Multiple sequence alignment - TraesCS6A01G143000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G143000 chr6A 100.000 3059 0 0 1 3059 119337130 119334072 0.000000e+00 5650
1 TraesCS6A01G143000 chr6A 81.295 417 60 10 360 763 184710744 184711155 3.800000e-84 322
2 TraesCS6A01G143000 chr6A 100.000 62 0 0 2998 3059 605205091 605205030 6.930000e-22 115
3 TraesCS6A01G143000 chr3D 91.838 1997 146 6 357 2337 508191449 508189454 0.000000e+00 2769
4 TraesCS6A01G143000 chr3D 87.045 440 42 12 2578 3002 543888894 543889333 1.650000e-132 483
5 TraesCS6A01G143000 chr3D 93.532 201 12 1 1 200 94822966 94823166 6.410000e-77 298
6 TraesCS6A01G143000 chr4D 91.771 1993 141 8 359 2335 471493443 471495428 0.000000e+00 2750
7 TraesCS6A01G143000 chr4D 79.851 670 96 25 2342 3002 284561065 284561704 1.290000e-123 453
8 TraesCS6A01G143000 chr2D 91.242 2021 130 14 357 2336 33330206 33328192 0.000000e+00 2708
9 TraesCS6A01G143000 chr6B 91.241 1998 158 6 357 2337 184169708 184171705 0.000000e+00 2704
10 TraesCS6A01G143000 chr6B 83.824 204 17 7 2148 2337 694494090 694494291 2.420000e-41 180
11 TraesCS6A01G143000 chr7D 90.467 2014 141 17 357 2338 489163153 489161159 0.000000e+00 2608
12 TraesCS6A01G143000 chr7D 91.817 611 38 2 357 955 425723384 425723994 0.000000e+00 841
13 TraesCS6A01G143000 chr7D 96.939 196 6 0 357 552 33807181 33807376 2.270000e-86 329
14 TraesCS6A01G143000 chr7D 93.532 201 12 1 1 200 2216538 2216738 6.410000e-77 298
15 TraesCS6A01G143000 chr1B 89.621 2004 181 18 357 2337 11630728 11632727 0.000000e+00 2523
16 TraesCS6A01G143000 chr1B 93.532 201 12 1 1 200 650460628 650460828 6.410000e-77 298
17 TraesCS6A01G143000 chr5B 90.619 1631 139 3 458 2075 429803177 429804806 0.000000e+00 2152
18 TraesCS6A01G143000 chr5B 93.532 201 12 1 1 200 322129706 322129506 6.410000e-77 298
19 TraesCS6A01G143000 chr5B 93.532 201 12 1 1 200 514272352 514272552 6.410000e-77 298
20 TraesCS6A01G143000 chr5B 88.261 230 25 2 376 604 419244392 419244620 1.080000e-69 274
21 TraesCS6A01G143000 chr5B 96.970 66 0 2 2995 3059 82119863 82119927 3.220000e-20 110
22 TraesCS6A01G143000 chr5B 98.246 57 1 0 3003 3059 420501487 420501431 1.940000e-17 100
23 TraesCS6A01G143000 chr5D 92.045 1496 113 6 849 2340 376685282 376686775 0.000000e+00 2098
24 TraesCS6A01G143000 chr5D 94.030 201 11 1 1 200 76233378 76233578 1.380000e-78 303
25 TraesCS6A01G143000 chr6D 93.589 1201 65 4 1145 2337 461326128 461324932 0.000000e+00 1781
26 TraesCS6A01G143000 chr6D 91.931 1041 76 5 1304 2337 428443242 428444281 0.000000e+00 1450
27 TraesCS6A01G143000 chr2B 90.675 1244 103 2 357 1587 503979090 503977847 0.000000e+00 1642
28 TraesCS6A01G143000 chr2A 90.930 430 30 6 2579 3002 617571935 617572361 1.230000e-158 569
29 TraesCS6A01G143000 chr2A 86.621 441 43 11 2578 3002 755782684 755783124 9.930000e-130 473
30 TraesCS6A01G143000 chr7B 82.759 667 76 25 2342 3002 179421790 179421157 2.660000e-155 558
31 TraesCS6A01G143000 chr7B 82.309 667 79 25 2342 3002 179397886 179397253 2.680000e-150 542
32 TraesCS6A01G143000 chr7B 96.923 65 2 0 2995 3059 122887686 122887750 3.220000e-20 110
33 TraesCS6A01G143000 chr7A 80.966 683 75 31 2342 3002 484173049 484172400 9.860000e-135 490
34 TraesCS6A01G143000 chr5A 86.621 441 43 12 2578 3002 503987831 503988271 9.930000e-130 473
35 TraesCS6A01G143000 chr5A 97.059 68 1 1 2992 3059 245946472 245946406 2.490000e-21 113
36 TraesCS6A01G143000 chr5A 96.970 66 1 1 2994 3059 374757328 374757264 3.220000e-20 110
37 TraesCS6A01G143000 chr1A 86.005 443 44 13 2578 3002 347931359 347930917 2.780000e-125 459
38 TraesCS6A01G143000 chr3B 94.030 201 11 1 1 200 720179443 720179243 1.380000e-78 303
39 TraesCS6A01G143000 chr1D 93.532 201 11 2 1 200 18217556 18217357 6.410000e-77 298
40 TraesCS6A01G143000 chr1D 93.532 201 12 1 1 200 41770166 41770366 6.410000e-77 298
41 TraesCS6A01G143000 chr4A 95.714 70 1 2 2990 3059 144786728 144786795 8.970000e-21 111
42 TraesCS6A01G143000 chr4A 98.413 63 1 0 2997 3059 473933582 473933520 8.970000e-21 111
43 TraesCS6A01G143000 chr4A 90.361 83 6 2 2977 3059 142862848 142862928 1.160000e-19 108


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G143000 chr6A 119334072 119337130 3058 True 5650 5650 100.000 1 3059 1 chr6A.!!$R1 3058
1 TraesCS6A01G143000 chr3D 508189454 508191449 1995 True 2769 2769 91.838 357 2337 1 chr3D.!!$R1 1980
2 TraesCS6A01G143000 chr4D 471493443 471495428 1985 False 2750 2750 91.771 359 2335 1 chr4D.!!$F2 1976
3 TraesCS6A01G143000 chr4D 284561065 284561704 639 False 453 453 79.851 2342 3002 1 chr4D.!!$F1 660
4 TraesCS6A01G143000 chr2D 33328192 33330206 2014 True 2708 2708 91.242 357 2336 1 chr2D.!!$R1 1979
5 TraesCS6A01G143000 chr6B 184169708 184171705 1997 False 2704 2704 91.241 357 2337 1 chr6B.!!$F1 1980
6 TraesCS6A01G143000 chr7D 489161159 489163153 1994 True 2608 2608 90.467 357 2338 1 chr7D.!!$R1 1981
7 TraesCS6A01G143000 chr7D 425723384 425723994 610 False 841 841 91.817 357 955 1 chr7D.!!$F3 598
8 TraesCS6A01G143000 chr1B 11630728 11632727 1999 False 2523 2523 89.621 357 2337 1 chr1B.!!$F1 1980
9 TraesCS6A01G143000 chr5B 429803177 429804806 1629 False 2152 2152 90.619 458 2075 1 chr5B.!!$F3 1617
10 TraesCS6A01G143000 chr5D 376685282 376686775 1493 False 2098 2098 92.045 849 2340 1 chr5D.!!$F2 1491
11 TraesCS6A01G143000 chr6D 461324932 461326128 1196 True 1781 1781 93.589 1145 2337 1 chr6D.!!$R1 1192
12 TraesCS6A01G143000 chr6D 428443242 428444281 1039 False 1450 1450 91.931 1304 2337 1 chr6D.!!$F1 1033
13 TraesCS6A01G143000 chr2B 503977847 503979090 1243 True 1642 1642 90.675 357 1587 1 chr2B.!!$R1 1230
14 TraesCS6A01G143000 chr7B 179421157 179421790 633 True 558 558 82.759 2342 3002 1 chr7B.!!$R2 660
15 TraesCS6A01G143000 chr7B 179397253 179397886 633 True 542 542 82.309 2342 3002 1 chr7B.!!$R1 660
16 TraesCS6A01G143000 chr7A 484172400 484173049 649 True 490 490 80.966 2342 3002 1 chr7A.!!$R1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.032952 TTGTTGCTTAGACGACGGCT 59.967 50.0 8.97 8.97 0.00 5.52 F
232 233 0.103026 CGGAGATGGAGAACATGCGA 59.897 55.0 0.00 0.00 40.72 5.10 F
1521 1592 0.250234 TCCCATCGAAGGTGCTTCAG 59.750 55.0 5.87 0.00 40.17 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1419 1490 0.250467 ACAAGAGCGGCACATCAGTT 60.250 50.0 1.45 0.0 0.00 3.16 R
1574 1645 0.321919 GGACTGCAACATGAGCTCCA 60.322 55.0 12.15 0.0 0.00 3.86 R
3002 3114 0.394488 TTCTGCAACGTTCCCCAACA 60.394 50.0 0.00 0.0 32.14 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.458653 CAAGTGGCAAGGTTGGGG 58.541 61.111 0.00 0.00 0.00 4.96
18 19 1.457455 CAAGTGGCAAGGTTGGGGT 60.457 57.895 0.00 0.00 0.00 4.95
19 20 1.152546 AAGTGGCAAGGTTGGGGTC 60.153 57.895 0.00 0.00 0.00 4.46
20 21 1.655114 AAGTGGCAAGGTTGGGGTCT 61.655 55.000 0.00 0.00 0.00 3.85
21 22 1.603739 GTGGCAAGGTTGGGGTCTC 60.604 63.158 0.00 0.00 0.00 3.36
22 23 2.081787 TGGCAAGGTTGGGGTCTCA 61.082 57.895 0.00 0.00 0.00 3.27
23 24 1.303643 GGCAAGGTTGGGGTCTCAG 60.304 63.158 0.00 0.00 0.00 3.35
24 25 1.303643 GCAAGGTTGGGGTCTCAGG 60.304 63.158 0.00 0.00 0.00 3.86
25 26 2.069165 GCAAGGTTGGGGTCTCAGGT 62.069 60.000 0.00 0.00 0.00 4.00
26 27 0.036875 CAAGGTTGGGGTCTCAGGTC 59.963 60.000 0.00 0.00 0.00 3.85
27 28 0.104409 AAGGTTGGGGTCTCAGGTCT 60.104 55.000 0.00 0.00 0.00 3.85
28 29 0.104409 AGGTTGGGGTCTCAGGTCTT 60.104 55.000 0.00 0.00 0.00 3.01
29 30 1.151413 AGGTTGGGGTCTCAGGTCTTA 59.849 52.381 0.00 0.00 0.00 2.10
30 31 1.555533 GGTTGGGGTCTCAGGTCTTAG 59.444 57.143 0.00 0.00 0.00 2.18
31 32 2.537143 GTTGGGGTCTCAGGTCTTAGA 58.463 52.381 0.00 0.00 0.00 2.10
32 33 3.108376 GTTGGGGTCTCAGGTCTTAGAT 58.892 50.000 0.00 0.00 0.00 1.98
33 34 2.752030 TGGGGTCTCAGGTCTTAGATG 58.248 52.381 0.00 0.00 0.00 2.90
34 35 2.044492 TGGGGTCTCAGGTCTTAGATGT 59.956 50.000 0.00 0.00 0.00 3.06
35 36 3.108376 GGGGTCTCAGGTCTTAGATGTT 58.892 50.000 0.00 0.00 0.00 2.71
36 37 4.264668 TGGGGTCTCAGGTCTTAGATGTTA 60.265 45.833 0.00 0.00 0.00 2.41
37 38 4.342665 GGGGTCTCAGGTCTTAGATGTTAG 59.657 50.000 0.00 0.00 0.00 2.34
38 39 4.342665 GGGTCTCAGGTCTTAGATGTTAGG 59.657 50.000 0.00 0.00 0.00 2.69
39 40 4.202172 GGTCTCAGGTCTTAGATGTTAGGC 60.202 50.000 0.00 0.00 0.00 3.93
40 41 4.647399 GTCTCAGGTCTTAGATGTTAGGCT 59.353 45.833 0.00 0.00 0.00 4.58
41 42 5.128008 GTCTCAGGTCTTAGATGTTAGGCTT 59.872 44.000 0.00 0.00 0.00 4.35
42 43 5.127845 TCTCAGGTCTTAGATGTTAGGCTTG 59.872 44.000 0.00 0.00 0.00 4.01
43 44 4.162320 TCAGGTCTTAGATGTTAGGCTTGG 59.838 45.833 0.00 0.00 0.00 3.61
44 45 3.456277 AGGTCTTAGATGTTAGGCTTGGG 59.544 47.826 0.00 0.00 0.00 4.12
