 7.130917 CAGAAATAAGTGAGCACATCTTATGC 58.869 38.462 14.61 11.58 43.74 3.14
1765 6612 8.863872 TCTTATGCTGCTGATACTACACTATA 57.136 34.615 0.00 0.00 0.00 1.31
1789 6636 7.967890 ATTATTTGAGCTTTTTGGTGAAAGG 57.032 32.000 0.00 0.00 37.17 3.11
1801 6648 1.534729 GTGAAAGGTTGGGGCTACAG 58.465 55.000 0.00 0.00 0.00 2.74
1831 6678 8.468399 ACTAGAGTTTTCTATTTTACTCCCTCG 58.532 37.037 0.00 0.00 38.17 4.63
1832 6679 6.641474 AGAGTTTTCTATTTTACTCCCTCGG 58.359 40.000 0.00 0.00 38.17 4.63
1833 6680 6.212993 AGAGTTTTCTATTTTACTCCCTCGGT 59.787 38.462 0.00 0.00 38.17 4.69
1834 6681 6.776744 AGTTTTCTATTTTACTCCCTCGGTT 58.223 36.000 0.00 0.00 0.00 4.44
1835 6682 6.877855 AGTTTTCTATTTTACTCCCTCGGTTC 59.122 38.462 0.00 0.00 0.00 3.62
1836 6683 5.349061 TTCTATTTTACTCCCTCGGTTCC 57.651 43.478 0.00 0.00 0.00 3.62
1837 6684 4.355549 TCTATTTTACTCCCTCGGTTCCA 58.644 43.478 0.00 0.00 0.00 3.53
1838 6685 4.778958 TCTATTTTACTCCCTCGGTTCCAA 59.221 41.667 0.00 0.00 0.00 3.53
1839 6686 3.860968 TTTTACTCCCTCGGTTCCAAA 57.139 42.857 0.00 0.00 0.00 3.28
1840 6687 4.376225 TTTTACTCCCTCGGTTCCAAAT 57.624 40.909 0.00 0.00 0.00 2.32
1841 6688 4.376225 TTTACTCCCTCGGTTCCAAATT 57.624 40.909 0.00 0.00 0.00 1.82
1842 6689 5.502089 TTTACTCCCTCGGTTCCAAATTA 57.498 39.130 0.00 0.00 0.00 1.40
1843 6690 3.345508 ACTCCCTCGGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1844 6691 2.910977 ACTCCCTCGGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1845 6692 3.055312 ACTCCCTCGGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1846 6693 2.907696 TCCCTCGGTTCCAAATTACTCA 59.092 45.455 0.00 0.00 0.00 3.41
1847 6694 3.521937 TCCCTCGGTTCCAAATTACTCAT 59.478 43.478 0.00 0.00 0.00 2.90
1848 6695 3.877508 CCCTCGGTTCCAAATTACTCATC 59.122 47.826 0.00 0.00 0.00 2.92
1849 6696 3.555956 CCTCGGTTCCAAATTACTCATCG 59.444 47.826 0.00 0.00 0.00 3.84
1850 6697 2.933906 TCGGTTCCAAATTACTCATCGC 59.066 45.455 0.00 0.00 0.00 4.58
1851 6698 2.675844 CGGTTCCAAATTACTCATCGCA 59.324 45.455 0.00 0.00 0.00 5.10
1852 6699 3.242413 CGGTTCCAAATTACTCATCGCAG 60.242 47.826 0.00 0.00 0.00 5.18
1853 6700 3.938963 GGTTCCAAATTACTCATCGCAGA 59.061 43.478 0.00 0.00 45.75 4.26
1854 6701 4.394920 GGTTCCAAATTACTCATCGCAGAA 59.605 41.667 0.00 0.00 43.58 3.02
1855 6702 5.106317 GGTTCCAAATTACTCATCGCAGAAA 60.106 40.000 0.00 0.00 43.58 2.52
1856 6703 6.404734 GGTTCCAAATTACTCATCGCAGAAAT 60.405 38.462 0.00 0.00 43.58 2.17
1857 6704 6.122850 TCCAAATTACTCATCGCAGAAATG 57.877 37.500 0.00 0.00 43.58 2.32
1858 6705 5.066375 TCCAAATTACTCATCGCAGAAATGG 59.934 40.000 0.00 0.00 43.58 3.16
1859 6706 5.066375 CCAAATTACTCATCGCAGAAATGGA 59.934 40.000 0.00 0.00 43.58 3.41
1860 6707 6.238842 CCAAATTACTCATCGCAGAAATGGAT 60.239 38.462 0.00 0.00 43.58 3.41
1861 6708 5.936686 ATTACTCATCGCAGAAATGGATG 57.063 39.130 0.00 0.00 43.58 3.51
1862 6709 3.272574 ACTCATCGCAGAAATGGATGT 57.727 42.857 0.80 0.00 43.58 3.06
1863 6710 4.406648 ACTCATCGCAGAAATGGATGTA 57.593 40.909 0.80 0.00 43.58 2.29
1864 6711 4.965814 ACTCATCGCAGAAATGGATGTAT 58.034 39.130 0.80 0.00 43.58 2.29
1865 6712 4.993584 ACTCATCGCAGAAATGGATGTATC 59.006 41.667 0.80 0.00 43.58 2.24
1866 6713 5.219343 TCATCGCAGAAATGGATGTATCT 57.781 39.130 0.80 0.00 43.58 1.98
1867 6714 6.015095 ACTCATCGCAGAAATGGATGTATCTA 60.015 38.462 0.80 0.00 43.58 1.98
1868 6715 6.393171 TCATCGCAGAAATGGATGTATCTAG 58.607 40.000 0.80 0.00 43.58 2.43
1869 6716 6.209391 TCATCGCAGAAATGGATGTATCTAGA 59.791 38.462 0.00 0.00 43.58 2.43
1870 6717 6.405278 TCGCAGAAATGGATGTATCTAGAA 57.595 37.500 0.00 0.00 0.00 2.10
1871 6718 6.216569 TCGCAGAAATGGATGTATCTAGAAC 58.783 40.000 0.00 0.00 0.00 3.01
1872 6719 6.040955 TCGCAGAAATGGATGTATCTAGAACT 59.959 38.462 0.00 0.00 0.00 3.01
1873 6720 7.230712 TCGCAGAAATGGATGTATCTAGAACTA 59.769 37.037 0.00 0.00 0.00 2.24
1874 6721 7.867909 CGCAGAAATGGATGTATCTAGAACTAA 59.132 37.037 0.00 0.00 0.00 2.24
1875 6722 9.547753 GCAGAAATGGATGTATCTAGAACTAAA 57.452 33.333 0.00 0.00 0.00 1.85
1901 6748 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
1902 6749 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
1903 6750 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
1904 6751 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
1905 6752 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
1906 6753 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
1907 6754 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
1908 6755 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
1909 6756 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
1910 6757 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
1911 6758 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
1912 6759 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
1913 6760 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
1914 6761 3.245284 CCATACCTGCGACAAGTAATTCG 59.755 47.826 0.00 0.00 38.31 3.34
1915 6762 1.722011 ACCTGCGACAAGTAATTCGG 58.278 50.000 0.00 0.00 35.73 4.30
1916 6763 1.274167 ACCTGCGACAAGTAATTCGGA 59.726 47.619 0.00 0.00 35.73 4.55
1917 6764 2.289195 ACCTGCGACAAGTAATTCGGAA 60.289 45.455 0.00 0.00 35.02 4.30
1918 6765 2.093783 CCTGCGACAAGTAATTCGGAAC 59.906 50.000 0.00 0.00 35.02 3.62
