Multiple sequence alignment - TraesCS6A01G143100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G143100 chr6A 100.000 3528 0 0 2734 6261 119612039 119608512 0.000000e+00 6516.0
1 TraesCS6A01G143100 chr6A 100.000 2481 0 0 1 2481 119614772 119612292 0.000000e+00 4582.0
2 TraesCS6A01G143100 chr6A 88.644 634 58 9 1 621 150506861 150506229 0.000000e+00 760.0
3 TraesCS6A01G143100 chr6A 91.429 105 5 4 4693 4793 560694411 560694307 2.350000e-29 141.0
4 TraesCS6A01G143100 chr6D 90.104 1627 94 26 843 2458 99572591 99571021 0.000000e+00 2050.0
5 TraesCS6A01G143100 chr6D 96.821 1101 25 6 2734 3832 99570914 99569822 0.000000e+00 1831.0
6 TraesCS6A01G143100 chr6D 93.676 759 35 5 3958 4708 99569824 99569071 0.000000e+00 1123.0
7 TraesCS6A01G143100 chr6D 90.099 707 43 16 5106 5795 99568493 99567797 0.000000e+00 893.0
8 TraesCS6A01G143100 chr6D 91.133 406 19 11 5858 6261 99567430 99567040 9.240000e-148 534.0
9 TraesCS6A01G143100 chr6D 85.385 260 21 6 4793 5043 99569069 99568818 2.900000e-63 254.0
10 TraesCS6A01G143100 chr6D 93.258 89 6 0 625 713 99665790 99665702 1.420000e-26 132.0
11 TraesCS6A01G143100 chr6D 89.109 101 10 1 711 810 14223081 14223181 2.370000e-24 124.0
12 TraesCS6A01G143100 chr6B 96.909 1100 27 5 2734 3832 183718800 183717707 0.000000e+00 1836.0
13 TraesCS6A01G143100 chr6B 91.111 945 58 11 4793 5724 183716866 183715935 0.000000e+00 1256.0
14 TraesCS6A01G143100 chr6B 95.512 713 29 2 1747 2458 183720076 183719366 0.000000e+00 1136.0
15 TraesCS6A01G143100 chr6B 93.658 473 25 5 4240 4708 183717339 183716868 0.000000e+00 702.0
16 TraesCS6A01G143100 chr6B 82.820 844 72 32 875 1691 183720951 183720154 0.000000e+00 688.0
17 TraesCS6A01G143100 chr6B 85.423 638 76 9 1 621 40497667 40497030 0.000000e+00 647.0
18 TraesCS6A01G143100 chr6B 91.727 411 25 7 5852 6261 183714277 183713875 4.240000e-156 562.0
19 TraesCS6A01G143100 chr6B 94.326 282 8 4 3958 4231 183717709 183717428 5.800000e-115 425.0
20 TraesCS6A01G143100 chr6B 96.970 33 1 0 5777 5809 183714330 183714298 8.770000e-04 56.5
21 TraesCS6A01G143100 chr7B 91.561 628 46 4 1 622 586701300 586700674 0.000000e+00 859.0
22 TraesCS6A01G143100 chr7B 76.538 260 41 15 3547 3802 638487769 638488012 2.370000e-24 124.0
23 TraesCS6A01G143100 chr1D 90.694 634 43 9 2 621 475866356 475866987 0.000000e+00 830.0
24 TraesCS6A01G143100 chr1D 94.366 142 8 0 3820 3961 52606543 52606684 1.060000e-52 219.0
25 TraesCS6A01G143100 chr1B 89.028 638 50 11 1 621 525379022 525378388 0.000000e+00 773.0
26 TraesCS6A01G143100 chr1B 91.346 104 6 3 4694 4795 544492567 544492669 8.460000e-29 139.0
27 TraesCS6A01G143100 chr1B 90.526 95 9 0 711 805 513482621 513482715 6.590000e-25 126.0
28 TraesCS6A01G143100 chrUn 89.030 629 45 4 1 624 37814807 37815416 0.000000e+00 758.0
29 TraesCS6A01G143100 chr7A 87.289 653 58 19 1 635 229627987 229628632 0.000000e+00 723.0
30 TraesCS6A01G143100 chr7A 93.878 98 5 1 4696 4792 416496835 416496932 5.060000e-31 147.0
31 TraesCS6A01G143100 chr7A 75.940 266 43 16 3547 3809 666988647 666988894 3.970000e-22 117.0
32 TraesCS6A01G143100 chr7A 88.710 62 6 1 572 632 656730959 656731020 2.420000e-09 75.0
33 TraesCS6A01G143100 chr7A 82.558 86 11 4 557 640 49360284 49360201 8.710000e-09 73.1
34 TraesCS6A01G143100 chr2D 86.709 632 60 9 3 621 21305108 21305728 0.000000e+00 680.0
35 TraesCS6A01G143100 chr2D 96.947 131 4 0 3827 3957 622315654 622315784 2.940000e-53 220.0
36 TraesCS6A01G143100 chr3D 92.466 438 28 2 1 433 614673464 614673027 6.890000e-174 621.0
37 TraesCS6A01G143100 chr4A 92.342 222 14 3 1 222 734962721 734962503 4.710000e-81 313.0
38 TraesCS6A01G143100 chr4A 92.553 94 6 1 710 803 39531434 39531526 3.940000e-27 134.0
39 TraesCS6A01G143100 chr4A 93.258 89 6 0 712 800 621583780 621583692 1.420000e-26 132.0
40 TraesCS6A01G143100 chr3A 98.473 131 2 0 3830 3960 41372514 41372644 1.360000e-56 231.0
41 TraesCS6A01G143100 chr1A 95.652 138 5 1 3823 3959 481650966 481651103 2.940000e-53 220.0
42 TraesCS6A01G143100 chr1A 93.706 143 7 2 3829 3970 486045901 486045760 4.920000e-51 213.0
43 TraesCS6A01G143100 chr1A 91.398 93 8 0 708 800 561307035 561307127 1.830000e-25 128.0
44 TraesCS6A01G143100 chr3B 94.928 138 6 1 3828 3964 709011867 709011730 1.370000e-51 215.0
45 TraesCS6A01G143100 chr3B 92.105 152 9 3 3831 3981 62947239 62947388 1.770000e-50 211.0
46 TraesCS6A01G143100 chr7D 93.706 143 8 1 3831 3972 135442154 135442296 4.920000e-51 213.0
47 TraesCS6A01G143100 chr7D 95.745 94 3 1 4700 4792 86323384 86323477 3.910000e-32 150.0
48 TraesCS6A01G143100 chr7D 89.565 115 5 5 4688 4798 32004673 32004562 8.460000e-29 139.0
49 TraesCS6A01G143100 chr7D 92.683 82 6 0 3555 3636 576176127 576176208 1.100000e-22 119.0
50 TraesCS6A01G143100 chr5B 94.161 137 7 1 3830 3966 563340635 563340500 2.290000e-49 207.0
51 TraesCS6A01G143100 chr5B 92.857 98 7 0 4695 4792 544620352 544620255 6.540000e-30 143.0
52 TraesCS6A01G143100 chr5B 88.571 105 10 2 699 802 644608067 644607964 6.590000e-25 126.0
53 TraesCS6A01G143100 chr5D 96.774 93 3 0 4701 4793 420877346 420877438 8.400000e-34 156.0
54 TraesCS6A01G143100 chr5D 93.478 92 4 2 4703 4793 491871675 491871585 1.090000e-27 135.0
55 TraesCS6A01G143100 chr2B 92.593 108 5 3 4693 4798 383927940 383927834 1.090000e-32 152.0
56 TraesCS6A01G143100 chr2B 95.745 94 3 1 4700 4792 77856055 77856148 3.910000e-32 150.0
57 TraesCS6A01G143100 chr2B 95.699 93 3 1 4702 4793 544770214 544770306 1.410000e-31 148.0
58 TraesCS6A01G143100 chr2A 94.792 96 3 2 4701 4794 362443069 362443164 1.410000e-31 148.0
59 TraesCS6A01G143100 chr2A 93.182 88 6 0 711 798 717955012 717955099 5.090000e-26 130.0
60 TraesCS6A01G143100 chr2A 89.796 98 9 1 703 800 597850513 597850417 2.370000e-24 124.0
61 TraesCS6A01G143100 chr2A 87.879 66 7 1 557 621 391907601 391907536 6.730000e-10 76.8
62 TraesCS6A01G143100 chr4B 89.474 114 8 4 4681 4793 461690556 461690446 2.350000e-29 141.0
63 TraesCS6A01G143100 chr4B 93.478 92 5 1 4706 4796 631442200 631442109 1.090000e-27 135.0
64 TraesCS6A01G143100 chr4D 93.258 89 6 0 711 799 313923919 313923831 1.420000e-26 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G143100 chr6A 119608512 119614772 6260 True 5549.000000 6516 100.000000 1 6261 2 chr6A.!!$R3 6260
1 TraesCS6A01G143100 chr6A 150506229 150506861 632 True 760.000000 760 88.644000 1 621 1 chr6A.!!$R1 620
2 TraesCS6A01G143100 chr6D 99567040 99572591 5551 True 1114.166667 2050 91.203000 843 6261 6 chr6D.!!$R2 5418
3 TraesCS6A01G143100 chr6B 183713875 183720951 7076 True 832.687500 1836 92.879125 875 6261 8 chr6B.!!$R2 5386
4 TraesCS6A01G143100 chr6B 40497030 40497667 637 True 647.000000 647 85.423000 1 621 1 chr6B.!!$R1 620
5 TraesCS6A01G143100 chr7B 586700674 586701300 626 True 859.000000 859 91.561000 1 622 1 chr7B.!!$R1 621
6 TraesCS6A01G143100 chr1D 475866356 475866987 631 False 830.000000 830 90.694000 2 621 1 chr1D.!!$F2 619
7 TraesCS6A01G143100 chr1B 525378388 525379022 634 True 773.000000 773 89.028000 1 621 1 chr1B.!!$R1 620
8 TraesCS6A01G143100 chrUn 37814807 37815416 609 False 758.000000 758 89.030000 1 624 1 chrUn.!!$F1 623
9 TraesCS6A01G143100 chr7A 229627987 229628632 645 False 723.000000 723 87.289000 1 635 1 chr7A.!!$F1 634
10 TraesCS6A01G143100 chr2D 21305108 21305728 620 False 680.000000 680 86.709000 3 621 1 chr2D.!!$F1 618

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 731 0.036010 CCGTTGGCAGGACTGATTCT 60.036 55.0 3.00 0.00 0.00 2.40 F
1002 1057 0.112412 ACAAGAATGCCCCTTCCGTT 59.888 50.0 0.00 0.00 0.00 4.44 F
2001 2107 0.174162 GCCATTGGATGTGTCTTGGC 59.826 55.0 6.95 0.00 37.54 4.52 F
3845 4255 0.251297 TTTGTACTCCCTCCGTCCGA 60.251 55.0 0.00 0.00 0.00 4.55 F
3953 4363 0.032813 ACTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
3956 4366 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.00 46.06 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2107 0.388907 CAAAACAAGCTCATGGGCGG 60.389 55.000 12.97 11.43 37.29 6.13 R
2054 2163 1.395954 CTGCACATCGACATGGACAAG 59.604 52.381 0.00 0.00 33.82 3.16 R
3934 4344 0.032813 TCCCTCCGTCCGGAAATAGT 60.033 55.000 5.23 0.00 44.66 2.12 R
4784 5292 0.033011 ACGATGAGCACCTACTCCCT 60.033 55.000 0.00 0.00 35.72 4.20 R
4968 5485 0.532862 ACAAGGTCACACGAGCCAAG 60.533 55.000 0.00 0.00 40.69 3.61 R
