Multiple sequence alignment - TraesCS6A01G142400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G142400 chr6A 100.000 3859 0 0 1 3859 117346604 117350462 0.000000e+00 7127.0
1 TraesCS6A01G142400 chr6A 83.796 648 86 11 2511 3151 11410612 11409977 7.140000e-167 597.0
2 TraesCS6A01G142400 chr6A 87.218 133 17 0 1894 2026 346346038 346345906 6.680000e-33 152.0
3 TraesCS6A01G142400 chr6B 90.398 2312 138 41 874 3151 183305101 183307362 0.000000e+00 2963.0
4 TraesCS6A01G142400 chr6B 95.827 671 27 1 3190 3859 183307359 183308029 0.000000e+00 1083.0
5 TraesCS6A01G142400 chr6B 83.964 449 51 15 1 443 183304676 183305109 9.980000e-111 411.0
6 TraesCS6A01G142400 chr6B 83.182 440 70 4 439 876 644447257 644446820 2.160000e-107 399.0
7 TraesCS6A01G142400 chr6D 95.987 1271 39 4 1881 3151 98100113 98101371 0.000000e+00 2054.0
8 TraesCS6A01G142400 chr6D 89.268 1025 59 15 874 1885 98098964 98099950 0.000000e+00 1236.0
9 TraesCS6A01G142400 chr6D 84.328 134 13 2 3578 3711 98102170 98102045 1.460000e-24 124.0
10 TraesCS6A01G142400 chr2B 84.911 676 80 11 2480 3151 777555876 777555219 0.000000e+00 664.0
11 TraesCS6A01G142400 chr2B 86.455 598 75 6 1884 2478 777556736 777556142 0.000000e+00 651.0
12 TraesCS6A01G142400 chr5A 86.789 598 73 6 1884 2478 694511914 694511320 0.000000e+00 662.0
13 TraesCS6A01G142400 chr5A 84.467 676 83 11 2480 3151 694511054 694510397 0.000000e+00 647.0
14 TraesCS6A01G142400 chr5A 83.070 443 71 4 439 879 471709981 471709541 2.160000e-107 399.0
15 TraesCS6A01G142400 chr1B 84.448 688 89 9 2470 3151 183885237 183884562 0.000000e+00 662.0
16 TraesCS6A01G142400 chr1B 85.063 636 71 13 1863 2483 183886124 183885498 9.100000e-176 627.0
17 TraesCS6A01G142400 chr1B 83.747 443 68 4 436 876 157411734 157412174 2.140000e-112 416.0
18 TraesCS6A01G142400 chr1B 87.500 152 16 2 67 216 299652616 299652766 5.130000e-39 172.0
19 TraesCS6A01G142400 chr3B 84.389 679 83 12 2477 3151 125867024 125867683 0.000000e+00 645.0
20 TraesCS6A01G142400 chr3B 86.120 598 77 6 1884 2478 125866167 125866761 1.170000e-179 640.0
21 TraesCS6A01G142400 chr3B 83.371 439 69 4 439 875 660699697 660699261 1.670000e-108 403.0
22 TraesCS6A01G142400 chr1D 86.519 586 71 6 1900 2481 172863919 172863338 4.200000e-179 638.0
23 TraesCS6A01G142400 chr1D 80.966 683 77 21 2470 3151 172863084 172862454 3.460000e-135 492.0
24 TraesCS6A01G142400 chr1D 86.432 199 23 4 1 198 204050339 204050534 8.400000e-52 215.0
25 TraesCS6A01G142400 chr7B 83.409 440 69 4 439 876 38612308 38612745 4.640000e-109 405.0
26 TraesCS6A01G142400 chr7B 82.571 459 74 5 439 893 657339840 657339384 2.160000e-107 399.0
27 TraesCS6A01G142400 chr2A 83.036 448 72 4 436 881 652870385 652869940 1.670000e-108 403.0
28 TraesCS6A01G142400 chr2A 78.344 157 21 8 1 154 595003674 595003528 5.310000e-14 89.8
29 TraesCS6A01G142400 chr7A 78.736 522 70 22 2595 3114 493115060 493115542 1.040000e-80 311.0
30 TraesCS6A01G142400 chr7A 85.859 198 25 2 3 198 228483545 228483741 1.410000e-49 207.0
31 TraesCS6A01G142400 chr7A 87.805 164 15 5 18 181 183666232 183666074 1.830000e-43 187.0
32 TraesCS6A01G142400 chr7D 84.155 284 45 0 2595 2878 442283720 442284003 3.800000e-70 276.0
33 TraesCS6A01G142400 chr7D 85.455 220 28 3 1 217 58926429 58926647 3.880000e-55 226.0
34 TraesCS6A01G142400 chr4A 87.264 212 23 3 1 212 154836496 154836703 4.980000e-59 239.0
35 TraesCS6A01G142400 chr1A 83.920 199 27 5 1 198 259068222 259068416 6.580000e-43 185.0
36 TraesCS6A01G142400 chr5B 88.387 155 13 4 56 206 660844608 660844761 8.520000e-42 182.0
37 TraesCS6A01G142400 chr3D 85.882 170 24 0 1900 2069 489734722 489734891 8.520000e-42 182.0
38 TraesCS6A01G142400 chr4D 97.297 37 1 0 1277 1313 479005735 479005699 3.220000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G142400 chr6A 117346604 117350462 3858 False 7127.000000 7127 100.0000 1 3859 1 chr6A.!!$F1 3858
1 TraesCS6A01G142400 chr6A 11409977 11410612 635 True 597.000000 597 83.7960 2511 3151 1 chr6A.!!$R1 640
2 TraesCS6A01G142400 chr6B 183304676 183308029 3353 False 1485.666667 2963 90.0630 1 3859 3 chr6B.!!$F1 3858
3 TraesCS6A01G142400 chr6D 98098964 98101371 2407 False 1645.000000 2054 92.6275 874 3151 2 chr6D.!!$F1 2277
4 TraesCS6A01G142400 chr2B 777555219 777556736 1517 True 657.500000 664 85.6830 1884 3151 2 chr2B.!!$R1 1267
5 TraesCS6A01G142400 chr5A 694510397 694511914 1517 True 654.500000 662 85.6280 1884 3151 2 chr5A.!!$R2 1267
6 TraesCS6A01G142400 chr1B 183884562 183886124 1562 True 644.500000 662 84.7555 1863 3151 2 chr1B.!!$R1 1288
7 TraesCS6A01G142400 chr3B 125866167 125867683 1516 False 642.500000 645 85.2545 1884 3151 2 chr3B.!!$F1 1267
8 TraesCS6A01G142400 chr1D 172862454 172863919 1465 True 565.000000 638 83.7425 1900 3151 2 chr1D.!!$R1 1251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
808 813 0.033504 TCCACAGGTTCGCTCTTGAC 59.966 55.0 0.0 0.0 0.0 3.18 F
1103 1112 0.036010 CTTCCATCGACACAAGGGCT 60.036 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2707 3205 0.988832 ATCCGGCAACCCTTCAAGTA 59.011 50.0 0.0 0.0 0.0 2.24 R