2103 6950 1.339711 CGCTTGCTATTTTGTGGTGC 58.660 50.000 0.00 0.00 0.00 5.01
2127 6974 4.521130 AGTCATCGCAGACTAACTGAAA 57.479 40.909 7.67 0.00 46.52 2.69
2168 7015 5.833082 TGAATGCGCCTTAAAACAAGTTTA 58.167 33.333 4.18 0.00 31.63 2.01
2170 7017 6.584563 TGAATGCGCCTTAAAACAAGTTTATC 59.415 34.615 4.18 0.00 31.69 1.75
2171 7018 5.699097 TGCGCCTTAAAACAAGTTTATCT 57.301 34.783 4.18 0.00 31.69 1.98
2192 7039 3.998913 TGTTATGGCTCTGGATGTTCA 57.001 42.857 0.00 0.00 0.00 3.18
2195 7042 4.263462 TGTTATGGCTCTGGATGTTCACTT 60.263 41.667 0.00 0.00 0.00 3.16
2196 7043 5.045942 TGTTATGGCTCTGGATGTTCACTTA 60.046 40.000 0.00 0.00 0.00 2.24
2197 7044 4.574674 ATGGCTCTGGATGTTCACTTAA 57.425 40.909 0.00 0.00 0.00 1.85
2199 7046 4.922206 TGGCTCTGGATGTTCACTTAAAT 58.078 39.130 0.00 0.00 0.00 1.40
2201 7048 5.415701 TGGCTCTGGATGTTCACTTAAATTC 59.584 40.000 0.00 0.00 0.00 2.17
2202 7049 5.163612 GGCTCTGGATGTTCACTTAAATTCC 60.164 44.000 0.00 0.00 0.00 3.01
2203 7050 5.447818 GCTCTGGATGTTCACTTAAATTCCG 60.448 44.000 0.00 0.00 0.00 4.30
2204 7051 5.800296 TCTGGATGTTCACTTAAATTCCGA 58.200 37.500 0.00 0.00 0.00 4.55
2205 7052 6.234920 TCTGGATGTTCACTTAAATTCCGAA 58.765 36.000 0.00 0.00 0.00 4.30
2206 7053 6.371548 TCTGGATGTTCACTTAAATTCCGAAG 59.628 38.462 0.00 0.00 0.00 3.79
2225 7078 5.180117 CCGAAGTAATCTTGCCATAATGAGG 59.820 44.000 0.00 0.00 33.64 3.86
2229 7082 5.760253 AGTAATCTTGCCATAATGAGGTTCG 59.240 40.000 0.00 0.00 0.00 3.95
2230 7083 2.288666 TCTTGCCATAATGAGGTTCGC 58.711 47.619 0.00 0.00 0.00 4.70
2231 7084 1.334869 CTTGCCATAATGAGGTTCGCC 59.665 52.381 0.00 0.00 37.60 5.54
2270 7123 9.995003 GATATCTTTCTTGTATCTGATGTTCCT 57.005 33.333 0.00 0.00 0.00 3.36
2284 7137 7.855375 TCTGATGTTCCTCTCAATACATTTCT 58.145 34.615 0.00 0.00 31.76 2.52
2285 7138 7.984050 TCTGATGTTCCTCTCAATACATTTCTC 59.016 37.037 0.00 0.00 31.76 2.87
2286 7139 7.050377 TGATGTTCCTCTCAATACATTTCTCC 58.950 38.462 0.00 0.00 31.76 3.71
2297 7150 7.930217 TCAATACATTTCTCCGGAATTTCATC 58.070 34.615 5.23 0.00 0.00 2.92
2301 7154 6.414732 ACATTTCTCCGGAATTTCATCTGTA 58.585 36.000 5.23 0.00 0.00 2.74
2304 7157 6.485830 TTCTCCGGAATTTCATCTGTAGAT 57.514 37.500 5.23 0.00 34.56 1.98
2309 7162 6.763135 TCCGGAATTTCATCTGTAGATTCTTG 59.237 38.462 0.00 0.00 31.21 3.02
2316 7169 5.423015 TCATCTGTAGATTCTTGTTCAGGC 58.577 41.667 0.00 0.00 31.21 4.85
2345 7198 7.350744 AGTCTTGCCATAATTTAATGCATGA 57.649 32.000 0.00 11.66 0.00 3.07
2414 7267 2.280592 GGTGGTCTTCGCCGTGTT 60.281 61.111 0.00 0.00 36.17 3.32
2531 7384 9.762933 TCATCTGTTATATCATTTCGTTCATGA 57.237 29.630 0.00 0.00 35.12 3.07
2567 7420 2.170607 TCCACCATAAGCAACTCCTAGC 59.829 50.000 0.00 0.00 0.00 3.42
2596 7449 2.441410 TGTTCCTTTCTGTTGCACACA 58.559 42.857 0.00 0.00 0.00 3.72
2597 7450 2.163412 TGTTCCTTTCTGTTGCACACAC 59.837 45.455 0.00 0.00 0.00 3.82
2609 7462 0.883153 GCACACACCATGCATTCAGA 59.117 50.000 0.00 0.00 42.88 3.27
2618 7471 4.637091 CACCATGCATTCAGAGATGTGTTA 59.363 41.667 0.00 0.00 0.00 2.41
2619 7472 4.880120 ACCATGCATTCAGAGATGTGTTAG 59.120 41.667 0.00 0.00 0.00 2.34
2647 7515 7.643569 TTTAACAACTCATGCATATGGATGT 57.356 32.000 29.43 14.29 43.25 3.06
2671 7540 8.802267 TGTTTAGAATAAGAAAATCCCCACTTG 58.198 33.333 0.00 0.00 0.00 3.16
2672 7541 9.020731 GTTTAGAATAAGAAAATCCCCACTTGA 57.979 33.333 0.00 0.00 0.00 3.02
2673 7542 8.807948 TTAGAATAAGAAAATCCCCACTTGAG 57.192 34.615 0.00 0.00 0.00 3.02
2674 7543 6.794534 AGAATAAGAAAATCCCCACTTGAGT 58.205 36.000 0.00 0.00 0.00 3.41
2675 7544 6.887002 AGAATAAGAAAATCCCCACTTGAGTC 59.113 38.462 0.00 0.00 0.00 3.36
2676 7545 4.731313 AAGAAAATCCCCACTTGAGTCT 57.269 40.909 0.00 0.00 0.00 3.24
2677 7546 4.731313 AGAAAATCCCCACTTGAGTCTT 57.269 40.909 0.00 0.00 0.00 3.01
2678 7547 4.401925 AGAAAATCCCCACTTGAGTCTTG 58.598 43.478 0.00 0.00 0.00 3.02
2679 7548 2.206576 AATCCCCACTTGAGTCTTGC 57.793 50.000 0.00 0.00 0.00 4.01
2680 7549 1.067295 ATCCCCACTTGAGTCTTGCA 58.933 50.000 0.00 0.00 0.00 4.08
2681 7550 1.067295 TCCCCACTTGAGTCTTGCAT 58.933 50.000 0.00 0.00 0.00 3.96
2687 7559 5.371526 CCCACTTGAGTCTTGCATATGTAT 58.628 41.667 4.29 0.00 0.00 2.29
2688 7560 5.824624 CCCACTTGAGTCTTGCATATGTATT 59.175 40.000 4.29 0.00 0.00 1.89
2699 7571 7.751732 TCTTGCATATGTATTTGACAAGACAC 58.248 34.615 12.74 0.00 42.78 3.67
2701 7573 5.064579 TGCATATGTATTTGACAAGACACCG 59.935 40.000 4.29 2.01 42.78 4.94
2703 7575 1.795872 TGTATTTGACAAGACACCGCG 59.204 47.619 0.00 0.00 34.15 6.46
2718 7590 2.311124 CCGCGGAGGTTCTAAATCTT 57.689 50.000 24.07 0.00 34.51 2.40
2722 7594 3.198872 GCGGAGGTTCTAAATCTTCCTG 58.801 50.000 0.00 0.00 0.00 3.86
2725 7597 4.631813 CGGAGGTTCTAAATCTTCCTGTTG 59.368 45.833 0.00 0.00 0.00 3.33
2806 7679 3.680156 GCAAATGGCGAGGGTTCA 58.320 55.556 0.00 0.00 0.00 3.18
2809 7682 0.243636 CAAATGGCGAGGGTTCAACC 59.756 55.000 0.00 0.00 37.60 3.77
2868 7741 1.813513 AGGCAGCACACATAACTGTC 58.186 50.000 0.00 0.00 36.28 3.51
2871 7744 1.531149 GCAGCACACATAACTGTCGTT 59.469 47.619 0.00 0.00 37.15 3.85
2881 7754 4.518970 ACATAACTGTCGTTCTTTGCCAAT 59.481 37.500 0.00 0.00 34.59 3.16
2886 7759 0.039256 TCGTTCTTTGCCAATGCTGC 60.039 50.000 0.00 0.00 38.71 5.25
2888 7761 1.425412 GTTCTTTGCCAATGCTGCAG 58.575 50.000 10.11 10.11 40.35 4.41
2901 7783 4.349503 TGCAGGCCAATCACCGCT 62.350 61.111 5.01 0.00 0.00 5.52