5344 6135 0.743688 TCTCTCTCCGCAAGCATCTC 59.256 55.000 0.00 0.00 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 5.919755 TCAACCCGCAGTACATATCAAATA 58.080 37.500 0.00 0.00 0.00 1.40
191 205 8.934023 TCTGAATATGATGTTATTTTACCCCC 57.066 34.615 0.00 0.00 0.00 5.40
251 269 6.829811 TCAATAGTGCATGATCCATCTTTTCA 59.170 34.615 0.00 0.00 0.00 2.69
330 350 1.145325 ACCCAACAAAACCGGTATGGA 59.855 47.619 20.70 0.00 42.00 3.41
355 380 6.142817 AGACGAAAAACACTAAATGATGCAC 58.857 36.000 0.00 0.00 0.00 4.57
357 382 4.909305 CGAAAAACACTAAATGATGCACGT 59.091 37.500 0.00 0.00 0.00 4.49
522 572 3.681593 TGGGATGCCATTTGTTGAAAG 57.318 42.857 0.00 0.00 0.00 2.62
528 578 3.465871 TGCCATTTGTTGAAAGAAAGGC 58.534 40.909 13.96 13.96 36.71 4.35
558 608 1.112113 TTAGAGTCCGGAGTCATGGC 58.888 55.000 35.01 13.73 33.26 4.40
625 680 1.328279 GGCCCTTTTGCTAGTTGTGT 58.672 50.000 0.00 0.00 0.00 3.72
626 681 2.510613 GGCCCTTTTGCTAGTTGTGTA 58.489 47.619 0.00 0.00 0.00 2.90
627 682 3.089284 GGCCCTTTTGCTAGTTGTGTAT 58.911 45.455 0.00 0.00 0.00 2.29
628 683 3.128764 GGCCCTTTTGCTAGTTGTGTATC 59.871 47.826 0.00 0.00 0.00 2.24
630 685 4.217550 GCCCTTTTGCTAGTTGTGTATCAA 59.782 41.667 0.00 0.00 0.00 2.57
631 686 5.278758 GCCCTTTTGCTAGTTGTGTATCAAA 60.279 40.000 0.00 0.00 37.81 2.69
632 687 6.381801 CCCTTTTGCTAGTTGTGTATCAAAG 58.618 40.000 0.00 0.00 37.81 2.77
633 688 6.016276 CCCTTTTGCTAGTTGTGTATCAAAGT 60.016 38.462 0.00 0.00 37.81 2.66
634 689 7.174253 CCCTTTTGCTAGTTGTGTATCAAAGTA 59.826 37.037 0.00 0.00 37.81 2.24
635 690 8.730680 CCTTTTGCTAGTTGTGTATCAAAGTAT 58.269 33.333 0.00 0.00 37.81 2.12
636 691 9.546909 CTTTTGCTAGTTGTGTATCAAAGTATG 57.453 33.333 0.00 0.00 37.81 2.39
637 692 8.615878 TTTGCTAGTTGTGTATCAAAGTATGT 57.384 30.769 0.00 0.00 37.81 2.29
638 693 8.615878 TTGCTAGTTGTGTATCAAAGTATGTT 57.384 30.769 0.00 0.00 37.81 2.71
639 694 9.713713 TTGCTAGTTGTGTATCAAAGTATGTTA 57.286 29.630 0.00 0.00 37.81 2.41
640 695 9.146984 TGCTAGTTGTGTATCAAAGTATGTTAC 57.853 33.333 0.00 0.00 37.81 2.50
641 696 9.146984 GCTAGTTGTGTATCAAAGTATGTTACA 57.853 33.333 0.00 0.00 37.81 2.41
644 699 9.162764 AGTTGTGTATCAAAGTATGTTACATCC 57.837 33.333 0.00 0.00 37.81 3.51
645 700 8.941977 GTTGTGTATCAAAGTATGTTACATCCA 58.058 33.333 0.00 0.00 37.81 3.41
646 701 8.487313 TGTGTATCAAAGTATGTTACATCCAC 57.513 34.615 0.00 0.00 0.00 4.02
647 702 8.097662 TGTGTATCAAAGTATGTTACATCCACA 58.902 33.333 0.00 0.51 0.00 4.17
648 703 9.109393 GTGTATCAAAGTATGTTACATCCACAT 57.891 33.333 0.00 0.00 38.45 3.21
649 704 9.325198 TGTATCAAAGTATGTTACATCCACATC 57.675 33.333 0.00 0.00 36.28 3.06
650 705 7.807977 ATCAAAGTATGTTACATCCACATCC 57.192 36.000 0.00 0.00 36.28 3.51
651 706 6.716284 TCAAAGTATGTTACATCCACATCCA 58.284 36.000 0.00 0.00 36.28 3.41
652 707 6.597672 TCAAAGTATGTTACATCCACATCCAC 59.402 38.462 0.00 0.00 36.28 4.02
653 708 5.957771 AGTATGTTACATCCACATCCACT 57.042 39.130 0.00 0.00 36.28 4.00
654 709 5.674525 AGTATGTTACATCCACATCCACTG 58.325 41.667 0.00 0.00 36.28 3.66
655 710 4.574674 ATGTTACATCCACATCCACTGT 57.425 40.909 0.00 0.00 39.20 3.55
656 711 3.937814 TGTTACATCCACATCCACTGTC 58.062 45.455 0.00 0.00 35.29 3.51
657 712 3.270877 GTTACATCCACATCCACTGTCC 58.729 50.000 0.00 0.00 35.29 4.02
658 713 0.620556 ACATCCACATCCACTGTCCC 59.379 55.000 0.00 0.00 35.29 4.46
659 714 0.462581 CATCCACATCCACTGTCCCG 60.463 60.000 0.00 0.00 35.29 5.14
660 715 0.909610 ATCCACATCCACTGTCCCGT 60.910 55.000 0.00 0.00 35.29 5.28
661 716 1.125093 TCCACATCCACTGTCCCGTT 61.125 55.000 0.00 0.00 35.29 4.44
662 717 0.955428 CCACATCCACTGTCCCGTTG 60.955 60.000 0.00 0.00 35.29 4.10
663 718 0.955428 CACATCCACTGTCCCGTTGG 60.955 60.000 0.00 0.00 35.29 3.77
664 719 2.040544 CATCCACTGTCCCGTTGGC 61.041 63.158 0.00 0.00 0.00 4.52
665 720 2.525124 ATCCACTGTCCCGTTGGCA 61.525 57.895 0.00 0.00 0.00 4.92
666 721 2.469465 ATCCACTGTCCCGTTGGCAG 62.469 60.000 2.57 2.57 39.92 4.85
667 722 2.669569 CACTGTCCCGTTGGCAGG 60.670 66.667 8.43 0.00 38.99 4.85
668 723 2.847234 ACTGTCCCGTTGGCAGGA 60.847 61.111 8.43 0.00 38.99 3.86
672 727 2.525629 TCCCGTTGGCAGGACTGA 60.526 61.111 3.00 0.00 0.00 3.41
673 728 1.918293 TCCCGTTGGCAGGACTGAT 60.918 57.895 3.00 0.00 0.00 2.90
674 729 1.002134 CCCGTTGGCAGGACTGATT 60.002 57.895 3.00 0.00 0.00 2.57
675 730 1.026718 CCCGTTGGCAGGACTGATTC 61.027 60.000 3.00 0.00 0.00 2.52
676 731 0.036010 CCGTTGGCAGGACTGATTCT 60.036 55.000 3.00 0.00 0.00 2.40
677 732 1.363744 CGTTGGCAGGACTGATTCTC 58.636 55.000 3.00 0.00 0.00 2.87
678 733 1.066573 CGTTGGCAGGACTGATTCTCT 60.067 52.381 3.00 0.00 0.00 3.10
679 734 2.166459 CGTTGGCAGGACTGATTCTCTA 59.834 50.000 3.00 0.00 0.00 2.43
680 735 3.368427 CGTTGGCAGGACTGATTCTCTAA 60.368 47.826 3.00 0.00 0.00 2.10
681 736 4.579869 GTTGGCAGGACTGATTCTCTAAA 58.420 43.478 3.00 0.00 0.00 1.85
682 737 4.478206 TGGCAGGACTGATTCTCTAAAG 57.522 45.455 3.00 0.00 0.00 1.85
683 738 4.096681 TGGCAGGACTGATTCTCTAAAGA 58.903 43.478 3.00 0.00 0.00 2.52
684 739 4.718774 TGGCAGGACTGATTCTCTAAAGAT 59.281 41.667 3.00 0.00 0.00 2.40
685 740 5.899547 TGGCAGGACTGATTCTCTAAAGATA 59.100 40.000 3.00 0.00 0.00 1.98
686 741 6.556495 TGGCAGGACTGATTCTCTAAAGATAT 59.444 38.462 3.00 0.00 0.00 1.63
687 742 7.730332 TGGCAGGACTGATTCTCTAAAGATATA 59.270 37.037 3.00 0.00 0.00 0.86
688 743 8.589338 GGCAGGACTGATTCTCTAAAGATATAA 58.411 37.037 3.00 0.00 0.00 0.98
710 765 8.964420 ATAATCCAGTTGTGAATTTTACGTTG 57.036 30.769 0.00 0.00 0.00 4.10
711 766 5.821516 TCCAGTTGTGAATTTTACGTTGT 57.178 34.783 0.00 0.00 0.00 3.32
712 767 6.922247 TCCAGTTGTGAATTTTACGTTGTA 57.078 33.333 0.00 0.00 0.00 2.41
713 768 6.717413 TCCAGTTGTGAATTTTACGTTGTAC 58.283 36.000 0.00 0.00 0.00 2.90
714 769 6.539464 TCCAGTTGTGAATTTTACGTTGTACT 59.461 34.615 0.00 0.00 0.00 2.73
715 770 6.849305 CCAGTTGTGAATTTTACGTTGTACTC 59.151 38.462 0.00 0.00 0.00 2.59
716 771 6.849305 CAGTTGTGAATTTTACGTTGTACTCC 59.151 38.462 0.00 0.00 0.00 3.85
717 772 5.927954 TGTGAATTTTACGTTGTACTCCC 57.072 39.130 0.00 0.00 0.00 4.30
718 773 5.613329 TGTGAATTTTACGTTGTACTCCCT 58.387 37.500 0.00 0.00 0.00 4.20
719 774 5.697633 TGTGAATTTTACGTTGTACTCCCTC 59.302 40.000 0.00 0.00 0.00 4.30
720 775 5.121298 GTGAATTTTACGTTGTACTCCCTCC 59.879 44.000 0.00 0.00 0.00 4.30
721 776 3.302365 TTTTACGTTGTACTCCCTCCG 57.698 47.619 0.00 0.00 0.00 4.63
722 777 1.909700 TTACGTTGTACTCCCTCCGT 58.090 50.000 0.00 0.00 0.00 4.69
723 778 2.779755 TACGTTGTACTCCCTCCGTA 57.220 50.000 0.00 0.00 0.00 4.02
724 779 1.909700 ACGTTGTACTCCCTCCGTAA 58.090 50.000 0.00 0.00 0.00 3.18
725 780 2.238521 ACGTTGTACTCCCTCCGTAAA 58.761 47.619 0.00 0.00 0.00 2.01
726 781 2.029918 ACGTTGTACTCCCTCCGTAAAC 60.030 50.000 0.00 0.00 0.00 2.01
727 782 2.030007 CGTTGTACTCCCTCCGTAAACA 60.030 50.000 0.00 0.00 0.00 2.83
728 783 3.552684 CGTTGTACTCCCTCCGTAAACAA 60.553 47.826 0.00 0.00 0.00 2.83
729 784 3.947910 TGTACTCCCTCCGTAAACAAG 57.052 47.619 0.00 0.00 0.00 3.16
730 785 3.233507 TGTACTCCCTCCGTAAACAAGT 58.766 45.455 0.00 0.00 0.00 3.16
731 786 4.406456 TGTACTCCCTCCGTAAACAAGTA 58.594 43.478 0.00 0.00 0.00 2.24
732 787 5.018809 TGTACTCCCTCCGTAAACAAGTAT 58.981 41.667 0.00 0.00 0.00 2.12
733 788 6.186957 TGTACTCCCTCCGTAAACAAGTATA 58.813 40.000 0.00 0.00 0.00 1.47
734 789 6.663093 TGTACTCCCTCCGTAAACAAGTATAA 59.337 38.462 0.00 0.00 0.00 0.98
735 790 6.610075 ACTCCCTCCGTAAACAAGTATAAA 57.390 37.500 0.00 0.00 0.00 1.40
736 791 7.008021 ACTCCCTCCGTAAACAAGTATAAAA 57.992 36.000 0.00 0.00 0.00 1.52
737 792 7.101700 ACTCCCTCCGTAAACAAGTATAAAAG 58.898 38.462 0.00 0.00 0.00 2.27
738 793 7.008021 TCCCTCCGTAAACAAGTATAAAAGT 57.992 36.000 0.00 0.00 0.00 2.66
739 794 6.875195 TCCCTCCGTAAACAAGTATAAAAGTG 59.125 38.462 0.00 0.00 0.00 3.16
740 795 6.652062 CCCTCCGTAAACAAGTATAAAAGTGT 59.348 38.462 0.00 0.00 0.00 3.55
741 796 7.173735 CCCTCCGTAAACAAGTATAAAAGTGTT 59.826 37.037 0.00 0.00 35.77 3.32
742 797 8.562052 CCTCCGTAAACAAGTATAAAAGTGTTT 58.438 33.333 5.98 5.98 44.23 2.83
810 865 7.971168 ACAGATGAAGTACTATCAAAGAAGTCG 59.029 37.037 8.09 0.00 0.00 4.18
811 866 7.971168 CAGATGAAGTACTATCAAAGAAGTCGT 59.029 37.037 8.09 0.00 0.00 4.34
812 867 8.524487 AGATGAAGTACTATCAAAGAAGTCGTT 58.476 33.333 8.09 0.00 0.00 3.85
813 868 9.141400 GATGAAGTACTATCAAAGAAGTCGTTT 57.859 33.333 0.00 0.00 0.00 3.60
814 869 8.516811 TGAAGTACTATCAAAGAAGTCGTTTC 57.483 34.615 0.00 0.00 35.97 2.78
815 870 8.139350 TGAAGTACTATCAAAGAAGTCGTTTCA 58.861 33.333 0.00 0.00 38.31 2.69
816 871 9.141400 GAAGTACTATCAAAGAAGTCGTTTCAT 57.859 33.333 0.00 0.00 38.31 2.57