3032 3533 1.656587 TCTGCCCAGGAACACATACT 58.343 50.0 0.0 0.0 0.0 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 32 1.406539 GCATATGTGGGCTCACTTTGG 59.593 52.381 19.48 8.39 43.94 3.28
34 36 0.685785 TGTGGGCTCACTTTGGCAAA 60.686 50.000 19.48 12.79 43.94 3.68
47 49 7.537715 TCACTTTGGCAAACAATAGATGTATG 58.462 34.615 8.93 0.00 42.99 2.39
49 51 8.028354 CACTTTGGCAAACAATAGATGTATGAA 58.972 33.333 8.93 0.00 42.99 2.57
176 178 6.164876 TGAATTATGTGAACTTTGGGCAATG 58.835 36.000 0.00 0.00 0.00 2.82
217 221 2.389962 AAGTAAAAGTATGGCCGCGA 57.610 45.000 8.23 0.00 0.00 5.87
222 226 3.659089 AAGTATGGCCGCGAACGCT 62.659 57.895 8.23 0.71 39.32 5.07
223 227 3.192922 GTATGGCCGCGAACGCTT 61.193 61.111 8.23 0.00 39.32 4.68
227 231 1.373590 ATGGCCGCGAACGCTTTATT 61.374 50.000 8.23 0.00 39.32 1.40
237 241 6.299966 CCGCGAACGCTTTATTATTCAAATAG 59.700 38.462 8.23 0.00 39.32 1.73
238 242 7.061027 CGCGAACGCTTTATTATTCAAATAGA 58.939 34.615 16.66 0.00 39.32 1.98
270 275 5.506708 AGATAAAGGTTAAAATGCCGACCT 58.493 37.500 0.00 0.00 44.11 3.85
271 276 3.934457 AAAGGTTAAAATGCCGACCTG 57.066 42.857 0.00 0.00 41.49 4.00
273 278 3.366052 AGGTTAAAATGCCGACCTGAT 57.634 42.857 0.00 0.00 40.84 2.90
284 289 5.224562 TGCCGACCTGATAAATAAAAACG 57.775 39.130 0.00 0.00 0.00 3.60
309 314 8.757164 GGACAAAATTTTCGTCCATTTAGATT 57.243 30.769 28.70 0.00 46.98 2.40
311 316 9.405587 GACAAAATTTTCGTCCATTTAGATTGA 57.594 29.630 16.33 0.00 0.00 2.57
314 319 6.737254 ATTTTCGTCCATTTAGATTGACGT 57.263 33.333 16.29 0.00 46.04 4.34
319 324 5.751509 TCGTCCATTTAGATTGACGTATTGG 59.248 40.000 16.29 0.00 46.04 3.16
326 331 6.525578 TTAGATTGACGTATTGGAGACACT 57.474 37.500 0.00 0.00 42.67 3.55
327 332 5.407407 AGATTGACGTATTGGAGACACTT 57.593 39.130 0.00 0.00 42.67 3.16
334 339 3.927142 CGTATTGGAGACACTTGAGGTTC 59.073 47.826 0.00 0.00 42.67 3.62
339 344 0.393077 AGACACTTGAGGTTCGGTGG 59.607 55.000 0.00 0.00 34.42 4.61
342 347 0.602905 CACTTGAGGTTCGGTGGACC 60.603 60.000 0.00 0.00 37.44 4.46
343 348 1.003718 CTTGAGGTTCGGTGGACCC 60.004 63.158 0.00 0.00 37.93 4.46
372 377 1.560923 CGTAGGAATTCTGCAGACCG 58.439 55.000 18.03 6.42 0.00 4.79
373 378 1.291132 GTAGGAATTCTGCAGACCGC 58.709 55.000 18.03 8.13 42.89 5.68
413 418 1.396301 CAGCAGGAAATCAGCTTCGTC 59.604 52.381 0.00 0.00 36.26 4.20
424 429 2.027625 GCTTCGTCCGTTCCACAGG 61.028 63.158 0.00 0.00 0.00 4.00
440 445 2.269241 GGAAAGCGTCCCCTCAGG 59.731 66.667 0.00 0.00 41.10 3.86
441 446 2.436824 GAAAGCGTCCCCTCAGGC 60.437 66.667 0.00 0.00 34.51 4.85
442 447 2.930562 AAAGCGTCCCCTCAGGCT 60.931 61.111 0.00 0.00 39.18 4.58
443 448 2.860972 GAAAGCGTCCCCTCAGGCTC 62.861 65.000 0.00 0.00 36.49 4.70
444 449 3.914551 AAGCGTCCCCTCAGGCTCT 62.915 63.158 0.00 0.00 36.49 4.09
445 450 4.154347 GCGTCCCCTCAGGCTCTG 62.154 72.222 0.00 0.00 34.51 3.35
446 451 2.681778 CGTCCCCTCAGGCTCTGT 60.682 66.667 0.00 0.00 34.51 3.41
447 452 2.286523 CGTCCCCTCAGGCTCTGTT 61.287 63.158 0.00 0.00 34.51 3.16
448 453 1.599576 GTCCCCTCAGGCTCTGTTC 59.400 63.158 0.00 0.00 34.51 3.18
449 454 1.984570 TCCCCTCAGGCTCTGTTCG 60.985 63.158 0.00 0.00 34.51 3.95
450 455 2.581354 CCCTCAGGCTCTGTTCGG 59.419 66.667 0.00 2.94 32.61 4.30
451 456 2.286523 CCCTCAGGCTCTGTTCGGT 61.287 63.158 0.00 0.00 32.61 4.69
452 457 0.970937 CCCTCAGGCTCTGTTCGGTA 60.971 60.000 0.00 0.00 32.61 4.02
453 458 1.115467 CCTCAGGCTCTGTTCGGTAT 58.885 55.000 2.68 0.00 32.61 2.73
454 459 2.307768 CCTCAGGCTCTGTTCGGTATA 58.692 52.381 2.68 0.00 32.61 1.47
455 460 2.034812 CCTCAGGCTCTGTTCGGTATAC 59.965 54.545 0.00 0.00 32.61 1.47
456 461 2.688446 CTCAGGCTCTGTTCGGTATACA 59.312 50.000 5.01 0.00 32.61 2.29
457 462 2.688446 TCAGGCTCTGTTCGGTATACAG 59.312 50.000 5.01 0.16 43.41 2.74
458 463 2.032620 AGGCTCTGTTCGGTATACAGG 58.967 52.381 5.01 0.00 42.53 4.00
459 464 1.068741 GGCTCTGTTCGGTATACAGGG 59.931 57.143 5.01 0.00 45.05 4.45
460 465 2.029623 GCTCTGTTCGGTATACAGGGA 58.970 52.381 7.04 0.00 45.07 4.20
461 466 2.628657 GCTCTGTTCGGTATACAGGGAT 59.371 50.000 7.04 0.00 45.07 3.85
462 467 3.069729 GCTCTGTTCGGTATACAGGGATT 59.930 47.826 7.04 0.00 45.07 3.01
463 468 4.443034 GCTCTGTTCGGTATACAGGGATTT 60.443 45.833 7.04 0.00 45.07 2.17
464 469 5.272283 TCTGTTCGGTATACAGGGATTTC 57.728 43.478 5.01 0.00 42.53 2.17
465 470 4.049186 CTGTTCGGTATACAGGGATTTCG 58.951 47.826 5.01 0.00 39.42 3.46
466 471 2.798847 GTTCGGTATACAGGGATTTCGC 59.201 50.000 5.01 0.00 0.00 4.70
467 472 2.033372 TCGGTATACAGGGATTTCGCA 58.967 47.619 5.01 0.00 0.00 5.10
468 473 2.035449 TCGGTATACAGGGATTTCGCAG 59.965 50.000 5.01 0.00 0.00 5.18
469 474 2.767505 GGTATACAGGGATTTCGCAGG 58.232 52.381 5.01 0.00 0.00 4.85
470 475 2.367567 GGTATACAGGGATTTCGCAGGA 59.632 50.000 5.01 0.00 0.00 3.86
471 476 3.008049 GGTATACAGGGATTTCGCAGGAT 59.992 47.826 5.01 0.00 0.00 3.24
472 477 3.864789 ATACAGGGATTTCGCAGGATT 57.135 42.857 0.00 0.00 0.00 3.01
473 478 2.514458 ACAGGGATTTCGCAGGATTT 57.486 45.000 0.00 0.00 0.00 2.17
474 479 2.807676 ACAGGGATTTCGCAGGATTTT 58.192 42.857 0.00 0.00 0.00 1.82
475 480 3.165071 ACAGGGATTTCGCAGGATTTTT 58.835 40.909 0.00 0.00 0.00 1.94
492 497 3.628832 TTTTTGGGGGATGAGTTTCCT 57.371 42.857 0.00 0.00 35.97 3.36