2904 7786 1.522092 CAGGCCAATCACCGCTCTA 59.478 57.895 5.01 0.00 0.00 2.43
2908 7790 1.334869 GGCCAATCACCGCTCTAATTG 59.665 52.381 0.00 0.00 0.00 2.32
2914 7796 5.297776 CCAATCACCGCTCTAATTGAAATCT 59.702 40.000 0.00 0.00 32.14 2.40
2918 7800 6.611381 TCACCGCTCTAATTGAAATCTTTTG 58.389 36.000 0.00 0.00 0.00 2.44
2920 7802 5.476945 ACCGCTCTAATTGAAATCTTTTGGT 59.523 36.000 0.00 0.00 0.00 3.67
2922 7804 6.967199 CCGCTCTAATTGAAATCTTTTGGTAC 59.033 38.462 0.00 0.00 0.00 3.34
2923 7805 6.967199 CGCTCTAATTGAAATCTTTTGGTACC 59.033 38.462 4.43 4.43 0.00 3.34
2925 7807 7.361799 GCTCTAATTGAAATCTTTTGGTACCGT 60.362 37.037 7.57 0.00 0.00 4.83
2932 7814 6.543100 TGAAATCTTTTGGTACCGTACACTTT 59.457 34.615 7.57 3.37 0.00 2.66
2936 7818 6.344500 TCTTTTGGTACCGTACACTTTTGTA 58.656 36.000 7.57 0.00 37.15 2.41
2944 7827 6.780706 ACCGTACACTTTTGTATCAAAGAG 57.219 37.500 0.25 0.00 40.40 2.85
2952 7835 7.655328 ACACTTTTGTATCAAAGAGACTCTGAG 59.345 37.037 5.55 2.45 32.60 3.35
2957 7840 6.418946 TGTATCAAAGAGACTCTGAGCTAGA 58.581 40.000 5.55 0.00 0.00 2.43
2958 7841 6.887002 TGTATCAAAGAGACTCTGAGCTAGAA 59.113 38.462 5.55 0.00 34.32 2.10
2959 7842 5.637006 TCAAAGAGACTCTGAGCTAGAAC 57.363 43.478 5.55 0.00 34.32 3.01
2960 7843 4.461081 TCAAAGAGACTCTGAGCTAGAACC 59.539 45.833 5.55 0.00 34.32 3.62
2963 7846 2.099098 GAGACTCTGAGCTAGAACCTGC 59.901 54.545 4.19 0.00 34.32 4.85
2975 7858 1.294659 GAACCTGCTCGTGCTTCTGG 61.295 60.000 11.19 9.76 40.48 3.86
2976 7859 2.044806 AACCTGCTCGTGCTTCTGGT 62.045 55.000 11.19 10.33 40.48 4.00
2988 7871 2.016096 GCTTCTGGTCAATCCCTCTGC 61.016 57.143 0.00 0.00 34.77 4.26
2994 7877 2.225091 TGGTCAATCCCTCTGCAAATGT 60.225 45.455 0.00 0.00 34.77 2.71
2998 7881 5.450965 GGTCAATCCCTCTGCAAATGTAATG 60.451 44.000 0.00 0.00 0.00 1.90
3000 7883 5.125900 TCAATCCCTCTGCAAATGTAATGTG 59.874 40.000 0.00 0.00 33.55 3.21
3001 7884 4.032960 TCCCTCTGCAAATGTAATGTGT 57.967 40.909 0.00 0.00 32.75 3.72
3002 7885 5.172687 TCCCTCTGCAAATGTAATGTGTA 57.827 39.130 0.00 0.00 32.75 2.90
3003 7886 5.185454 TCCCTCTGCAAATGTAATGTGTAG 58.815 41.667 0.00 0.00 44.63 2.74
3011 7894 7.862648 TGCAAATGTAATGTGTAGAAAACGTA 58.137 30.769 0.00 0.00 32.75 3.57
3012 7895 8.508062 TGCAAATGTAATGTGTAGAAAACGTAT 58.492 29.630 0.00 0.00 32.75 3.06
3013 7896 9.337091 GCAAATGTAATGTGTAGAAAACGTATT 57.663 29.630 0.00 0.00 32.75 1.89
3015 7898 8.889849 AATGTAATGTGTAGAAAACGTATTGC 57.110 30.769 0.00 0.00 0.00 3.56
3017 8059 7.735500 TGTAATGTGTAGAAAACGTATTGCTC 58.264 34.615 0.00 0.00 0.00 4.26
3028 8070 4.083581 ACGTATTGCTCATTTTCTGCAC 57.916 40.909 0.00 0.00 36.37 4.57
3031 8073 4.556135 CGTATTGCTCATTTTCTGCACTTG 59.444 41.667 0.00 0.00 36.37 3.16
3032 8074 2.427232 TGCTCATTTTCTGCACTTGC 57.573 45.000 0.00 0.00 42.50 4.01
3049 8091 3.374220 TTGCTGAGCAAACCTGAATTG 57.626 42.857 18.76 0.00 45.96 2.32
3069 8111 5.933187 TTGTACAGATACAAATTGTGCGT 57.067 34.783 9.15 3.23 46.12 5.24
3071 8113 7.603963 TTGTACAGATACAAATTGTGCGTAT 57.396 32.000 9.15 0.00 46.12 3.06
3072 8114 8.705048 TTGTACAGATACAAATTGTGCGTATA 57.295 30.769 9.15 1.09 46.12 1.47
3073 8115 8.880878 TGTACAGATACAAATTGTGCGTATAT 57.119 30.769 9.15 0.00 38.40 0.86
3074 8116 9.968870 TGTACAGATACAAATTGTGCGTATATA 57.031 29.630 9.15 0.00 38.40 0.86
3108 8158 6.605471 AAGTGGTACATAGTGATCAAGTGA 57.395 37.500 0.00 0.00 44.52 3.41
3137 8187 5.873179 TTGCTTTGAACCCTTAGTAATCG 57.127 39.130 0.00 0.00 0.00 3.34
3141 8191 7.107542 TGCTTTGAACCCTTAGTAATCGTATT 58.892 34.615 0.00 0.00 0.00 1.89
3147 8197 8.707449 TGAACCCTTAGTAATCGTATTTGGTAT 58.293 33.333 0.00 0.00 0.00 2.73
3148 8198 9.551734 GAACCCTTAGTAATCGTATTTGGTATT 57.448 33.333 0.00 0.00 0.00 1.89
3150 8200 9.910267 ACCCTTAGTAATCGTATTTGGTATTTT 57.090 29.630 0.00 0.00 0.00 1.82
3185 8237 6.083098 TCTCTATTCTTAGCTCACATCAGC 57.917 41.667 0.00 0.00 39.99 4.26
3196 8248 3.685272 GCTCACATCAGCATCTCATATGG 59.315 47.826 2.13 0.00 39.43 2.74
3210 8262 4.474651 TCTCATATGGGTTGGTCAACAGAT 59.525 41.667 14.69 8.51 42.85 2.90
3211 8263 4.525996 TCATATGGGTTGGTCAACAGATG 58.474 43.478 14.69 8.70 42.85 2.90
3215 8267 1.247567 GGTTGGTCAACAGATGGGTG 58.752 55.000 14.69 0.00 42.85 4.61
3226 8278 0.482446 AGATGGGTGGTTGCCTTTGA 59.518 50.000 0.00 0.00 0.00 2.69
3240 8292 6.393171 GTTGCCTTTGAAGAGCAGAATATTT 58.607 36.000 0.00 0.00 35.00 1.40
3241 8293 5.957798 TGCCTTTGAAGAGCAGAATATTTG 58.042 37.500 0.00 0.00 31.61 2.32
3242 8294 5.477984 TGCCTTTGAAGAGCAGAATATTTGT 59.522 36.000 0.00 0.00 31.61 2.83
3245 8297 7.859875 GCCTTTGAAGAGCAGAATATTTGTATC 59.140 37.037 0.00 0.00 0.00 2.24
3246 8298 8.896744 CCTTTGAAGAGCAGAATATTTGTATCA 58.103 33.333 0.00 0.00 0.00 2.15
3247 8299 9.932699 CTTTGAAGAGCAGAATATTTGTATCAG 57.067 33.333 0.00 0.00 0.00 2.90
3248 8300 9.671279 TTTGAAGAGCAGAATATTTGTATCAGA 57.329 29.630 0.00 0.00 0.00 3.27
3276 8434 4.660303 TCTGATGATACACCCTTGGCTATT 59.340 41.667 0.00 0.00 0.00 1.73
3287 8445 5.769662 CACCCTTGGCTATTGATAATTAGCA 59.230 40.000 0.00 0.00 37.30 3.49
3297 8455 8.286097 GCTATTGATAATTAGCAAGTGTCCTTC 58.714 37.037 19.81 2.22 34.84 3.46
3578 8738 4.733405 CCGCTAAAAACAACAACTCTGAAC 59.267 41.667 0.00 0.00 0.00 3.18
3586 8746 3.312421 ACAACAACTCTGAACCATGTTCG 59.688 43.478 2.84 0.00 32.25 3.95