817 872 9.490379 AAGTACTATCAAAGAAGTCGTTTCATT 57.510 29.630 0.00 0.00 38.31 2.57
818 873 8.926710 AGTACTATCAAAGAAGTCGTTTCATTG 58.073 33.333 0.00 11.41 42.80 2.82
819 874 7.730364 ACTATCAAAGAAGTCGTTTCATTGT 57.270 32.000 14.85 8.81 42.33 2.71
820 875 7.797819 ACTATCAAAGAAGTCGTTTCATTGTC 58.202 34.615 14.85 0.00 42.33 3.18
821 876 5.078153 TCAAAGAAGTCGTTTCATTGTCG 57.922 39.130 14.85 0.00 42.33 4.35
822 877 4.806775 TCAAAGAAGTCGTTTCATTGTCGA 59.193 37.500 14.85 0.00 42.33 4.20
823 878 5.465390 TCAAAGAAGTCGTTTCATTGTCGAT 59.535 36.000 14.85 0.00 42.33 3.59
824 879 4.910746 AGAAGTCGTTTCATTGTCGATG 57.089 40.909 0.00 0.00 38.31 3.84
825 880 4.556233 AGAAGTCGTTTCATTGTCGATGA 58.444 39.130 0.00 0.00 42.95 2.92
832 887 2.502280 TCATTGTCGATGAAAACGCG 57.498 45.000 3.53 3.53 41.73 6.01
833 888 1.127766 TCATTGTCGATGAAAACGCGG 59.872 47.619 12.47 0.00 41.73 6.46
834 889 0.179200 ATTGTCGATGAAAACGCGGC 60.179 50.000 12.47 0.00 29.54 6.53
835 890 2.097728 GTCGATGAAAACGCGGCC 59.902 61.111 12.47 0.00 29.54 6.13
836 891 2.047655 TCGATGAAAACGCGGCCT 60.048 55.556 12.47 0.00 29.54 5.19
837 892 2.098233 TCGATGAAAACGCGGCCTC 61.098 57.895 12.47 3.62 29.54 4.70
838 893 2.100631 CGATGAAAACGCGGCCTCT 61.101 57.895 12.47 0.00 0.00 3.69
839 894 1.635663 CGATGAAAACGCGGCCTCTT 61.636 55.000 12.47 1.14 0.00 2.85
840 895 1.365699 GATGAAAACGCGGCCTCTTA 58.634 50.000 12.47 0.00 0.00 2.10
841 896 1.940613 GATGAAAACGCGGCCTCTTAT 59.059 47.619 12.47 0.00 0.00 1.73
868 923 4.857871 TGACAAATGTATCTTACGCTGC 57.142 40.909 0.00 0.00 0.00 5.25
882 937 1.819288 ACGCTGCGCCTATATCTGTAT 59.181 47.619 23.51 0.00 0.00 2.29
965 1020 1.468520 CCTCGCCATTCACGACAAAAT 59.531 47.619 0.00 0.00 35.35 1.82
971 1026 6.153067 TCGCCATTCACGACAAAATAAAAAT 58.847 32.000 0.00 0.00 33.96 1.82
1000 1055 0.322456 TGACAAGAATGCCCCTTCCG 60.322 55.000 0.00 0.00 0.00 4.30
1002 1057 0.112412 ACAAGAATGCCCCTTCCGTT 59.888 50.000 0.00 0.00 0.00 4.44
1109 1164 3.661648 GCCACCACCATCCCACCT 61.662 66.667 0.00 0.00 0.00 4.00
1111 1169 2.677228 CACCACCATCCCACCTCC 59.323 66.667 0.00 0.00 0.00 4.30
1168 1226 2.355363 CACGCCACCTCGAACGAA 60.355 61.111 0.00 0.00 0.00 3.85
1283 1350 2.062177 TAACGAGCCCCTACCTGCC 61.062 63.158 0.00 0.00 0.00 4.85
1401 1477 1.406898 TCTGTTGCGAATTTGGTTGCA 59.593 42.857 0.00 0.00 35.15 4.08
1458 1534 2.954753 GCTTGTGTTGCGAGGACCG 61.955 63.158 0.00 0.00 42.21 4.79
1460 1536 0.670546 CTTGTGTTGCGAGGACCGAT 60.671 55.000 0.00 0.00 41.76 4.18
1523 1599 5.817296 TCCGAAAATGTTCACTGATATCTGG 59.183 40.000 13.48 4.93 32.89 3.86
1598 1680 8.284693 TGTTTTTCTTAGAAAATGGTACTACGC 58.715 33.333 19.12 3.38 31.80 4.42
1600 1682 8.556213 TTTTCTTAGAAAATGGTACTACGCAT 57.444 30.769 15.24 0.00 0.00 4.73
1601 1683 7.766219 TTCTTAGAAAATGGTACTACGCATC 57.234 36.000 0.00 0.00 0.00 3.91
1602 1684 7.108841 TCTTAGAAAATGGTACTACGCATCT 57.891 36.000 0.00 0.00 0.00 2.90
1603 1685 8.229253 TCTTAGAAAATGGTACTACGCATCTA 57.771 34.615 0.00 0.00 0.00 1.98
1618 1700 6.349973 ACGCATCTATGTATTTGAACTGTG 57.650 37.500 0.00 0.00 0.00 3.66
1644 1726 7.970061 GTGTATGTATGCATGTTTCAATCTTGT 59.030 33.333 10.16 0.00 36.58 3.16
1647 1729 7.160547 TGTATGCATGTTTCAATCTTGTGAT 57.839 32.000 10.16 0.00 33.70 3.06
1676 1758 5.411781 AGTCCTAGTAGCAGTTCATTTTCG 58.588 41.667 0.00 0.00 0.00 3.46
1709 1791 2.939460 GGCACCAGCGTTGAAATAAT 57.061 45.000 0.00 0.00 43.41 1.28
1710 1792 3.230743 GGCACCAGCGTTGAAATAATT 57.769 42.857 0.00 0.00 43.41 1.40
1826 1932 4.257267 TGTGATGTGAACACCTACTCTG 57.743 45.455 2.46 0.00 37.45 3.35
1864 1970 1.996292 CGAGGAATTCGTGCTCTTGA 58.004 50.000 5.18 0.00 42.37 3.02
1868 1974 3.330267 AGGAATTCGTGCTCTTGAAGAC 58.670 45.455 0.00 0.00 0.00 3.01
1884 1990 5.675684 TGAAGACCATCACTATGTGCTTA 57.324 39.130 0.00 0.00 32.98 3.09
1920 2026 5.634118 TCTGTTCTTCATGAAATGGGAACT 58.366 37.500 26.01 0.00 46.65 3.01
1975 2081 6.197282 CGTGATCTGTATTGTGTAGTGCTAAG 59.803 42.308 0.00 0.00 0.00 2.18
2001 2107 0.174162 GCCATTGGATGTGTCTTGGC 59.826 55.000 6.95 0.00 37.54 4.52
2004 2110 1.315257 ATTGGATGTGTCTTGGCCGC 61.315 55.000 0.00 0.00 0.00 6.53
2026 2132 4.009675 CCCATGAGCTTGTTTTGCTACTA 58.990 43.478 0.00 0.00 41.30 1.82
2032 2138 4.703897 AGCTTGTTTTGCTACTACTCACA 58.296 39.130 0.00 0.00 39.21 3.58
2100 2210 3.742882 CGAGCTCTTCACTGTTTGAATCA 59.257 43.478 12.85 0.00 43.54 2.57
2114 2224 8.357402 ACTGTTTGAATCACTTATAACCAAACC 58.643 33.333 0.00 0.00 40.35 3.27
2117 2227 7.696992 TTGAATCACTTATAACCAAACCCTC 57.303 36.000 0.00 0.00 0.00 4.30
2151 2261 1.160137 CAGCTTACAGTGAACCCTGC 58.840 55.000 0.00 0.00 35.83 4.85
2255 2365 2.100128 CTCAGGGGAGTGAGGATGAT 57.900 55.000 0.00 0.00 40.39 2.45
2266 2376 1.076265 AGGATGATGGGACCGTCGA 60.076 57.895 6.12 0.00 34.87 4.20
2294 2404 5.068591 ACTTTTAACGGAAGCAAAGACCAAT 59.931 36.000 0.00 0.00 32.93 3.16
2378 2488 7.487509 CAGTTGTTGAATGTGTGTTTGTCATTA 59.512 33.333 0.00 0.00 32.90 1.90
2757 3157 4.930963 CACTGTGTGGCATTCAGTAAAAA 58.069 39.130 20.88 0.00 39.89 1.94
2921 3322 3.243907 GGCAGCATACTCCTCGAGTTAAT 60.244 47.826 12.31 0.00 40.28 1.40
2924 3325 4.038042 CAGCATACTCCTCGAGTTAATGGA 59.962 45.833 12.31 0.00 40.28 3.41
3017 3418 6.500684 TTGTTATTGCTTTCACCATCTCTC 57.499 37.500 0.00 0.00 0.00 3.20
3040 3441 8.212312 TCTCTGTTATGTTAGGTTTGTTTACCA 58.788 33.333 0.00 0.00 40.82 3.25
3419 3821 2.952310 GTGAAGCAGGTAAATCATCCCC 59.048 50.000 0.00 0.00 0.00 4.81
3476 3878 7.816640 AGCAGAATGTGTTTATTACGTGAATT 58.183 30.769 0.00 0.00 39.31 2.17
3478 3880 7.045612 GCAGAATGTGTTTATTACGTGAATTCG 60.046 37.037 0.00 0.00 39.31 3.34
3649 4059 9.807921 AAAATGAAAAGGTTCTATACTTCCAGA 57.192 29.630 0.00 0.00 34.60 3.86
3651 4061 7.554959 TGAAAAGGTTCTATACTTCCAGACT 57.445 36.000 0.00 0.00 34.60 3.24
3652 4062 7.974504 TGAAAAGGTTCTATACTTCCAGACTT 58.025 34.615 0.00 0.00 34.60 3.01
3653 4063 8.095169 TGAAAAGGTTCTATACTTCCAGACTTC 58.905 37.037 0.00 0.00 34.60 3.01
3654 4064 6.547930 AAGGTTCTATACTTCCAGACTTCC 57.452 41.667 0.00 0.00 0.00 3.46
3655 4065 5.590818 AGGTTCTATACTTCCAGACTTCCA 58.409 41.667 0.00 0.00 0.00 3.53
3656 4066 5.659079 AGGTTCTATACTTCCAGACTTCCAG 59.341 44.000 0.00 0.00 0.00 3.86
3657 4067 5.422650 GGTTCTATACTTCCAGACTTCCAGT 59.577 44.000 0.00 0.00 0.00 4.00
3658 4068 6.606395 GGTTCTATACTTCCAGACTTCCAGTA 59.394 42.308 0.00 0.00 0.00 2.74
3829 4239 7.439056 ACACTTTCAAGATGGCTGTTTATTTTG 59.561 33.333 0.00 0.00 0.00 2.44
3830 4240 7.439056 CACTTTCAAGATGGCTGTTTATTTTGT 59.561 33.333 0.00 0.00 0.00 2.83
3831 4241 8.637986 ACTTTCAAGATGGCTGTTTATTTTGTA 58.362 29.630 0.00 0.00 0.00 2.41
3832 4242 8.810652 TTTCAAGATGGCTGTTTATTTTGTAC 57.189 30.769 0.00 0.00 0.00 2.90
3833 4243 7.759489 TCAAGATGGCTGTTTATTTTGTACT 57.241 32.000 0.00 0.00 0.00 2.73
3834 4244 7.816640 TCAAGATGGCTGTTTATTTTGTACTC 58.183 34.615 0.00 0.00 0.00 2.59
3835 4245 6.759497 AGATGGCTGTTTATTTTGTACTCC 57.241 37.500 0.00 0.00 0.00 3.85
3836 4246 5.652452 AGATGGCTGTTTATTTTGTACTCCC 59.348 40.000 0.00 0.00 0.00 4.30
3837 4247 4.993028 TGGCTGTTTATTTTGTACTCCCT 58.007 39.130 0.00 0.00 0.00 4.20
3838 4248 5.007682 TGGCTGTTTATTTTGTACTCCCTC 58.992 41.667 0.00 0.00 0.00 4.30
3839 4249 4.398358 GGCTGTTTATTTTGTACTCCCTCC 59.602 45.833 0.00 0.00 0.00 4.30
3840 4250 4.094442 GCTGTTTATTTTGTACTCCCTCCG 59.906 45.833 0.00 0.00 0.00 4.63
3841 4251 5.231702 TGTTTATTTTGTACTCCCTCCGT 57.768 39.130 0.00 0.00 0.00 4.69
3842 4252 5.240121 TGTTTATTTTGTACTCCCTCCGTC 58.760 41.667 0.00 0.00 0.00 4.79
3843 4253 4.476628 TTATTTTGTACTCCCTCCGTCC 57.523 45.455 0.00 0.00 0.00 4.79
3844 4254 0.604578 TTTTGTACTCCCTCCGTCCG 59.395 55.000 0.00 0.00 0.00 4.79
3845 4255 0.251297 TTTGTACTCCCTCCGTCCGA 60.251 55.000 0.00 0.00 0.00 4.55
3846 4256 0.251297 TTGTACTCCCTCCGTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
3847 4257 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
3848 4258 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
3849 4259 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