493 498 3.628832 TTTTGGGGGATGAGTTTCCTT 57.371 42.857 0.00 0.00 35.97 3.36
494 499 4.750833 TTTTGGGGGATGAGTTTCCTTA 57.249 40.909 0.00 0.00 35.97 2.69
495 500 4.316025 TTTGGGGGATGAGTTTCCTTAG 57.684 45.455 0.00 0.00 35.97 2.18
496 501 2.205342 TGGGGGATGAGTTTCCTTAGG 58.795 52.381 0.00 0.00 35.97 2.69
497 502 2.226039 TGGGGGATGAGTTTCCTTAGGA 60.226 50.000 0.00 0.00 35.97 2.94
498 503 2.850568 GGGGGATGAGTTTCCTTAGGAA 59.149 50.000 10.01 10.01 40.27 3.36
499 504 3.463704 GGGGGATGAGTTTCCTTAGGAAT 59.536 47.826 15.09 0.00 41.71 3.01
500 505 4.079154 GGGGGATGAGTTTCCTTAGGAATT 60.079 45.833 15.09 6.39 41.71 2.17
501 506 5.519808 GGGGATGAGTTTCCTTAGGAATTT 58.480 41.667 15.09 6.02 41.71 1.82
502 507 5.594725 GGGGATGAGTTTCCTTAGGAATTTC 59.405 44.000 15.09 14.73 41.71 2.17
503 508 6.427441 GGGATGAGTTTCCTTAGGAATTTCT 58.573 40.000 15.09 12.90 41.71 2.52
504 509 7.366551 GGGGATGAGTTTCCTTAGGAATTTCTA 60.367 40.741 15.09 7.06 41.71 2.10
505 510 7.499563 GGGATGAGTTTCCTTAGGAATTTCTAC 59.500 40.741 15.09 9.41 41.71 2.59
506 511 7.499563 GGATGAGTTTCCTTAGGAATTTCTACC 59.500 40.741 15.09 15.84 41.71 3.18
507 512 6.718294 TGAGTTTCCTTAGGAATTTCTACCC 58.282 40.000 15.09 1.09 41.71 3.69
508 513 6.273730 TGAGTTTCCTTAGGAATTTCTACCCA 59.726 38.462 15.09 3.82 41.71 4.51
509 514 6.482524 AGTTTCCTTAGGAATTTCTACCCAC 58.517 40.000 15.09 6.56 41.71 4.61
510 515 6.045106 AGTTTCCTTAGGAATTTCTACCCACA 59.955 38.462 15.09 0.00 41.71 4.17
511 516 5.693769 TCCTTAGGAATTTCTACCCACAG 57.306 43.478 0.00 0.00 0.00 3.66
512 517 5.098663 TCCTTAGGAATTTCTACCCACAGT 58.901 41.667 0.00 0.00 0.00 3.55
513 518 5.045869 TCCTTAGGAATTTCTACCCACAGTG 60.046 44.000 0.00 0.00 0.00 3.66
514 519 3.073274 AGGAATTTCTACCCACAGTGC 57.927 47.619 0.00 0.00 0.00 4.40
515 520 1.737793 GGAATTTCTACCCACAGTGCG 59.262 52.381 0.00 0.00 0.00 5.34
516 521 2.423577 GAATTTCTACCCACAGTGCGT 58.576 47.619 0.00 0.00 0.00 5.24
517 522 2.561478 ATTTCTACCCACAGTGCGTT 57.439 45.000 0.00 0.00 0.00 4.84
518 523 1.873698 TTTCTACCCACAGTGCGTTC 58.126 50.000 0.00 0.00 0.00 3.95
519 524 0.319211 TTCTACCCACAGTGCGTTCG 60.319 55.000 0.00 0.00 0.00 3.95
520 525 1.006571 CTACCCACAGTGCGTTCGT 60.007 57.895 0.00 0.00 0.00 3.85
521 526 0.599204 CTACCCACAGTGCGTTCGTT 60.599 55.000 0.00 0.00 0.00 3.85
522 527 0.179078 TACCCACAGTGCGTTCGTTT 60.179 50.000 0.00 0.00 0.00 3.60
523 528 1.027792 ACCCACAGTGCGTTCGTTTT 61.028 50.000 0.00 0.00 0.00 2.43
524 529 0.591236 CCCACAGTGCGTTCGTTTTG 60.591 55.000 0.00 0.00 0.00 2.44
525 530 0.591236 CCACAGTGCGTTCGTTTTGG 60.591 55.000 0.00 0.00 0.00 3.28
526 531 0.375454 CACAGTGCGTTCGTTTTGGA 59.625 50.000 0.00 0.00 0.00 3.53
527 532 0.655733 ACAGTGCGTTCGTTTTGGAG 59.344 50.000 0.00 0.00 0.00 3.86
528 533 0.041312 CAGTGCGTTCGTTTTGGAGG 60.041 55.000 0.00 0.00 0.00 4.30
529 534 0.179067 AGTGCGTTCGTTTTGGAGGA 60.179 50.000 0.00 0.00 0.00 3.71
530 535 0.658897 GTGCGTTCGTTTTGGAGGAA 59.341 50.000 0.00 0.00 0.00 3.36
531 536 1.265905 GTGCGTTCGTTTTGGAGGAAT 59.734 47.619 0.00 0.00 34.91 3.01
532 537 2.481185 GTGCGTTCGTTTTGGAGGAATA 59.519 45.455 0.00 0.00 34.91 1.75
533 538 2.481185 TGCGTTCGTTTTGGAGGAATAC 59.519 45.455 0.00 0.00 34.91 1.89
534 539 2.159612 GCGTTCGTTTTGGAGGAATACC 60.160 50.000 0.00 0.00 34.91 2.73
535 540 2.093152 CGTTCGTTTTGGAGGAATACCG 59.907 50.000 0.00 0.00 41.83 4.02
536 541 2.389962 TCGTTTTGGAGGAATACCGG 57.610 50.000 0.00 0.00 41.83 5.28
537 542 1.624813 TCGTTTTGGAGGAATACCGGT 59.375 47.619 13.98 13.98 41.83 5.28
538 543 1.735571 CGTTTTGGAGGAATACCGGTG 59.264 52.381 19.93 0.00 41.83 4.94
539 544 2.089201 GTTTTGGAGGAATACCGGTGG 58.911 52.381 19.93 0.00 41.83 4.61
540 545 0.034863 TTTGGAGGAATACCGGTGGC 60.035 55.000 19.93 5.95 41.83 5.01
541 546 1.917336 TTGGAGGAATACCGGTGGCC 61.917 60.000 19.93 15.56 41.83 5.36
542 547 2.070650 GGAGGAATACCGGTGGCCT 61.071 63.158 19.93 20.27 41.83 5.19
543 548 1.146263 GAGGAATACCGGTGGCCTG 59.854 63.158 23.98 0.00 41.83 4.85
544 549 1.615424 AGGAATACCGGTGGCCTGT 60.615 57.895 19.93 0.00 41.83 4.00
545 550 1.205460 AGGAATACCGGTGGCCTGTT 61.205 55.000 19.93 2.03 41.83 3.16
546 551 0.746923 GGAATACCGGTGGCCTGTTC 60.747 60.000 19.93 11.08 0.00 3.18
547 552 0.746923 GAATACCGGTGGCCTGTTCC 60.747 60.000 19.93 0.21 0.00 3.62
548 553 2.530958 AATACCGGTGGCCTGTTCCG 62.531 60.000 19.93 17.50 43.30 4.30
553 558 3.998672 GTGGCCTGTTCCGTCGGA 61.999 66.667 10.71 10.71 0.00 4.55
554 559 3.235481 TGGCCTGTTCCGTCGGAA 61.235 61.111 22.76 22.76 39.66 4.30
555 560 2.267961 GGCCTGTTCCGTCGGAAT 59.732 61.111 28.45 0.00 44.04 3.01
556 561 1.259142 TGGCCTGTTCCGTCGGAATA 61.259 55.000 28.45 24.32 44.04 1.75
557 562 0.808847 GGCCTGTTCCGTCGGAATAC 60.809 60.000 28.45 18.36 44.04 1.89
558 563 0.808847 GCCTGTTCCGTCGGAATACC 60.809 60.000 28.45 16.72 44.04 2.73
559 564 0.533491 CCTGTTCCGTCGGAATACCA 59.467 55.000 28.45 20.10 44.04 3.25
560 565 1.470979 CCTGTTCCGTCGGAATACCAG 60.471 57.143 28.45 26.65 44.04 4.00
561 566 0.533491 TGTTCCGTCGGAATACCAGG 59.467 55.000 28.45 0.00 44.04 4.45
562 567 0.808847 GTTCCGTCGGAATACCAGGC 60.809 60.000 28.45 11.01 44.04 4.85