3594 8754 3.007940 TCTGAACCATGTTCGTCTTGGAT 59.992 43.478 16.81 8.95 41.99 3.41
3615 8775 4.383850 TTGAAACTGTTGAACATGTGGG 57.616 40.909 0.00 0.00 0.00 4.61
3621 8781 3.885297 ACTGTTGAACATGTGGGAAGAAG 59.115 43.478 0.00 0.00 0.00 2.85
3624 8784 0.804989 GAACATGTGGGAAGAAGCCG 59.195 55.000 0.00 0.00 0.00 5.52
3632 8792 0.831307 GGGAAGAAGCCGTATGGACT 59.169 55.000 4.73 0.00 37.49 3.85
3654 8814 4.879197 TCACTGAGATCTGCTCTTTTGA 57.121 40.909 0.00 0.00 44.27 2.69
3669 8836 6.375455 TGCTCTTTTGAAATTGGTATCCTCTC 59.625 38.462 0.00 0.00 0.00 3.20
3674 8841 2.918712 AATTGGTATCCTCTCCTGCG 57.081 50.000 0.00 0.00 0.00 5.18
3678 8845 1.284408 GTATCCTCTCCTGCGAGCG 59.716 63.158 0.00 0.00 35.94 5.03
3679 8846 1.152943 TATCCTCTCCTGCGAGCGT 60.153 57.895 0.00 0.00 35.94 5.07
3680 8847 0.108019 TATCCTCTCCTGCGAGCGTA 59.892 55.000 0.00 0.00 35.94 4.42
3681 8848 1.448922 ATCCTCTCCTGCGAGCGTAC 61.449 60.000 0.00 0.00 35.94 3.67
3683 8850 3.456431 CTCTCCTGCGAGCGTACCG 62.456 68.421 0.00 0.00 35.94 4.02
3703 8874 2.911723 CGCTGTTTCTTCTGACTAGTCG 59.088 50.000 17.85 12.43 0.00 4.18
3723 8894 6.522054 AGTCGTTATTTGACTTTGGAGAAGA 58.478 36.000 0.00 0.00 44.00 2.87
3724 8895 7.162082 AGTCGTTATTTGACTTTGGAGAAGAT 58.838 34.615 0.00 0.00 44.00 2.40
3777 8948 6.544928 TGCAAAACTACCATCAGATCTAGA 57.455 37.500 0.00 0.00 0.00 2.43
3778 8949 6.341316 TGCAAAACTACCATCAGATCTAGAC 58.659 40.000 0.00 0.00 0.00 2.59
3779 8950 6.070824 TGCAAAACTACCATCAGATCTAGACA 60.071 38.462 0.00 0.00 0.00 3.41
3780 8951 6.989169 GCAAAACTACCATCAGATCTAGACAT 59.011 38.462 0.00 0.00 0.00 3.06
3781 8952 7.170658 GCAAAACTACCATCAGATCTAGACATC 59.829 40.741 0.00 0.00 0.00 3.06
3782 8953 8.420222 CAAAACTACCATCAGATCTAGACATCT 58.580 37.037 0.00 0.00 33.00 2.90
3783 8954 9.647918 AAAACTACCATCAGATCTAGACATCTA 57.352 33.333 0.00 0.00 31.47 1.98
3784 8955 8.862325 AACTACCATCAGATCTAGACATCTAG 57.138 38.462 9.32 9.32 45.57 2.43
3814 8985 2.101917 TGGTACTTGCTAGAATACCGGC 59.898 50.000 0.00 0.00 40.06 6.13
3816 8987 2.604046 ACTTGCTAGAATACCGGCTG 57.396 50.000 0.00 0.00 0.00 4.85
3833 9004 3.275088 GCAAGCTGCAGCATGACT 58.725 55.556 39.70 19.15 44.26 3.41
3845 9016 4.970621 ATGACTGCATGATGCCGT 57.029 50.000 14.30 14.30 43.44 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 2883 6.127730 ACGTCTTTGTTCTCTTTGTTTGGAAT 60.128 34.615 0.00 0.00 0.00 3.01
83 2915 7.733402 TGTAGGTACTTTTCGCTTACAAAAT 57.267 32.000 0.00 0.00 41.75 1.82
235 3069 3.034635 AGCACAATTGTTGGGGTTAACA 58.965 40.909 8.77 0.00 43.28 2.41
296 3130 8.465999 AGAATCTACAACATCAACACAAAAACA 58.534 29.630 0.00 0.00 0.00 2.83
302 3136 6.765512 TGTTCAGAATCTACAACATCAACACA 59.234 34.615 3.57 0.00 0.00 3.72
303 3137 7.189693 TGTTCAGAATCTACAACATCAACAC 57.810 36.000 3.57 0.00 0.00 3.32
304 3138 7.984422 ATGTTCAGAATCTACAACATCAACA 57.016 32.000 11.79 0.00 35.02 3.33
305 3139 8.935844 TGTATGTTCAGAATCTACAACATCAAC 58.064 33.333 17.88 13.79 39.58 3.18
336 3170 5.953183 TGGTCATGAAAACTATGTGAATGC 58.047 37.500 0.00 0.00 0.00 3.56
500 4999 9.841295 ACGTTAGTATATGGGTATGTTTCAAAT 57.159 29.630 0.00 0.00 0.00 2.32
631 5144 9.922305 GAAGCATAGTGTAATCAATGTAAGAAC 57.078 33.333 0.00 0.00 0.00 3.01
748 5264 9.091220 TGCATTATTTATGGATGGATGAATGAA 57.909 29.630 0.00 0.00 34.66 2.57
816 5642 2.946990 GGGTCTTGTTTTTGGAGTTCGA 59.053 45.455 0.00 0.00 0.00 3.71
833 5660 5.514500 TTATGCCCTTAGATATTGGGGTC 57.486 43.478 0.00 0.00 41.19 4.46
846 5673 6.610075 AACAACTGATGAAATTATGCCCTT 57.390 33.333 0.00 0.00 0.00 3.95
948 5776 6.037500 CCTCTTTCTTTTTCTTTGCTTTTGGG 59.962 38.462 0.00 0.00 0.00 4.12
1268 6096 1.134753 CACAAACTGTGCAGAAAGGCA 59.865 47.619 6.17 0.00 41.89 4.75
1345 6173 7.112779 AGCAGTAAACTAGAGCAATATTTGGT 58.887 34.615 0.00 0.00 45.34 3.67
1351 6179 5.422331 AGTGGAGCAGTAAACTAGAGCAATA 59.578 40.000 0.00 0.00 0.00 1.90
1353 6181 3.578716 AGTGGAGCAGTAAACTAGAGCAA 59.421 43.478 0.00 0.00 0.00 3.91
1372 6200 2.158769 TCATGGCTAAGTATGGGCAGTG 60.159 50.000 0.00 0.00 45.61 3.66
1373 6201 2.126882 TCATGGCTAAGTATGGGCAGT 58.873 47.619 0.00 0.00 45.61 4.40
1386 6214 5.221601 CCATAGTCTTGTCTGTATCATGGCT 60.222 44.000 0.00 0.00 0.00 4.75
1438 6266 4.078639 AGAAATCCCTGCACTACTATGC 57.921 45.455 0.00 0.00 46.32 3.14
1439 6267 7.047891 TGTTAAGAAATCCCTGCACTACTATG 58.952 38.462 0.00 0.00 0.00 2.23
1440 6268 7.195374 TGTTAAGAAATCCCTGCACTACTAT 57.805 36.000 0.00 0.00 0.00 2.12
1441 6269 6.614694 TGTTAAGAAATCCCTGCACTACTA 57.385 37.500 0.00 0.00 0.00 1.82
1442 6270 5.499004 TGTTAAGAAATCCCTGCACTACT 57.501 39.130 0.00 0.00 0.00 2.57
1443 6271 5.880332 TGATGTTAAGAAATCCCTGCACTAC 59.120 40.000 0.00 0.00 0.00 2.73
1444 6272 6.061022 TGATGTTAAGAAATCCCTGCACTA 57.939 37.500 0.00 0.00 0.00 2.74
1445 6273 4.922206 TGATGTTAAGAAATCCCTGCACT 58.078 39.130 0.00 0.00 0.00 4.40
1446 6274 5.841957 ATGATGTTAAGAAATCCCTGCAC 57.158 39.130 0.00 0.00 0.00 4.57
1447 6275 6.189859 AGAATGATGTTAAGAAATCCCTGCA 58.810 36.000 0.00 0.00 0.00 4.41
1448 6276 6.705863 AGAATGATGTTAAGAAATCCCTGC 57.294 37.500 0.00 0.00 0.00 4.85
1449 6277 8.970859 ACTAGAATGATGTTAAGAAATCCCTG 57.029 34.615 0.00 0.00 0.00 4.45
1481 6309 8.815912 ACTAAAAATTAACATCATTCCAGCCTT 58.184 29.630 0.00 0.00 0.00 4.35
1542 6387 7.060383 TGAGCCATAAGAACATTTTTGGAAA 57.940 32.000 0.00 0.00 32.78 3.13