45 46 3.200165 GGTCTTAGATGTTAGGCTTGGGT 59.800 47.826 0.00 0.00 0.00 4.51
46 47 4.192317 GTCTTAGATGTTAGGCTTGGGTG 58.808 47.826 0.00 0.00 0.00 4.61
47 48 3.844211 TCTTAGATGTTAGGCTTGGGTGT 59.156 43.478 0.00 0.00 0.00 4.16
48 49 2.496899 AGATGTTAGGCTTGGGTGTG 57.503 50.000 0.00 0.00 0.00 3.82
49 50 1.985159 AGATGTTAGGCTTGGGTGTGA 59.015 47.619 0.00 0.00 0.00 3.58
50 51 2.578021 AGATGTTAGGCTTGGGTGTGAT 59.422 45.455 0.00 0.00 0.00 3.06
51 52 2.198827 TGTTAGGCTTGGGTGTGATG 57.801 50.000 0.00 0.00 0.00 3.07
52 53 1.423541 TGTTAGGCTTGGGTGTGATGT 59.576 47.619 0.00 0.00 0.00 3.06
53 54 2.084546 GTTAGGCTTGGGTGTGATGTC 58.915 52.381 0.00 0.00 0.00 3.06
54 55 1.656587 TAGGCTTGGGTGTGATGTCT 58.343 50.000 0.00 0.00 0.00 3.41
55 56 0.037303 AGGCTTGGGTGTGATGTCTG 59.963 55.000 0.00 0.00 0.00 3.51
56 57 0.250901 GGCTTGGGTGTGATGTCTGT 60.251 55.000 0.00 0.00 0.00 3.41
57 58 1.609208 GCTTGGGTGTGATGTCTGTT 58.391 50.000 0.00 0.00 0.00 3.16
58 59 1.956477 GCTTGGGTGTGATGTCTGTTT 59.044 47.619 0.00 0.00 0.00 2.83
59 60 2.287788 GCTTGGGTGTGATGTCTGTTTG 60.288 50.000 0.00 0.00 0.00 2.93
60 61 1.979855 TGGGTGTGATGTCTGTTTGG 58.020 50.000 0.00 0.00 0.00 3.28
61 62 1.214175 TGGGTGTGATGTCTGTTTGGT 59.786 47.619 0.00 0.00 0.00 3.67
62 63 2.439880 TGGGTGTGATGTCTGTTTGGTA 59.560 45.455 0.00 0.00 0.00 3.25
63 64 3.073798 TGGGTGTGATGTCTGTTTGGTAT 59.926 43.478 0.00 0.00 0.00 2.73
64 65 4.079253 GGGTGTGATGTCTGTTTGGTATT 58.921 43.478 0.00 0.00 0.00 1.89
65 66 5.221945 TGGGTGTGATGTCTGTTTGGTATTA 60.222 40.000 0.00 0.00 0.00 0.98
66 67 5.354234 GGGTGTGATGTCTGTTTGGTATTAG 59.646 44.000 0.00 0.00 0.00 1.73
67 68 5.354234 GGTGTGATGTCTGTTTGGTATTAGG 59.646 44.000 0.00 0.00 0.00 2.69
68 69 4.941263 TGTGATGTCTGTTTGGTATTAGGC 59.059 41.667 0.00 0.00 0.00 3.93
69 70 4.335594 GTGATGTCTGTTTGGTATTAGGCC 59.664 45.833 0.00 0.00 0.00 5.19
70 71 3.359695 TGTCTGTTTGGTATTAGGCCC 57.640 47.619 0.00 0.00 0.00 5.80
71 72 2.645297 TGTCTGTTTGGTATTAGGCCCA 59.355 45.455 0.00 0.00 0.00 5.36
72 73 3.279434 GTCTGTTTGGTATTAGGCCCAG 58.721 50.000 0.00 0.00 31.04 4.45
73 74 2.241176 TCTGTTTGGTATTAGGCCCAGG 59.759 50.000 0.00 0.00 31.04 4.45
74 75 1.341581 TGTTTGGTATTAGGCCCAGGC 60.342 52.381 0.00 0.00 41.06 4.85
75 76 1.063942 GTTTGGTATTAGGCCCAGGCT 60.064 52.381 8.89 0.35 42.39 4.58
76 77 2.173996 GTTTGGTATTAGGCCCAGGCTA 59.826 50.000 8.89 0.00 39.70 3.93
77 78 2.433444 TGGTATTAGGCCCAGGCTAT 57.567 50.000 8.89 0.32 40.30 2.97
78 79 1.985159 TGGTATTAGGCCCAGGCTATG 59.015 52.381 8.89 0.00 40.30 2.23
79 80 1.985895 GGTATTAGGCCCAGGCTATGT 59.014 52.381 8.89 0.00 40.30 2.29
80 81 2.290323 GGTATTAGGCCCAGGCTATGTG 60.290 54.545 8.89 0.00 40.30 3.21
81 82 0.111253 ATTAGGCCCAGGCTATGTGC 59.889 55.000 8.89 0.00 40.30 4.57
82 83 1.278302 TTAGGCCCAGGCTATGTGCA 61.278 55.000 8.89 0.00 45.15 4.57
83 84 1.061905 TAGGCCCAGGCTATGTGCAT 61.062 55.000 8.89 0.00 45.15 3.96
84 85 1.900498 GGCCCAGGCTATGTGCATC 60.900 63.158 8.89 0.00 45.15 3.91
85 86 1.900498 GCCCAGGCTATGTGCATCC 60.900 63.158 0.08 0.00 45.15 3.51
86 87 1.842007 CCCAGGCTATGTGCATCCT 59.158 57.895 0.00 0.00 45.15 3.24
87 88 0.184451 CCCAGGCTATGTGCATCCTT 59.816 55.000 0.00 0.00 45.15 3.36
88 89 1.410648 CCCAGGCTATGTGCATCCTTT 60.411 52.381 0.00 0.00 45.15 3.11
89 90 2.158623 CCCAGGCTATGTGCATCCTTTA 60.159 50.000 0.00 0.00 45.15 1.85
90 91 3.499202 CCCAGGCTATGTGCATCCTTTAT 60.499 47.826 0.00 0.00 45.15 1.40
91 92 3.755378 CCAGGCTATGTGCATCCTTTATC 59.245 47.826 0.00 0.00 45.15 1.75
92 93 4.392047 CAGGCTATGTGCATCCTTTATCA 58.608 43.478 0.00 0.00 45.15 2.15
93 94 4.823442 CAGGCTATGTGCATCCTTTATCAA 59.177 41.667 0.00 0.00 45.15 2.57
94 95 4.823989 AGGCTATGTGCATCCTTTATCAAC 59.176 41.667 0.00 0.00 45.15 3.18
95 96 4.823989 GGCTATGTGCATCCTTTATCAACT 59.176 41.667 0.00 0.00 45.15 3.16
96 97 5.278169 GGCTATGTGCATCCTTTATCAACTG 60.278 44.000 0.00 0.00 45.15 3.16
97 98 5.278169 GCTATGTGCATCCTTTATCAACTGG 60.278 44.000 0.00 0.00 42.31 4.00
98 99 4.299586 TGTGCATCCTTTATCAACTGGA 57.700 40.909 0.00 0.00 0.00 3.86
99 100 4.858850 TGTGCATCCTTTATCAACTGGAT 58.141 39.130 0.00 0.00 39.64 3.41
100 101 6.000246 TGTGCATCCTTTATCAACTGGATA 58.000 37.500 0.00 0.00 37.22 2.59
101 102 6.057533 TGTGCATCCTTTATCAACTGGATAG 58.942 40.000 0.00 0.00 39.57 2.08
102 103 5.471456 GTGCATCCTTTATCAACTGGATAGG 59.529 44.000 0.00 0.00 39.57 2.57
103 104 5.132648 TGCATCCTTTATCAACTGGATAGGT 59.867 40.000 0.00 0.00 39.57 3.08
104 105 5.471456 GCATCCTTTATCAACTGGATAGGTG 59.529 44.000 0.00 0.00 43.21 4.00
105 106 6.595682 CATCCTTTATCAACTGGATAGGTGT 58.404 40.000 0.00 0.00 42.42 4.16
106 107 7.689313 GCATCCTTTATCAACTGGATAGGTGTA 60.689 40.741 0.00 0.00 42.42 2.90
107 108 7.361457 TCCTTTATCAACTGGATAGGTGTAG 57.639 40.000 0.00 0.00 42.42 2.74
108 109 5.992217 CCTTTATCAACTGGATAGGTGTAGC 59.008 44.000 0.00 0.00 42.42 3.58
109 110 3.735237 ATCAACTGGATAGGTGTAGCG 57.265 47.619 0.00 0.00 42.42 4.26
110 111 2.730382 TCAACTGGATAGGTGTAGCGA 58.270 47.619 0.00 0.00 42.42 4.93
111 112 2.426024 TCAACTGGATAGGTGTAGCGAC 59.574 50.000 0.00 0.00 42.42 5.19
112 113 2.139323 ACTGGATAGGTGTAGCGACA 57.861 50.000 0.00 0.00 0.00 4.35
113 114 2.025155 ACTGGATAGGTGTAGCGACAG 58.975 52.381 0.00 0.00 35.82 3.51
114 115 2.025155 CTGGATAGGTGTAGCGACAGT 58.975 52.381 0.00 0.00 35.82 3.55
115 116 2.427453 CTGGATAGGTGTAGCGACAGTT 59.573 50.000 0.00 0.00 35.82 3.16
116 117 2.829720 TGGATAGGTGTAGCGACAGTTT 59.170 45.455 0.00 0.00 35.82 2.66
117 118 3.187700 GGATAGGTGTAGCGACAGTTTG 58.812 50.000 0.00 0.00 35.82 2.93
118 119 3.368116 GGATAGGTGTAGCGACAGTTTGT 60.368 47.826 0.00 0.00 35.82 2.83
119 120 2.614829 AGGTGTAGCGACAGTTTGTT 57.385 45.000 0.00 0.00 35.82 2.83
120 121 2.210116 AGGTGTAGCGACAGTTTGTTG 58.790 47.619 0.00 0.00 35.82 3.33
128 129 3.155344 CGACAGTTTGTTGCTTAGACG 57.845 47.619 0.00 0.00 0.00 4.18
129 130 2.792674 CGACAGTTTGTTGCTTAGACGA 59.207 45.455 0.00 0.00 0.00 4.20
130 131 3.361724 CGACAGTTTGTTGCTTAGACGAC 60.362 47.826 0.00 0.00 0.00 4.34
131 132 2.538449 ACAGTTTGTTGCTTAGACGACG 59.462 45.455 0.00 0.00 0.00 5.12
132 133 2.096909 CAGTTTGTTGCTTAGACGACGG 60.097 50.000 0.00 0.00 0.00 4.79
133 134 0.863144 TTTGTTGCTTAGACGACGGC 59.137 50.000 0.00 0.00 0.00 5.68
134 135 0.032952 TTGTTGCTTAGACGACGGCT 59.967 50.000 8.97 8.97 0.00 5.52
135 136 0.032952 TGTTGCTTAGACGACGGCTT 59.967 50.000 9.38 0.00 0.00 4.35
136 137 1.145803 GTTGCTTAGACGACGGCTTT 58.854 50.000 9.38 0.00 0.00 3.51
137 138 2.288334 TGTTGCTTAGACGACGGCTTTA 60.288 45.455 9.38 0.00 0.00 1.85
138 139 2.273370 TGCTTAGACGACGGCTTTAG 57.727 50.000 9.38 8.42 0.00 1.85
139 140 1.542915 TGCTTAGACGACGGCTTTAGT 59.457 47.619 9.38 0.00 0.00 2.24
140 141 2.029649 TGCTTAGACGACGGCTTTAGTT 60.030 45.455 9.38 0.00 0.00 2.24
141 142 2.991866 GCTTAGACGACGGCTTTAGTTT 59.008 45.455 9.38 0.00 0.00 2.66
142 143 3.431233 GCTTAGACGACGGCTTTAGTTTT 59.569 43.478 9.38 0.00 0.00 2.43
143 144 4.622740 GCTTAGACGACGGCTTTAGTTTTA 59.377 41.667 9.38 0.00 0.00 1.52
144 145 5.443824 GCTTAGACGACGGCTTTAGTTTTAC 60.444 44.000 9.38 0.00 0.00 2.01
145 146 4.248691 AGACGACGGCTTTAGTTTTACT 57.751 40.909 0.00 0.00 0.00 2.24
146 147 5.376854 AGACGACGGCTTTAGTTTTACTA 57.623 39.130 0.00 0.00 0.00 1.82
147 148 5.958955 AGACGACGGCTTTAGTTTTACTAT 58.041 37.500 0.00 0.00 29.64 2.12
148 149 6.393171 AGACGACGGCTTTAGTTTTACTATT 58.607 36.000 0.00 0.00 29.64 1.73
149 150 6.309737 AGACGACGGCTTTAGTTTTACTATTG 59.690 38.462 0.00 0.00 29.64 1.90
150 151 5.928264 ACGACGGCTTTAGTTTTACTATTGT 59.072 36.000 0.00 0.00 29.64 2.71
151 152 7.090173 ACGACGGCTTTAGTTTTACTATTGTA 58.910 34.615 0.00 0.00 29.64 2.41
152 153 7.761249 ACGACGGCTTTAGTTTTACTATTGTAT 59.239 33.333 0.00 0.00 29.64 2.29
153 154 8.054236 CGACGGCTTTAGTTTTACTATTGTATG 58.946 37.037 0.00 0.00 29.64 2.39
154 155 9.090692 GACGGCTTTAGTTTTACTATTGTATGA 57.909 33.333 0.00 0.00 29.64 2.15
155 156 8.876790 ACGGCTTTAGTTTTACTATTGTATGAC 58.123 33.333 0.00 0.00 29.64 3.06
156 157 9.095065 CGGCTTTAGTTTTACTATTGTATGACT 57.905 33.333 7.73 7.73 29.64 3.41
169 170 9.436957 ACTATTGTATGACTTTGTAAGGTCTTG 57.563 33.333 8.11 0.00 34.01 3.02
170 171 9.436957 CTATTGTATGACTTTGTAAGGTCTTGT 57.563 33.333 8.11 0.00 34.01 3.16
171 172 7.490962 TTGTATGACTTTGTAAGGTCTTGTG 57.509 36.000 8.11 0.00 34.01 3.33
172 173 6.822442 TGTATGACTTTGTAAGGTCTTGTGA 58.178 36.000 8.11 0.00 34.01 3.58
173 174 6.929049 TGTATGACTTTGTAAGGTCTTGTGAG 59.071 38.462 8.11 0.00 34.01 3.51
174 175 5.607939 TGACTTTGTAAGGTCTTGTGAGA 57.392 39.130 8.11 0.00 34.01 3.27
175 176 5.984725 TGACTTTGTAAGGTCTTGTGAGAA 58.015 37.500 8.11 0.00 32.66 2.87
176 177 6.591935 TGACTTTGTAAGGTCTTGTGAGAAT 58.408 36.000 8.11 0.00 32.66 2.40