3850 4260 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3851 4261 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3852 4262 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3853 4263 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3854 4264 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3855 4265 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3856 4266 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3857 4267 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3858 4268 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3859 4269 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3860 4270 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3861 4271 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3862 4272 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3863 4273 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3864 4274 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3865 4275 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
3866 4276 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
3867 4277 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
3868 4278 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
3876 4286 9.918630 ACTTGTCATCAAAATGGATAAAAGAAG 57.081 29.630 0.00 0.00 33.42 2.85
3914 4324 9.845214 ACTAAAATACATCTAGATACATCCCCT 57.155 33.333 4.54 0.00 0.00 4.79
3921 4331 8.152023 ACATCTAGATACATCCCCTTTAATCC 57.848 38.462 4.54 0.00 0.00 3.01
3922 4332 7.739444 ACATCTAGATACATCCCCTTTAATCCA 59.261 37.037 4.54 0.00 0.00 3.41
3923 4333 8.776119 CATCTAGATACATCCCCTTTAATCCAT 58.224 37.037 4.54 0.00 0.00 3.41
3924 4334 8.757307 TCTAGATACATCCCCTTTAATCCATT 57.243 34.615 0.00 0.00 0.00 3.16
3925 4335 9.182642 TCTAGATACATCCCCTTTAATCCATTT 57.817 33.333 0.00 0.00 0.00 2.32
3926 4336 9.813826 CTAGATACATCCCCTTTAATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
3927 4337 8.482852 AGATACATCCCCTTTAATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
3928 4338 8.288812 AGATACATCCCCTTTAATCCATTTTGA 58.711 33.333 0.00 0.00 0.00 2.69
3929 4339 9.093458 GATACATCCCCTTTAATCCATTTTGAT 57.907 33.333 0.00 0.00 0.00 2.57
3930 4340 7.128234 ACATCCCCTTTAATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
3931 4341 6.902416 ACATCCCCTTTAATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
3932 4342 6.790232 TCCCCTTTAATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
3933 4343 6.259893 TCCCCTTTAATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
3934 4344 6.728164 TCCCCTTTAATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
3935 4345 6.818142 CCCCTTTAATCCATTTTGATGACAAC 59.182 38.462 0.00 0.00 35.63 3.32
3936 4346 7.310609 CCCCTTTAATCCATTTTGATGACAACT 60.311 37.037 0.00 0.00 35.63 3.16
3937 4347 8.748412 CCCTTTAATCCATTTTGATGACAACTA 58.252 33.333 0.00 0.00 35.63 2.24
3943 4353 6.851609 TCCATTTTGATGACAACTATTTCCG 58.148 36.000 0.00 0.00 35.63 4.30
3944 4354 6.035843 CCATTTTGATGACAACTATTTCCGG 58.964 40.000 0.00 0.00 35.63 5.14
3945 4355 6.127758 CCATTTTGATGACAACTATTTCCGGA 60.128 38.462 0.00 0.00 35.63 5.14
3946 4356 5.873179 TTTGATGACAACTATTTCCGGAC 57.127 39.130 1.83 0.00 35.63 4.79
3947 4357 3.517602 TGATGACAACTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
3948 4358 2.373540 TGACAACTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
3949 4359 1.894466 TGACAACTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
3950 4360 2.094390 TGACAACTATTTCCGGACGGAG 60.094 50.000 13.64 3.57 46.06 4.63
3951 4361 1.206371 ACAACTATTTCCGGACGGAGG 59.794 52.381 13.64 8.21 46.06 4.30
3952 4362 0.828677 AACTATTTCCGGACGGAGGG 59.171 55.000 13.64 7.89 46.06 4.30
3953 4363 0.032813 ACTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
3954 4364 0.674534 CTATTTCCGGACGGAGGGAG 59.325 60.000 13.64 8.24 46.06 4.30
3955 4365 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
3956 4366 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4130 4541 4.578105 AGCCTATACTTCTTTGCTCATTGC 59.422 41.667 0.00 0.00 43.25 3.56
4192 4616 8.347771 ACGAAATGTGATTTTCATCCTATGATG 58.652 33.333 1.80 1.80 40.14 3.07
4212 4636 2.826725 TGTTCATGCATCTGAATTGGCA 59.173 40.909 6.05 0.00 37.47 4.92
4265 4769 7.931275 AGTTACTTTGTTTTTCTCCTGATGAC 58.069 34.615 0.00 0.00 0.00 3.06
4268 4772 5.067805 ACTTTGTTTTTCTCCTGATGACCAC 59.932 40.000 0.00 0.00 0.00 4.16
4269 4773 4.163441 TGTTTTTCTCCTGATGACCACA 57.837 40.909 0.00 0.00 0.00 4.17
4351 4856 4.584874 TGGCACTTCGATATTCTTCCAAA 58.415 39.130 0.00 0.00 0.00 3.28
4385 4893 5.221028 CCGCTTTATGTGAATATGGCAGAAA 60.221 40.000 0.00 0.00 0.00 2.52
4574 5082 6.954684 TCCTACAAGAGGTTAGAGTTGAGATT 59.045 38.462 0.00 0.00 46.76 2.40
4689 5197 6.275335 TCATTCTAAAAATATTGCCTGCTGC 58.725 36.000 0.00 0.00 41.77 5.25
4712 5220 6.614160 GCTAGTAGCAGCTAAATACTACTCC 58.386 44.000 17.47 5.82 43.19 3.85
4713 5221 6.349528 GCTAGTAGCAGCTAAATACTACTCCC 60.350 46.154 17.47 5.58 43.19 4.30
4714 5222 5.707495 AGTAGCAGCTAAATACTACTCCCT 58.293 41.667 2.87 0.00 41.00 4.20
4715 5223 5.771165 AGTAGCAGCTAAATACTACTCCCTC 59.229 44.000 2.87 0.00 41.00 4.30
4716 5224 4.810345 AGCAGCTAAATACTACTCCCTCT 58.190 43.478 0.00 0.00 0.00 3.69
4717 5225 4.586841 AGCAGCTAAATACTACTCCCTCTG 59.413 45.833 0.00 0.00 0.00 3.35
4718 5226 4.342665 GCAGCTAAATACTACTCCCTCTGT 59.657 45.833 0.00 0.00 0.00 3.41
4719 5227 5.163395 GCAGCTAAATACTACTCCCTCTGTT 60.163 44.000 0.00 0.00 0.00 3.16
4720 5228 6.508777 CAGCTAAATACTACTCCCTCTGTTC 58.491 44.000 0.00 0.00 0.00 3.18
4721 5229 5.599242 AGCTAAATACTACTCCCTCTGTTCC 59.401 44.000 0.00 0.00 0.00 3.62
4722 5230 5.363005 GCTAAATACTACTCCCTCTGTTCCA 59.637 44.000 0.00 0.00 0.00 3.53
4723 5231 6.127140 GCTAAATACTACTCCCTCTGTTCCAA 60.127 42.308 0.00 0.00 0.00 3.53
4724 5232 6.697641 AAATACTACTCCCTCTGTTCCAAA 57.302 37.500 0.00 0.00 0.00 3.28
4725 5233 6.697641 AATACTACTCCCTCTGTTCCAAAA 57.302 37.500 0.00 0.00 0.00 2.44
4726 5234 6.893020 ATACTACTCCCTCTGTTCCAAAAT 57.107 37.500 0.00 0.00 0.00 1.82
4727 5235 7.989947 ATACTACTCCCTCTGTTCCAAAATA 57.010 36.000 0.00 0.00 0.00 1.40
4728 5236 6.301169 ACTACTCCCTCTGTTCCAAAATAG 57.699 41.667 0.00 0.00 0.00 1.73
4729 5237 6.023603 ACTACTCCCTCTGTTCCAAAATAGA 58.976 40.000 0.00 0.00 32.42 1.98
4730 5238 6.674419 ACTACTCCCTCTGTTCCAAAATAGAT 59.326 38.462 0.00 0.00 32.88 1.98
4731 5239 5.749462 ACTCCCTCTGTTCCAAAATAGATG 58.251 41.667 0.00 0.00 32.88 2.90
4732 5240 5.488919 ACTCCCTCTGTTCCAAAATAGATGA 59.511 40.000 0.00 0.00 32.88 2.92
4733 5241 5.745227 TCCCTCTGTTCCAAAATAGATGAC 58.255 41.667 0.00 0.00 32.88 3.06
4734 5242 5.488919 TCCCTCTGTTCCAAAATAGATGACT 59.511 40.000 0.00 0.00 32.88 3.41
4735 5243 5.819901 CCCTCTGTTCCAAAATAGATGACTC 59.180 44.000 0.00 0.00 32.88 3.36
4736 5244 6.409704 CCTCTGTTCCAAAATAGATGACTCA 58.590 40.000 0.00 0.00 32.88 3.41
4737 5245 6.881065 CCTCTGTTCCAAAATAGATGACTCAA 59.119 38.462 0.00 0.00 32.88 3.02
4738 5246 7.148340 CCTCTGTTCCAAAATAGATGACTCAAC 60.148 40.741 0.00 0.00 32.88 3.18
4739 5247 7.453393 TCTGTTCCAAAATAGATGACTCAACT 58.547 34.615 0.00 0.00 28.72 3.16
4740 5248 7.939039 TCTGTTCCAAAATAGATGACTCAACTT 59.061 33.333 0.00 0.00 28.72 2.66
4741 5249 8.463930 TGTTCCAAAATAGATGACTCAACTTT 57.536 30.769 0.00 0.00 0.00 2.66
4742 5250 8.352201 TGTTCCAAAATAGATGACTCAACTTTG 58.648 33.333 0.00 0.00 0.00 2.77
4743 5251 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
4744 5252 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
4745 5253 8.999431 TCCAAAATAGATGACTCAACTTTGTAC 58.001 33.333 0.00 0.00 0.00 2.90
4746 5254 9.003658 CCAAAATAGATGACTCAACTTTGTACT 57.996 33.333 0.00 0.00 0.00 2.73
4779 5287 9.739276 ATACAAAGTTGAGTCATCTATTTTGGA 57.261 29.630 14.35 9.09 40.00 3.53
4780 5288 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
4781 5289 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
4782 5290 8.352201 CAAAGTTGAGTCATCTATTTTGGAACA 58.648 33.333 4.14 0.00 35.65 3.18
4783 5291 7.678947 AGTTGAGTCATCTATTTTGGAACAG 57.321 36.000 1.70 0.00 42.39 3.16
4784 5292 7.453393 AGTTGAGTCATCTATTTTGGAACAGA 58.547 34.615 1.70 0.00 42.39 3.41
4785 5293 7.605691 AGTTGAGTCATCTATTTTGGAACAGAG 59.394 37.037 1.70 0.00 42.39 3.35
4786 5294 6.409704 TGAGTCATCTATTTTGGAACAGAGG 58.590 40.000 0.00 0.00 42.39 3.69
4787 5295 5.749462 AGTCATCTATTTTGGAACAGAGGG 58.251 41.667 0.00 0.00 42.39 4.30
4788 5296 5.488919 AGTCATCTATTTTGGAACAGAGGGA 59.511 40.000 0.00 0.00 42.39 4.20
4789 5297 5.819901 GTCATCTATTTTGGAACAGAGGGAG 59.180 44.000 0.00 0.00 42.39 4.30
4790 5298 5.488919 TCATCTATTTTGGAACAGAGGGAGT 59.511 40.000 0.00 0.00 42.39 3.85
4791 5299 6.672218 TCATCTATTTTGGAACAGAGGGAGTA 59.328 38.462 0.00 0.00 42.39 2.59
4917 5434 1.719600 GATCGATGATACCTGCCAGC 58.280 55.000 0.54 0.00 0.00 4.85
4973 5490 4.732106 CGGAGTCCGTATCTTGGC 57.268 61.111 23.83 0.00 42.73 4.52
5025 5542 2.932622 GCTCTTTGCAGATCTTCCGACA 60.933 50.000 0.00 0.00 42.31 4.35