1544 6389 6.295236 CCTTGAGCCATAAGAACATTTTTGGA 60.295 38.462 0.00 0.00 32.78 3.53
1545 6390 5.870978 CCTTGAGCCATAAGAACATTTTTGG 59.129 40.000 0.00 0.00 33.77 3.28
1577 6424 1.202698 GCCAGCCTTCCATAGTAGTGG 60.203 57.143 0.00 0.00 40.76 4.00
1589 6436 4.648626 TGCTTCGCAGCCAGCCTT 62.649 61.111 4.17 0.00 46.74 4.35
1610 6457 2.383527 GGTTGAGTCGAAGCGCCAG 61.384 63.158 2.29 0.00 0.00 4.85
1700 6547 9.651913 TTCTGCAAAGAGTTTTAACAAAATTCT 57.348 25.926 4.20 4.20 45.67 2.40
1707 6554 9.515020 CACTTATTTCTGCAAAGAGTTTTAACA 57.485 29.630 2.16 0.00 0.00 2.41
1715 6562 5.049198 TGTGCTCACTTATTTCTGCAAAGAG 60.049 40.000 2.16 0.00 32.10 2.85
1716 6563 4.821260 TGTGCTCACTTATTTCTGCAAAGA 59.179 37.500 2.16 0.00 32.10 2.52
1717 6564 5.112220 TGTGCTCACTTATTTCTGCAAAG 57.888 39.130 1.47 0.00 32.10 2.77
1718 6565 5.474532 AGATGTGCTCACTTATTTCTGCAAA 59.525 36.000 1.47 0.00 32.10 3.68
1720 6567 4.582869 AGATGTGCTCACTTATTTCTGCA 58.417 39.130 1.47 0.00 0.00 4.41
1721 6568 5.557891 AAGATGTGCTCACTTATTTCTGC 57.442 39.130 1.47 0.00 0.00 4.26
1722 6569 7.130917 GCATAAGATGTGCTCACTTATTTCTG 58.869 38.462 15.05 10.21 39.45 3.02
1723 6570 7.256756 GCATAAGATGTGCTCACTTATTTCT 57.743 36.000 15.05 2.57 39.45 2.52
1735 6582 4.063689 AGTATCAGCAGCATAAGATGTGC 58.936 43.478 0.00 6.13 42.81 4.57
1736 6583 6.145209 GTGTAGTATCAGCAGCATAAGATGTG 59.855 42.308 0.00 0.00 32.61 3.21
1737 6584 6.041409 AGTGTAGTATCAGCAGCATAAGATGT 59.959 38.462 0.00 0.00 32.61 3.06
1765 6612 7.508687 ACCTTTCACCAAAAAGCTCAAATAAT 58.491 30.769 0.00 0.00 35.37 1.28
1775 6622 2.744823 GCCCCAACCTTTCACCAAAAAG 60.745 50.000 0.00 0.00 36.26 2.27
1778 6625 0.031616 AGCCCCAACCTTTCACCAAA 60.032 50.000 0.00 0.00 0.00 3.28
1788 6635 0.546598 AGTATGCTGTAGCCCCAACC 59.453 55.000 0.80 0.00 41.18 3.77
1789 6636 2.698797 TCTAGTATGCTGTAGCCCCAAC 59.301 50.000 0.80 0.00 41.18 3.77
1822 6669 4.098894 AGTAATTTGGAACCGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
1823 6670 2.910977 AGTAATTTGGAACCGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
1824 6671 3.055385 TGAGTAATTTGGAACCGAGGGAG 60.055 47.826 0.00 0.00 0.00 4.30
1825 6672 2.907696 TGAGTAATTTGGAACCGAGGGA 59.092 45.455 0.00 0.00 0.00 4.20
1826 6673 3.343941 TGAGTAATTTGGAACCGAGGG 57.656 47.619 0.00 0.00 0.00 4.30
1827 6674 3.555956 CGATGAGTAATTTGGAACCGAGG 59.444 47.826 0.00 0.00 0.00 4.63
1828 6675 3.001330 GCGATGAGTAATTTGGAACCGAG 59.999 47.826 0.00 0.00 0.00 4.63
1829 6676 2.933906 GCGATGAGTAATTTGGAACCGA 59.066 45.455 0.00 0.00 0.00 4.69
1830 6677 2.675844 TGCGATGAGTAATTTGGAACCG 59.324 45.455 0.00 0.00 0.00 4.44
1831 6678 3.938963 TCTGCGATGAGTAATTTGGAACC 59.061 43.478 0.00 0.00 0.00 3.62
1832 6679 5.545658 TTCTGCGATGAGTAATTTGGAAC 57.454 39.130 0.00 0.00 0.00 3.62
1833 6680 6.404623 CCATTTCTGCGATGAGTAATTTGGAA 60.405 38.462 0.00 0.00 0.00 3.53
1834 6681 5.066375 CCATTTCTGCGATGAGTAATTTGGA 59.934 40.000 0.00 0.00 0.00 3.53
1835 6682 5.066375 TCCATTTCTGCGATGAGTAATTTGG 59.934 40.000 0.00 0.00 0.00 3.28
1836 6683 6.122850 TCCATTTCTGCGATGAGTAATTTG 57.877 37.500 0.00 0.00 0.00 2.32
1837 6684 6.319658 ACATCCATTTCTGCGATGAGTAATTT 59.680 34.615 3.44 0.00 35.42 1.82
1838 6685 5.824624 ACATCCATTTCTGCGATGAGTAATT 59.175 36.000 3.44 0.00 35.42 1.40
1839 6686 5.371526 ACATCCATTTCTGCGATGAGTAAT 58.628 37.500 3.44 0.00 35.42 1.89
1840 6687 4.769688 ACATCCATTTCTGCGATGAGTAA 58.230 39.130 3.44 0.00 35.42 2.24
1841 6688 4.406648 ACATCCATTTCTGCGATGAGTA 57.593 40.909 3.44 0.00 35.42 2.59
1842 6689 3.272574 ACATCCATTTCTGCGATGAGT 57.727 42.857 3.44 0.00 35.42 3.41
1843 6690 5.236282 AGATACATCCATTTCTGCGATGAG 58.764 41.667 3.44 0.00 35.42 2.90
1844 6691 5.219343 AGATACATCCATTTCTGCGATGA 57.781 39.130 3.44 0.00 35.42 2.92
1845 6692 6.393171 TCTAGATACATCCATTTCTGCGATG 58.607 40.000 0.00 0.00 36.72 3.84
1846 6693 6.596309 TCTAGATACATCCATTTCTGCGAT 57.404 37.500 0.00 0.00 0.00 4.58
1847 6694 6.040955 AGTTCTAGATACATCCATTTCTGCGA 59.959 38.462 0.00 0.00 0.00 5.10
1848 6695 6.219473 AGTTCTAGATACATCCATTTCTGCG 58.781 40.000 0.00 0.00 0.00 5.18
1849 6696 9.547753 TTTAGTTCTAGATACATCCATTTCTGC 57.452 33.333 0.00 0.00 0.00 4.26
1875 6722 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
1876 6723 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
1877 6724 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
1878 6725 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
1879 6726 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
1880 6727 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
1881 6728 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
1882 6729 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
1883 6730 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
1884 6731 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
1885 6732 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
1886 6733 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
1887 6734 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
1888 6735 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
1889 6736 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
1890 6737 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
1891 6738 4.439057 GAATTACTTGTCGCAGGTATGGA 58.561 43.478 3.46 0.00 0.00 3.41