177 178 7.732025 TGACTTTGTAAGGTCTTGTGAGAATA 58.268 34.615 8.11 0.00 32.66 1.75
178 179 8.208224 TGACTTTGTAAGGTCTTGTGAGAATAA 58.792 33.333 8.11 0.00 32.66 1.40
179 180 9.220767 GACTTTGTAAGGTCTTGTGAGAATAAT 57.779 33.333 0.23 0.00 32.66 1.28
180 181 9.574516 ACTTTGTAAGGTCTTGTGAGAATAATT 57.425 29.630 0.00 0.00 32.66 1.40
203 204 9.950680 AATTAATAAAATGGTCGTATGCAGAAG 57.049 29.630 0.00 0.00 0.00 2.85
204 205 8.500753 TTAATAAAATGGTCGTATGCAGAAGT 57.499 30.769 0.00 0.00 0.00 3.01
205 206 9.602568 TTAATAAAATGGTCGTATGCAGAAGTA 57.397 29.630 0.00 0.00 0.00 2.24
206 207 7.715265 ATAAAATGGTCGTATGCAGAAGTAG 57.285 36.000 0.00 0.00 0.00 2.57
207 208 2.579207 TGGTCGTATGCAGAAGTAGC 57.421 50.000 0.00 0.00 0.00 3.58
229 230 1.579698 CAGCGGAGATGGAGAACATG 58.420 55.000 0.00 0.00 42.04 3.21
230 231 0.179062 AGCGGAGATGGAGAACATGC 60.179 55.000 0.00 0.00 40.72 4.06
231 232 1.493950 GCGGAGATGGAGAACATGCG 61.494 60.000 0.00 0.00 40.72 4.73
232 233 0.103026 CGGAGATGGAGAACATGCGA 59.897 55.000 0.00 0.00 40.72 5.10
233 234 1.863267 GGAGATGGAGAACATGCGAG 58.137 55.000 0.00 0.00 40.72 5.03
234 235 1.410517 GGAGATGGAGAACATGCGAGA 59.589 52.381 0.00 0.00 40.72 4.04
235 236 2.159043 GGAGATGGAGAACATGCGAGAA 60.159 50.000 0.00 0.00 40.72 2.87
236 237 3.525537 GAGATGGAGAACATGCGAGAAA 58.474 45.455 0.00 0.00 40.72 2.52
237 238 4.125703 GAGATGGAGAACATGCGAGAAAT 58.874 43.478 0.00 0.00 40.72 2.17
238 239 4.521146 AGATGGAGAACATGCGAGAAATT 58.479 39.130 0.00 0.00 40.72 1.82
239 240 4.946157 AGATGGAGAACATGCGAGAAATTT 59.054 37.500 0.00 0.00 40.72 1.82
240 241 6.115446 AGATGGAGAACATGCGAGAAATTTA 58.885 36.000 0.00 0.00 40.72 1.40
241 242 5.545658 TGGAGAACATGCGAGAAATTTAC 57.454 39.130 0.00 0.00 0.00 2.01
242 243 5.245531 TGGAGAACATGCGAGAAATTTACT 58.754 37.500 0.00 0.00 0.00 2.24
243 244 6.403049 TGGAGAACATGCGAGAAATTTACTA 58.597 36.000 0.00 0.00 0.00 1.82
244 245 6.535150 TGGAGAACATGCGAGAAATTTACTAG 59.465 38.462 0.00 0.00 0.00 2.57
245 246 6.757010 GGAGAACATGCGAGAAATTTACTAGA 59.243 38.462 0.00 0.00 0.00 2.43
246 247 7.277981 GGAGAACATGCGAGAAATTTACTAGAA 59.722 37.037 0.00 0.00 0.00 2.10
247 248 8.547967 AGAACATGCGAGAAATTTACTAGAAA 57.452 30.769 0.00 0.00 0.00 2.52
248 249 8.443937 AGAACATGCGAGAAATTTACTAGAAAC 58.556 33.333 0.00 0.00 0.00 2.78
249 250 7.073342 ACATGCGAGAAATTTACTAGAAACC 57.927 36.000 0.00 0.00 0.00 3.27
250 251 6.653320 ACATGCGAGAAATTTACTAGAAACCA 59.347 34.615 0.00 0.00 0.00 3.67
251 252 6.476243 TGCGAGAAATTTACTAGAAACCAC 57.524 37.500 0.00 0.00 0.00 4.16
252 253 5.992829 TGCGAGAAATTTACTAGAAACCACA 59.007 36.000 0.00 0.00 0.00 4.17
253 254 6.483974 TGCGAGAAATTTACTAGAAACCACAA 59.516 34.615 0.00 0.00 0.00 3.33
254 255 6.795593 GCGAGAAATTTACTAGAAACCACAAC 59.204 38.462 0.00 0.00 0.00 3.32
255 256 7.007697 CGAGAAATTTACTAGAAACCACAACG 58.992 38.462 0.00 0.00 0.00 4.10
256 257 7.095940 CGAGAAATTTACTAGAAACCACAACGA 60.096 37.037 0.00 0.00 0.00 3.85
257 258 7.858583 AGAAATTTACTAGAAACCACAACGAC 58.141 34.615 0.00 0.00 0.00 4.34
258 259 7.713942 AGAAATTTACTAGAAACCACAACGACT 59.286 33.333 0.00 0.00 0.00 4.18
259 260 7.417496 AATTTACTAGAAACCACAACGACTC 57.583 36.000 0.00 0.00 0.00 3.36
260 261 3.382048 ACTAGAAACCACAACGACTCC 57.618 47.619 0.00 0.00 0.00 3.85
261 262 2.963782 ACTAGAAACCACAACGACTCCT 59.036 45.455 0.00 0.00 0.00 3.69
262 263 2.240493 AGAAACCACAACGACTCCTG 57.760 50.000 0.00 0.00 0.00 3.86
263 264 1.760613 AGAAACCACAACGACTCCTGA 59.239 47.619 0.00 0.00 0.00 3.86
264 265 2.368875 AGAAACCACAACGACTCCTGAT 59.631 45.455 0.00 0.00 0.00 2.90
265 266 2.930826 AACCACAACGACTCCTGATT 57.069 45.000 0.00 0.00 0.00 2.57
266 267 2.169832 ACCACAACGACTCCTGATTG 57.830 50.000 0.00 0.00 0.00 2.67
267 268 1.691976 ACCACAACGACTCCTGATTGA 59.308 47.619 0.00 0.00 0.00 2.57
268 269 2.069273 CCACAACGACTCCTGATTGAC 58.931 52.381 0.00 0.00 0.00 3.18
269 270 2.289072 CCACAACGACTCCTGATTGACT 60.289 50.000 0.00 0.00 0.00 3.41
270 271 2.989840 CACAACGACTCCTGATTGACTC 59.010 50.000 0.00 0.00 0.00 3.36
271 272 2.254459 CAACGACTCCTGATTGACTCG 58.746 52.381 0.00 0.00 0.00 4.18
272 273 1.822506 ACGACTCCTGATTGACTCGA 58.177 50.000 0.00 0.00 0.00 4.04
273 274 1.740585 ACGACTCCTGATTGACTCGAG 59.259 52.381 11.84 11.84 0.00 4.04
274 275 2.010497 CGACTCCTGATTGACTCGAGA 58.990 52.381 21.68 0.00 0.00 4.04
275 276 2.420372 CGACTCCTGATTGACTCGAGAA 59.580 50.000 21.68 3.89 0.00 2.87
276 277 3.729462 CGACTCCTGATTGACTCGAGAAC 60.729 52.174 21.68 13.04 0.00 3.01
277 278 3.157881 ACTCCTGATTGACTCGAGAACA 58.842 45.455 21.68 15.56 0.00 3.18
278 279 3.192422 ACTCCTGATTGACTCGAGAACAG 59.808 47.826 21.68 17.72 0.00 3.16
279 280 2.493675 TCCTGATTGACTCGAGAACAGG 59.506 50.000 21.68 24.33 42.97 4.00
280 281 2.493675 CCTGATTGACTCGAGAACAGGA 59.506 50.000 26.44 13.10 43.91 3.86
281 282 3.056536 CCTGATTGACTCGAGAACAGGAA 60.057 47.826 26.44 12.60 43.91 3.36
282 283 4.172505 CTGATTGACTCGAGAACAGGAAG 58.827 47.826 21.68 11.96 0.00 3.46
283 284 3.826729 TGATTGACTCGAGAACAGGAAGA 59.173 43.478 21.68 4.04 0.00 2.87
284 285 4.280929 TGATTGACTCGAGAACAGGAAGAA 59.719 41.667 21.68 3.36 0.00 2.52
285 286 3.644884 TGACTCGAGAACAGGAAGAAC 57.355 47.619 21.68 0.00 0.00 3.01
286 287 3.223435 TGACTCGAGAACAGGAAGAACT 58.777 45.455 21.68 0.00 0.00 3.01
287 288 3.253677 TGACTCGAGAACAGGAAGAACTC 59.746 47.826 21.68 1.41 0.00 3.01
288 289 3.223435 ACTCGAGAACAGGAAGAACTCA 58.777 45.455 21.68 0.00 0.00 3.41
289 290 3.637229 ACTCGAGAACAGGAAGAACTCAA 59.363 43.478 21.68 0.00 0.00 3.02
290 291 4.233789 CTCGAGAACAGGAAGAACTCAAG 58.766 47.826 6.58 0.00 0.00 3.02
291 292 3.889538 TCGAGAACAGGAAGAACTCAAGA 59.110 43.478 0.00 0.00 0.00 3.02
292 293 4.524714 TCGAGAACAGGAAGAACTCAAGAT 59.475 41.667 0.00 0.00 0.00 2.40
293 294 4.624882 CGAGAACAGGAAGAACTCAAGATG 59.375 45.833 0.00 0.00 0.00 2.90
294 295 4.904241 AGAACAGGAAGAACTCAAGATGG 58.096 43.478 0.00 0.00 0.00 3.51
295 296 4.594920 AGAACAGGAAGAACTCAAGATGGA 59.405 41.667 0.00 0.00 0.00 3.41
296 297 4.278975 ACAGGAAGAACTCAAGATGGAC 57.721 45.455 0.00 0.00 0.00 4.02
297 298 3.906846 ACAGGAAGAACTCAAGATGGACT 59.093 43.478 0.00 0.00 0.00 3.85
298 299 4.020662 ACAGGAAGAACTCAAGATGGACTC 60.021 45.833 0.00 0.00 0.00 3.36
299 300 3.194542 AGGAAGAACTCAAGATGGACTCG 59.805 47.826 0.00 0.00 0.00 4.18
300 301 2.663826 AGAACTCAAGATGGACTCGC 57.336 50.000 0.00 0.00 0.00 5.03
301 302 1.895798 AGAACTCAAGATGGACTCGCA 59.104 47.619 0.00 0.00 0.00 5.10
302 303 1.996191 GAACTCAAGATGGACTCGCAC 59.004 52.381 0.00 0.00 0.00 5.34
303 304 0.969149 ACTCAAGATGGACTCGCACA 59.031 50.000 0.00 0.00 0.00 4.57
304 305 1.344438 ACTCAAGATGGACTCGCACAA 59.656 47.619 0.00 0.00 0.00 3.33
305 306 2.224281 ACTCAAGATGGACTCGCACAAA 60.224 45.455 0.00 0.00 0.00 2.83
306 307 2.807967 CTCAAGATGGACTCGCACAAAA 59.192 45.455 0.00 0.00 0.00 2.44
307 308 3.411446 TCAAGATGGACTCGCACAAAAT 58.589 40.909 0.00 0.00 0.00 1.82
308 309 4.574892 TCAAGATGGACTCGCACAAAATA 58.425 39.130 0.00 0.00 0.00 1.40
309 310 5.000591 TCAAGATGGACTCGCACAAAATAA 58.999 37.500 0.00 0.00 0.00 1.40
310 311 5.471797 TCAAGATGGACTCGCACAAAATAAA 59.528 36.000 0.00 0.00 0.00 1.40
311 312 6.150976 TCAAGATGGACTCGCACAAAATAAAT 59.849 34.615 0.00 0.00 0.00 1.40
312 313 6.124088 AGATGGACTCGCACAAAATAAATC 57.876 37.500 0.00 0.00 0.00 2.17
313 314 5.647658 AGATGGACTCGCACAAAATAAATCA 59.352 36.000 0.00 0.00 0.00 2.57
314 315 5.041951 TGGACTCGCACAAAATAAATCAC 57.958 39.130 0.00 0.00 0.00 3.06
315 316 4.759693 TGGACTCGCACAAAATAAATCACT 59.240 37.500 0.00 0.00 0.00 3.41
316 317 5.088739 GGACTCGCACAAAATAAATCACTG 58.911 41.667 0.00 0.00 0.00 3.66
317 318 5.106712 GGACTCGCACAAAATAAATCACTGA 60.107 40.000 0.00 0.00 0.00 3.41
318 319 6.312399 ACTCGCACAAAATAAATCACTGAA 57.688 33.333 0.00 0.00 0.00 3.02
319 320 6.373779 ACTCGCACAAAATAAATCACTGAAG 58.626 36.000 0.00 0.00 0.00 3.02
320 321 6.204688 ACTCGCACAAAATAAATCACTGAAGA 59.795 34.615 0.00 0.00 0.00 2.87
321 322 7.094634 ACTCGCACAAAATAAATCACTGAAGAT 60.095 33.333 0.00 0.00 0.00 2.40
322 323 8.262715 TCGCACAAAATAAATCACTGAAGATA 57.737 30.769 0.00 0.00 0.00 1.98
323 324 8.726068 TCGCACAAAATAAATCACTGAAGATAA 58.274 29.630 0.00 0.00 0.00 1.75
324 325 9.340695 CGCACAAAATAAATCACTGAAGATAAA 57.659 29.630 0.00 0.00 0.00 1.40
331 332 9.736023 AATAAATCACTGAAGATAAAATTCGGC 57.264 29.630 0.00 0.00 36.66 5.54
332 333 4.857871 TCACTGAAGATAAAATTCGGCG 57.142 40.909 0.00 0.00 36.66 6.46
333 334 3.063452 TCACTGAAGATAAAATTCGGCGC 59.937 43.478 0.00 0.00 36.66 6.53
334 335 2.354821 ACTGAAGATAAAATTCGGCGCC 59.645 45.455 19.07 19.07 36.66 6.53
335 336 1.329292 TGAAGATAAAATTCGGCGCCG 59.671 47.619 42.13 42.13 41.35 6.46
351 352 1.059549 CGCCGAGCAAAATCAAAATGC 59.940 47.619 0.00 0.00 40.34 3.56