5070 5587 2.100989 CTGTTCTAGGTAGGGTTCGCT 58.899 52.381 0.00 0.00 0.00 4.93
5094 5611 3.835134 TGGATTCACCACTCCCCC 58.165 61.111 0.00 0.00 44.64 5.40
5187 5971 4.312443 TGTAACCTGAAACGGACTCATTC 58.688 43.478 0.00 0.00 0.00 2.67
5306 6097 4.631813 GGAGCGTATTTCATGAGAAGTTGT 59.368 41.667 0.00 0.00 34.71 3.32
5315 6106 8.868522 ATTTCATGAGAAGTTGTCCATTCTTA 57.131 30.769 0.00 0.00 35.93 2.10
5324 6115 9.261035 AGAAGTTGTCCATTCTTAGATCTCTTA 57.739 33.333 0.00 0.00 31.76 2.10
5336 6127 7.946207 TCTTAGATCTCTTATTTCATGAGCGT 58.054 34.615 0.00 0.00 0.00 5.07
5337 6128 9.067986 TCTTAGATCTCTTATTTCATGAGCGTA 57.932 33.333 0.00 0.00 0.00 4.42
5342 6133 8.893219 ATCTCTTATTTCATGAGCGTATTTCA 57.107 30.769 0.00 0.00 0.00 2.69
5354 6146 3.003068 AGCGTATTTCATGAGATGCTTGC 59.997 43.478 8.95 7.38 0.00 4.01
5364 6156 0.746063 AGATGCTTGCGGAGAGAGAG 59.254 55.000 0.00 0.00 0.00 3.20
5435 6227 3.339141 ACCTCTTCTGAAATTCGAAGGC 58.661 45.455 19.36 0.00 37.73 4.35
5440 6232 1.628340 TCTGAAATTCGAAGGCCCTGA 59.372 47.619 3.35 0.00 0.00 3.86
5483 6275 5.368145 TCTTAGTCAGTTTGTGCTTCACAT 58.632 37.500 0.11 0.00 44.16 3.21
5492 6284 1.755959 TGTGCTTCACATGGCAGTTTT 59.244 42.857 0.00 0.00 39.62 2.43
5507 6299 4.026407 GCAGTTTTTGTGTCGTAGAACAC 58.974 43.478 0.32 0.32 39.69 3.32
5545 6337 6.029346 ACAAACTATTTTCAGAATGCCTGG 57.971 37.500 0.00 0.00 43.12 4.45
5546 6338 5.774690 ACAAACTATTTTCAGAATGCCTGGA 59.225 36.000 0.00 0.00 43.12 3.86
5547 6339 5.904362 AACTATTTTCAGAATGCCTGGAC 57.096 39.130 0.00 0.00 43.12 4.02
5548 6340 4.273318 ACTATTTTCAGAATGCCTGGACC 58.727 43.478 0.00 0.00 43.12 4.46
5549 6341 2.978156 TTTTCAGAATGCCTGGACCT 57.022 45.000 0.00 0.00 43.12 3.85
5550 6342 2.205022 TTTCAGAATGCCTGGACCTG 57.795 50.000 0.00 0.00 43.12 4.00
5551 6343 0.329261 TTCAGAATGCCTGGACCTGG 59.671 55.000 13.02 13.02 43.12 4.45
5574 6366 2.876550 GTCTTGGAAAAGTTAGGCGTGT 59.123 45.455 0.00 0.00 0.00 4.49
5648 6446 5.566627 GCATCTTATGTAGAAGAGGGAGAGC 60.567 48.000 3.55 0.00 38.80 4.09
5663 6461 2.981302 AGCGATGCTGCTGGTGTA 59.019 55.556 0.00 0.00 45.28 2.90
5706 6505 3.889538 ACACTACCGATCAAGCATAGCTA 59.110 43.478 0.00 0.00 38.25 3.32
5752 8115 5.823045 GTCTGAAGAAAGGGAAAACTGAAGA 59.177 40.000 0.00 0.00 0.00 2.87
5766 8129 7.041303 GGAAAACTGAAGAATCTTTTAGGTCGT 60.041 37.037 0.00 0.00 0.00 4.34
5804 8306 8.721478 CAGCTGACTTACTAAAAAGAAGCAATA 58.279 33.333 8.42 0.00 39.75 1.90
5805 8307 8.722394 AGCTGACTTACTAAAAAGAAGCAATAC 58.278 33.333 14.04 0.00 39.75 1.89
5806 8308 8.722394 GCTGACTTACTAAAAAGAAGCAATACT 58.278 33.333 9.54 0.00 38.46 2.12
5868 8541 5.220815 CGGAGTATAGCACGTAGAGTCTTTT 60.221 44.000 0.00 0.00 0.00 2.27
5869 8542 6.018425 CGGAGTATAGCACGTAGAGTCTTTTA 60.018 42.308 0.00 0.00 0.00 1.52
5870 8543 7.131565 GGAGTATAGCACGTAGAGTCTTTTAC 58.868 42.308 0.00 0.00 0.00 2.01
5902 8575 0.981943 AGGGAGGAAAAGTGTACGGG 59.018 55.000 0.00 0.00 0.00 5.28
5908 8581 5.510349 GGGAGGAAAAGTGTACGGGATATAC 60.510 48.000 0.00 0.00 0.00 1.47
5931 8604 8.745749 TACGTAGTAGGCTAAGACAGCTGTGA 62.746 46.154 27.27 8.36 46.65 3.58
5943 8616 4.900652 AGACAGCTGTGATAGATTCCTCAT 59.099 41.667 27.27 0.00 0.00 2.90
5944 8617 5.010922 AGACAGCTGTGATAGATTCCTCATC 59.989 44.000 27.27 3.30 0.00 2.92
5948 8621 6.541278 CAGCTGTGATAGATTCCTCATCAAAA 59.459 38.462 5.25 0.00 33.75 2.44
6007 8680 0.520404 CAGTCTTGAGTGTGCATGGC 59.480 55.000 0.00 0.00 0.00 4.40
6014 8687 5.240183 GTCTTGAGTGTGCATGGCATATTAT 59.760 40.000 0.00 0.00 41.91 1.28
6054 8727 5.605564 ATTCGTCGAAACAAATGTGATGA 57.394 34.783 12.40 0.00 0.00 2.92
6122 8795 0.739112 GCAGAGACAGGAAGCGAAGG 60.739 60.000 0.00 0.00 0.00 3.46
6135 8808 3.498774 AGCGAAGGGAATATGAAGCAT 57.501 42.857 0.00 0.00 0.00 3.79
6168 8841 9.202273 GTGAATATCATCATCTAAACTCTGTCC 57.798 37.037 0.00 0.00 0.00 4.02
6171 8844 4.023980 TCATCATCTAAACTCTGTCCCGT 58.976 43.478 0.00 0.00 0.00 5.28
6209 8882 2.070783 GGTTTACAAATCTCGCGACCA 58.929 47.619 3.71 0.00 0.00 4.02
6240 8913 4.205065 AGCATTTCAGTGAGAGAAGAGG 57.795 45.455 0.00 0.00 0.00 3.69
6258 8933 7.740805 AGAAGAGGATACAAAGACAAAACTCT 58.259 34.615 0.00 0.00 41.41 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
194 208 9.934190 CACCATAAATAGCATTTTTAAAATGGC 57.066 29.630 25.62 18.95 0.00 4.40
216 230 5.192176 TCATGCACTATTGATTTAGCACCA 58.808 37.500 0.00 0.00 34.54 4.17
222 236 8.929260 AAGATGGATCATGCACTATTGATTTA 57.071 30.769 2.21 0.00 0.00 1.40
330 350 6.636850 GTGCATCATTTAGTGTTTTTCGTCTT 59.363 34.615 0.00 0.00 0.00 3.01
355 380 5.712217 TTTAGATTTTGATGAGGCGTACG 57.288 39.130 11.84 11.84 0.00 3.67
401 431 5.920840 TGTTGTCAATTCTAAGACGTCTCTG 59.079 40.000 20.33 14.45 37.58 3.35
451 481 3.387699 TCTCGTTGATGATGGCCTCAATA 59.612 43.478 3.32 0.00 37.44 1.90
522 572 4.120589 CTCTAATAGGTTCACGGCCTTTC 58.879 47.826 0.00 0.00 37.54 2.62
528 578 2.034305 CCGGACTCTAATAGGTTCACGG 59.966 54.545 0.00 0.00 0.00 4.94
558 608 3.204382 ACCACAATCCCCTAACCCAATAG 59.796 47.826 0.00 0.00 0.00 1.73
625 680 8.490311 TGGATGTGGATGTAACATACTTTGATA 58.510 33.333 0.85 0.00 39.28 2.15
626 681 7.283127 GTGGATGTGGATGTAACATACTTTGAT 59.717 37.037 0.85 0.00 39.28 2.57
627 682 6.597672 GTGGATGTGGATGTAACATACTTTGA 59.402 38.462 0.85 0.00 39.28 2.69
628 683 6.599244 AGTGGATGTGGATGTAACATACTTTG 59.401 38.462 0.85 0.00 39.28 2.77
630 685 6.115446 CAGTGGATGTGGATGTAACATACTT 58.885 40.000 0.85 0.00 39.28 2.24
631 686 5.189736 ACAGTGGATGTGGATGTAACATACT 59.810 40.000 0.00 0.00 41.91 2.12
632 687 5.428253 ACAGTGGATGTGGATGTAACATAC 58.572 41.667 0.00 0.00 41.91 2.39
633 688 5.396324 GGACAGTGGATGTGGATGTAACATA 60.396 44.000 0.00 0.00 44.17 2.29
634 689 4.517285 GACAGTGGATGTGGATGTAACAT 58.483 43.478 0.00 0.00 44.17 2.71
635 690 3.307410 GGACAGTGGATGTGGATGTAACA 60.307 47.826 0.00 0.00 44.17 2.41
636 691 3.270877 GGACAGTGGATGTGGATGTAAC 58.729 50.000 0.00 0.00 44.17 2.50
637 692 2.238646 GGGACAGTGGATGTGGATGTAA 59.761 50.000 0.00 0.00 44.17 2.41
638 693 1.837439 GGGACAGTGGATGTGGATGTA 59.163 52.381 0.00 0.00 44.17 2.29
639 694 0.620556 GGGACAGTGGATGTGGATGT 59.379 55.000 0.00 0.00 44.17 3.06
640 695 0.462581 CGGGACAGTGGATGTGGATG 60.463 60.000 0.00 0.00 44.17 3.51
641 696 0.909610 ACGGGACAGTGGATGTGGAT 60.910 55.000 0.00 0.00 44.17 3.41
642 697 1.125093 AACGGGACAGTGGATGTGGA 61.125 55.000 0.00 0.00 44.17 4.02
643 698 0.955428 CAACGGGACAGTGGATGTGG 60.955 60.000 0.00 0.00 44.17 4.17
644 699 0.955428 CCAACGGGACAGTGGATGTG 60.955 60.000 0.00 0.00 44.17 3.21
646 701 2.040544 GCCAACGGGACAGTGGATG 61.041 63.158 0.00 0.00 35.59 3.51
647 702 2.351276 GCCAACGGGACAGTGGAT 59.649 61.111 0.00 0.00 35.59 3.41
648 703 3.164977 TGCCAACGGGACAGTGGA 61.165 61.111 0.00 0.00 35.59 4.02
649 704 2.669569 CTGCCAACGGGACAGTGG 60.670 66.667 0.00 0.00 35.14 4.00
650 705 2.669569 CCTGCCAACGGGACAGTG 60.670 66.667 0.00 0.00 46.41 3.66
656 711 1.002134 AATCAGTCCTGCCAACGGG 60.002 57.895 0.00 0.00 44.63 5.28
657 712 0.036010 AGAATCAGTCCTGCCAACGG 60.036 55.000 0.00 0.00 0.00 4.44
658 713 1.066573 AGAGAATCAGTCCTGCCAACG 60.067 52.381 0.00 0.00 37.82 4.10
659 714 2.777832 AGAGAATCAGTCCTGCCAAC 57.222 50.000 0.00 0.00 37.82 3.77
660 715 4.532126 TCTTTAGAGAATCAGTCCTGCCAA 59.468 41.667 0.00 0.00 37.82 4.52
661 716 4.096681 TCTTTAGAGAATCAGTCCTGCCA 58.903 43.478 0.00 0.00 37.82 4.92
662 717 4.744795 TCTTTAGAGAATCAGTCCTGCC 57.255 45.455 0.00 0.00 37.82 4.85
685 740 8.573035 ACAACGTAAAATTCACAACTGGATTAT 58.427 29.630 0.00 0.00 0.00 1.28
686 741 7.932335 ACAACGTAAAATTCACAACTGGATTA 58.068 30.769 0.00 0.00 0.00 1.75
687 742 6.801575 ACAACGTAAAATTCACAACTGGATT 58.198 32.000 0.00 0.00 0.00 3.01
688 743 6.385649 ACAACGTAAAATTCACAACTGGAT 57.614 33.333 0.00 0.00 0.00 3.41
689 744 5.821516 ACAACGTAAAATTCACAACTGGA 57.178 34.783 0.00 0.00 0.00 3.86
690 745 6.721321 AGTACAACGTAAAATTCACAACTGG 58.279 36.000 0.00 0.00 0.00 4.00
691 746 6.849305 GGAGTACAACGTAAAATTCACAACTG 59.151 38.462 0.00 0.00 0.00 3.16
692 747 6.017687 GGGAGTACAACGTAAAATTCACAACT 60.018 38.462 0.00 0.00 0.00 3.16
693 748 6.017687 AGGGAGTACAACGTAAAATTCACAAC 60.018 38.462 0.00 0.00 0.00 3.32
694 749 6.056884 AGGGAGTACAACGTAAAATTCACAA 58.943 36.000 0.00 0.00 0.00 3.33
695 750 5.613329 AGGGAGTACAACGTAAAATTCACA 58.387 37.500 0.00 0.00 0.00 3.58
696 751 5.121298 GGAGGGAGTACAACGTAAAATTCAC 59.879 44.000 0.00 0.00 0.00 3.18
697 752 5.240121 GGAGGGAGTACAACGTAAAATTCA 58.760 41.667 0.00 0.00 0.00 2.57
698 753 4.328169 CGGAGGGAGTACAACGTAAAATTC 59.672 45.833 0.00 0.00 0.00 2.17