563 568 2.279252 CCGTCGGAATACCAGGCG 60.279 66.667 4.91 0.00 37.47 5.52
564 569 2.279252 CGTCGGAATACCAGGCGG 60.279 66.667 0.00 0.00 35.48 6.13
565 570 2.777972 CGTCGGAATACCAGGCGGA 61.778 63.158 2.43 0.00 35.48 5.54
566 571 1.227176 GTCGGAATACCAGGCGGAC 60.227 63.158 2.43 0.00 35.59 4.79
567 572 2.108362 CGGAATACCAGGCGGACC 59.892 66.667 2.43 0.00 35.59 4.46
578 583 3.618171 GGCGGACCTGTACTTTTCA 57.382 52.632 0.00 0.00 0.00 2.69
579 584 1.154197 GGCGGACCTGTACTTTTCAC 58.846 55.000 0.00 0.00 0.00 3.18
580 585 1.541670 GGCGGACCTGTACTTTTCACA 60.542 52.381 0.00 0.00 0.00 3.58
581 586 1.798813 GCGGACCTGTACTTTTCACAG 59.201 52.381 0.00 0.00 42.52 3.66
595 600 9.788960 GTACTTTTCACAGGAAATGATAAATCC 57.211 33.333 9.23 0.00 42.31 3.01
596 601 8.421249 ACTTTTCACAGGAAATGATAAATCCA 57.579 30.769 9.23 0.00 42.31 3.41
597 602 8.306761 ACTTTTCACAGGAAATGATAAATCCAC 58.693 33.333 9.23 0.00 42.31 4.02
598 603 8.421249 TTTTCACAGGAAATGATAAATCCACT 57.579 30.769 0.00 0.00 42.31 4.00
599 604 7.395190 TTCACAGGAAATGATAAATCCACTG 57.605 36.000 0.00 0.00 35.62 3.66
600 605 5.887598 TCACAGGAAATGATAAATCCACTGG 59.112 40.000 0.00 0.00 35.62 4.00
601 606 5.887598 CACAGGAAATGATAAATCCACTGGA 59.112 40.000 0.00 0.00 35.62 3.86
602 607 6.377996 CACAGGAAATGATAAATCCACTGGAA 59.622 38.462 0.66 0.00 34.34 3.53
603 608 6.378280 ACAGGAAATGATAAATCCACTGGAAC 59.622 38.462 0.66 0.00 34.34 3.62
604 609 6.604795 CAGGAAATGATAAATCCACTGGAACT 59.395 38.462 0.66 0.00 34.34 3.01
605 610 7.123247 CAGGAAATGATAAATCCACTGGAACTT 59.877 37.037 0.66 1.65 34.34 2.66
606 611 7.340487 AGGAAATGATAAATCCACTGGAACTTC 59.660 37.037 0.66 0.00 34.34 3.01
607 612 7.122650 GGAAATGATAAATCCACTGGAACTTCA 59.877 37.037 0.66 4.14 34.34 3.02
608 613 8.599624 AAATGATAAATCCACTGGAACTTCAT 57.400 30.769 0.66 6.18 34.34 2.57
609 614 7.578310 ATGATAAATCCACTGGAACTTCATG 57.422 36.000 0.66 0.00 34.34 3.07
610 615 6.484288 TGATAAATCCACTGGAACTTCATGT 58.516 36.000 0.66 0.00 34.34 3.21
611 616 6.947733 TGATAAATCCACTGGAACTTCATGTT 59.052 34.615 0.66 0.00 42.38 2.71
612 617 5.458041 AAATCCACTGGAACTTCATGTTG 57.542 39.130 0.66 0.00 39.30 3.33
613 618 3.576078 TCCACTGGAACTTCATGTTGT 57.424 42.857 0.00 0.00 39.30 3.32
614 619 3.476552 TCCACTGGAACTTCATGTTGTC 58.523 45.455 0.00 0.00 39.30 3.18
615 620 2.224079 CCACTGGAACTTCATGTTGTCG 59.776 50.000 0.00 0.00 39.30 4.35
616 621 1.873591 ACTGGAACTTCATGTTGTCGC 59.126 47.619 0.00 0.00 39.30 5.19
617 622 0.865111 TGGAACTTCATGTTGTCGCG 59.135 50.000 0.00 0.00 39.30 5.87
618 623 0.165944 GGAACTTCATGTTGTCGCGG 59.834 55.000 6.13 0.00 39.30 6.46
619 624 1.144969 GAACTTCATGTTGTCGCGGA 58.855 50.000 6.13 0.00 39.30 5.54
620 625 1.126846 GAACTTCATGTTGTCGCGGAG 59.873 52.381 6.13 0.00 39.30 4.63
621 626 0.670546 ACTTCATGTTGTCGCGGAGG 60.671 55.000 6.13 0.00 0.00 4.30
622 627 1.970917 CTTCATGTTGTCGCGGAGGC 61.971 60.000 6.13 0.00 0.00 4.70
623 628 3.499737 CATGTTGTCGCGGAGGCC 61.500 66.667 6.13 0.00 35.02 5.19
624 629 4.778143 ATGTTGTCGCGGAGGCCC 62.778 66.667 6.13 0.00 35.02 5.80
638 643 2.107953 GCCCGAGGCTAGCTCTTG 59.892 66.667 15.72 13.17 46.69 3.02
639 644 2.107953 CCCGAGGCTAGCTCTTGC 59.892 66.667 15.72 0.00 40.05 4.01
649 654 4.100981 GCTCTTGCTCTAGTGCGG 57.899 61.111 11.87 7.58 36.03 5.69
650 655 1.216710 GCTCTTGCTCTAGTGCGGT 59.783 57.895 11.87 0.00 36.03 5.68
651 656 0.390472 GCTCTTGCTCTAGTGCGGTT 60.390 55.000 11.87 0.00 36.03 4.44
652 657 1.634702 CTCTTGCTCTAGTGCGGTTC 58.365 55.000 11.87 0.00 35.36 3.62
653 658 0.966179 TCTTGCTCTAGTGCGGTTCA 59.034 50.000 11.87 0.00 35.36 3.18
654 659 1.067565 TCTTGCTCTAGTGCGGTTCAG 60.068 52.381 11.87 3.58 35.36 3.02
655 660 0.670546 TTGCTCTAGTGCGGTTCAGC 60.671 55.000 11.87 0.87 35.36 4.26
656 661 1.811679 GCTCTAGTGCGGTTCAGCC 60.812 63.158 0.25 0.00 36.02 4.85
669 674 3.769536 GGTTCAGCCGAATAAACAATGG 58.230 45.455 0.00 0.00 32.61 3.16
670 675 3.179048 GTTCAGCCGAATAAACAATGGC 58.821 45.455 0.00 0.00 46.07 4.40
673 678 1.559831 GCCGAATAAACAATGGCTGC 58.440 50.000 0.00 0.00 42.44 5.25
674 679 1.135141 GCCGAATAAACAATGGCTGCA 60.135 47.619 0.50 0.00 42.44 4.41
675 680 2.481795 GCCGAATAAACAATGGCTGCAT 60.482 45.455 0.50 0.00 42.44 3.96
676 681 3.117794 CCGAATAAACAATGGCTGCATG 58.882 45.455 0.50 0.00 0.00 4.06
677 682 3.117794 CGAATAAACAATGGCTGCATGG 58.882 45.455 0.50 0.00 0.00 3.66
678 683 3.460103 GAATAAACAATGGCTGCATGGG 58.540 45.455 0.50 0.00 0.00 4.00
679 684 2.228545 TAAACAATGGCTGCATGGGA 57.771 45.000 0.50 0.00 0.00 4.37
680 685 0.899720 AAACAATGGCTGCATGGGAG 59.100 50.000 0.50 0.00 0.00 4.30
681 686 0.974010 AACAATGGCTGCATGGGAGG 60.974 55.000 0.50 0.00 0.00 4.30
682 687 1.380785 CAATGGCTGCATGGGAGGT 60.381 57.895 0.50 0.00 0.00 3.85
683 688 1.076485 AATGGCTGCATGGGAGGTC 60.076 57.895 0.50 0.00 0.00 3.85
684 689 1.866483 AATGGCTGCATGGGAGGTCA 61.866 55.000 0.50 0.00 0.00 4.02
685 690 1.652187 ATGGCTGCATGGGAGGTCAT 61.652 55.000 0.50 0.00 0.00 3.06
686 691 1.527844 GGCTGCATGGGAGGTCATC 60.528 63.158 0.50 0.00 0.00 2.92
687 692 1.225426 GCTGCATGGGAGGTCATCA 59.775 57.895 0.00 0.00 0.00 3.07
688 693 1.099879 GCTGCATGGGAGGTCATCAC 61.100 60.000 0.00 0.00 0.00 3.06