352 353 2.067766 GCCGAGCAAAATCAAAATGCA 58.932 42.857 0.00 0.00 42.45 3.96
353 354 2.674357 GCCGAGCAAAATCAAAATGCAT 59.326 40.909 0.00 0.00 42.45 3.96
354 355 3.484557 GCCGAGCAAAATCAAAATGCATG 60.485 43.478 0.00 0.00 42.45 4.06
355 356 3.680937 CCGAGCAAAATCAAAATGCATGT 59.319 39.130 0.00 0.00 42.45 3.21
368 369 1.276859 TGCATGTGGGATGAGCTCCT 61.277 55.000 12.15 0.00 44.28 3.69
489 515 2.015227 CTCGCCCTCTCTCTTCTGCC 62.015 65.000 0.00 0.00 0.00 4.85
497 523 1.304464 TCTCTTCTGCCAGGCTCGA 60.304 57.895 14.15 6.44 0.00 4.04
532 558 2.354729 CGTTGGGAAGGGATGGCA 59.645 61.111 0.00 0.00 0.00 4.92
552 578 3.767230 CTCGCGTCCGTGCAAGTG 61.767 66.667 5.77 0.00 35.54 3.16
643 681 4.268720 GAGATCTCTCCCACGGCT 57.731 61.111 15.80 0.00 37.02 5.52
722 763 4.838152 CGGCCACCACTCCATCGG 62.838 72.222 2.24 0.00 0.00 4.18
728 769 2.283529 ACCACTCCATCGGCGTCTT 61.284 57.895 6.85 0.00 0.00 3.01
766 807 2.049156 CTTCTGCCGTCTGCGTCA 60.049 61.111 0.00 0.00 45.60 4.35
937 978 2.284699 ACGCCTAGCTCCCCTGTT 60.285 61.111 0.00 0.00 0.00 3.16
967 1008 1.153647 CGCCTCGGATGTGTTGCTA 60.154 57.895 0.00 0.00 0.00 3.49
975 1016 2.813226 GATGTGTTGCTACCGGCCCA 62.813 60.000 0.00 0.00 40.92 5.36
1040 1098 3.434319 CATGACGCTGCCACCACC 61.434 66.667 0.00 0.00 0.00 4.61
1059 1117 2.045926 GCGATGTTGTGGGCCTCT 60.046 61.111 4.53 0.00 0.00 3.69
1181 1249 1.069022 GCATGACGCAGACACAAATGT 60.069 47.619 0.00 0.00 40.89 2.71
1391 1462 2.126888 GCGTGGATGTTGCAACCG 60.127 61.111 26.14 21.25 0.00 4.44
1410 1481 1.036707 GATGGCGTCCTCTAAGCTCT 58.963 55.000 0.00 0.00 32.56 4.09
1417 1488 1.408702 GTCCTCTAAGCTCTCTGCCAG 59.591 57.143 0.00 0.00 44.23 4.85
1419 1490 1.687682 CCTCTAAGCTCTCTGCCAGGA 60.688 57.143 0.00 0.00 44.23 3.86
1421 1492 1.827969 TCTAAGCTCTCTGCCAGGAAC 59.172 52.381 0.00 0.00 44.23 3.62
1478 1549 1.005340 CGTCCTGCTCTTGCTTCATC 58.995 55.000 0.00 0.00 40.48 2.92
1514 1585 2.579201 CGCACTCCCATCGAAGGT 59.421 61.111 5.87 0.00 0.00 3.50
1521 1592 0.250234 TCCCATCGAAGGTGCTTCAG 59.750 55.000 5.87 0.00 40.17 3.02
1574 1645 3.236391 TGGCTCACCAACCTCGTT 58.764 55.556 0.00 0.00 45.37 3.85
1855 1935 4.416516 TCCTATGTTGTCTTCCACTGAGA 58.583 43.478 0.00 0.00 0.00 3.27
1984 2064 0.103937 CTCAGGCGAGGGACAAGATC 59.896 60.000 0.00 0.00 35.44 2.75
2075 2155 1.737838 TGATGGATTGTGCTCGGTTC 58.262 50.000 0.00 0.00 0.00 3.62
2089 2170 1.542472 TCGGTTCTCGTGCTATTGACA 59.458 47.619 0.00 0.00 40.32 3.58
2117 2198 6.350445 GCCTTGGTATTTTGAGTCATCATTGT 60.350 38.462 0.00 0.00 34.73 2.71
2120 2202 5.353956 TGGTATTTTGAGTCATCATTGTCGG 59.646 40.000 0.00 0.00 34.73 4.79
2126 2209 4.641396 TGAGTCATCATTGTCGGTTTCTT 58.359 39.130 0.00 0.00 0.00 2.52
2129 2212 3.189287 GTCATCATTGTCGGTTTCTTGCT 59.811 43.478 0.00 0.00 0.00 3.91
2186 2269 1.064758 TGCTTGTTGAGTGTTGGGAGT 60.065 47.619 0.00 0.00 0.00 3.85
2352 2442 3.940209 AAAAATTCAGCGCCATCTCAA 57.060 38.095 2.29 0.00 0.00 3.02
2368 2458 6.127366 GCCATCTCAAGAACCCATGAATAAAA 60.127 38.462 0.00 0.00 0.00 1.52
2369 2459 7.579339 GCCATCTCAAGAACCCATGAATAAAAA 60.579 37.037 0.00 0.00 0.00 1.94
2371 2461 7.466746 TCTCAAGAACCCATGAATAAAAAGG 57.533 36.000 0.00 0.00 0.00 3.11
2373 2463 7.728083 TCTCAAGAACCCATGAATAAAAAGGAA 59.272 33.333 0.00 0.00 0.00 3.36
2374 2464 7.895759 TCAAGAACCCATGAATAAAAAGGAAG 58.104 34.615 0.00 0.00 0.00 3.46
2376 2466 8.367156 CAAGAACCCATGAATAAAAAGGAAGAA 58.633 33.333 0.00 0.00 0.00 2.52
2377 2467 7.896811 AGAACCCATGAATAAAAAGGAAGAAC 58.103 34.615 0.00 0.00 0.00 3.01
2378 2468 6.267496 ACCCATGAATAAAAAGGAAGAACG 57.733 37.500 0.00 0.00 0.00 3.95
2379 2469 6.007703 ACCCATGAATAAAAAGGAAGAACGA 58.992 36.000 0.00 0.00 0.00 3.85
2382 2472 6.072175 CCATGAATAAAAAGGAAGAACGACCA 60.072 38.462 0.00 0.00 0.00 4.02
2383 2473 7.362920 CCATGAATAAAAAGGAAGAACGACCAT 60.363 37.037 0.00 0.00 0.00 3.55
2384 2474 8.673711 CATGAATAAAAAGGAAGAACGACCATA 58.326 33.333 0.00 0.00 0.00 2.74
2386 2476 9.893634 TGAATAAAAAGGAAGAACGACCATATA 57.106 29.630 0.00 0.00 0.00 0.86
2404 2494 5.398353 CCATATAAAGGCTAGGGATGGATGG 60.398 48.000 11.16 3.25 35.41 3.51
2405 2495 1.152649 AAAGGCTAGGGATGGATGGG 58.847 55.000 0.00 0.00 0.00 4.00
2409 2499 1.840635 GGCTAGGGATGGATGGGTATC 59.159 57.143 0.00 0.00 0.00 2.24
2410 2500 1.482593 GCTAGGGATGGATGGGTATCG 59.517 57.143 0.00 0.00 33.98 2.92
2417 2507 4.384208 GGGATGGATGGGTATCGATTTAGG 60.384 50.000 1.71 0.00 32.68 2.69
2434 2524 6.238842 CGATTTAGGCATGATTTTCCATCACT 60.239 38.462 0.00 0.00 0.00 3.41
2438 2528 4.159135 AGGCATGATTTTCCATCACTGAAC 59.841 41.667 0.00 0.00 0.00 3.18
2441 2531 5.336213 GCATGATTTTCCATCACTGAACACT 60.336 40.000 0.00 0.00 0.00 3.55
2442 2532 6.127925 GCATGATTTTCCATCACTGAACACTA 60.128 38.462 0.00 0.00 0.00 2.74
2445 2535 7.819644 TGATTTTCCATCACTGAACACTAATG 58.180 34.615 0.00 0.00 0.00 1.90
2460 2550 6.252599 ACACTAATGATAGCCAAGGAATCA 57.747 37.500 6.93 6.93 34.35 2.57
2465 2555 3.114606 TGATAGCCAAGGAATCACAGGA 58.885 45.455 0.00 0.00 0.00 3.86
2467 2557 2.978156 AGCCAAGGAATCACAGGAAA 57.022 45.000 0.00 0.00 0.00 3.13
2468 2558 3.463048 AGCCAAGGAATCACAGGAAAT 57.537 42.857 0.00 0.00 0.00 2.17
2474 2564 6.536224 GCCAAGGAATCACAGGAAATAAATTG 59.464 38.462 0.00 0.00 0.00 2.32
2476 2566 6.225981 AGGAATCACAGGAAATAAATTGGC 57.774 37.500 0.00 0.00 0.00 4.52
2493 2583 3.791973 TGGCACAACAGAAAAACGAAT 57.208 38.095 0.00 0.00 31.92 3.34
2495 2585 5.250235 TGGCACAACAGAAAAACGAATTA 57.750 34.783 0.00 0.00 31.92 1.40
2496 2586 5.651530 TGGCACAACAGAAAAACGAATTAA 58.348 33.333 0.00 0.00 31.92 1.40
2502 2592 7.219917 CACAACAGAAAAACGAATTAAGCAAGA 59.780 33.333 0.00 0.00 0.00 3.02
2515 2605 5.772825 TTAAGCAAGAACAAACAGCAGAT 57.227 34.783 0.00 0.00 0.00 2.90
2519 2609 3.666374 GCAAGAACAAACAGCAGATCTCG 60.666 47.826 0.00 0.00 0.00 4.04
2522 2612 2.086054 ACAAACAGCAGATCTCGACC 57.914 50.000 0.00 0.00 0.00 4.79
2524 2614 1.728971 CAAACAGCAGATCTCGACCAC 59.271 52.381 0.00 0.00 0.00 4.16
2526 2616 0.969149 ACAGCAGATCTCGACCACAA 59.031 50.000 0.00 0.00 0.00 3.33
2531 2621 2.610479 GCAGATCTCGACCACAACAAGA 60.610 50.000 0.00 0.00 0.00 3.02
2540 2630 3.366273 CGACCACAACAAGATTGGGAATG 60.366 47.826 0.00 0.00 34.41 2.67
2541 2631 2.899256 ACCACAACAAGATTGGGAATGG 59.101 45.455 0.00 2.46 34.41 3.16
2569 2659 8.567285 TGAGGTTTTATTTCTCAGATTTCTCC 57.433 34.615 0.00 0.00 33.21 3.71
2570 2660 8.386264 TGAGGTTTTATTTCTCAGATTTCTCCT 58.614 33.333 0.00 0.00 33.21 3.69
2571 2661 9.237187 GAGGTTTTATTTCTCAGATTTCTCCTT 57.763 33.333 0.00 0.00 0.00 3.36
2572 2662 9.593565 AGGTTTTATTTCTCAGATTTCTCCTTT 57.406 29.630 0.00 0.00 0.00 3.11
2573 2663 9.847706 GGTTTTATTTCTCAGATTTCTCCTTTC 57.152 33.333 0.00 0.00 0.00 2.62
2574 2664 9.847706 GTTTTATTTCTCAGATTTCTCCTTTCC 57.152 33.333 0.00 0.00 0.00 3.13
2575 2665 7.849804 TTATTTCTCAGATTTCTCCTTTCCG 57.150 36.000 0.00 0.00 0.00 4.30
2576 2666 5.483685 TTTCTCAGATTTCTCCTTTCCGA 57.516 39.130 0.00 0.00 0.00 4.55
2577 2667 5.483685 TTCTCAGATTTCTCCTTTCCGAA 57.516 39.130 0.00 0.00 0.00 4.30
2578 2668 5.683876 TCTCAGATTTCTCCTTTCCGAAT 57.316 39.130 0.00 0.00 0.00 3.34
2579 2669 6.054860 TCTCAGATTTCTCCTTTCCGAATT 57.945 37.500 0.00 0.00 0.00 2.17
2580 2670 6.476378 TCTCAGATTTCTCCTTTCCGAATTT 58.524 36.000 0.00 0.00 0.00 1.82
2581 2671 6.942576 TCTCAGATTTCTCCTTTCCGAATTTT 59.057 34.615 0.00 0.00 0.00 1.82
2582 2672 7.448469 TCTCAGATTTCTCCTTTCCGAATTTTT 59.552 33.333 0.00 0.00 0.00 1.94
2681 2776 1.607509 GCTGCTCTGTTTCTCTGCTCA 60.608 52.381 0.00 0.00 0.00 4.26
2684 2779 2.301009 TGCTCTGTTTCTCTGCTCATCA 59.699 45.455 0.00 0.00 0.00 3.07
2685 2780 3.055312 TGCTCTGTTTCTCTGCTCATCAT 60.055 43.478 0.00 0.00 0.00 2.45
2707 2816 0.755327 ACGGCTGCAAGGAAAACCTT 60.755 50.000 0.50 0.00 0.00 3.50
2738 2847 0.554792 ATATGCCTGGAGCTGCCTTT 59.445 50.000 1.53 0.00 44.23 3.11
2803 2913 4.953579 AGCCCAAAACTCTAAACAAACAGA 59.046 37.500 0.00 0.00 0.00 3.41
2820 2930 7.951591 ACAAACAGACATTTTTACTTAGCCAT 58.048 30.769 0.00 0.00 0.00 4.40
2856 2967 1.421268 TCCACTCTTGAGCAACACCAT 59.579 47.619 0.00 0.00 0.00 3.55
2874 2985 6.306987 ACACCATAATCACTCTCTTGGTTTT 58.693 36.000 0.00 0.00 35.35 2.43
2880 2991 8.663911 CATAATCACTCTCTTGGTTTTCTTCTC 58.336 37.037 0.00 0.00 0.00 2.87
2896 3007 7.510549 TTTCTTCTCAGTGGATTTTGGTAAG 57.489 36.000 0.00 0.00 0.00 2.34
2922 3033 7.309194 GCATACCAAAATAACCTTCACTTGACT 60.309 37.037 0.00 0.00 0.00 3.41
2924 3035 7.039313 ACCAAAATAACCTTCACTTGACTTC 57.961 36.000 0.00 0.00 0.00 3.01
2939 3050 2.223735 TGACTTCGTCTTCTCGTTTGCT 60.224 45.455 0.00 0.00 33.15 3.91
2951 3062 5.854010 TCTCGTTTGCTTCCATATAGTCT 57.146 39.130 0.00 0.00 0.00 3.24
2967 3079 7.174946 CCATATAGTCTTTGTCCAAACTTGTGT 59.825 37.037 0.00 0.00 0.00 3.72