699 754 4.248058 CGGAGGGAGTACAACGTAAAATT 58.752 43.478 0.00 0.00 0.00 1.82
700 755 3.259123 ACGGAGGGAGTACAACGTAAAAT 59.741 43.478 0.00 0.00 32.30 1.82
701 756 2.627699 ACGGAGGGAGTACAACGTAAAA 59.372 45.455 0.00 0.00 32.30 1.52
702 757 2.238521 ACGGAGGGAGTACAACGTAAA 58.761 47.619 0.00 0.00 32.30 2.01
703 758 1.909700 ACGGAGGGAGTACAACGTAA 58.090 50.000 0.00 0.00 32.30 3.18
704 759 2.779755 TACGGAGGGAGTACAACGTA 57.220 50.000 0.00 0.00 35.97 3.57
705 760 1.909700 TTACGGAGGGAGTACAACGT 58.090 50.000 0.00 0.00 38.23 3.99
706 761 2.030007 TGTTTACGGAGGGAGTACAACG 60.030 50.000 0.00 0.00 0.00 4.10
707 762 3.665745 TGTTTACGGAGGGAGTACAAC 57.334 47.619 0.00 0.00 0.00 3.32
708 763 3.642848 ACTTGTTTACGGAGGGAGTACAA 59.357 43.478 0.00 0.00 0.00 2.41
709 764 3.233507 ACTTGTTTACGGAGGGAGTACA 58.766 45.455 0.00 0.00 0.00 2.90
710 765 3.949842 ACTTGTTTACGGAGGGAGTAC 57.050 47.619 0.00 0.00 0.00 2.73
711 766 7.716799 TTTATACTTGTTTACGGAGGGAGTA 57.283 36.000 0.00 0.00 0.00 2.59
712 767 6.610075 TTTATACTTGTTTACGGAGGGAGT 57.390 37.500 0.00 0.00 0.00 3.85
713 768 7.064253 CACTTTTATACTTGTTTACGGAGGGAG 59.936 40.741 0.00 0.00 0.00 4.30
714 769 6.875195 CACTTTTATACTTGTTTACGGAGGGA 59.125 38.462 0.00 0.00 0.00 4.20
715 770 6.652062 ACACTTTTATACTTGTTTACGGAGGG 59.348 38.462 0.00 0.00 0.00 4.30
716 771 7.662604 ACACTTTTATACTTGTTTACGGAGG 57.337 36.000 0.00 0.00 0.00 4.30
784 839 7.971168 CGACTTCTTTGATAGTACTTCATCTGT 59.029 37.037 0.00 1.40 0.00 3.41
785 840 7.971168 ACGACTTCTTTGATAGTACTTCATCTG 59.029 37.037 0.00 0.00 0.00 2.90
786 841 8.057536 ACGACTTCTTTGATAGTACTTCATCT 57.942 34.615 0.00 0.00 0.00 2.90
787 842 8.690680 AACGACTTCTTTGATAGTACTTCATC 57.309 34.615 0.00 0.00 0.00 2.92
788 843 9.141400 GAAACGACTTCTTTGATAGTACTTCAT 57.859 33.333 0.00 0.00 0.00 2.57
789 844 8.139350 TGAAACGACTTCTTTGATAGTACTTCA 58.861 33.333 0.00 2.08 34.86 3.02
790 845 8.516811 TGAAACGACTTCTTTGATAGTACTTC 57.483 34.615 0.00 0.00 34.86 3.01
791 846 9.490379 AATGAAACGACTTCTTTGATAGTACTT 57.510 29.630 0.00 0.00 34.86 2.24
792 847 8.926710 CAATGAAACGACTTCTTTGATAGTACT 58.073 33.333 17.53 0.00 45.50 2.73
793 848 8.709646 ACAATGAAACGACTTCTTTGATAGTAC 58.290 33.333 23.76 0.00 45.50 2.73
794 849 8.827177 ACAATGAAACGACTTCTTTGATAGTA 57.173 30.769 23.76 0.00 45.50 1.82
795 850 7.359264 CGACAATGAAACGACTTCTTTGATAGT 60.359 37.037 23.76 11.16 45.50 2.12
796 851 6.950428 CGACAATGAAACGACTTCTTTGATAG 59.050 38.462 23.76 15.56 45.50 2.08
797 852 6.643360 TCGACAATGAAACGACTTCTTTGATA 59.357 34.615 23.76 13.18 45.50 2.15
798 853 5.465390 TCGACAATGAAACGACTTCTTTGAT 59.535 36.000 23.76 14.67 45.50 2.57
799 854 4.806775 TCGACAATGAAACGACTTCTTTGA 59.193 37.500 23.76 9.78 45.50 2.69
800 855 5.078153 TCGACAATGAAACGACTTCTTTG 57.922 39.130 19.26 19.26 46.87 2.77
801 856 5.465390 TCATCGACAATGAAACGACTTCTTT 59.535 36.000 0.00 0.00 41.49 2.52
802 857 4.988540 TCATCGACAATGAAACGACTTCTT 59.011 37.500 0.00 0.00 41.49 2.52
803 858 4.556233 TCATCGACAATGAAACGACTTCT 58.444 39.130 0.00 0.00 41.49 2.85
804 859 4.903638 TCATCGACAATGAAACGACTTC 57.096 40.909 0.00 0.00 41.49 3.01
813 868 1.127766 CCGCGTTTTCATCGACAATGA 59.872 47.619 4.92 0.00 42.76 2.57
814 869 1.523501 CCGCGTTTTCATCGACAATG 58.476 50.000 4.92 0.00 36.65 2.82
815 870 0.179200 GCCGCGTTTTCATCGACAAT 60.179 50.000 4.92 0.00 0.00 2.71
816 871 1.205568 GCCGCGTTTTCATCGACAA 59.794 52.632 4.92 0.00 0.00 3.18
817 872 2.673114 GGCCGCGTTTTCATCGACA 61.673 57.895 4.92 0.00 0.00 4.35
818 873 2.097728 GGCCGCGTTTTCATCGAC 59.902 61.111 4.92 0.00 0.00 4.20
819 874 2.047655 AGGCCGCGTTTTCATCGA 60.048 55.556 4.92 0.00 0.00 3.59
820 875 1.635663 AAGAGGCCGCGTTTTCATCG 61.636 55.000 4.92 0.00 0.00 3.84
821 876 1.365699 TAAGAGGCCGCGTTTTCATC 58.634 50.000 4.92 0.00 0.00 2.92
822 877 2.038387 ATAAGAGGCCGCGTTTTCAT 57.962 45.000 4.92 0.00 0.00 2.57
823 878 2.676632 TATAAGAGGCCGCGTTTTCA 57.323 45.000 4.92 0.00 0.00 2.69
824 879 3.192466 TCTTATAAGAGGCCGCGTTTTC 58.808 45.455 11.24 0.00 0.00 2.29
825 880 3.255969 TCTTATAAGAGGCCGCGTTTT 57.744 42.857 11.24 0.00 0.00 2.43
826 881 2.973694 TCTTATAAGAGGCCGCGTTT 57.026 45.000 11.24 0.00 0.00 3.60
827 882 2.973694 TTCTTATAAGAGGCCGCGTT 57.026 45.000 14.63 0.00 36.22 4.84
828 883 2.364324 TCATTCTTATAAGAGGCCGCGT 59.636 45.455 14.63 0.00 36.22 6.01
829 884 2.731976 GTCATTCTTATAAGAGGCCGCG 59.268 50.000 14.63 0.00 36.22 6.46
830 885 3.728845 TGTCATTCTTATAAGAGGCCGC 58.271 45.455 14.63 0.00 36.22 6.53
831 886 6.260936 ACATTTGTCATTCTTATAAGAGGCCG 59.739 38.462 14.63 5.90 36.22 6.13
832 887 7.573968 ACATTTGTCATTCTTATAAGAGGCC 57.426 36.000 14.63 0.00 36.22 5.19
840 895 9.547753 AGCGTAAGATACATTTGTCATTCTTAT 57.452 29.630 10.97 0.00 43.02 1.73
841 896 8.817100 CAGCGTAAGATACATTTGTCATTCTTA 58.183 33.333 6.60 6.60 43.02 2.10
912 967 3.192844 GTCGGGACAATTCTACAGTCTCA 59.807 47.826 0.00 0.00 32.31 3.27
971 1026 8.144862 AGGGGCATTCTTGTCATTTATTTTTA 57.855 30.769 0.00 0.00 0.00 1.52
976 1031 4.651045 GGAAGGGGCATTCTTGTCATTTAT 59.349 41.667 2.31 0.00 0.00 1.40
977 1032 4.023291 GGAAGGGGCATTCTTGTCATTTA 58.977 43.478 2.31 0.00 0.00 1.40
978 1033 2.833943 GGAAGGGGCATTCTTGTCATTT 59.166 45.455 2.31 0.00 0.00 2.32
979 1034 2.460669 GGAAGGGGCATTCTTGTCATT 58.539 47.619 2.31 0.00 0.00 2.57
980 1035 1.683011 CGGAAGGGGCATTCTTGTCAT 60.683 52.381 2.31 0.00 0.00 3.06
981 1036 0.322456 CGGAAGGGGCATTCTTGTCA 60.322 55.000 2.31 0.00 0.00 3.58
1271 1338 2.258748 GAACAGAGGCAGGTAGGGGC 62.259 65.000 0.00 0.00 0.00 5.80
1283 1350 7.690952 ACTACTAGTAGGAACAAGAACAGAG 57.309 40.000 29.05 5.83 37.49 3.35
1401 1477 3.687321 ATCCCATTCGCAGCACGCT 62.687 57.895 0.00 0.00 43.23 5.07
1458 1534 1.952296 CCTGGCAGCCAATACAGAATC 59.048 52.381 17.03 0.00 30.80 2.52
1460 1536 0.680921 GCCTGGCAGCCAATACAGAA 60.681 55.000 17.03 0.00 30.80 3.02
1523 1599 5.070180 TCCATGAAGAACAGAGATCTCATCC 59.930 44.000 24.39 10.30 0.00 3.51
1603 1685 8.397906 GCATACATACACACAGTTCAAATACAT 58.602 33.333 0.00 0.00 0.00 2.29
1618 1700 7.970061 ACAAGATTGAAACATGCATACATACAC 59.030 33.333 0.00 0.00 33.67 2.90
1644 1726 4.211125 CTGCTACTAGGACTCCAAGATCA 58.789 47.826 0.00 0.00 0.00 2.92
1647 1729 3.741245 ACTGCTACTAGGACTCCAAGA 57.259 47.619 0.00 0.00 0.00 3.02
1676 1758 2.100749 CTGGTGCCCCCGAAATTATTTC 59.899 50.000 7.56 7.56 35.15 2.17
1691 1773 3.300590 CGAAATTATTTCAACGCTGGTGC 59.699 43.478 16.57 0.00 39.63 5.01
1692 1774 3.851403 CCGAAATTATTTCAACGCTGGTG 59.149 43.478 16.57 0.00 39.63 4.17
1694 1776 3.434637 CCCGAAATTATTTCAACGCTGG 58.565 45.455 16.57 8.72 39.63 4.85
1695 1777 3.434637 CCCCGAAATTATTTCAACGCTG 58.565 45.455 16.57 0.79 39.63 5.18
1696 1778 2.425668 CCCCCGAAATTATTTCAACGCT 59.574 45.455 16.57 0.00 39.63 5.07
1697 1779 2.804647 CCCCCGAAATTATTTCAACGC 58.195 47.619 16.57 0.00 39.63 4.84
1698 1780 2.425668 AGCCCCCGAAATTATTTCAACG 59.574 45.455 16.57 4.70 39.63 4.10
1702 1784 1.607148 CCGAGCCCCCGAAATTATTTC 59.393 52.381 7.56 7.56 36.32 2.17
1703 1785 1.687563 CCGAGCCCCCGAAATTATTT 58.312 50.000 0.00 0.00 0.00 1.40
1704 1786 0.822121 GCCGAGCCCCCGAAATTATT 60.822 55.000 0.00 0.00 0.00 1.40
1705 1787 1.228154 GCCGAGCCCCCGAAATTAT 60.228 57.895 0.00 0.00 0.00 1.28
1706 1788 2.191109 GCCGAGCCCCCGAAATTA 59.809 61.111 0.00 0.00 0.00 1.40
1707 1789 3.728373 AGCCGAGCCCCCGAAATT 61.728 61.111 0.00 0.00 0.00 1.82
1708 1790 4.489771 CAGCCGAGCCCCCGAAAT 62.490 66.667 0.00 0.00 0.00 2.17
1734 1816 2.971598 GCAGACCTAGCTTGGGGCA 61.972 63.158 18.75 0.00 44.79 5.36
1826 1932 2.225491 TCGCAAAACTGACAGCCAATAC 59.775 45.455 1.25 0.00 0.00 1.89
1864 1970 4.080919 TGCTAAGCACATAGTGATGGTCTT 60.081 41.667 0.58 0.00 37.39 3.01
1884 1990 2.818921 AGAACAGAGATCTGAGGTGCT 58.181 47.619 16.52 0.00 46.59 4.40
1920 2026 5.160699 CGTAGCGTACATACAGTTCCTAA 57.839 43.478 0.00 0.00 0.00 2.69
1944 2050 8.532341 CACTACACAATACAGATCACGATTAAC 58.468 37.037 0.00 0.00 0.00 2.01
1956 2062 9.457110 CTTCTATCTTAGCACTACACAATACAG 57.543 37.037 0.00 0.00 0.00 2.74
1975 2081 4.712476 AGACACATCCAATGGCTTCTATC 58.288 43.478 0.00 0.00 27.74 2.08
2001 2107 0.388907 CAAAACAAGCTCATGGGCGG 60.389 55.000 12.97 11.43 37.29 6.13
2004 2110 2.821969 AGTAGCAAAACAAGCTCATGGG 59.178 45.455 0.00 0.00 42.32 4.00
2042 2151 1.953559 TGGACAAGAAGCACAGTCAC 58.046 50.000 0.00 0.00 32.79 3.67
2046 2155 1.462283 CGACATGGACAAGAAGCACAG 59.538 52.381 0.00 0.00 0.00 3.66
2054 2163 1.395954 CTGCACATCGACATGGACAAG 59.604 52.381 0.00 0.00 33.82 3.16