1892 6739 3.245284 CGAATTACTTGTCGCAGGTATGG 59.755 47.826 3.46 0.00 0.00 2.74
1893 6740 3.245284 CCGAATTACTTGTCGCAGGTATG 59.755 47.826 3.46 0.00 35.93 2.39
1894 6741 3.131577 TCCGAATTACTTGTCGCAGGTAT 59.868 43.478 3.46 0.00 35.93 2.73
1895 6742 2.492881 TCCGAATTACTTGTCGCAGGTA 59.507 45.455 0.00 0.00 35.93 3.08
1896 6743 1.274167 TCCGAATTACTTGTCGCAGGT 59.726 47.619 0.00 0.91 35.93 4.00
1897 6744 2.004583 TCCGAATTACTTGTCGCAGG 57.995 50.000 0.00 0.00 35.93 4.85
1898 6745 2.222508 CGTTCCGAATTACTTGTCGCAG 60.223 50.000 0.00 0.00 35.93 5.18
1899 6746 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
1900 6747 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
1901 6748 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
1902 6749 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1903 6750 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1904 6751 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1905 6752 2.093816 GTCCCTCCGTTCCGAATTACTT 60.094 50.000 0.00 0.00 0.00 2.24
1906 6753 1.479730 GTCCCTCCGTTCCGAATTACT 59.520 52.381 0.00 0.00 0.00 2.24
1907 6754 1.479730 AGTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
1908 6755 1.856629 AGTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
1909 6756 1.755380 CTAGTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
1910 6757 1.341778 ACTAGTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
1911 6758 0.038744 ACTAGTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
1912 6759 0.911769 TACTAGTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
1913 6760 1.307097 CTACTAGTCCCTCCGTTCCG 58.693 60.000 0.00 0.00 0.00 4.30
1914 6761 1.031235 GCTACTAGTCCCTCCGTTCC 58.969 60.000 0.00 0.00 0.00 3.62
1915 6762 2.055684 AGCTACTAGTCCCTCCGTTC 57.944 55.000 0.00 0.00 0.00 3.95
1916 6763 3.659183 TTAGCTACTAGTCCCTCCGTT 57.341 47.619 0.00 0.00 0.00 4.44
1917 6764 3.137913 TCATTAGCTACTAGTCCCTCCGT 59.862 47.826 0.00 0.00 0.00 4.69
1918 6765 3.752665 TCATTAGCTACTAGTCCCTCCG 58.247 50.000 0.00 0.00 0.00 4.63
1919 6766 3.508402 GCTCATTAGCTACTAGTCCCTCC 59.492 52.174 0.00 0.00 45.85 4.30
1920 6767 4.776795 GCTCATTAGCTACTAGTCCCTC 57.223 50.000 0.00 0.00 45.85 4.30
2000 6847 1.886886 TTTAACCACCGGAACTCTGC 58.113 50.000 9.46 0.00 0.00 4.26
2038 6885 3.817787 CACAGCAGTGCACAGTGT 58.182 55.556 21.04 15.62 39.21 3.55
2103 6950 5.175090 TCAGTTAGTCTGCGATGACTATG 57.825 43.478 15.36 12.55 45.46 2.23
2127 6974 5.619981 GCATTCAACCGTTCTGAAGCTAATT 60.620 40.000 0.00 0.00 36.30 1.40
2142 6989 3.019933 TGTTTTAAGGCGCATTCAACC 57.980 42.857 12.03 0.00 0.00 3.77
2168 7015 4.785346 ACATCCAGAGCCATAACAAGAT 57.215 40.909 0.00 0.00 0.00 2.40
2170 7017 4.095483 GTGAACATCCAGAGCCATAACAAG 59.905 45.833 0.00 0.00 0.00 3.16
2171 7018 4.009675 GTGAACATCCAGAGCCATAACAA 58.990 43.478 0.00 0.00 0.00 2.83
2178 7025 5.163612 GGAATTTAAGTGAACATCCAGAGCC 60.164 44.000 0.00 0.00 0.00 4.70
2180 7027 5.874810 TCGGAATTTAAGTGAACATCCAGAG 59.125 40.000 0.00 0.00 0.00 3.35
2192 7039 6.657541 TGGCAAGATTACTTCGGAATTTAAGT 59.342 34.615 0.00 6.90 39.25 2.24
2195 7042 8.740123 TTATGGCAAGATTACTTCGGAATTTA 57.260 30.769 0.00 0.00 33.70 1.40
2196 7043 7.639113 TTATGGCAAGATTACTTCGGAATTT 57.361 32.000 0.00 0.00 33.70 1.82
2197 7044 7.502226 TCATTATGGCAAGATTACTTCGGAATT 59.498 33.333 0.00 0.00 33.70 2.17
2199 7046 6.353323 TCATTATGGCAAGATTACTTCGGAA 58.647 36.000 0.00 0.00 33.70 4.30
2201 7048 5.180117 CCTCATTATGGCAAGATTACTTCGG 59.820 44.000 0.00 0.00 33.70 4.30
2202 7049 5.760253 ACCTCATTATGGCAAGATTACTTCG 59.240 40.000 0.00 0.00 33.70 3.79
2203 7050 7.519008 CGAACCTCATTATGGCAAGATTACTTC 60.519 40.741 0.00 0.00 33.70 3.01
2204 7051 6.260936 CGAACCTCATTATGGCAAGATTACTT 59.739 38.462 0.00 0.00 36.73 2.24
2205 7052 5.760253 CGAACCTCATTATGGCAAGATTACT 59.240 40.000 0.00 0.00 0.00 2.24
2206 7053 5.560953 GCGAACCTCATTATGGCAAGATTAC 60.561 44.000 0.00 0.00 0.00 1.89
2231 7084 9.736414 ACAAGAAAGATATCCATCCAGATTATG 57.264 33.333 0.00 0.00 0.00 1.90
2253 7106 8.200120 TGTATTGAGAGGAACATCAGATACAAG 58.800 37.037 0.00 0.00 32.66 3.16
2254 7107 8.078060 TGTATTGAGAGGAACATCAGATACAA 57.922 34.615 0.00 0.00 32.66 2.41
2270 7123 7.109501 TGAAATTCCGGAGAAATGTATTGAGA 58.890 34.615 3.34 0.00 35.09 3.27
2284 7137 6.485830 AGAATCTACAGATGAAATTCCGGA 57.514 37.500 0.00 0.00 34.49 5.14
2285 7138 6.540189 ACAAGAATCTACAGATGAAATTCCGG 59.460 38.462 0.00 0.00 34.49 5.14
2286 7139 7.545362 ACAAGAATCTACAGATGAAATTCCG 57.455 36.000 0.00 0.00 34.49 4.30
2297 7150 4.825422 TCAGCCTGAACAAGAATCTACAG 58.175 43.478 0.00 0.00 0.00 2.74
2301 7154 5.424895 AGACTATCAGCCTGAACAAGAATCT 59.575 40.000 0.00 0.00 0.00 2.40
2304 7157 5.240891 CAAGACTATCAGCCTGAACAAGAA 58.759 41.667 0.00 0.00 0.00 2.52
2309 7162 2.284190 GGCAAGACTATCAGCCTGAAC 58.716 52.381 0.00 0.00 43.70 3.18
2316 7169 8.570488 TGCATTAAATTATGGCAAGACTATCAG 58.430 33.333 0.00 0.00 0.00 2.90
2414 7267 0.888736 CCTGTGTTGGCGGAATGACA 60.889 55.000 0.00 0.00 0.00 3.58
2559 7412 3.244596 GGAACAAGTTGGAAGCTAGGAGT 60.245 47.826 7.96 0.00 0.00 3.85
2567 7420 5.343249 CAACAGAAAGGAACAAGTTGGAAG 58.657 41.667 7.96 0.00 34.35 3.46
2596 7449 3.361281 ACACATCTCTGAATGCATGGT 57.639 42.857 0.00 0.00 0.00 3.55