2990 3102 1.099879 GCTTTGAGCCGCATGATCCT 61.100 55.000 0.00 0.00 34.48 3.24
3002 3114 2.125512 GATCCTGCGCAACGTCCT 60.126 61.111 13.05 0.00 0.00 3.85
3003 3115 2.434884 ATCCTGCGCAACGTCCTG 60.435 61.111 13.05 0.00 0.00 3.86
3004 3116 3.240134 ATCCTGCGCAACGTCCTGT 62.240 57.895 13.05 0.00 0.00 4.00
3005 3117 2.731691 ATCCTGCGCAACGTCCTGTT 62.732 55.000 13.05 0.00 43.09 3.16
3012 3124 4.892002 AACGTCCTGTTGGGGAAC 57.108 55.556 0.00 0.00 40.00 3.62
3013 3125 1.227734 AACGTCCTGTTGGGGAACG 60.228 57.895 0.00 0.00 40.00 3.95
3014 3126 1.974973 AACGTCCTGTTGGGGAACGT 61.975 55.000 0.00 0.00 41.24 3.99
3015 3127 1.227734 CGTCCTGTTGGGGAACGTT 60.228 57.895 0.00 0.00 37.10 3.99
3016 3128 1.503818 CGTCCTGTTGGGGAACGTTG 61.504 60.000 5.00 0.00 37.10 4.10
3017 3129 1.527380 TCCTGTTGGGGAACGTTGC 60.527 57.895 11.85 11.85 35.33 4.17
3018 3130 1.826054 CCTGTTGGGGAACGTTGCA 60.826 57.895 21.74 0.00 0.00 4.08
3019 3131 1.654220 CTGTTGGGGAACGTTGCAG 59.346 57.895 21.74 5.93 0.00 4.41
3020 3132 0.817634 CTGTTGGGGAACGTTGCAGA 60.818 55.000 21.74 3.97 0.00 4.26
3021 3133 0.394488 TGTTGGGGAACGTTGCAGAA 60.394 50.000 21.74 10.10 0.00 3.02
3022 3134 0.741915 GTTGGGGAACGTTGCAGAAA 59.258 50.000 21.74 9.26 0.00 2.52
3023 3135 1.135333 GTTGGGGAACGTTGCAGAAAA 59.865 47.619 21.74 6.84 0.00 2.29
3024 3136 0.741915 TGGGGAACGTTGCAGAAAAC 59.258 50.000 21.74 2.56 0.00 2.43
3025 3137 0.741915 GGGGAACGTTGCAGAAAACA 59.258 50.000 21.74 0.00 0.00 2.83
3026 3138 1.135333 GGGGAACGTTGCAGAAAACAA 59.865 47.619 21.74 0.00 0.00 2.83
3027 3139 2.417515 GGGGAACGTTGCAGAAAACAAA 60.418 45.455 21.74 0.00 0.00 2.83
3028 3140 3.254892 GGGAACGTTGCAGAAAACAAAA 58.745 40.909 21.74 0.00 0.00 2.44
3029 3141 3.680458 GGGAACGTTGCAGAAAACAAAAA 59.320 39.130 21.74 0.00 0.00 1.94
3048 3160 5.855740 AAAAATTTCCTACGGTTTCACCA 57.144 34.783 0.00 0.00 38.47 4.17
3049 3161 5.855740 AAAATTTCCTACGGTTTCACCAA 57.144 34.783 0.00 0.00 38.47 3.67
3050 3162 5.447624 AAATTTCCTACGGTTTCACCAAG 57.552 39.130 0.00 0.00 38.47 3.61
3051 3163 3.842007 TTTCCTACGGTTTCACCAAGA 57.158 42.857 0.00 0.00 38.47 3.02
3052 3164 4.360951 TTTCCTACGGTTTCACCAAGAT 57.639 40.909 0.00 0.00 38.47 2.40
3053 3165 3.604875 TCCTACGGTTTCACCAAGATC 57.395 47.619 0.00 0.00 38.47 2.75
3054 3166 2.235402 TCCTACGGTTTCACCAAGATCC 59.765 50.000 0.00 0.00 38.47 3.36
3055 3167 2.027561 CCTACGGTTTCACCAAGATCCA 60.028 50.000 0.00 0.00 38.47 3.41
3056 3168 2.879103 ACGGTTTCACCAAGATCCAT 57.121 45.000 0.00 0.00 38.47 3.41
3057 3169 2.711542 ACGGTTTCACCAAGATCCATC 58.288 47.619 0.00 0.00 38.47 3.51
3058 3170 2.305927 ACGGTTTCACCAAGATCCATCT 59.694 45.455 0.00 0.00 38.47 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.457455 ACCCCAACCTTGCCACTTG 60.457 57.895 0.00 0.00 0.00 3.16
1 2 1.152546 GACCCCAACCTTGCCACTT 60.153 57.895 0.00 0.00 0.00 3.16
2 3 2.069165 GAGACCCCAACCTTGCCACT 62.069 60.000 0.00 0.00 0.00 4.00
3 4 1.603739 GAGACCCCAACCTTGCCAC 60.604 63.158 0.00 0.00 0.00 5.01
4 5 2.067932 CTGAGACCCCAACCTTGCCA 62.068 60.000 0.00 0.00 0.00 4.92
5 6 1.303643 CTGAGACCCCAACCTTGCC 60.304 63.158 0.00 0.00 0.00 4.52
6 7 1.303643 CCTGAGACCCCAACCTTGC 60.304 63.158 0.00 0.00 0.00 4.01
8 9 0.104409 AGACCTGAGACCCCAACCTT 60.104 55.000 0.00 0.00 0.00 3.50
9 10 0.104409 AAGACCTGAGACCCCAACCT 60.104 55.000 0.00 0.00 0.00 3.50
10 11 1.555533 CTAAGACCTGAGACCCCAACC 59.444 57.143 0.00 0.00 0.00 3.77
11 12 2.537143 TCTAAGACCTGAGACCCCAAC 58.463 52.381 0.00 0.00 0.00 3.77
12 13 3.107601 CATCTAAGACCTGAGACCCCAA 58.892 50.000 0.00 0.00 0.00 4.12
13 14 2.044492 ACATCTAAGACCTGAGACCCCA 59.956 50.000 0.00 0.00 0.00 4.96
14 15 2.753247 ACATCTAAGACCTGAGACCCC 58.247 52.381 0.00 0.00 0.00 4.95
15 16 4.342665 CCTAACATCTAAGACCTGAGACCC 59.657 50.000 0.00 0.00 0.00 4.46
16 17 4.202172 GCCTAACATCTAAGACCTGAGACC 60.202 50.000 0.00 0.00 0.00 3.85
17 18 4.647399 AGCCTAACATCTAAGACCTGAGAC 59.353 45.833 0.00 0.00 0.00 3.36
18 19 4.873010 AGCCTAACATCTAAGACCTGAGA 58.127 43.478 0.00 0.00 0.00 3.27
19 20 5.355596 CAAGCCTAACATCTAAGACCTGAG 58.644 45.833 0.00 0.00 0.00 3.35
20 21 4.162320 CCAAGCCTAACATCTAAGACCTGA 59.838 45.833 0.00 0.00 0.00 3.86
21 22 4.446371 CCAAGCCTAACATCTAAGACCTG 58.554 47.826 0.00 0.00 0.00 4.00
22 23 3.456277 CCCAAGCCTAACATCTAAGACCT 59.544 47.826 0.00 0.00 0.00 3.85
23 24 3.200165 ACCCAAGCCTAACATCTAAGACC 59.800 47.826 0.00 0.00 0.00 3.85
24 25 4.192317 CACCCAAGCCTAACATCTAAGAC 58.808 47.826 0.00 0.00 0.00 3.01
25 26 3.844211 ACACCCAAGCCTAACATCTAAGA 59.156 43.478 0.00 0.00 0.00 2.10
26 27 3.941483 CACACCCAAGCCTAACATCTAAG 59.059 47.826 0.00 0.00 0.00 2.18
27 28 3.585289 TCACACCCAAGCCTAACATCTAA 59.415 43.478 0.00 0.00 0.00 2.10
28 29 3.178046 TCACACCCAAGCCTAACATCTA 58.822 45.455 0.00 0.00 0.00 1.98
29 30 1.985159 TCACACCCAAGCCTAACATCT 59.015 47.619 0.00 0.00 0.00 2.90
30 31 2.489938 TCACACCCAAGCCTAACATC 57.510 50.000 0.00 0.00 0.00 3.06
31 32 2.041620 ACATCACACCCAAGCCTAACAT 59.958 45.455 0.00 0.00 0.00 2.71
32 33 1.423541 ACATCACACCCAAGCCTAACA 59.576 47.619 0.00 0.00 0.00 2.41
33 34 2.084546 GACATCACACCCAAGCCTAAC 58.915 52.381 0.00 0.00 0.00 2.34
34 35 1.985159 AGACATCACACCCAAGCCTAA 59.015 47.619 0.00 0.00 0.00 2.69
35 36 1.278985 CAGACATCACACCCAAGCCTA 59.721 52.381 0.00 0.00 0.00 3.93
36 37 0.037303 CAGACATCACACCCAAGCCT 59.963 55.000 0.00 0.00 0.00 4.58
37 38 0.250901 ACAGACATCACACCCAAGCC 60.251 55.000 0.00 0.00 0.00 4.35
38 39 1.609208 AACAGACATCACACCCAAGC 58.391 50.000 0.00 0.00 0.00 4.01
39 40 2.294233 CCAAACAGACATCACACCCAAG 59.706 50.000 0.00 0.00 0.00 3.61
40 41 2.305928 CCAAACAGACATCACACCCAA 58.694 47.619 0.00 0.00 0.00 4.12
41 42 1.214175 ACCAAACAGACATCACACCCA 59.786 47.619 0.00 0.00 0.00 4.51
42 43 1.981256 ACCAAACAGACATCACACCC 58.019 50.000 0.00 0.00 0.00 4.61
43 44 5.354234 CCTAATACCAAACAGACATCACACC 59.646 44.000 0.00 0.00 0.00 4.16
44 45 5.163754 GCCTAATACCAAACAGACATCACAC 60.164 44.000 0.00 0.00 0.00 3.82
45 46 4.941263 GCCTAATACCAAACAGACATCACA 59.059 41.667 0.00 0.00 0.00 3.58
46 47 4.335594 GGCCTAATACCAAACAGACATCAC 59.664 45.833 0.00 0.00 0.00 3.06
47 48 4.523083 GGCCTAATACCAAACAGACATCA 58.477 43.478 0.00 0.00 0.00 3.07
48 49 3.883489 GGGCCTAATACCAAACAGACATC 59.117 47.826 0.84 0.00 0.00 3.06
49 50 3.268334 TGGGCCTAATACCAAACAGACAT 59.732 43.478 4.53 0.00 32.89 3.06
50 51 2.645297 TGGGCCTAATACCAAACAGACA 59.355 45.455 4.53 0.00 32.89 3.41
51 52 3.279434 CTGGGCCTAATACCAAACAGAC 58.721 50.000 4.53 0.00 36.09 3.51
52 53 2.241176 CCTGGGCCTAATACCAAACAGA 59.759 50.000 4.53 0.00 36.09 3.41
53 54 2.654863 CCTGGGCCTAATACCAAACAG 58.345 52.381 4.53 0.00 36.09 3.16
54 55 1.341581 GCCTGGGCCTAATACCAAACA 60.342 52.381 4.53 0.00 36.09 2.83
55 56 1.063942 AGCCTGGGCCTAATACCAAAC 60.064 52.381 4.53 0.00 43.17 2.93
56 57 1.304891 AGCCTGGGCCTAATACCAAA 58.695 50.000 4.53 0.00 43.17 3.28
57 58 2.199927 TAGCCTGGGCCTAATACCAA 57.800 50.000 4.53 0.00 43.17 3.67
58 59 1.985159 CATAGCCTGGGCCTAATACCA 59.015 52.381 4.53 0.00 43.17 3.25
59 60 1.985895 ACATAGCCTGGGCCTAATACC 59.014 52.381 4.53 0.00 43.17 2.73
60 61 3.059352 CACATAGCCTGGGCCTAATAC 57.941 52.381 4.53 0.00 43.17 1.89
68 69 0.184451 AAGGATGCACATAGCCTGGG 59.816 55.000 0.00 0.00 44.83 4.45
69 70 2.062971 AAAGGATGCACATAGCCTGG 57.937 50.000 0.00 0.00 44.83 4.45
70 71 4.392047 TGATAAAGGATGCACATAGCCTG 58.608 43.478 0.00 0.00 44.83 4.85
71 72 4.712051 TGATAAAGGATGCACATAGCCT 57.288 40.909 0.00 0.00 44.83 4.58
72 73 4.823989 AGTTGATAAAGGATGCACATAGCC 59.176 41.667 0.00 0.00 44.83 3.93
73 74 5.278169 CCAGTTGATAAAGGATGCACATAGC 60.278 44.000 0.00 0.00 45.96 2.97
74 75 6.057533 TCCAGTTGATAAAGGATGCACATAG 58.942 40.000 0.00 0.00 0.00 2.23
75 76 6.000246 TCCAGTTGATAAAGGATGCACATA 58.000 37.500 0.00 0.00 0.00 2.29
76 77 4.858850 TCCAGTTGATAAAGGATGCACAT 58.141 39.130 0.00 0.00 0.00 3.21
77 78 4.299586 TCCAGTTGATAAAGGATGCACA 57.700 40.909 0.00 0.00 0.00 4.57
78 79 5.471456 CCTATCCAGTTGATAAAGGATGCAC 59.529 44.000 0.00 0.00 40.86 4.57
79 80 5.132648 ACCTATCCAGTTGATAAAGGATGCA 59.867 40.000 0.00 0.00 40.86 3.96
80 81 5.471456 CACCTATCCAGTTGATAAAGGATGC 59.529 44.000 0.00 0.00 40.86 3.91
81 82 6.595682 ACACCTATCCAGTTGATAAAGGATG 58.404 40.000 0.00 0.00 40.86 3.51
82 83 6.831664 ACACCTATCCAGTTGATAAAGGAT 57.168 37.500 0.00 0.00 43.07 3.24
83 84 6.183360 GCTACACCTATCCAGTTGATAAAGGA 60.183 42.308 1.00 0.00 35.53 3.36
84 85 5.992217 GCTACACCTATCCAGTTGATAAAGG 59.008 44.000 0.00 0.00 35.53 3.11
85 86 5.692204 CGCTACACCTATCCAGTTGATAAAG 59.308 44.000 0.00 0.00 35.53 1.85
86 87 5.361571 TCGCTACACCTATCCAGTTGATAAA 59.638 40.000 0.00 0.00 35.53 1.40
87 88 4.891168 TCGCTACACCTATCCAGTTGATAA 59.109 41.667 0.00 0.00 35.53 1.75