689 694 0.545171 CTGCATGGGAGGTCATCACT 59.455 55.000 0.00 0.00 30.04 3.41
690 695 0.994247 TGCATGGGAGGTCATCACTT 59.006 50.000 0.00 0.00 30.04 3.16
691 696 1.065199 TGCATGGGAGGTCATCACTTC 60.065 52.381 0.00 0.00 30.04 3.01
692 697 1.211457 GCATGGGAGGTCATCACTTCT 59.789 52.381 0.00 0.00 30.04 2.85
693 698 2.435805 GCATGGGAGGTCATCACTTCTA 59.564 50.000 0.00 0.00 30.04 2.10
694 699 3.118261 GCATGGGAGGTCATCACTTCTAA 60.118 47.826 0.00 0.00 30.04 2.10
695 700 4.626287 GCATGGGAGGTCATCACTTCTAAA 60.626 45.833 0.00 0.00 30.04 1.85
696 701 4.826274 TGGGAGGTCATCACTTCTAAAG 57.174 45.455 0.00 0.00 30.04 1.85
697 702 4.425772 TGGGAGGTCATCACTTCTAAAGA 58.574 43.478 0.00 0.00 30.04 2.52
698 703 4.223032 TGGGAGGTCATCACTTCTAAAGAC 59.777 45.833 0.00 0.00 30.04 3.01
699 704 4.223032 GGGAGGTCATCACTTCTAAAGACA 59.777 45.833 0.00 0.00 0.00 3.41
700 705 5.280011 GGGAGGTCATCACTTCTAAAGACAA 60.280 44.000 0.00 0.00 0.00 3.18
701 706 6.410540 GGAGGTCATCACTTCTAAAGACAAT 58.589 40.000 0.00 0.00 0.00 2.71
702 707 7.364762 GGGAGGTCATCACTTCTAAAGACAATA 60.365 40.741 0.00 0.00 0.00 1.90
703 708 8.041323 GGAGGTCATCACTTCTAAAGACAATAA 58.959 37.037 0.00 0.00 0.00 1.40
704 709 9.436957 GAGGTCATCACTTCTAAAGACAATAAA 57.563 33.333 0.00 0.00 0.00 1.40
705 710 9.793259 AGGTCATCACTTCTAAAGACAATAAAA 57.207 29.630 0.00 0.00 0.00 1.52
727 732 7.674471 AAAAACTCTAATCAGCAGTAAGGAC 57.326 36.000 0.00 0.00 0.00 3.85
728 733 4.640789 ACTCTAATCAGCAGTAAGGACG 57.359 45.455 0.00 0.00 0.00 4.79
729 734 3.181485 ACTCTAATCAGCAGTAAGGACGC 60.181 47.826 0.00 0.00 0.00 5.19
730 735 2.100916 TCTAATCAGCAGTAAGGACGCC 59.899 50.000 0.00 0.00 0.00 5.68
731 736 0.107654 AATCAGCAGTAAGGACGCCC 60.108 55.000 0.00 0.00 0.00 6.13
732 737 1.264749 ATCAGCAGTAAGGACGCCCA 61.265 55.000 0.00 0.00 33.88 5.36
733 738 1.221840 CAGCAGTAAGGACGCCCAT 59.778 57.895 0.00 0.00 33.88 4.00
734 739 0.811616 CAGCAGTAAGGACGCCCATC 60.812 60.000 0.00 0.00 33.88 3.51
735 740 1.523938 GCAGTAAGGACGCCCATCC 60.524 63.158 0.00 0.00 39.28 3.51
736 741 1.146263 CAGTAAGGACGCCCATCCC 59.854 63.158 0.00 0.00 39.91 3.85
737 742 1.003051 AGTAAGGACGCCCATCCCT 59.997 57.895 0.00 0.00 39.91 4.20
738 743 1.049289 AGTAAGGACGCCCATCCCTC 61.049 60.000 0.00 0.00 39.91 4.30
739 744 1.764854 TAAGGACGCCCATCCCTCC 60.765 63.158 0.00 0.00 39.91 4.30
740 745 2.539277 TAAGGACGCCCATCCCTCCA 62.539 60.000 0.00 0.00 39.91 3.86
741 746 3.171388 GGACGCCCATCCCTCCAT 61.171 66.667 0.00 0.00 31.94 3.41
742 747 2.427753 GACGCCCATCCCTCCATC 59.572 66.667 0.00 0.00 0.00 3.51
743 748 3.521529 GACGCCCATCCCTCCATCG 62.522 68.421 0.00 0.00 0.00 3.84
744 749 4.996434 CGCCCATCCCTCCATCGC 62.996 72.222 0.00 0.00 0.00 4.58
745 750 3.877450 GCCCATCCCTCCATCGCA 61.877 66.667 0.00 0.00 0.00 5.10
746 751 2.111878 CCCATCCCTCCATCGCAC 59.888 66.667 0.00 0.00 0.00 5.34
747 752 2.446848 CCCATCCCTCCATCGCACT 61.447 63.158 0.00 0.00 0.00 4.40
748 753 1.070445 CCATCCCTCCATCGCACTC 59.930 63.158 0.00 0.00 0.00 3.51
749 754 1.070445 CATCCCTCCATCGCACTCC 59.930 63.158 0.00 0.00 0.00 3.85
750 755 1.383109 ATCCCTCCATCGCACTCCA 60.383 57.895 0.00 0.00 0.00 3.86
751 756 0.982852 ATCCCTCCATCGCACTCCAA 60.983 55.000 0.00 0.00 0.00 3.53
752 757 1.153289 CCCTCCATCGCACTCCAAG 60.153 63.158 0.00 0.00 0.00 3.61
753 758 1.153289 CCTCCATCGCACTCCAAGG 60.153 63.158 0.00 0.00 0.00 3.61
754 759 1.617018 CCTCCATCGCACTCCAAGGA 61.617 60.000 0.00 0.00 0.00 3.36
755 760 0.467384 CTCCATCGCACTCCAAGGAT 59.533 55.000 0.00 0.00 0.00 3.24
756 761 0.911769 TCCATCGCACTCCAAGGATT 59.088 50.000 0.00 0.00 0.00 3.01
757 762 1.134401 TCCATCGCACTCCAAGGATTC 60.134 52.381 0.00 0.00 0.00 2.52
758 763 1.303309 CATCGCACTCCAAGGATTCC 58.697 55.000 0.00 0.00 0.00 3.01
759 764 1.134280 CATCGCACTCCAAGGATTCCT 60.134 52.381 0.00 0.00 33.87 3.36
760 765 1.860641 TCGCACTCCAAGGATTCCTA 58.139 50.000 5.43 0.00 31.13 2.94
761 766 2.398588 TCGCACTCCAAGGATTCCTAT 58.601 47.619 5.43 0.00 31.13 2.57
762 767 2.771943 TCGCACTCCAAGGATTCCTATT 59.228 45.455 5.43 0.00 31.13 1.73
763 768 3.134458 CGCACTCCAAGGATTCCTATTC 58.866 50.000 5.43 0.00 31.13 1.75
764 769 3.481453 GCACTCCAAGGATTCCTATTCC 58.519 50.000 5.43 0.00 31.13 3.01
765 770 3.137360 GCACTCCAAGGATTCCTATTCCT 59.863 47.826 5.43 0.00 45.70 3.36
766 771 4.712476 CACTCCAAGGATTCCTATTCCTG 58.288 47.826 5.43 0.00 42.90 3.86
767 772 3.137360 ACTCCAAGGATTCCTATTCCTGC 59.863 47.826 5.43 0.00 42.90 4.85
768 773 3.122480 TCCAAGGATTCCTATTCCTGCA 58.878 45.455 5.43 0.00 42.90 4.41
769 774 3.527253 TCCAAGGATTCCTATTCCTGCAA 59.473 43.478 5.43 0.00 42.90 4.08
770 775 4.017591 TCCAAGGATTCCTATTCCTGCAAA 60.018 41.667 5.43 0.00 42.90 3.68
771 776 4.897670 CCAAGGATTCCTATTCCTGCAAAT 59.102 41.667 5.43 0.00 42.90 2.32
772 777 5.010415 CCAAGGATTCCTATTCCTGCAAATC 59.990 44.000 5.43 0.00 42.90 2.17
773 778 4.392940 AGGATTCCTATTCCTGCAAATCG 58.607 43.478 2.49 0.00 42.11 3.34
774 779 4.103153 AGGATTCCTATTCCTGCAAATCGA 59.897 41.667 2.49 0.00 42.11 3.59
775 780 4.821805 GGATTCCTATTCCTGCAAATCGAA 59.178 41.667 0.00 0.00 0.00 3.71
776 781 5.278022 GGATTCCTATTCCTGCAAATCGAAC 60.278 44.000 0.00 0.00 0.00 3.95