2597 7450 4.880120 ACTAACACATCTCTGAATGCATGG 59.120 41.667 0.00 0.00 0.00 3.66
2609 7462 8.500753 TGAGTTGTTAAAACACTAACACATCT 57.499 30.769 0.00 0.00 40.59 2.90
2618 7471 7.176515 TCCATATGCATGAGTTGTTAAAACACT 59.823 33.333 10.16 0.00 34.74 3.55
2619 7472 7.312154 TCCATATGCATGAGTTGTTAAAACAC 58.688 34.615 10.16 0.00 34.74 3.32
2647 7515 9.243105 CTCAAGTGGGGATTTTCTTATTCTAAA 57.757 33.333 0.00 0.00 0.00 1.85
2663 7532 2.787473 TATGCAAGACTCAAGTGGGG 57.213 50.000 0.00 0.00 0.00 4.96
2665 7534 6.932356 AATACATATGCAAGACTCAAGTGG 57.068 37.500 1.58 0.00 0.00 4.00
2671 7540 8.119226 GTCTTGTCAAATACATATGCAAGACTC 58.881 37.037 26.26 12.94 45.06 3.36
2672 7541 7.607607 TGTCTTGTCAAATACATATGCAAGACT 59.392 33.333 29.58 8.40 46.44 3.24
2673 7542 7.693951 GTGTCTTGTCAAATACATATGCAAGAC 59.306 37.037 26.54 26.54 46.46 3.01
2674 7543 7.148255 GGTGTCTTGTCAAATACATATGCAAGA 60.148 37.037 12.74 12.74 38.10 3.02
2675 7544 6.968904 GGTGTCTTGTCAAATACATATGCAAG 59.031 38.462 1.58 6.63 38.10 4.01
2676 7545 6.403092 CGGTGTCTTGTCAAATACATATGCAA 60.403 38.462 1.58 0.00 38.10 4.08
2677 7546 5.064579 CGGTGTCTTGTCAAATACATATGCA 59.935 40.000 1.58 0.00 38.10 3.96
2678 7547 5.501715 CGGTGTCTTGTCAAATACATATGC 58.498 41.667 1.58 0.00 38.10 3.14
2679 7548 5.501715 GCGGTGTCTTGTCAAATACATATG 58.498 41.667 0.00 0.00 38.10 1.78
2680 7549 4.270084 CGCGGTGTCTTGTCAAATACATAT 59.730 41.667 0.00 0.00 38.10 1.78
2681 7550 3.615056 CGCGGTGTCTTGTCAAATACATA 59.385 43.478 0.00 0.00 38.10 2.29
2687 7559 0.878523 CTCCGCGGTGTCTTGTCAAA 60.879 55.000 27.15 0.00 0.00 2.69
2688 7560 1.300620 CTCCGCGGTGTCTTGTCAA 60.301 57.895 27.15 0.00 0.00 3.18
2699 7571 2.202566 GAAGATTTAGAACCTCCGCGG 58.797 52.381 22.12 22.12 39.35 6.46
2701 7573 3.198872 CAGGAAGATTTAGAACCTCCGC 58.801 50.000 0.00 0.00 0.00 5.54
2703 7575 5.561679 ACAACAGGAAGATTTAGAACCTCC 58.438 41.667 0.00 0.00 0.00 4.30
2709 7581 7.522073 GCACATGAAACAACAGGAAGATTTAGA 60.522 37.037 0.00 0.00 0.00 2.10
2716 7588 3.067180 ACTGCACATGAAACAACAGGAAG 59.933 43.478 0.00 0.00 0.00 3.46
2718 7590 2.653726 ACTGCACATGAAACAACAGGA 58.346 42.857 0.00 0.00 0.00 3.86
2722 7594 5.101628 TCAAAGAACTGCACATGAAACAAC 58.898 37.500 0.00 0.00 0.00 3.32
2725 7597 4.614284 CGATCAAAGAACTGCACATGAAAC 59.386 41.667 0.00 0.00 0.00 2.78
2806 7679 3.756117 GAAGATGACAGTTCCAAGGGTT 58.244 45.455 0.00 0.00 0.00 4.11
2809 7682 2.996621 GTCGAAGATGACAGTTCCAAGG 59.003 50.000 0.00 0.00 40.67 3.61
2839 7712 1.747355 GTGTGCTGCCTTATGCTGATT 59.253 47.619 0.00 0.00 41.11 2.57
2857 7730 3.249799 TGGCAAAGAACGACAGTTATGTG 59.750 43.478 0.00 0.00 40.68 3.21
2862 7735 2.543653 GCATTGGCAAAGAACGACAGTT 60.544 45.455 3.01 0.00 41.04 3.16
2868 7741 0.318869 TGCAGCATTGGCAAAGAACG 60.319 50.000 3.01 0.00 44.61 3.95
2871 7744 1.969085 CCTGCAGCATTGGCAAAGA 59.031 52.632 8.66 0.00 44.61 2.52
2881 7754 2.677524 GGTGATTGGCCTGCAGCA 60.678 61.111 8.66 0.00 46.50 4.41
2886 7759 0.107703 TTAGAGCGGTGATTGGCCTG 60.108 55.000 3.32 0.00 0.00 4.85
2888 7761 1.334869 CAATTAGAGCGGTGATTGGCC 59.665 52.381 0.00 0.00 0.00 5.36
2890 7763 4.963276 TTTCAATTAGAGCGGTGATTGG 57.037 40.909 0.00 0.00 31.97 3.16
2892 7765 7.396540 AAAGATTTCAATTAGAGCGGTGATT 57.603 32.000 0.00 0.00 0.00 2.57
2901 7783 7.989416 ACGGTACCAAAAGATTTCAATTAGA 57.011 32.000 13.54 0.00 0.00 2.10
2904 7786 7.229907 AGTGTACGGTACCAAAAGATTTCAATT 59.770 33.333 13.54 0.00 0.00 2.32
2908 7790 6.549912 AAGTGTACGGTACCAAAAGATTTC 57.450 37.500 13.54 0.00 0.00 2.17
2914 7796 6.765036 TGATACAAAAGTGTACGGTACCAAAA 59.235 34.615 13.54 0.00 42.99 2.44
2918 7800 6.646240 TCTTTGATACAAAAGTGTACGGTACC 59.354 38.462 15.26 0.16 42.99 3.34
2920 7802 7.596248 GTCTCTTTGATACAAAAGTGTACGGTA 59.404 37.037 0.00 0.00 42.99 4.02
2922 7804 6.645415 AGTCTCTTTGATACAAAAGTGTACGG 59.355 38.462 0.00 0.00 42.99 4.02
2923 7805 7.595502 AGAGTCTCTTTGATACAAAAGTGTACG 59.404 37.037 0.00 0.00 42.99 3.67
2925 7807 8.638873 TCAGAGTCTCTTTGATACAAAAGTGTA 58.361 33.333 0.00 0.00 44.29 2.90
2932 7814 5.991933 AGCTCAGAGTCTCTTTGATACAA 57.008 39.130 0.00 0.00 0.00 2.41
2936 7818 5.127031 GGTTCTAGCTCAGAGTCTCTTTGAT 59.873 44.000 0.00 0.00 33.83 2.57
2944 7827 2.099405 AGCAGGTTCTAGCTCAGAGTC 58.901 52.381 0.00 0.00 36.00 3.36
2952 7835 0.390472 AAGCACGAGCAGGTTCTAGC 60.390 55.000 7.77 0.00 45.49 3.42
2957 7840 1.302033 CCAGAAGCACGAGCAGGTT 60.302 57.895 7.77 0.00 45.49 3.50
2958 7841 2.345244 CCAGAAGCACGAGCAGGT 59.655 61.111 7.77 0.00 45.49 4.00
2959 7842 1.739562 GACCAGAAGCACGAGCAGG 60.740 63.158 7.77 5.90 45.49 4.85
2960 7843 0.601046 TTGACCAGAAGCACGAGCAG 60.601 55.000 7.77 0.00 45.49 4.24
2963 7846 1.363744 GGATTGACCAGAAGCACGAG 58.636 55.000 0.00 0.00 38.79 4.18
2966 7849 1.280421 AGAGGGATTGACCAGAAGCAC 59.720 52.381 0.00 0.00 41.20 4.40
2975 7858 5.126061 ACATTACATTTGCAGAGGGATTGAC 59.874 40.000 3.36 0.00 0.00 3.18
2976 7859 5.125900 CACATTACATTTGCAGAGGGATTGA 59.874 40.000 3.36 0.00 0.00 2.57
2994 7877 7.892778 TGAGCAATACGTTTTCTACACATTA 57.107 32.000 0.00 0.00 0.00 1.90
2998 7881 8.146885 GAAAATGAGCAATACGTTTTCTACAC 57.853 34.615 14.16 0.00 43.70 2.90
3003 7886 5.629020 TGCAGAAAATGAGCAATACGTTTTC 59.371 36.000 13.80 13.80 45.57 2.29
3004 7887 5.402270 GTGCAGAAAATGAGCAATACGTTTT 59.598 36.000 0.00 0.00 40.35 2.43