88 89 4.277672 GTCGCTACACCTATCCAGTTGATA 59.722 45.833 0.00 0.00 34.76 2.15
89 90 3.068307 GTCGCTACACCTATCCAGTTGAT 59.932 47.826 0.00 0.00 37.49 2.57
90 91 2.426024 GTCGCTACACCTATCCAGTTGA 59.574 50.000 0.00 0.00 0.00 3.18
91 92 2.165641 TGTCGCTACACCTATCCAGTTG 59.834 50.000 0.00 0.00 0.00 3.16
92 93 2.427453 CTGTCGCTACACCTATCCAGTT 59.573 50.000 0.00 0.00 0.00 3.16
93 94 2.025155 CTGTCGCTACACCTATCCAGT 58.975 52.381 0.00 0.00 0.00 4.00
94 95 2.025155 ACTGTCGCTACACCTATCCAG 58.975 52.381 0.00 0.00 0.00 3.86
95 96 2.139323 ACTGTCGCTACACCTATCCA 57.861 50.000 0.00 0.00 0.00 3.41
96 97 3.187700 CAAACTGTCGCTACACCTATCC 58.812 50.000 0.00 0.00 0.00 2.59
97 98 3.846360 ACAAACTGTCGCTACACCTATC 58.154 45.455 0.00 0.00 0.00 2.08
98 99 3.955650 ACAAACTGTCGCTACACCTAT 57.044 42.857 0.00 0.00 0.00 2.57
99 100 3.386486 CAACAAACTGTCGCTACACCTA 58.614 45.455 0.00 0.00 0.00 3.08
100 101 2.210116 CAACAAACTGTCGCTACACCT 58.790 47.619 0.00 0.00 0.00 4.00
101 102 1.333791 GCAACAAACTGTCGCTACACC 60.334 52.381 0.00 0.00 25.48 4.16
102 103 1.597663 AGCAACAAACTGTCGCTACAC 59.402 47.619 0.00 0.00 39.13 2.90
103 104 1.948104 AGCAACAAACTGTCGCTACA 58.052 45.000 0.00 0.00 39.13 2.74
104 105 3.739300 TCTAAGCAACAAACTGTCGCTAC 59.261 43.478 0.00 0.00 40.17 3.58
105 106 3.739300 GTCTAAGCAACAAACTGTCGCTA 59.261 43.478 0.00 0.00 40.17 4.26
106 107 2.544267 GTCTAAGCAACAAACTGTCGCT 59.456 45.455 0.00 0.00 43.41 4.93
107 108 2.659291 CGTCTAAGCAACAAACTGTCGC 60.659 50.000 0.00 0.00 28.57 5.19
108 109 2.792674 TCGTCTAAGCAACAAACTGTCG 59.207 45.455 0.00 0.00 0.00 4.35
109 110 3.361724 CGTCGTCTAAGCAACAAACTGTC 60.362 47.826 0.00 0.00 0.00 3.51
110 111 2.538449 CGTCGTCTAAGCAACAAACTGT 59.462 45.455 0.00 0.00 0.00 3.55
111 112 2.096909 CCGTCGTCTAAGCAACAAACTG 60.097 50.000 0.00 0.00 0.00 3.16
112 113 2.132762 CCGTCGTCTAAGCAACAAACT 58.867 47.619 0.00 0.00 0.00 2.66
113 114 1.398071 GCCGTCGTCTAAGCAACAAAC 60.398 52.381 0.00 0.00 0.00 2.93
114 115 0.863144 GCCGTCGTCTAAGCAACAAA 59.137 50.000 0.00 0.00 0.00 2.83
115 116 0.032952 AGCCGTCGTCTAAGCAACAA 59.967 50.000 0.00 0.00 0.00 2.83
116 117 0.032952 AAGCCGTCGTCTAAGCAACA 59.967 50.000 0.00 0.00 0.00 3.33
117 118 1.145803 AAAGCCGTCGTCTAAGCAAC 58.854 50.000 0.00 0.00 0.00 4.17
118 119 2.029649 ACTAAAGCCGTCGTCTAAGCAA 60.030 45.455 0.00 0.00 0.00 3.91
119 120 1.542915 ACTAAAGCCGTCGTCTAAGCA 59.457 47.619 0.00 0.00 0.00 3.91
120 121 2.274920 ACTAAAGCCGTCGTCTAAGC 57.725 50.000 0.00 0.00 0.00 3.09
121 122 5.860716 AGTAAAACTAAAGCCGTCGTCTAAG 59.139 40.000 0.00 0.00 0.00 2.18
122 123 5.772521 AGTAAAACTAAAGCCGTCGTCTAA 58.227 37.500 0.00 0.00 0.00 2.10
123 124 5.376854 AGTAAAACTAAAGCCGTCGTCTA 57.623 39.130 0.00 0.00 0.00 2.59
124 125 4.248691 AGTAAAACTAAAGCCGTCGTCT 57.751 40.909 0.00 0.00 0.00 4.18
125 126 6.089954 ACAATAGTAAAACTAAAGCCGTCGTC 59.910 38.462 0.00 0.00 33.89 4.20
126 127 5.928264 ACAATAGTAAAACTAAAGCCGTCGT 59.072 36.000 0.00 0.00 33.89 4.34
127 128 6.399204 ACAATAGTAAAACTAAAGCCGTCG 57.601 37.500 0.00 0.00 33.89 5.12
128 129 9.090692 TCATACAATAGTAAAACTAAAGCCGTC 57.909 33.333 0.00 0.00 33.89 4.79
129 130 8.876790 GTCATACAATAGTAAAACTAAAGCCGT 58.123 33.333 0.00 0.00 33.89 5.68
130 131 9.095065 AGTCATACAATAGTAAAACTAAAGCCG 57.905 33.333 0.00 0.00 33.89 5.52
143 144 9.436957 CAAGACCTTACAAAGTCATACAATAGT 57.563 33.333 0.00 0.00 0.00 2.12
144 145 9.436957 ACAAGACCTTACAAAGTCATACAATAG 57.563 33.333 0.00 0.00 0.00 1.73
145 146 9.214957 CACAAGACCTTACAAAGTCATACAATA 57.785 33.333 0.00 0.00 0.00 1.90
146 147 7.936847 TCACAAGACCTTACAAAGTCATACAAT 59.063 33.333 0.00 0.00 0.00 2.71
147 148 7.276658 TCACAAGACCTTACAAAGTCATACAA 58.723 34.615 0.00 0.00 0.00 2.41
148 149 6.822442 TCACAAGACCTTACAAAGTCATACA 58.178 36.000 0.00 0.00 0.00 2.29
149 150 7.152645 TCTCACAAGACCTTACAAAGTCATAC 58.847 38.462 0.00 0.00 0.00 2.39
150 151 7.297936 TCTCACAAGACCTTACAAAGTCATA 57.702 36.000 0.00 0.00 0.00 2.15
151 152 6.174720 TCTCACAAGACCTTACAAAGTCAT 57.825 37.500 0.00 0.00 0.00 3.06
152 153 5.607939 TCTCACAAGACCTTACAAAGTCA 57.392 39.130 0.00 0.00 0.00 3.41
153 154 8.603242 TTATTCTCACAAGACCTTACAAAGTC 57.397 34.615 0.00 0.00 0.00 3.01
154 155 9.574516 AATTATTCTCACAAGACCTTACAAAGT 57.425 29.630 0.00 0.00 0.00 2.66
177 178 9.950680 CTTCTGCATACGACCATTTTATTAATT 57.049 29.630 0.00 0.00 0.00 1.40
178 179 9.120538 ACTTCTGCATACGACCATTTTATTAAT 57.879 29.630 0.00 0.00 0.00 1.40
179 180 8.500753 ACTTCTGCATACGACCATTTTATTAA 57.499 30.769 0.00 0.00 0.00 1.40
180 181 9.256477 CTACTTCTGCATACGACCATTTTATTA 57.744 33.333 0.00 0.00 0.00 0.98
181 182 7.254795 GCTACTTCTGCATACGACCATTTTATT 60.255 37.037 0.00 0.00 0.00 1.40
182 183 6.202954 GCTACTTCTGCATACGACCATTTTAT 59.797 38.462 0.00 0.00 0.00 1.40
183 184 5.522460 GCTACTTCTGCATACGACCATTTTA 59.478 40.000 0.00 0.00 0.00 1.52
184 185 4.332819 GCTACTTCTGCATACGACCATTTT 59.667 41.667 0.00 0.00 0.00 1.82
185 186 3.871594 GCTACTTCTGCATACGACCATTT 59.128 43.478 0.00 0.00 0.00 2.32
186 187 3.118775 TGCTACTTCTGCATACGACCATT 60.119 43.478 0.00 0.00 35.31 3.16
187 188 2.430694 TGCTACTTCTGCATACGACCAT 59.569 45.455 0.00 0.00 35.31 3.55
188 189 1.822371 TGCTACTTCTGCATACGACCA 59.178 47.619 0.00 0.00 35.31 4.02
189 190 2.579207 TGCTACTTCTGCATACGACC 57.421 50.000 0.00 0.00 35.31 4.79
196 197 0.460811 CCGCTGATGCTACTTCTGCA 60.461 55.000 11.12 0.00 44.95 4.41
197 198 0.179100 TCCGCTGATGCTACTTCTGC 60.179 55.000 0.00 0.00 36.97 4.26
198 199 1.406898 TCTCCGCTGATGCTACTTCTG 59.593 52.381 0.00 0.00 36.97 3.02
199 200 1.769026 TCTCCGCTGATGCTACTTCT 58.231 50.000 0.00 0.00 36.97 2.85
200 201 2.402305 CATCTCCGCTGATGCTACTTC 58.598 52.381 3.56 0.00 37.59 3.01
201 202 1.069823 CCATCTCCGCTGATGCTACTT 59.930 52.381 9.47 0.00 41.65 2.24
202 203 0.678395 CCATCTCCGCTGATGCTACT 59.322 55.000 9.47 0.00 41.65 2.57
203 204 0.676184 TCCATCTCCGCTGATGCTAC 59.324 55.000 9.47 0.00 41.65 3.58
204 205 0.964700 CTCCATCTCCGCTGATGCTA 59.035 55.000 9.47 1.66 41.65 3.49
205 206 0.758310 TCTCCATCTCCGCTGATGCT 60.758 55.000 9.47 0.00 41.65 3.79
206 207 0.105593 TTCTCCATCTCCGCTGATGC 59.894 55.000 9.47 0.00 41.65 3.91
207 208 1.137675 TGTTCTCCATCTCCGCTGATG 59.862 52.381 8.36 8.36 42.38 3.07
208 209 1.489481 TGTTCTCCATCTCCGCTGAT 58.511 50.000 0.00 0.00 0.00 2.90
209 210 1.137675 CATGTTCTCCATCTCCGCTGA 59.862 52.381 0.00 0.00 0.00 4.26
210 211 1.579698 CATGTTCTCCATCTCCGCTG 58.420 55.000 0.00 0.00 0.00 5.18
211 212 0.179062 GCATGTTCTCCATCTCCGCT 60.179 55.000 0.00 0.00 0.00 5.52
212 213 1.493950 CGCATGTTCTCCATCTCCGC 61.494 60.000 0.00 0.00 0.00 5.54
213 214 0.103026 TCGCATGTTCTCCATCTCCG 59.897 55.000 0.00 0.00 0.00 4.63
214 215 1.410517 TCTCGCATGTTCTCCATCTCC 59.589 52.381 0.00 0.00 0.00 3.71
215 216 2.879002 TCTCGCATGTTCTCCATCTC 57.121 50.000 0.00 0.00 0.00 2.75
216 217 3.616956 TTTCTCGCATGTTCTCCATCT 57.383 42.857 0.00 0.00 0.00 2.90
217 218 4.889832 AATTTCTCGCATGTTCTCCATC 57.110 40.909 0.00 0.00 0.00 3.51
218 219 5.882557 AGTAAATTTCTCGCATGTTCTCCAT 59.117 36.000 0.00 0.00 0.00 3.41
219 220 5.245531 AGTAAATTTCTCGCATGTTCTCCA 58.754 37.500 0.00 0.00 0.00 3.86
220 221 5.803020 AGTAAATTTCTCGCATGTTCTCC 57.197 39.130 0.00 0.00 0.00 3.71
221 222 7.757097 TCTAGTAAATTTCTCGCATGTTCTC 57.243 36.000 0.00 0.00 0.00 2.87
222 223 8.443937 GTTTCTAGTAAATTTCTCGCATGTTCT 58.556 33.333 0.00 0.00 0.00 3.01
223 224 7.692705 GGTTTCTAGTAAATTTCTCGCATGTTC 59.307 37.037 0.00 0.00 0.00 3.18
224 225 7.174253 TGGTTTCTAGTAAATTTCTCGCATGTT 59.826 33.333 0.00 0.00 0.00 2.71
225 226 6.653320 TGGTTTCTAGTAAATTTCTCGCATGT 59.347 34.615 0.00 0.00 0.00 3.21
226 227 6.961554 GTGGTTTCTAGTAAATTTCTCGCATG 59.038 38.462 0.00 0.00 0.00 4.06
227 228 6.653320 TGTGGTTTCTAGTAAATTTCTCGCAT 59.347 34.615 0.00 0.00 0.00 4.73
228 229 5.992829 TGTGGTTTCTAGTAAATTTCTCGCA 59.007 36.000 0.00 0.00 0.00 5.10
229 230 6.476243 TGTGGTTTCTAGTAAATTTCTCGC 57.524 37.500 0.00 0.00 0.00 5.03
230 231 7.007697 CGTTGTGGTTTCTAGTAAATTTCTCG 58.992 38.462 0.00 0.00 0.00 4.04
231 232 8.008279 GTCGTTGTGGTTTCTAGTAAATTTCTC 58.992 37.037 0.00 0.00 0.00 2.87
232 233 7.713942 AGTCGTTGTGGTTTCTAGTAAATTTCT 59.286 33.333 0.00 0.00 0.00 2.52
233 234 7.858583 AGTCGTTGTGGTTTCTAGTAAATTTC 58.141 34.615 0.00 0.00 0.00 2.17
234 235 7.041576 GGAGTCGTTGTGGTTTCTAGTAAATTT 60.042 37.037 0.00 0.00 0.00 1.82
235 236 6.426025 GGAGTCGTTGTGGTTTCTAGTAAATT 59.574 38.462 0.00 0.00 0.00 1.82
236 237 5.930569 GGAGTCGTTGTGGTTTCTAGTAAAT 59.069 40.000 0.00 0.00 0.00 1.40
237 238 5.069516 AGGAGTCGTTGTGGTTTCTAGTAAA 59.930 40.000 0.00 0.00 0.00 2.01
238 239 4.586001 AGGAGTCGTTGTGGTTTCTAGTAA 59.414 41.667 0.00 0.00 0.00 2.24