2100 2210 8.721133 AATGAAAAGAGGGTTTGGTTATAAGT 57.279 30.769 0.00 0.00 0.00 2.24
2114 2224 3.255149 AGCTGCACAGAAATGAAAAGAGG 59.745 43.478 1.02 0.00 0.00 3.69
2117 2227 5.522456 TGTAAGCTGCACAGAAATGAAAAG 58.478 37.500 1.02 0.00 0.00 2.27
2151 2261 7.383029 GCTATCTCAGAGAGAACATTGAGAATG 59.617 40.741 6.24 0.00 46.31 2.67
2255 2365 2.107041 AAAGTGCATCGACGGTCCCA 62.107 55.000 1.91 0.00 0.00 4.37
2266 2376 4.037446 TCTTTGCTTCCGTTAAAAGTGCAT 59.963 37.500 0.00 0.00 32.64 3.96
2378 2488 7.983484 GGGAATCATTCAGAATGTAGCAAAAAT 59.017 33.333 20.49 3.91 39.87 1.82
2757 3157 3.821033 GACTGACCACTGCTACCAATTTT 59.179 43.478 0.00 0.00 0.00 1.82
2821 3221 9.343539 GGAACTTGGAGCATACTAATTAGATTT 57.656 33.333 19.38 0.00 0.00 2.17
2921 3322 8.257306 GCATTACTAAAATCAGGGATTTTTCCA 58.743 33.333 18.66 4.39 46.07 3.53
2924 3325 9.435688 GTTGCATTACTAAAATCAGGGATTTTT 57.564 29.630 18.66 7.70 46.07 1.94
3017 3418 8.626526 AGTTGGTAAACAAACCTAACATAACAG 58.373 33.333 0.00 0.00 41.58 3.16
3040 3441 3.494924 GCCCAATCTGCCAAAAAGAAGTT 60.495 43.478 0.00 0.00 0.00 2.66
3182 3583 7.217200 TGTAGGATTGATTCAAGGTATGTAGC 58.783 38.462 5.21 0.00 0.00 3.58
3315 3717 5.234543 GCTCGAAACTGTAGAGAAAACAAGT 59.765 40.000 10.65 0.00 34.13 3.16
3419 3821 8.877864 AGAGTATACATCAGATAAAGAGAGGG 57.122 38.462 5.50 0.00 0.00 4.30
3476 3878 1.260538 ACTGAGATTGCAGCCTCCGA 61.261 55.000 12.88 0.00 39.51 4.55
3478 3880 2.284190 GTAACTGAGATTGCAGCCTCC 58.716 52.381 12.88 0.00 39.51 4.30
3651 4061 6.544928 TCTCAAATCAGCTATGTACTGGAA 57.455 37.500 0.00 0.00 35.78 3.53
3652 4062 6.519382 CATCTCAAATCAGCTATGTACTGGA 58.481 40.000 0.00 0.00 35.78 3.86
3653 4063 5.178996 GCATCTCAAATCAGCTATGTACTGG 59.821 44.000 0.00 0.00 35.78 4.00
3654 4064 5.990386 AGCATCTCAAATCAGCTATGTACTG 59.010 40.000 0.00 0.00 33.06 2.74
3655 4065 5.990386 CAGCATCTCAAATCAGCTATGTACT 59.010 40.000 0.00 0.00 33.59 2.73
3656 4066 5.333952 GCAGCATCTCAAATCAGCTATGTAC 60.334 44.000 0.00 0.00 33.59 2.90
3657 4067 4.753610 GCAGCATCTCAAATCAGCTATGTA 59.246 41.667 0.00 0.00 33.59 2.29
3658 4068 3.564644 GCAGCATCTCAAATCAGCTATGT 59.435 43.478 0.00 0.00 33.59 2.29
3829 4239 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
3830 4240 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
3831 4241 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
3832 4242 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3833 4243 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3834 4244 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3835 4245 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3836 4246 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3837 4247 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3838 4248 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3839 4249 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3840 4250 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
3841 4251 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
3842 4252 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
3843 4253 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
3850 4260 9.918630 CTTCTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
3888 4298 9.845214 AGGGGATGTATCTAGATGTATTTTAGT 57.155 33.333 15.79 0.00 0.00 2.24
3895 4305 9.268282 GGATTAAAGGGGATGTATCTAGATGTA 57.732 37.037 15.79 4.44 0.00 2.29
3896 4306 7.739444 TGGATTAAAGGGGATGTATCTAGATGT 59.261 37.037 15.79 1.25 0.00 3.06
3897 4307 8.150827 TGGATTAAAGGGGATGTATCTAGATG 57.849 38.462 15.79 0.00 0.00 2.90
3898 4308 8.940012 ATGGATTAAAGGGGATGTATCTAGAT 57.060 34.615 10.73 10.73 0.00 1.98
3899 4309 8.757307 AATGGATTAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
3900 4310 9.813826 AAAATGGATTAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
3901 4311 9.586732 CAAAATGGATTAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
3902 4312 8.288812 TCAAAATGGATTAAAGGGGATGTATCT 58.711 33.333 0.00 0.00 0.00 1.98
3903 4313 8.477419 TCAAAATGGATTAAAGGGGATGTATC 57.523 34.615 0.00 0.00 0.00 2.24
3904 4314 8.873144 CATCAAAATGGATTAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
3905 4315 8.064389 TCATCAAAATGGATTAAAGGGGATGTA 58.936 33.333 0.00 0.00 33.42 2.29
3906 4316 6.902416 TCATCAAAATGGATTAAAGGGGATGT 59.098 34.615 0.00 0.00 33.42 3.06
3907 4317 7.147689 TGTCATCAAAATGGATTAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
3908 4318 6.902416 TGTCATCAAAATGGATTAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
3909 4319 6.259893 TGTCATCAAAATGGATTAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
3910 4320 6.543430 TGTCATCAAAATGGATTAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
3911 4321 7.614494 AGTTGTCATCAAAATGGATTAAAGGG 58.386 34.615 0.00 0.00 35.20 3.95
3917 4327 7.975616 CGGAAATAGTTGTCATCAAAATGGATT 59.024 33.333 0.00 0.00 35.20 3.01
3918 4328 7.416664 CCGGAAATAGTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 35.20 3.41
3919 4329 6.127758 CCGGAAATAGTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 35.20 3.41
3920 4330 6.035843 CCGGAAATAGTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 35.20 3.16
3921 4331 6.747280 GTCCGGAAATAGTTGTCATCAAAATG 59.253 38.462 5.23 0.00 35.20 2.32
3922 4332 6.403200 CGTCCGGAAATAGTTGTCATCAAAAT 60.403 38.462 5.23 0.00 35.20 1.82
3923 4333 5.106869 CGTCCGGAAATAGTTGTCATCAAAA 60.107 40.000 5.23 0.00 35.20 2.44
3924 4334 4.390603 CGTCCGGAAATAGTTGTCATCAAA 59.609 41.667 5.23 0.00 35.20 2.69
3925 4335 3.930229 CGTCCGGAAATAGTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
3926 4336 3.517602 CGTCCGGAAATAGTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
3927 4337 2.864343 CCGTCCGGAAATAGTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
3928 4338 2.498481 TCCGTCCGGAAATAGTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
3929 4339 1.894466 TCCGTCCGGAAATAGTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
3930 4340 2.537401 CTCCGTCCGGAAATAGTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
3931 4341 1.206371 CCTCCGTCCGGAAATAGTTGT 59.794 52.381 5.23 0.00 44.66 3.32
3932 4342 1.472728 CCCTCCGTCCGGAAATAGTTG 60.473 57.143 5.23 0.00 44.66 3.16
3933 4343 0.828677 CCCTCCGTCCGGAAATAGTT 59.171 55.000 5.23 0.00 44.66 2.24
3934 4344 0.032813 TCCCTCCGTCCGGAAATAGT 60.033 55.000 5.23 0.00 44.66 2.12
3935 4345 0.674534 CTCCCTCCGTCCGGAAATAG 59.325 60.000 5.23 3.15 44.66 1.73
3936 4346 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
3937 4347 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
3938 4348 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
3939 4349 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
3940 4350 0.982852 TACTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
3941 4351 0.110104 ATACTACTCCCTCCGTCCGG 59.890 60.000 0.00 0.00 0.00 5.14
3942 4352 1.202734 TCATACTACTCCCTCCGTCCG 60.203 57.143 0.00 0.00 0.00 4.79
3943 4353 2.158638 ACTCATACTACTCCCTCCGTCC 60.159 54.545 0.00 0.00 0.00 4.79
3944 4354 3.211718 ACTCATACTACTCCCTCCGTC 57.788 52.381 0.00 0.00 0.00 4.79
3945 4355 4.785346 TTACTCATACTACTCCCTCCGT 57.215 45.455 0.00 0.00 0.00 4.69
3946 4356 6.271566 GTTTTTACTCATACTACTCCCTCCG 58.728 44.000 0.00 0.00 0.00 4.63
3947 4357 6.383436 AGGTTTTTACTCATACTACTCCCTCC 59.617 42.308 0.00 0.00 0.00 4.30
3948 4358 7.421087 AGGTTTTTACTCATACTACTCCCTC 57.579 40.000 0.00 0.00 0.00 4.30
3949 4359 7.809880 AAGGTTTTTACTCATACTACTCCCT 57.190 36.000 0.00 0.00 0.00 4.20
3950 4360 7.336176 CCAAAGGTTTTTACTCATACTACTCCC 59.664 40.741 0.00 0.00 0.00 4.30
3951 4361 8.098912 TCCAAAGGTTTTTACTCATACTACTCC 58.901 37.037 0.00 0.00 0.00 3.85
3952 4362 8.933807 GTCCAAAGGTTTTTACTCATACTACTC 58.066 37.037 0.00 0.00 0.00 2.59
3953 4363 8.657712 AGTCCAAAGGTTTTTACTCATACTACT 58.342 33.333 0.00 0.00 0.00 2.57
3954 4364 8.843885 AGTCCAAAGGTTTTTACTCATACTAC 57.156 34.615 0.00 0.00 0.00 2.73
3955 4365 9.933723 GTAGTCCAAAGGTTTTTACTCATACTA 57.066 33.333 0.00 0.00 0.00 1.82
3956 4366 8.434392 TGTAGTCCAAAGGTTTTTACTCATACT 58.566 33.333 0.00 0.00 0.00 2.12
4115 4526 3.476295 TTAGCGCAATGAGCAAAGAAG 57.524 42.857 11.47 0.00 46.13 2.85
4130 4541 5.879237 TCAGCCATAGAAACAATTTTAGCG 58.121 37.500 0.00 0.00 0.00 4.26
4192 4616 3.513680 TGCCAATTCAGATGCATGAAC 57.486 42.857 2.46 0.00 41.76 3.18
4265 4769 0.804364 CATGAACCGGTGATGTGTGG 59.196 55.000 8.52 0.00 0.00 4.17
4268 4772 2.813754 AGAAACATGAACCGGTGATGTG 59.186 45.455 25.64 17.08 30.69 3.21