777 782 4.214986 TCCTATTCCTGCAAATCGAACA 57.785 40.909 0.00 0.00 0.00 3.18
778 783 4.191544 TCCTATTCCTGCAAATCGAACAG 58.808 43.478 0.00 0.00 0.00 3.16
781 786 1.508088 CCTGCAAATCGAACAGGCC 59.492 57.895 12.41 0.00 44.16 5.19
782 787 1.243342 CCTGCAAATCGAACAGGCCA 61.243 55.000 5.01 0.00 44.16 5.36
783 788 0.597568 CTGCAAATCGAACAGGCCAA 59.402 50.000 5.01 0.00 0.00 4.52
784 789 1.000385 CTGCAAATCGAACAGGCCAAA 60.000 47.619 5.01 0.00 0.00 3.28
785 790 1.410517 TGCAAATCGAACAGGCCAAAA 59.589 42.857 5.01 0.00 0.00 2.44
786 791 2.061028 GCAAATCGAACAGGCCAAAAG 58.939 47.619 5.01 0.00 0.00 2.27
787 792 2.676076 CAAATCGAACAGGCCAAAAGG 58.324 47.619 5.01 0.00 0.00 3.11
788 793 0.603065 AATCGAACAGGCCAAAAGGC 59.397 50.000 5.01 0.00 42.78 4.35
795 800 3.369921 GGCCAAAAGGCTCCACAG 58.630 61.111 0.00 0.00 38.25 3.66
796 801 2.278330 GGCCAAAAGGCTCCACAGG 61.278 63.158 0.00 0.00 38.25 4.00
797 802 1.531602 GCCAAAAGGCTCCACAGGT 60.532 57.895 0.00 0.00 0.00 4.00
798 803 1.115326 GCCAAAAGGCTCCACAGGTT 61.115 55.000 0.00 0.00 0.00 3.50
799 804 0.961753 CCAAAAGGCTCCACAGGTTC 59.038 55.000 0.00 0.00 0.00 3.62
800 805 0.593128 CAAAAGGCTCCACAGGTTCG 59.407 55.000 0.00 0.00 0.00 3.95
801 806 1.172812 AAAAGGCTCCACAGGTTCGC 61.173 55.000 0.00 0.00 0.00 4.70
802 807 2.056906 AAAGGCTCCACAGGTTCGCT 62.057 55.000 0.00 0.00 0.00 4.93
803 808 2.435059 GGCTCCACAGGTTCGCTC 60.435 66.667 0.00 0.00 0.00 5.03
804 809 2.659610 GCTCCACAGGTTCGCTCT 59.340 61.111 0.00 0.00 0.00 4.09
805 810 1.004440 GCTCCACAGGTTCGCTCTT 60.004 57.895 0.00 0.00 0.00 2.85
806 811 1.294659 GCTCCACAGGTTCGCTCTTG 61.295 60.000 0.00 0.00 0.00 3.02
807 812 0.318441 CTCCACAGGTTCGCTCTTGA 59.682 55.000 0.00 0.00 0.00 3.02
808 813 0.033504 TCCACAGGTTCGCTCTTGAC 59.966 55.000 0.00 0.00 0.00 3.18
809 814 0.249868 CCACAGGTTCGCTCTTGACA 60.250 55.000 0.00 0.00 0.00 3.58
810 815 0.861837 CACAGGTTCGCTCTTGACAC 59.138 55.000 0.00 0.00 0.00 3.67
811 816 0.753262 ACAGGTTCGCTCTTGACACT 59.247 50.000 0.00 0.00 0.00 3.55
812 817 1.269831 ACAGGTTCGCTCTTGACACTC 60.270 52.381 0.00 0.00 0.00 3.51
813 818 1.040646 AGGTTCGCTCTTGACACTCA 58.959 50.000 0.00 0.00 0.00 3.41
814 819 1.412710 AGGTTCGCTCTTGACACTCAA 59.587 47.619 0.00 0.00 34.79 3.02
815 820 1.527311 GGTTCGCTCTTGACACTCAAC 59.473 52.381 0.00 0.00 32.21 3.18
816 821 2.474816 GTTCGCTCTTGACACTCAACT 58.525 47.619 0.00 0.00 32.21 3.16
817 822 2.423926 TCGCTCTTGACACTCAACTC 57.576 50.000 0.00 0.00 32.21 3.01
818 823 1.957177 TCGCTCTTGACACTCAACTCT 59.043 47.619 0.00 0.00 32.21 3.24
819 824 3.146847 TCGCTCTTGACACTCAACTCTA 58.853 45.455 0.00 0.00 32.21 2.43
820 825 3.759086 TCGCTCTTGACACTCAACTCTAT 59.241 43.478 0.00 0.00 32.21 1.98
821 826 4.218635 TCGCTCTTGACACTCAACTCTATT 59.781 41.667 0.00 0.00 32.21 1.73
822 827 4.560819 CGCTCTTGACACTCAACTCTATTC 59.439 45.833 0.00 0.00 32.21 1.75
823 828 4.867608 GCTCTTGACACTCAACTCTATTCC 59.132 45.833 0.00 0.00 32.21 3.01
824 829 5.337169 GCTCTTGACACTCAACTCTATTCCT 60.337 44.000 0.00 0.00 32.21 3.36
825 830 6.672266 TCTTGACACTCAACTCTATTCCTT 57.328 37.500 0.00 0.00 32.21 3.36
826 831 7.067496 TCTTGACACTCAACTCTATTCCTTT 57.933 36.000 0.00 0.00 32.21 3.11
827 832 6.931281 TCTTGACACTCAACTCTATTCCTTTG 59.069 38.462 0.00 0.00 32.21 2.77
828 833 4.997395 TGACACTCAACTCTATTCCTTTGC 59.003 41.667 0.00 0.00 0.00 3.68
829 834 4.973168 ACACTCAACTCTATTCCTTTGCA 58.027 39.130 0.00 0.00 0.00 4.08
830 835 4.999950 ACACTCAACTCTATTCCTTTGCAG 59.000 41.667 0.00 0.00 0.00 4.41
831 836 4.999950 CACTCAACTCTATTCCTTTGCAGT 59.000 41.667 0.00 0.00 0.00 4.40
832 837 5.471456 CACTCAACTCTATTCCTTTGCAGTT 59.529 40.000 0.00 0.00 0.00 3.16
833 838 6.650807 CACTCAACTCTATTCCTTTGCAGTTA 59.349 38.462 0.00 0.00 0.00 2.24
834 839 7.335422 CACTCAACTCTATTCCTTTGCAGTTAT 59.665 37.037 0.00 0.00 0.00 1.89
835 840 7.885399 ACTCAACTCTATTCCTTTGCAGTTATT 59.115 33.333 0.00 0.00 0.00 1.40
836 841 8.635765 TCAACTCTATTCCTTTGCAGTTATTT 57.364 30.769 0.00 0.00 0.00 1.40
837 842 9.733556 TCAACTCTATTCCTTTGCAGTTATTTA 57.266 29.630 0.00 0.00 0.00 1.40
842 847 9.920946 TCTATTCCTTTGCAGTTATTTATTCCT 57.079 29.630 0.00 0.00 0.00 3.36
845 850 7.083875 TCCTTTGCAGTTATTTATTCCTTCG 57.916 36.000 0.00 0.00 0.00 3.79
846 851 6.657541 TCCTTTGCAGTTATTTATTCCTTCGT 59.342 34.615 0.00 0.00 0.00 3.85
847 852 7.175990 TCCTTTGCAGTTATTTATTCCTTCGTT 59.824 33.333 0.00 0.00 0.00 3.85
848 853 7.812669 CCTTTGCAGTTATTTATTCCTTCGTTT 59.187 33.333 0.00 0.00 0.00 3.60
849 854 9.191995 CTTTGCAGTTATTTATTCCTTCGTTTT 57.808 29.630 0.00 0.00 0.00 2.43
850 855 9.535878 TTTGCAGTTATTTATTCCTTCGTTTTT 57.464 25.926 0.00 0.00 0.00 1.94
866 871 3.097461 TTTTTCGCCTCCAAACCGA 57.903 47.368 0.00 0.00 0.00 4.69
867 872 1.390565 TTTTTCGCCTCCAAACCGAA 58.609 45.000 0.00 0.00 38.97 4.30
868 873 0.664224 TTTTCGCCTCCAAACCGAAC 59.336 50.000 0.00 0.00 40.23 3.95
869 874 1.500512 TTTCGCCTCCAAACCGAACG 61.501 55.000 0.00 0.00 40.23 3.95
870 875 2.356553 CGCCTCCAAACCGAACGA 60.357 61.111 0.00 0.00 0.00 3.85
871 876 1.957186 CGCCTCCAAACCGAACGAA 60.957 57.895 0.00 0.00 0.00 3.85
872 877 1.866925 GCCTCCAAACCGAACGAAG 59.133 57.895 0.00 0.00 0.00 3.79