239 240 4.022589 CAGGAGTCGTTGTGGTTTCTAGTA 60.023 45.833 0.00 0.00 0.00 1.82
240 241 2.963782 AGGAGTCGTTGTGGTTTCTAGT 59.036 45.455 0.00 0.00 0.00 2.57
241 242 3.005472 TCAGGAGTCGTTGTGGTTTCTAG 59.995 47.826 0.00 0.00 0.00 2.43
242 243 2.960384 TCAGGAGTCGTTGTGGTTTCTA 59.040 45.455 0.00 0.00 0.00 2.10
243 244 1.760613 TCAGGAGTCGTTGTGGTTTCT 59.239 47.619 0.00 0.00 0.00 2.52
244 245 2.234300 TCAGGAGTCGTTGTGGTTTC 57.766 50.000 0.00 0.00 0.00 2.78
245 246 2.878406 CAATCAGGAGTCGTTGTGGTTT 59.122 45.455 0.00 0.00 0.00 3.27
246 247 2.104111 TCAATCAGGAGTCGTTGTGGTT 59.896 45.455 0.00 0.00 0.00 3.67
247 248 1.691976 TCAATCAGGAGTCGTTGTGGT 59.308 47.619 0.00 0.00 0.00 4.16
248 249 2.069273 GTCAATCAGGAGTCGTTGTGG 58.931 52.381 0.00 0.00 0.00 4.17
249 250 2.989840 GAGTCAATCAGGAGTCGTTGTG 59.010 50.000 0.00 0.00 0.00 3.33
250 251 3.305398 GAGTCAATCAGGAGTCGTTGT 57.695 47.619 0.00 0.00 0.00 3.32
255 256 3.191581 TGTTCTCGAGTCAATCAGGAGTC 59.808 47.826 13.13 0.00 34.55 3.36
256 257 3.157881 TGTTCTCGAGTCAATCAGGAGT 58.842 45.455 13.13 0.00 0.00 3.85
257 258 3.428725 CCTGTTCTCGAGTCAATCAGGAG 60.429 52.174 24.43 10.17 42.16 3.69
258 259 2.493675 CCTGTTCTCGAGTCAATCAGGA 59.506 50.000 24.43 0.99 42.16 3.86
259 260 2.493675 TCCTGTTCTCGAGTCAATCAGG 59.506 50.000 23.59 23.59 41.30 3.86
260 261 3.857549 TCCTGTTCTCGAGTCAATCAG 57.142 47.619 13.13 13.35 0.00 2.90
261 262 3.826729 TCTTCCTGTTCTCGAGTCAATCA 59.173 43.478 13.13 5.18 0.00 2.57
262 263 4.442375 TCTTCCTGTTCTCGAGTCAATC 57.558 45.455 13.13 0.76 0.00 2.67
263 264 4.282195 AGTTCTTCCTGTTCTCGAGTCAAT 59.718 41.667 13.13 0.00 0.00 2.57
264 265 3.637229 AGTTCTTCCTGTTCTCGAGTCAA 59.363 43.478 13.13 0.00 0.00 3.18
265 266 3.223435 AGTTCTTCCTGTTCTCGAGTCA 58.777 45.455 13.13 11.92 0.00 3.41
266 267 3.253677 TGAGTTCTTCCTGTTCTCGAGTC 59.746 47.826 13.13 7.80 0.00 3.36
267 268 3.223435 TGAGTTCTTCCTGTTCTCGAGT 58.777 45.455 13.13 0.00 0.00 4.18
268 269 3.924918 TGAGTTCTTCCTGTTCTCGAG 57.075 47.619 5.93 5.93 0.00 4.04
269 270 3.889538 TCTTGAGTTCTTCCTGTTCTCGA 59.110 43.478 0.00 0.00 0.00 4.04
270 271 4.244425 TCTTGAGTTCTTCCTGTTCTCG 57.756 45.455 0.00 0.00 0.00 4.04
271 272 4.934602 CCATCTTGAGTTCTTCCTGTTCTC 59.065 45.833 0.00 0.00 0.00 2.87
272 273 4.594920 TCCATCTTGAGTTCTTCCTGTTCT 59.405 41.667 0.00 0.00 0.00 3.01
273 274 4.693095 GTCCATCTTGAGTTCTTCCTGTTC 59.307 45.833 0.00 0.00 0.00 3.18
274 275 4.349342 AGTCCATCTTGAGTTCTTCCTGTT 59.651 41.667 0.00 0.00 0.00 3.16
275 276 3.906846 AGTCCATCTTGAGTTCTTCCTGT 59.093 43.478 0.00 0.00 0.00 4.00
276 277 4.502962 GAGTCCATCTTGAGTTCTTCCTG 58.497 47.826 0.00 0.00 0.00 3.86
277 278 3.194542 CGAGTCCATCTTGAGTTCTTCCT 59.805 47.826 0.00 0.00 0.00 3.36
278 279 3.516615 CGAGTCCATCTTGAGTTCTTCC 58.483 50.000 0.00 0.00 0.00 3.46
279 280 2.926838 GCGAGTCCATCTTGAGTTCTTC 59.073 50.000 0.00 0.00 0.00 2.87
280 281 2.300152 TGCGAGTCCATCTTGAGTTCTT 59.700 45.455 0.00 0.00 0.00 2.52
281 282 1.895798 TGCGAGTCCATCTTGAGTTCT 59.104 47.619 0.00 0.00 0.00 3.01
282 283 1.996191 GTGCGAGTCCATCTTGAGTTC 59.004 52.381 0.00 0.00 0.00 3.01
283 284 1.344438 TGTGCGAGTCCATCTTGAGTT 59.656 47.619 0.00 0.00 0.00 3.01
284 285 0.969149 TGTGCGAGTCCATCTTGAGT 59.031 50.000 0.00 0.00 0.00 3.41
285 286 2.084610 TTGTGCGAGTCCATCTTGAG 57.915 50.000 0.00 0.00 0.00 3.02
286 287 2.542020 TTTGTGCGAGTCCATCTTGA 57.458 45.000 0.00 0.00 0.00 3.02
287 288 3.837213 ATTTTGTGCGAGTCCATCTTG 57.163 42.857 0.00 0.00 0.00 3.02
288 289 5.957842 TTTATTTTGTGCGAGTCCATCTT 57.042 34.783 0.00 0.00 0.00 2.40
289 290 5.647658 TGATTTATTTTGTGCGAGTCCATCT 59.352 36.000 0.00 0.00 0.00 2.90
290 291 5.739161 GTGATTTATTTTGTGCGAGTCCATC 59.261 40.000 0.00 0.00 0.00 3.51
291 292 5.415701 AGTGATTTATTTTGTGCGAGTCCAT 59.584 36.000 0.00 0.00 0.00 3.41
292 293 4.759693 AGTGATTTATTTTGTGCGAGTCCA 59.240 37.500 0.00 0.00 0.00 4.02
293 294 5.088739 CAGTGATTTATTTTGTGCGAGTCC 58.911 41.667 0.00 0.00 0.00 3.85
294 295 5.927030 TCAGTGATTTATTTTGTGCGAGTC 58.073 37.500 0.00 0.00 0.00 3.36
295 296 5.940192 TCAGTGATTTATTTTGTGCGAGT 57.060 34.783 0.00 0.00 0.00 4.18
296 297 6.602179 TCTTCAGTGATTTATTTTGTGCGAG 58.398 36.000 0.00 0.00 0.00 5.03
297 298 6.552859 TCTTCAGTGATTTATTTTGTGCGA 57.447 33.333 0.00 0.00 0.00 5.10
298 299 8.894409 TTATCTTCAGTGATTTATTTTGTGCG 57.106 30.769 0.00 0.00 0.00 5.34
305 306 9.736023 GCCGAATTTTATCTTCAGTGATTTATT 57.264 29.630 0.00 0.00 0.00 1.40
306 307 8.070171 CGCCGAATTTTATCTTCAGTGATTTAT 58.930 33.333 0.00 0.00 0.00 1.40
307 308 7.406553 CGCCGAATTTTATCTTCAGTGATTTA 58.593 34.615 0.00 0.00 0.00 1.40
308 309 6.258160 CGCCGAATTTTATCTTCAGTGATTT 58.742 36.000 0.00 0.00 0.00 2.17
309 310 5.730568 GCGCCGAATTTTATCTTCAGTGATT 60.731 40.000 0.00 0.00 0.00 2.57
310 311 4.260784 GCGCCGAATTTTATCTTCAGTGAT 60.261 41.667 0.00 0.00 0.00 3.06
311 312 3.063452 GCGCCGAATTTTATCTTCAGTGA 59.937 43.478 0.00 0.00 0.00 3.41
312 313 3.354397 GCGCCGAATTTTATCTTCAGTG 58.646 45.455 0.00 0.00 0.00 3.66
313 314 2.354821 GGCGCCGAATTTTATCTTCAGT 59.645 45.455 12.58 0.00 0.00 3.41
314 315 2.599848 CGGCGCCGAATTTTATCTTCAG 60.600 50.000 44.86 7.86 42.83 3.02
315 316 1.329292 CGGCGCCGAATTTTATCTTCA 59.671 47.619 44.86 0.00 42.83 3.02
316 317 1.595794 TCGGCGCCGAATTTTATCTTC 59.404 47.619 46.56 4.56 46.01 2.87
317 318 1.658994 TCGGCGCCGAATTTTATCTT 58.341 45.000 46.56 0.00 46.01 2.40
318 319 3.372795 TCGGCGCCGAATTTTATCT 57.627 47.368 46.56 0.00 46.01 1.98
327 328 3.496131 GATTTTGCTCGGCGCCGA 61.496 61.111 45.07 45.07 46.87 5.54
328 329 2.794627 TTTGATTTTGCTCGGCGCCG 62.795 55.000 42.13 42.13 38.05 6.46
329 330 0.665972 TTTTGATTTTGCTCGGCGCC 60.666 50.000 19.07 19.07 38.05 6.53
330 331 1.059549 CATTTTGATTTTGCTCGGCGC 59.940 47.619 0.00 0.00 39.77 6.53
331 332 1.059549 GCATTTTGATTTTGCTCGGCG 59.940 47.619 0.00 0.00 33.61 6.46
332 333 2.067766 TGCATTTTGATTTTGCTCGGC 58.932 42.857 0.00 0.00 37.28 5.54
333 334 3.680937 ACATGCATTTTGATTTTGCTCGG 59.319 39.130 0.00 0.00 37.28 4.63
334 335 4.434989 CCACATGCATTTTGATTTTGCTCG 60.435 41.667 0.00 0.00 37.28 5.03
335 336 4.142773 CCCACATGCATTTTGATTTTGCTC 60.143 41.667 0.00 0.00 37.28 4.26
336 337 3.754323 CCCACATGCATTTTGATTTTGCT 59.246 39.130 0.00 0.00 37.28 3.91
337 338 3.752222 TCCCACATGCATTTTGATTTTGC 59.248 39.130 0.00 0.00 36.91 3.68
338 339 5.644206 TCATCCCACATGCATTTTGATTTTG 59.356 36.000 0.00 0.00 0.00 2.44
339 340 5.806818 TCATCCCACATGCATTTTGATTTT 58.193 33.333 0.00 0.00 0.00 1.82
340 341 5.423704 TCATCCCACATGCATTTTGATTT 57.576 34.783 0.00 0.00 0.00 2.17
341 342 4.682320 GCTCATCCCACATGCATTTTGATT 60.682 41.667 0.00 0.00 0.00 2.57
342 343 3.181469 GCTCATCCCACATGCATTTTGAT 60.181 43.478 0.00 0.00 0.00 2.57
343 344 2.166870 GCTCATCCCACATGCATTTTGA 59.833 45.455 0.00 0.00 0.00 2.69
344 345 2.167693 AGCTCATCCCACATGCATTTTG 59.832 45.455 0.00 0.00 0.00 2.44
345 346 2.429610 GAGCTCATCCCACATGCATTTT 59.570 45.455 9.40 0.00 0.00 1.82
346 347 2.029623 GAGCTCATCCCACATGCATTT 58.970 47.619 9.40 0.00 0.00 2.32
347 348 1.688772 GAGCTCATCCCACATGCATT 58.311 50.000 9.40 0.00 0.00 3.56
348 349 0.178998 GGAGCTCATCCCACATGCAT 60.179 55.000 17.19 0.00 43.01 3.96
349 350 1.225426 GGAGCTCATCCCACATGCA 59.775 57.895 17.19 0.00 43.01 3.96
350 351 4.154296 GGAGCTCATCCCACATGC 57.846 61.111 17.19 0.00 43.01 4.06
489 515 4.544689 CGAGCCGAGTCGAGCCTG 62.545 72.222 15.64 7.31 42.85 4.85
497 523 3.461773 CATGACCCCGAGCCGAGT 61.462 66.667 0.00 0.00 0.00 4.18
508 534 2.046285 CCCTTCCCAACGCATGACC 61.046 63.158 0.00 0.00 0.00 4.02
532 558 3.898627 CTTGCACGGACGCGAGAGT 62.899 63.158 15.93 6.16 44.92 3.24
618 656 3.984749 GAGAGATCTCCGCGGGGC 61.985 72.222 27.83 10.43 37.02 5.80
626 664 1.040339 ACAGCCGTGGGAGAGATCTC 61.040 60.000 15.29 15.29 42.14 2.75
723 764 3.782244 GTGCAGCAGCCGAAGACG 61.782 66.667 0.00 0.00 41.13 4.18
724 765 3.426568 GGTGCAGCAGCCGAAGAC 61.427 66.667 14.00 0.00 41.13 3.01
823 864 1.690633 CCTAGAAGCTGGGGGCAGA 60.691 63.158 0.00 0.00 44.79 4.26
863 904 4.374702 CGTGCACGCAGCCTTCAC 62.375 66.667 28.16 0.00 44.83 3.18
891 932 1.887242 GCAGTTGTCGACACAGGCA 60.887 57.895 19.90 0.00 32.71 4.75
926 967 2.759795 GGCAAGAACAGGGGAGCT 59.240 61.111 0.00 0.00 0.00 4.09
984 1026 2.120909 CATGTCGTCCCCATTGGCC 61.121 63.158 0.00 0.00 0.00 5.36
986 1028 1.453745 CCCATGTCGTCCCCATTGG 60.454 63.158 0.00 0.00 0.00 3.16
1045 1103 1.303888 CAGCAGAGGCCCACAACAT 60.304 57.895 0.00 0.00 42.56 2.71
1059 1117 1.444383 GTCATCGTCGTCAGCAGCA 60.444 57.895 0.00 0.00 0.00 4.41
1131 1198 1.920325 CCCTCCAGAGTCAAGGGCA 60.920 63.158 11.17 0.00 43.21 5.36
1181 1249 4.284550 GCACCTCCTGCCAACCCA 62.285 66.667 0.00 0.00 40.42 4.51
1223 1294 0.457853 CGAGGAAGGCGACGAATTCA 60.458 55.000 6.22 0.00 0.00 2.57