4269 4773 3.140325 AGAAACATGAACCGGTGATGT 57.860 42.857 21.46 21.46 31.54 3.06
4385 4893 2.263895 TGGGTACTGGTAGCTTGGAT 57.736 50.000 9.34 0.00 34.26 3.41
4689 5197 6.943718 AGGGAGTAGTATTTAGCTGCTACTAG 59.056 42.308 9.27 0.00 42.46 2.57
4708 5216 5.488919 TCATCTATTTTGGAACAGAGGGAGT 59.511 40.000 0.00 0.00 42.39 3.85
4709 5217 5.819901 GTCATCTATTTTGGAACAGAGGGAG 59.180 44.000 0.00 0.00 42.39 4.30
4710 5218 5.488919 AGTCATCTATTTTGGAACAGAGGGA 59.511 40.000 0.00 0.00 42.39 4.20
4711 5219 5.749462 AGTCATCTATTTTGGAACAGAGGG 58.251 41.667 0.00 0.00 42.39 4.30
4712 5220 6.409704 TGAGTCATCTATTTTGGAACAGAGG 58.590 40.000 0.00 0.00 42.39 3.69
4713 5221 7.605691 AGTTGAGTCATCTATTTTGGAACAGAG 59.394 37.037 1.70 0.00 42.39 3.35
4714 5222 7.453393 AGTTGAGTCATCTATTTTGGAACAGA 58.547 34.615 1.70 0.00 42.39 3.41
4715 5223 7.678947 AGTTGAGTCATCTATTTTGGAACAG 57.321 36.000 1.70 0.00 42.39 3.16
4716 5224 8.352201 CAAAGTTGAGTCATCTATTTTGGAACA 58.648 33.333 4.14 0.00 35.65 3.18
4717 5225 8.352942 ACAAAGTTGAGTCATCTATTTTGGAAC 58.647 33.333 14.35 0.00 40.00 3.62
4718 5226 8.463930 ACAAAGTTGAGTCATCTATTTTGGAA 57.536 30.769 14.35 0.00 40.00 3.53
4719 5227 8.999431 GTACAAAGTTGAGTCATCTATTTTGGA 58.001 33.333 14.35 6.88 40.00 3.53
4720 5228 9.003658 AGTACAAAGTTGAGTCATCTATTTTGG 57.996 33.333 14.35 0.00 40.00 3.28
4753 5261 9.739276 TCCAAAATAGATGACTCAACTTTGTAT 57.261 29.630 0.00 0.00 0.00 2.29
4754 5262 9.567776 TTCCAAAATAGATGACTCAACTTTGTA 57.432 29.630 0.00 0.00 0.00 2.41
4755 5263 8.352942 GTTCCAAAATAGATGACTCAACTTTGT 58.647 33.333 0.00 0.00 0.00 2.83
4756 5264 8.352201 TGTTCCAAAATAGATGACTCAACTTTG 58.648 33.333 0.00 0.00 0.00 2.77
4757 5265 8.463930 TGTTCCAAAATAGATGACTCAACTTT 57.536 30.769 0.00 0.00 0.00 2.66
4758 5266 7.939039 TCTGTTCCAAAATAGATGACTCAACTT 59.061 33.333 0.00 0.00 28.72 2.66
4759 5267 7.453393 TCTGTTCCAAAATAGATGACTCAACT 58.547 34.615 0.00 0.00 28.72 3.16
4760 5268 7.148340 CCTCTGTTCCAAAATAGATGACTCAAC 60.148 40.741 0.00 0.00 32.88 3.18
4761 5269 6.881065 CCTCTGTTCCAAAATAGATGACTCAA 59.119 38.462 0.00 0.00 32.88 3.02
4762 5270 6.409704 CCTCTGTTCCAAAATAGATGACTCA 58.590 40.000 0.00 0.00 32.88 3.41
4763 5271 5.819901 CCCTCTGTTCCAAAATAGATGACTC 59.180 44.000 0.00 0.00 32.88 3.36
4764 5272 5.488919 TCCCTCTGTTCCAAAATAGATGACT 59.511 40.000 0.00 0.00 32.88 3.41
4765 5273 5.745227 TCCCTCTGTTCCAAAATAGATGAC 58.255 41.667 0.00 0.00 32.88 3.06
4766 5274 5.488919 ACTCCCTCTGTTCCAAAATAGATGA 59.511 40.000 0.00 0.00 32.88 2.92
4767 5275 5.749462 ACTCCCTCTGTTCCAAAATAGATG 58.251 41.667 0.00 0.00 32.88 2.90
4768 5276 6.100424 CCTACTCCCTCTGTTCCAAAATAGAT 59.900 42.308 0.00 0.00 32.88 1.98
4769 5277 5.425539 CCTACTCCCTCTGTTCCAAAATAGA 59.574 44.000 0.00 0.00 32.42 1.98
4770 5278 5.189934 ACCTACTCCCTCTGTTCCAAAATAG 59.810 44.000 0.00 0.00 0.00 1.73
4771 5279 5.045869 CACCTACTCCCTCTGTTCCAAAATA 60.046 44.000 0.00 0.00 0.00 1.40
4772 5280 3.916989 ACCTACTCCCTCTGTTCCAAAAT 59.083 43.478 0.00 0.00 0.00 1.82
4773 5281 3.072476 CACCTACTCCCTCTGTTCCAAAA 59.928 47.826 0.00 0.00 0.00 2.44
4774 5282 2.637872 CACCTACTCCCTCTGTTCCAAA 59.362 50.000 0.00 0.00 0.00 3.28
4775 5283 2.257207 CACCTACTCCCTCTGTTCCAA 58.743 52.381 0.00 0.00 0.00 3.53
4776 5284 1.938585 CACCTACTCCCTCTGTTCCA 58.061 55.000 0.00 0.00 0.00 3.53
4777 5285 0.537653 GCACCTACTCCCTCTGTTCC 59.462 60.000 0.00 0.00 0.00 3.62
4778 5286 1.478916 GAGCACCTACTCCCTCTGTTC 59.521 57.143 0.00 0.00 0.00 3.18
4779 5287 1.203187 TGAGCACCTACTCCCTCTGTT 60.203 52.381 0.00 0.00 35.72 3.16
4780 5288 0.409876 TGAGCACCTACTCCCTCTGT 59.590 55.000 0.00 0.00 35.72 3.41
4781 5289 1.686052 GATGAGCACCTACTCCCTCTG 59.314 57.143 0.00 0.00 35.72 3.35
4782 5290 1.752436 CGATGAGCACCTACTCCCTCT 60.752 57.143 0.00 0.00 35.72 3.69
4783 5291 0.671251 CGATGAGCACCTACTCCCTC 59.329 60.000 0.00 0.00 35.72 4.30
4784 5292 0.033011 ACGATGAGCACCTACTCCCT 60.033 55.000 0.00 0.00 35.72 4.20
4785 5293 0.824759 AACGATGAGCACCTACTCCC 59.175 55.000 0.00 0.00 35.72 4.30
4786 5294 1.202428 GGAACGATGAGCACCTACTCC 60.202 57.143 0.00 0.00 35.72 3.85
4787 5295 1.202428 GGGAACGATGAGCACCTACTC 60.202 57.143 0.00 0.00 37.19 2.59
4788 5296 0.824759 GGGAACGATGAGCACCTACT 59.175 55.000 0.00 0.00 0.00 2.57
4789 5297 0.824759 AGGGAACGATGAGCACCTAC 59.175 55.000 0.00 0.00 0.00 3.18
4790 5298 0.824109 CAGGGAACGATGAGCACCTA 59.176 55.000 0.00 0.00 0.00 3.08
4791 5299 1.194781 ACAGGGAACGATGAGCACCT 61.195 55.000 0.00 0.00 0.00 4.00
4964 5481 1.204941 AGGTCACACGAGCCAAGATAC 59.795 52.381 0.00 0.00 40.69 2.24
4968 5485 0.532862 ACAAGGTCACACGAGCCAAG 60.533 55.000 0.00 0.00 40.69 3.61
4973 5490 1.887198 AGGACTACAAGGTCACACGAG 59.113 52.381 0.00 0.00 37.91 4.18
5025 5542 1.748493 TGCTTCTTTTTGGTCTTGCGT 59.252 42.857 0.00 0.00 0.00 5.24
5094 5611 1.081892 CGAGTGCACAAGAATGAGGG 58.918 55.000 21.04 0.00 0.00 4.30
5315 6106 9.202273 GAAATACGCTCATGAAATAAGAGATCT 57.798 33.333 0.00 0.00 0.00 2.75
5329 6120 4.639334 AGCATCTCATGAAATACGCTCAT 58.361 39.130 0.00 0.00 33.73 2.90
5332 6123 3.003068 GCAAGCATCTCATGAAATACGCT 59.997 43.478 0.00 0.00 0.00 5.07
5336 6127 3.807553 TCCGCAAGCATCTCATGAAATA 58.192 40.909 0.00 0.00 0.00 1.40
5337 6128 2.617308 CTCCGCAAGCATCTCATGAAAT 59.383 45.455 0.00 0.00 0.00 2.17
5340 6131 0.826062 TCTCCGCAAGCATCTCATGA 59.174 50.000 0.00 0.00 0.00 3.07
5342 6133 1.068895 CTCTCTCCGCAAGCATCTCAT 59.931 52.381 0.00 0.00 0.00 2.90
5344 6135 0.743688 TCTCTCTCCGCAAGCATCTC 59.256 55.000 0.00 0.00 0.00 2.75
5414 6206 3.339141 GCCTTCGAATTTCAGAAGAGGT 58.661 45.455 21.74 0.00 44.76 3.85
5416 6208 2.680339 GGGCCTTCGAATTTCAGAAGAG 59.320 50.000 21.74 15.94 44.76 2.85
5427 6219 4.830600 ACTAAATTTTTCAGGGCCTTCGAA 59.169 37.500 1.32 1.95 0.00 3.71
5435 6227 5.292589 GCATGCATGACTAAATTTTTCAGGG 59.707 40.000 30.64 0.00 0.00 4.45
5440 6232 8.526147 ACTAAGAGCATGCATGACTAAATTTTT 58.474 29.630 30.64 12.64 0.00 1.94
5483 6275 2.907634 TCTACGACACAAAAACTGCCA 58.092 42.857 0.00 0.00 0.00 4.92
5545 6337 3.493767 ACTTTTCCAAGACTCCAGGTC 57.506 47.619 0.00 0.00 44.80 3.85
5546 6338 3.953542 AACTTTTCCAAGACTCCAGGT 57.046 42.857 0.00 0.00 33.72 4.00
5547 6339 4.327680 CCTAACTTTTCCAAGACTCCAGG 58.672 47.826 0.00 0.00 33.72 4.45
5548 6340 3.753797 GCCTAACTTTTCCAAGACTCCAG 59.246 47.826 0.00 0.00 33.72 3.86
5549 6341 3.751518 GCCTAACTTTTCCAAGACTCCA 58.248 45.455 0.00 0.00 33.72 3.86
5550 6342 2.742589 CGCCTAACTTTTCCAAGACTCC 59.257 50.000 0.00 0.00 33.72 3.85
5551 6343 3.186613 CACGCCTAACTTTTCCAAGACTC 59.813 47.826 0.00 0.00 33.72 3.36
5624 6417 5.566627 GCTCTCCCTCTTCTACATAAGATGC 60.567 48.000 0.00 0.00 35.04 3.91
5648 6446 1.215244 CTCATACACCAGCAGCATCG 58.785 55.000 0.00 0.00 0.00 3.84
5724 6523 6.318900 TCAGTTTTCCCTTTCTTCAGACTTTC 59.681 38.462 0.00 0.00 0.00 2.62
5752 8115 4.670347 GAGCTACGACGACCTAAAAGATT 58.330 43.478 0.00 0.00 0.00 2.40
5819 8321 6.742109 CATATTCTTATGCCAACCAGAAAGG 58.258 40.000 0.00 0.00 45.67 3.11
5836 8338 3.506455 ACGTGCTATACTCCGCATATTCT 59.494 43.478 0.00 0.00 38.56 2.40
5854 8527 8.851416 CAACAATCTAGTAAAAGACTCTACGTG 58.149 37.037 0.00 0.00 39.81 4.49
5868 8541 7.801893 TTTCCTCCCTTACAACAATCTAGTA 57.198 36.000 0.00 0.00 0.00 1.82
5869 8542 6.697641 TTTCCTCCCTTACAACAATCTAGT 57.302 37.500 0.00 0.00 0.00 2.57
5870 8543 7.119846 CACTTTTCCTCCCTTACAACAATCTAG 59.880 40.741 0.00 0.00 0.00 2.43
5961 8634 5.068723 ACTTGCTAATACTACCATACGTGCT 59.931 40.000 0.00 0.00 0.00 4.40
5962 8635 5.175126 CACTTGCTAATACTACCATACGTGC 59.825 44.000 0.00 0.00 0.00 5.34
5963 8636 6.417044 GTCACTTGCTAATACTACCATACGTG 59.583 42.308 0.00 0.00 0.00 4.49
5964 8637 6.095860 TGTCACTTGCTAATACTACCATACGT 59.904 38.462 0.00 0.00 0.00 3.57
5965 8638 6.500910 TGTCACTTGCTAATACTACCATACG 58.499 40.000 0.00 0.00 0.00 3.06
5967 8640 7.560262 AGACTGTCACTTGCTAATACTACCATA 59.440 37.037 10.88 0.00 0.00 2.74
5968 8641 6.381420 AGACTGTCACTTGCTAATACTACCAT 59.619 38.462 10.88 0.00 0.00 3.55
6054 8727 7.998964 CCCTTCTTGATTGGGTACACTATTTAT 59.001 37.037 0.00 0.00 36.32 1.40
6122 8795 3.252701 CACTCTGGCATGCTTCATATTCC 59.747 47.826 18.92 0.00 0.00 3.01
6135 8808 5.820404 AGATGATGATATTCACTCTGGCA 57.180 39.130 0.00 0.00 0.00 4.92
6168 8841 3.360533 CGTCTGTACAGCATAACTACGG 58.639 50.000 18.45 2.79 0.00 4.02
6171 8844 5.395682 AAACCGTCTGTACAGCATAACTA 57.604 39.130 18.45 0.00 0.00 2.24
6209 8882 7.230108 TCTCTCACTGAAATGCTTCAAAGATTT 59.770 33.333 0.00 0.00 41.05 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.