3005 7888 4.917415 GTGCAGAAAATGAGCAATACGTTT 59.083 37.500 0.00 0.00 40.35 3.60
3006 7889 4.216257 AGTGCAGAAAATGAGCAATACGTT 59.784 37.500 0.00 0.00 40.35 3.99
3007 7890 3.753272 AGTGCAGAAAATGAGCAATACGT 59.247 39.130 0.00 0.00 40.35 3.57
3011 7894 3.006537 AGCAAGTGCAGAAAATGAGCAAT 59.993 39.130 6.00 0.00 45.16 3.56
3012 7895 2.363038 AGCAAGTGCAGAAAATGAGCAA 59.637 40.909 6.00 0.00 45.16 3.91
3013 7896 1.958579 AGCAAGTGCAGAAAATGAGCA 59.041 42.857 6.00 0.00 45.16 4.26
3014 7897 2.030540 TCAGCAAGTGCAGAAAATGAGC 60.031 45.455 6.00 0.00 45.16 4.26
3015 7898 3.822996 CTCAGCAAGTGCAGAAAATGAG 58.177 45.455 6.00 4.98 45.16 2.90
3017 8059 2.287970 TGCTCAGCAAGTGCAGAAAATG 60.288 45.455 0.00 0.00 41.43 2.32
3031 8073 3.253188 TGTACAATTCAGGTTTGCTCAGC 59.747 43.478 0.00 0.00 0.00 4.26
3032 8074 4.756642 TCTGTACAATTCAGGTTTGCTCAG 59.243 41.667 0.00 0.00 33.45 3.35
3040 8082 8.514594 CACAATTTGTATCTGTACAATTCAGGT 58.485 33.333 0.86 0.00 46.91 4.00
3044 8086 7.021196 ACGCACAATTTGTATCTGTACAATTC 58.979 34.615 0.86 0.00 46.91 2.17
3046 8088 6.494893 ACGCACAATTTGTATCTGTACAAT 57.505 33.333 0.86 0.00 46.91 2.71
3048 8090 8.880878 ATATACGCACAATTTGTATCTGTACA 57.119 30.769 0.86 0.00 39.00 2.90
3085 8134 6.605471 TCACTTGATCACTATGTACCACTT 57.395 37.500 0.00 0.00 0.00 3.16
3116 8166 4.901868 ACGATTACTAAGGGTTCAAAGCA 58.098 39.130 0.00 0.00 0.00 3.91
3121 8171 6.949715 ACCAAATACGATTACTAAGGGTTCA 58.050 36.000 0.00 0.00 0.00 3.18
3157 8207 6.214191 TGTGAGCTAAGAATAGAGAGGTTG 57.786 41.667 0.00 0.00 0.00 3.77
3158 8208 6.609212 TGATGTGAGCTAAGAATAGAGAGGTT 59.391 38.462 0.00 0.00 0.00 3.50
3159 8209 6.132658 TGATGTGAGCTAAGAATAGAGAGGT 58.867 40.000 0.00 0.00 0.00 3.85
3162 8212 5.595952 TGCTGATGTGAGCTAAGAATAGAGA 59.404 40.000 0.00 0.00 39.90 3.10
3167 8219 5.163332 TGAGATGCTGATGTGAGCTAAGAAT 60.163 40.000 0.00 0.00 39.90 2.40
3185 8237 4.525996 TGTTGACCAACCCATATGAGATG 58.474 43.478 3.65 0.00 40.46 2.90
3196 8248 1.247567 CACCCATCTGTTGACCAACC 58.752 55.000 10.04 0.00 40.46 3.77
3210 8262 0.260230 TCTTCAAAGGCAACCACCCA 59.740 50.000 0.00 0.00 37.17 4.51
3211 8263 0.961753 CTCTTCAAAGGCAACCACCC 59.038 55.000 0.00 0.00 37.17 4.61
3215 8267 1.609208 TCTGCTCTTCAAAGGCAACC 58.391 50.000 7.14 0.00 33.79 3.77
3226 8278 7.714377 CACCTCTGATACAAATATTCTGCTCTT 59.286 37.037 0.00 0.00 0.00 2.85
3287 8445 2.011122 TTCTCGGAGGAAGGACACTT 57.989 50.000 4.96 0.00 40.34 3.16
3297 8455 2.279517 CCCGCGAATTCTCGGAGG 60.280 66.667 32.79 16.69 46.30 4.30
3318 8476 8.213518 TGGCACTAAACAGAATCTTAATCATC 57.786 34.615 0.00 0.00 0.00 2.92
3475 8635 1.862602 AAACGAACATGGCTTCCCGC 61.863 55.000 0.00 0.00 38.13 6.13
3578 8738 4.216257 AGTTTCAATCCAAGACGAACATGG 59.784 41.667 0.00 0.00 38.55 3.66
3586 8746 5.890334 TGTTCAACAGTTTCAATCCAAGAC 58.110 37.500 0.00 0.00 0.00 3.01
3594 8754 4.019858 TCCCACATGTTCAACAGTTTCAA 58.980 39.130 0.00 0.00 0.00 2.69
3615 8775 2.930682 GTGAAGTCCATACGGCTTCTTC 59.069 50.000 11.47 6.84 41.85 2.87
3621 8781 1.476891 TCTCAGTGAAGTCCATACGGC 59.523 52.381 0.00 0.00 0.00 5.68
3624 8784 4.099266 AGCAGATCTCAGTGAAGTCCATAC 59.901 45.833 0.00 0.00 0.00 2.39
3632 8792 5.219343 TCAAAAGAGCAGATCTCAGTGAA 57.781 39.130 0.00 0.00 44.35 3.18
3654 8814 2.771943 TCGCAGGAGAGGATACCAATTT 59.228 45.455 0.00 0.00 37.17 1.82
3678 8845 3.027974 AGTCAGAAGAAACAGCGGTAC 57.972 47.619 0.00 0.00 0.00 3.34
3679 8846 3.825014 ACTAGTCAGAAGAAACAGCGGTA 59.175 43.478 0.00 0.00 0.00 4.02
3680 8847 2.628657 ACTAGTCAGAAGAAACAGCGGT 59.371 45.455 0.00 0.00 0.00 5.68
3681 8848 3.246619 GACTAGTCAGAAGAAACAGCGG 58.753 50.000 18.20 0.00 0.00 5.52
3683 8850 3.903360 ACGACTAGTCAGAAGAAACAGC 58.097 45.455 22.37 0.00 0.00 4.40
3693 8864 6.866770 TCCAAAGTCAAATAACGACTAGTCAG 59.133 38.462 22.37 16.39 42.90 3.51
3731 8902 6.925165 GCAATGAGATTCAGAAGGAAAACAAA 59.075 34.615 0.00 0.00 39.39 2.83
3732 8903 6.040729 TGCAATGAGATTCAGAAGGAAAACAA 59.959 34.615 0.00 0.00 39.39 2.83
3736 8907 6.653526 TTTGCAATGAGATTCAGAAGGAAA 57.346 33.333 0.00 0.00 39.39 3.13
3752 8923 7.497249 GTCTAGATCTGATGGTAGTTTTGCAAT 59.503 37.037 5.18 0.00 0.00 3.56
3777 8948 5.118729 AGTACCACAGAGCTACTAGATGT 57.881 43.478 0.00 0.00 0.00 3.06
3778 8949 5.734786 GCAAGTACCACAGAGCTACTAGATG 60.735 48.000 0.00 0.00 0.00 2.90
3779 8950 4.339814 GCAAGTACCACAGAGCTACTAGAT 59.660 45.833 0.00 0.00 0.00 1.98
3780 8951 3.695060 GCAAGTACCACAGAGCTACTAGA 59.305 47.826 0.00 0.00 0.00 2.43
3781 8952 3.697045 AGCAAGTACCACAGAGCTACTAG 59.303 47.826 0.00 0.00 0.00 2.57
3782 8953 3.698289 AGCAAGTACCACAGAGCTACTA 58.302 45.455 0.00 0.00 0.00 1.82
3783 8954 2.530701 AGCAAGTACCACAGAGCTACT 58.469 47.619 0.00 0.00 0.00 2.57
3784 8955 3.695060 TCTAGCAAGTACCACAGAGCTAC 59.305 47.826 0.00 0.00 33.83 3.58
3799 8970 0.539518 TGCAGCCGGTATTCTAGCAA 59.460 50.000 1.90 0.00 0.00 3.91
3816 8987 1.154016 CAGTCATGCTGCAGCTTGC 60.154 57.895 36.94 31.31 43.38 4.01
3834 9005 1.096967 TGTGATGGACGGCATCATGC 61.097 55.000 0.00 0.00 44.08 4.06
3835 9006 1.265905 CATGTGATGGACGGCATCATG 59.734 52.381 6.66 2.30 40.62 3.07
3836 9007 1.601166 CATGTGATGGACGGCATCAT 58.399 50.000 6.66 0.00 40.62 2.45
3837 9008 3.083686 CATGTGATGGACGGCATCA 57.916 52.632 0.00 0.00 36.79 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.