1391 1462 1.000717 GAGAGCTTAGAGGACGCCATC 60.001 57.143 0.00 0.00 0.00 3.51
1410 1481 0.321919 GCACATCAGTTCCTGGCAGA 60.322 55.000 17.94 0.00 31.51 4.26
1417 1488 0.674895 AAGAGCGGCACATCAGTTCC 60.675 55.000 1.45 0.00 0.00 3.62
1419 1490 0.250467 ACAAGAGCGGCACATCAGTT 60.250 50.000 1.45 0.00 0.00 3.16
1421 1492 1.690283 CGACAAGAGCGGCACATCAG 61.690 60.000 1.45 0.00 0.00 2.90
1478 1549 0.390860 GGATGTCATCGGACCCTCAG 59.609 60.000 6.74 0.00 43.65 3.35
1514 1585 1.597854 CAAGACCCACGCTGAAGCA 60.598 57.895 2.79 0.00 42.21 3.91
1574 1645 0.321919 GGACTGCAACATGAGCTCCA 60.322 55.000 12.15 0.00 0.00 3.86
1855 1935 2.434884 CACGGCAATGGACTCGCT 60.435 61.111 0.00 0.00 0.00 4.93
1925 2005 6.151648 CACCTTCATATGTTCCACTGACAAAT 59.848 38.462 1.90 0.00 0.00 2.32
1984 2064 1.605710 CTGCTCACTTGACAAAGGTGG 59.394 52.381 7.50 1.57 37.76 4.61
2075 2155 0.940126 GGCCATGTCAATAGCACGAG 59.060 55.000 0.00 0.00 0.00 4.18
2081 2162 6.096705 TCAAAATACCAAGGCCATGTCAATAG 59.903 38.462 5.01 0.00 0.00 1.73
2085 2166 3.763360 CTCAAAATACCAAGGCCATGTCA 59.237 43.478 5.01 0.00 0.00 3.58
2089 2170 4.046286 TGACTCAAAATACCAAGGCCAT 57.954 40.909 5.01 0.00 0.00 4.40
2117 2198 2.047213 AACCCCGAGCAAGAAACCGA 62.047 55.000 0.00 0.00 0.00 4.69
2120 2202 2.254471 GGAACCCCGAGCAAGAAAC 58.746 57.895 0.00 0.00 0.00 2.78
2186 2269 2.887360 GTAGACGGCCGCCAAGTA 59.113 61.111 28.58 6.75 0.00 2.24
2216 2300 5.150683 CAAACAAACTCACTCAACACGAAA 58.849 37.500 0.00 0.00 0.00 3.46
2337 2427 1.442769 GTTCTTGAGATGGCGCTGAA 58.557 50.000 7.64 0.00 0.00 3.02
2339 2429 1.372087 GGGTTCTTGAGATGGCGCTG 61.372 60.000 7.64 0.00 0.00 5.18
2340 2430 1.078143 GGGTTCTTGAGATGGCGCT 60.078 57.895 7.64 0.00 0.00 5.92
2341 2431 0.749454 ATGGGTTCTTGAGATGGCGC 60.749 55.000 0.00 0.00 0.00 6.53
2342 2432 1.019673 CATGGGTTCTTGAGATGGCG 58.980 55.000 0.00 0.00 0.00 5.69
2343 2433 2.425143 TCATGGGTTCTTGAGATGGC 57.575 50.000 0.00 0.00 0.00 4.40
2344 2434 7.408756 TTTTATTCATGGGTTCTTGAGATGG 57.591 36.000 0.00 0.00 0.00 3.51
2345 2435 7.977853 CCTTTTTATTCATGGGTTCTTGAGATG 59.022 37.037 0.00 0.00 0.00 2.90
2346 2436 7.895429 TCCTTTTTATTCATGGGTTCTTGAGAT 59.105 33.333 0.00 0.00 0.00 2.75
2347 2437 7.237982 TCCTTTTTATTCATGGGTTCTTGAGA 58.762 34.615 0.00 0.00 0.00 3.27
2352 2442 7.309194 CGTTCTTCCTTTTTATTCATGGGTTCT 60.309 37.037 0.00 0.00 0.00 3.01
2368 2458 5.104485 AGCCTTTATATGGTCGTTCTTCCTT 60.104 40.000 0.00 0.00 0.00 3.36
2369 2459 4.409247 AGCCTTTATATGGTCGTTCTTCCT 59.591 41.667 0.00 0.00 0.00 3.36
2371 2461 5.927115 CCTAGCCTTTATATGGTCGTTCTTC 59.073 44.000 0.00 0.00 0.00 2.87
2373 2463 4.283722 CCCTAGCCTTTATATGGTCGTTCT 59.716 45.833 0.00 0.00 0.00 3.01
2374 2464 4.282703 TCCCTAGCCTTTATATGGTCGTTC 59.717 45.833 0.00 0.00 0.00 3.95
2376 2466 3.853207 TCCCTAGCCTTTATATGGTCGT 58.147 45.455 0.00 0.00 0.00 4.34
2377 2467 4.383118 CCATCCCTAGCCTTTATATGGTCG 60.383 50.000 0.00 0.00 0.00 4.79
2378 2468 4.783227 TCCATCCCTAGCCTTTATATGGTC 59.217 45.833 0.00 0.00 35.12 4.02
2379 2469 4.774779 TCCATCCCTAGCCTTTATATGGT 58.225 43.478 0.00 0.00 35.12 3.55
2382 2472 4.728860 CCCATCCATCCCTAGCCTTTATAT 59.271 45.833 0.00 0.00 0.00 0.86
2383 2473 4.111577 CCCATCCATCCCTAGCCTTTATA 58.888 47.826 0.00 0.00 0.00 0.98
2384 2474 2.922283 CCCATCCATCCCTAGCCTTTAT 59.078 50.000 0.00 0.00 0.00 1.40
2386 2476 1.152649 CCCATCCATCCCTAGCCTTT 58.847 55.000 0.00 0.00 0.00 3.11
2404 2494 6.206634 TGGAAAATCATGCCTAAATCGATACC 59.793 38.462 0.00 0.00 0.00 2.73
2405 2495 7.202016 TGGAAAATCATGCCTAAATCGATAC 57.798 36.000 0.00 0.00 0.00 2.24
2409 2499 5.916883 GTGATGGAAAATCATGCCTAAATCG 59.083 40.000 0.00 0.00 0.00 3.34
2410 2500 6.921857 CAGTGATGGAAAATCATGCCTAAATC 59.078 38.462 0.00 0.00 0.00 2.17
2417 2507 4.860907 GTGTTCAGTGATGGAAAATCATGC 59.139 41.667 0.00 0.00 0.00 4.06
2434 2524 5.692115 TCCTTGGCTATCATTAGTGTTCA 57.308 39.130 0.00 0.00 0.00 3.18
2438 2528 6.057533 TGTGATTCCTTGGCTATCATTAGTG 58.942 40.000 7.28 0.00 31.58 2.74
2441 2531 5.369404 TCCTGTGATTCCTTGGCTATCATTA 59.631 40.000 7.28 2.08 31.58 1.90
2442 2532 4.166725 TCCTGTGATTCCTTGGCTATCATT 59.833 41.667 7.28 0.00 31.58 2.57
2445 2535 3.845781 TCCTGTGATTCCTTGGCTATC 57.154 47.619 0.00 0.00 0.00 2.08
2460 2550 5.304101 TCTGTTGTGCCAATTTATTTCCTGT 59.696 36.000 0.00 0.00 0.00 4.00
2465 2555 7.278868 TCGTTTTTCTGTTGTGCCAATTTATTT 59.721 29.630 0.00 0.00 0.00 1.40
2467 2557 6.276847 TCGTTTTTCTGTTGTGCCAATTTAT 58.723 32.000 0.00 0.00 0.00 1.40
2468 2558 5.651530 TCGTTTTTCTGTTGTGCCAATTTA 58.348 33.333 0.00 0.00 0.00 1.40
2474 2564 5.332280 GCTTAATTCGTTTTTCTGTTGTGCC 60.332 40.000 0.00 0.00 0.00 5.01
2476 2566 6.804534 TGCTTAATTCGTTTTTCTGTTGTG 57.195 33.333 0.00 0.00 0.00 3.33
2492 2582 5.772825 TCTGCTGTTTGTTCTTGCTTAAT 57.227 34.783 0.00 0.00 0.00 1.40
2493 2583 5.532406 AGATCTGCTGTTTGTTCTTGCTTAA 59.468 36.000 0.00 0.00 0.00 1.85
2495 2585 3.887716 AGATCTGCTGTTTGTTCTTGCTT 59.112 39.130 0.00 0.00 0.00 3.91
2496 2586 3.484407 AGATCTGCTGTTTGTTCTTGCT 58.516 40.909 0.00 0.00 0.00 3.91
2502 2592 2.224281 TGGTCGAGATCTGCTGTTTGTT 60.224 45.455 0.00 0.00 0.00 2.83
2515 2605 2.549992 CCCAATCTTGTTGTGGTCGAGA 60.550 50.000 0.00 0.00 0.00 4.04
2519 2609 3.056607 CCATTCCCAATCTTGTTGTGGTC 60.057 47.826 0.00 0.00 0.00 4.02
2522 2612 4.605640 AACCATTCCCAATCTTGTTGTG 57.394 40.909 0.00 0.00 0.00 3.33
2524 2614 5.212532 TCAAACCATTCCCAATCTTGTTG 57.787 39.130 0.00 0.00 0.00 3.33
2526 2616 3.834231 CCTCAAACCATTCCCAATCTTGT 59.166 43.478 0.00 0.00 0.00 3.16
2531 2621 6.950860 ATAAAACCTCAAACCATTCCCAAT 57.049 33.333 0.00 0.00 0.00 3.16
2540 2630 9.411801 GAAATCTGAGAAATAAAACCTCAAACC 57.588 33.333 0.00 0.00 36.61 3.27
2581 2671 8.784043 GGCTTGTAACTCTAGAAATCTGAAAAA 58.216 33.333 0.00 0.00 0.00 1.94
2582 2672 8.157476 AGGCTTGTAACTCTAGAAATCTGAAAA 58.843 33.333 0.00 0.00 0.00 2.29
2583 2673 7.680730 AGGCTTGTAACTCTAGAAATCTGAAA 58.319 34.615 0.00 0.00 0.00 2.69
2584 2674 7.179338 AGAGGCTTGTAACTCTAGAAATCTGAA 59.821 37.037 0.00 0.00 42.00 3.02
2585 2675 6.665680 AGAGGCTTGTAACTCTAGAAATCTGA 59.334 38.462 0.00 0.00 42.00 3.27
2586 2676 6.872920 AGAGGCTTGTAACTCTAGAAATCTG 58.127 40.000 0.00 0.00 42.00 2.90
2587 2677 6.895204 AGAGAGGCTTGTAACTCTAGAAATCT 59.105 38.462 1.13 0.00 43.71 2.40
2588 2678 7.107639 AGAGAGGCTTGTAACTCTAGAAATC 57.892 40.000 1.13 0.00 43.71 2.17
2589 2679 6.665680 TGAGAGAGGCTTGTAACTCTAGAAAT 59.334 38.462 2.94 0.00 43.71 2.17
2590 2680 6.010850 TGAGAGAGGCTTGTAACTCTAGAAA 58.989 40.000 2.94 0.00 43.71 2.52
2591 2681 5.416326 GTGAGAGAGGCTTGTAACTCTAGAA 59.584 44.000 2.94 0.00 43.71 2.10
2592 2682 4.944930 GTGAGAGAGGCTTGTAACTCTAGA 59.055 45.833 2.94 0.00 43.71 2.43
2593 2683 4.702612 TGTGAGAGAGGCTTGTAACTCTAG 59.297 45.833 2.94 0.00 43.71 2.43
2594 2684 4.459685 GTGTGAGAGAGGCTTGTAACTCTA 59.540 45.833 2.94 0.00 43.71 2.43
2595 2685 3.257127 GTGTGAGAGAGGCTTGTAACTCT 59.743 47.826 2.58 2.58 46.18 3.24
2646 2736 2.983030 AGCCGCCGCACATTTGAA 60.983 55.556 0.00 0.00 37.52 2.69
2681 2776 1.522355 CCTTGCAGCCGTCGATGAT 60.522 57.895 6.11 0.00 0.00 2.45
2684 2779 0.605319 TTTTCCTTGCAGCCGTCGAT 60.605 50.000 0.00 0.00 0.00 3.59
2685 2780 1.227704 TTTTCCTTGCAGCCGTCGA 60.228 52.632 0.00 0.00 0.00 4.20
2707 2816 4.159557 TCCAGGCATATATGTGAGCTACA 58.840 43.478 14.14 0.00 44.87 2.74
2831 2941 4.518970 GGTGTTGCTCAAGAGTGGAAAATA 59.481 41.667 0.00 0.00 0.00 1.40
2845 2955 4.764172 AGAGAGTGATTATGGTGTTGCTC 58.236 43.478 0.00 0.00 0.00 4.26
2856 2967 7.735917 TGAGAAGAAAACCAAGAGAGTGATTA 58.264 34.615 0.00 0.00 0.00 1.75
2874 2985 5.003804 GCTTACCAAAATCCACTGAGAAGA 58.996 41.667 0.00 0.00 0.00 2.87
2880 2991 5.248870 GGTATGCTTACCAAAATCCACTG 57.751 43.478 20.91 0.00 46.24 3.66
2896 3007 6.806739 GTCAAGTGAAGGTTATTTTGGTATGC 59.193 38.462 0.00 0.00 0.00 3.14
2922 3033 2.132762 GGAAGCAAACGAGAAGACGAA 58.867 47.619 0.00 0.00 37.03 3.85
2924 3035 1.497991 TGGAAGCAAACGAGAAGACG 58.502 50.000 0.00 0.00 39.31 4.18
2939 3050 7.942341 ACAAGTTTGGACAAAGACTATATGGAA 59.058 33.333 0.00 0.00 0.00 3.53
2951 3062 3.006323 AGCAACACACAAGTTTGGACAAA 59.994 39.130 0.00 0.00 0.00 2.83
3002 3114 0.394488 TTCTGCAACGTTCCCCAACA 60.394 50.000 0.00 0.00 32.14 3.33
3003 3115 0.741915 TTTCTGCAACGTTCCCCAAC 59.258 50.000 0.00 0.00 0.00 3.77
3004 3116 1.135333 GTTTTCTGCAACGTTCCCCAA 59.865 47.619 0.00 0.00 0.00 4.12
3005 3117 0.741915 GTTTTCTGCAACGTTCCCCA 59.258 50.000 0.00 0.00 0.00 4.96
3006 3118 0.741915 TGTTTTCTGCAACGTTCCCC 59.258 50.000 0.00 0.00 0.00 4.81
3007 3119 2.570442 TTGTTTTCTGCAACGTTCCC 57.430 45.000 0.00 0.00 0.00 3.97
3008 3120 4.912528 TTTTTGTTTTCTGCAACGTTCC 57.087 36.364 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.