888 894 0.877743 GAAGCCTCAACCTGCACTTC 59.122 55.000 0.00 0.00 0.00 3.01
889 895 0.475906 AAGCCTCAACCTGCACTTCT 59.524 50.000 0.00 0.00 0.00 2.85
941 950 1.929806 GAACGCCCGGTGAAAATCCC 61.930 60.000 4.58 0.00 0.00 3.85
955 964 2.553438 AATCCCCTTCCCTCGCTCCT 62.553 60.000 0.00 0.00 0.00 3.69
956 965 2.956077 ATCCCCTTCCCTCGCTCCTC 62.956 65.000 0.00 0.00 0.00 3.71
1046 1055 2.955246 TCCCCCTCCTCTGCCTCT 60.955 66.667 0.00 0.00 0.00 3.69
1102 1111 1.026718 CCTTCCATCGACACAAGGGC 61.027 60.000 9.37 0.00 33.04 5.19
1103 1112 0.036010 CTTCCATCGACACAAGGGCT 60.036 55.000 0.00 0.00 0.00 5.19
1122 1131 2.756760 GCTGGAAGATCTGCAATTTGGA 59.243 45.455 2.29 0.00 34.07 3.53
1187 1197 6.695713 TCGATACATATTGGTTTCTCGTTCAG 59.304 38.462 0.00 0.00 0.00 3.02
1190 1200 6.727824 ACATATTGGTTTCTCGTTCAGAAG 57.272 37.500 0.00 0.00 42.37 2.85
1225 1235 4.278170 TGTTGAACATTTGTCTTGCTAGGG 59.722 41.667 0.00 0.00 0.00 3.53
1244 1254 4.459330 AGGGCAGATCTATTTCTCTTTGC 58.541 43.478 0.00 0.00 0.00 3.68
1273 1283 3.163467 GTGTGACAGACTACTACCCCTT 58.837 50.000 0.00 0.00 0.00 3.95
1281 1291 3.113043 GACTACTACCCCTTTGTCCCAT 58.887 50.000 0.00 0.00 0.00 4.00
1282 1292 4.015918 AGACTACTACCCCTTTGTCCCATA 60.016 45.833 0.00 0.00 0.00 2.74
1284 1294 4.472470 ACTACTACCCCTTTGTCCCATAAC 59.528 45.833 0.00 0.00 0.00 1.89
1287 1297 5.041015 ACTACCCCTTTGTCCCATAACATA 58.959 41.667 0.00 0.00 0.00 2.29
1289 1299 4.867086 ACCCCTTTGTCCCATAACATAAG 58.133 43.478 0.00 0.00 0.00 1.73
1290 1300 4.542525 ACCCCTTTGTCCCATAACATAAGA 59.457 41.667 0.00 0.00 0.00 2.10
1292 1302 5.770162 CCCCTTTGTCCCATAACATAAGATC 59.230 44.000 0.00 0.00 0.00 2.75
1293 1303 5.470098 CCCTTTGTCCCATAACATAAGATCG 59.530 44.000 0.00 0.00 0.00 3.69
1295 1305 6.542370 CCTTTGTCCCATAACATAAGATCGTT 59.458 38.462 0.00 0.00 0.00 3.85
1298 1308 7.931578 TGTCCCATAACATAAGATCGTTTTT 57.068 32.000 0.00 0.00 0.00 1.94
1324 1338 0.601558 ACACTAGTACGTGTGCCCAG 59.398 55.000 17.16 0.00 45.74 4.45
1403 1423 5.812642 AGAGTATTTTTCATCACTACAGGCG 59.187 40.000 0.00 0.00 0.00 5.52
1441 1465 6.808704 CAGCACTGATGTATACGCATATTAGT 59.191 38.462 0.00 0.00 0.00 2.24
1466 1492 2.810650 AACTTCGGTTCAGCTATAGCG 58.189 47.619 18.82 13.58 38.94 4.26
1496 1522 2.938756 GCCTATCCACATCCAGCTATGC 60.939 54.545 0.00 0.00 0.00 3.14
1521 1547 7.415541 GCACTGGATTCTTTGCAATTATGTAGA 60.416 37.037 0.00 0.00 34.97 2.59
1526 1552 9.638239 GGATTCTTTGCAATTATGTAGAAAACA 57.362 29.630 11.81 0.00 43.86 2.83
1562 1588 5.358922 CCAGAGAATCAGGAAGATGAAGAC 58.641 45.833 0.00 0.00 46.05 3.01
1568 1594 7.451732 AGAATCAGGAAGATGAAGACATATGG 58.548 38.462 7.80 0.00 36.96 2.74
1584 1610 6.925610 ACATATGGTGTCATTGATGTGTAC 57.074 37.500 7.80 0.00 35.77 2.90
1585 1611 6.653020 ACATATGGTGTCATTGATGTGTACT 58.347 36.000 7.80 0.00 35.77 2.73
1586 1612 6.539826 ACATATGGTGTCATTGATGTGTACTG 59.460 38.462 7.80 0.00 35.77 2.74
1587 1613 4.350368 TGGTGTCATTGATGTGTACTGT 57.650 40.909 0.00 0.00 0.00 3.55
1588 1614 5.476091 TGGTGTCATTGATGTGTACTGTA 57.524 39.130 0.00 0.00 0.00 2.74
1674 1708 1.937223 GTTGTGTGGATGTTGTGTCGA 59.063 47.619 0.00 0.00 0.00 4.20
1699 1733 2.885135 TGCTGTGATGTTTCAGGGAT 57.115 45.000 0.00 0.00 30.85 3.85
1719 1753 9.546428 CAGGGATAGTTTCTTTTGAATTTTTGT 57.454 29.630 0.00 0.00 38.37 2.83
1729 1763 9.719279 TTCTTTTGAATTTTTGTGATTTCATGC 57.281 25.926 0.00 0.00 32.77 4.06
1761 1799 1.467920 GTGGCTCCCTCAAATGAAGG 58.532 55.000 0.00 0.00 0.00 3.46
1833 1871 8.037166 TCCTATATATGATGACATTGAGTGTGC 58.963 37.037 0.00 0.00 42.36 4.57
1892 2103 6.808008 ATGCATTATTCAGTACATGGCTAC 57.192 37.500 0.00 0.00 0.00 3.58
2478 2975 3.364964 GGATAATTATGCGAACAAGGCCG 60.365 47.826 1.78 0.00 0.00 6.13
2515 3012 5.964477 TGGAACTTCCAGAAGACCTACATAT 59.036 40.000 14.19 0.00 42.67 1.78
2521 3018 9.213777 ACTTCCAGAAGACCTACATATAAATCA 57.786 33.333 14.19 0.00 40.79 2.57
2707 3205 4.571919 AGCATACAAAATTGCATTGCTGT 58.428 34.783 10.49 7.86 41.35 4.40
2786 3284 3.322541 TCACCGATAACAAGGACAACAGA 59.677 43.478 0.00 0.00 0.00 3.41
2842 3340 2.029020 GGCTGGCCTGGTTAAAAAGAAG 60.029 50.000 12.06 0.00 0.00 2.85
2878 3376 9.003658 CACCTAGTTTAATGGCTATGGAAATAG 57.996 37.037 6.32 6.32 0.00 1.73
2899 3397 0.960861 CCCCGTGGAGAAGGCTTTTC 60.961 60.000 9.18 9.18 0.00 2.29
2954 3455 6.510157 GCGACGTTGCTGTAGTACTACTAATA 60.510 42.308 28.56 11.62 37.00 0.98
3080 3581 6.634436 GCTAGTACTGATGCAATGTTAAATGC 59.366 38.462 5.39 2.98 42.86 3.56
3155 3656 8.894768 CCAAATTGTTTTACACTTATTTGGGA 57.105 30.769 18.25 0.00 44.46 4.37
3156 3657 9.331282 CCAAATTGTTTTACACTTATTTGGGAA 57.669 29.630 18.25 0.00 44.46 3.97
3159 3660 9.892130 AATTGTTTTACACTTATTTGGGAAACA 57.108 25.926 0.00 0.00 35.44 2.83
3160 3661 8.705048 TTGTTTTACACTTATTTGGGAAACAC 57.295 30.769 0.00 0.00 36.22 3.32
3161 3662 8.068892 TGTTTTACACTTATTTGGGAAACACT 57.931 30.769 0.00 0.00 33.84 3.55
3162 3663 8.532819 TGTTTTACACTTATTTGGGAAACACTT 58.467 29.630 0.00 0.00 33.84 3.16
3163 3664 9.373603 GTTTTACACTTATTTGGGAAACACTTT 57.626 29.630 0.00 0.00 31.22 2.66
3166 3667 7.648039 ACACTTATTTGGGAAACACTTTACA 57.352 32.000 0.00 0.00 0.00 2.41
3167 3668 8.245195 ACACTTATTTGGGAAACACTTTACAT 57.755 30.769 0.00 0.00 0.00 2.29
3168 3669 8.357402 ACACTTATTTGGGAAACACTTTACATC 58.643 33.333 0.00 0.00 0.00 3.06
3169 3670 8.356657 CACTTATTTGGGAAACACTTTACATCA 58.643 33.333 0.00 0.00 0.00 3.07
3170 3671 8.576442 ACTTATTTGGGAAACACTTTACATCAG 58.424 33.333 0.00 0.00 0.00 2.90
3171 3672 5.782893 TTTGGGAAACACTTTACATCAGG 57.217 39.130 0.00 0.00 0.00 3.86
3172 3673 3.153919 TGGGAAACACTTTACATCAGGC 58.846 45.455 0.00 0.00 0.00 4.85
3173 3674 2.161609 GGGAAACACTTTACATCAGGCG 59.838 50.000 0.00 0.00 0.00 5.52
3174 3675 2.812011 GGAAACACTTTACATCAGGCGT 59.188 45.455 0.00 0.00 0.00 5.68
3175 3676 3.120304 GGAAACACTTTACATCAGGCGTC 60.120 47.826 0.00 0.00 0.00 5.19
3176 3677 3.402628 AACACTTTACATCAGGCGTCT 57.597 42.857 0.00 0.00 0.00 4.18
3177 3678 2.688507 ACACTTTACATCAGGCGTCTG 58.311 47.619 11.77 11.77 42.21 3.51
3187 3688 2.699954 TCAGGCGTCTGAATTTTCTCC 58.300 47.619 19.23 0.00 46.08 3.71
3188 3689 2.038426 TCAGGCGTCTGAATTTTCTCCA 59.962 45.455 19.23 0.00 46.08 3.86
3312 3813 4.175516 CACATCAACATTGTATTGGCCAC 58.824 43.478 3.88 0.00 0.00 5.01
3339 3840 5.071115 GGTATCTCCATCTGGTAAAGCTTCT 59.929 44.000 0.00 0.00 36.34 2.85
3340 3841 4.478206 TCTCCATCTGGTAAAGCTTCTG 57.522 45.455 0.00 0.00 36.34 3.02
3350 3851 7.871853 TCTGGTAAAGCTTCTGTATTGTTTTC 58.128 34.615 0.00 0.00 0.00 2.29
3427 3928 9.508567 TTTTTGCTTTACCAAATTTATTTGTGC 57.491 25.926 12.70 9.44 44.21 4.57
3457 3958 8.579850 AGAATATCTCATTTTTGGTGTAAGCA 57.420 30.769 0.00 0.00 46.28 3.91
3464 3965 2.833227 TGGTGTAAGCAAGGGCGT 59.167 55.556 0.00 0.00 44.10 5.68
3495 3997 0.330604 AGGACCAGCAAGCATGATGT 59.669 50.000 6.43 0.00 41.38 3.06
3585 4087 3.470709 TGCCATCTCTACATAAAGCTGC 58.529 45.455 0.00 0.00 0.00 5.25
3615 4117 2.028876 GCAGGGTGGTTGTGTTTAGTT 58.971 47.619 0.00 0.00 0.00 2.24
3653 4155 5.163824 GGGAGTAACACCTGCGTATTTAAAC 60.164 44.000 0.00 0.00 0.00 2.01
3678 4180 5.011635 GGATGTGGGTTTAGGTCATTGTTTT 59.988 40.000 0.00 0.00 0.00 2.43
3748 4250 8.390354 TGCTGTGATCATTATCTAAGAAAAACG 58.610 33.333 0.00 0.00 32.93 3.60
3838 4340 3.058777 CCAAAATGTTGCTTTGCACATCC 60.059 43.478 0.00 0.00 38.71 3.51
3853 4355 4.130118 GCACATCCTAAAATCGACATCCT 58.870 43.478 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.685785 TTTGCCAAAGTGAGCCCACA 60.686 50.000 0.00 0.00 45.54 4.17
26 28 8.121305 AGTTCATACATCTATTGTTTGCCAAA 57.879 30.769 0.00 0.00 39.87 3.28
144 146 8.497554 CCAAAGTTCACATAATTCAACCAAATG 58.502 33.333 0.00 0.00 0.00 2.32
199 202 2.004733 GTTCGCGGCCATACTTTTACT 58.995 47.619 6.13 0.00 0.00 2.24
200 203 1.267186 CGTTCGCGGCCATACTTTTAC 60.267 52.381 6.13 0.00 36.88 2.01
201 204 1.000884 CGTTCGCGGCCATACTTTTA 58.999 50.000 6.13 0.00 36.88 1.52
206 210 1.422950 TAAAGCGTTCGCGGCCATAC 61.423 55.000 6.13 0.00 41.67 2.39
209 213 0.740164 TAATAAAGCGTTCGCGGCCA 60.740 50.000 6.13 0.00 41.67 5.36
210 214 0.584876 ATAATAAAGCGTTCGCGGCC 59.415 50.000 6.13 0.00 41.67 6.13
211 215 2.285950 TGAATAATAAAGCGTTCGCGGC 60.286 45.455 6.13 0.89 41.67 6.53
212 216 3.579147 TGAATAATAAAGCGTTCGCGG 57.421 42.857 6.13 0.00 41.67 6.46
246 251 6.540914 CAGGTCGGCATTTTAACCTTTATCTA 59.459 38.462 0.00 0.00 40.13 1.98
255 260 9.575783 TTTTATTTATCAGGTCGGCATTTTAAC 57.424 29.630 0.00 0.00 0.00 2.01
257 262 9.575783 GTTTTTATTTATCAGGTCGGCATTTTA 57.424 29.630 0.00 0.00 0.00 1.52
262 267 4.095185 CCGTTTTTATTTATCAGGTCGGCA 59.905 41.667 0.00 0.00 0.00 5.69
263 268 4.333372 TCCGTTTTTATTTATCAGGTCGGC 59.667 41.667 0.00 0.00 35.20 5.54
299 304 6.761242 TGTCTCCAATACGTCAATCTAAATGG 59.239 38.462 0.00 0.00 0.00 3.16
305 310 5.047306 TCAAGTGTCTCCAATACGTCAATCT 60.047 40.000 0.00 0.00 0.00 2.40
309 314 3.056821 CCTCAAGTGTCTCCAATACGTCA 60.057 47.826 0.00 0.00 0.00 4.35
311 316 2.897969 ACCTCAAGTGTCTCCAATACGT 59.102 45.455 0.00 0.00 0.00 3.57
314 319 3.056107 CCGAACCTCAAGTGTCTCCAATA 60.056 47.826 0.00 0.00 0.00 1.90
319 324 1.605712 CCACCGAACCTCAAGTGTCTC 60.606 57.143 0.00 0.00 0.00 3.36
326 331 3.153825 GGGTCCACCGAACCTCAA 58.846 61.111 0.00 0.00 43.30 3.02
339 344 0.108945 CCTACGGAACAGTTCGGGTC 60.109 60.000 21.34 2.16 34.64 4.46
342 347 2.667473 ATTCCTACGGAACAGTTCGG 57.333 50.000 17.12 17.12 45.07 4.30
343 348 3.612860 CAGAATTCCTACGGAACAGTTCG 59.387 47.826 7.22 5.54 45.07 3.95
344 349 3.371285 GCAGAATTCCTACGGAACAGTTC 59.629 47.826 4.52 4.52 45.07 3.01
369 374 4.602259 CGGGCATATCCGTGCGGT 62.602 66.667 10.60 1.20 45.97 5.68
376 381 4.355925 GACCGAACGGGCATATCC 57.644 61.111 14.56 0.00 44.50 2.59
413 418 1.566018 GACGCTTTCCTGTGGAACGG 61.566 60.000 11.93 4.89 41.87 4.44
424 429 2.436824 GCCTGAGGGGACGCTTTC 60.437 66.667 0.00 0.00 37.23 2.62
436 441 2.688446 CTGTATACCGAACAGAGCCTGA 59.312 50.000 8.91 0.00 45.89 3.86
437 442 2.223829 CCTGTATACCGAACAGAGCCTG 60.224 54.545 4.84 1.16 45.89 4.85
438 443 2.032620 CCTGTATACCGAACAGAGCCT 58.967 52.381 4.84 0.00 45.89 4.58
439 444 1.068741 CCCTGTATACCGAACAGAGCC 59.931 57.143 4.84 0.00 45.89 4.70
440 445 2.029623 TCCCTGTATACCGAACAGAGC 58.970 52.381 4.84 0.00 45.89 4.09
441 446 4.939052 AATCCCTGTATACCGAACAGAG 57.061 45.455 4.84 0.00 45.89 3.35
442 447 4.202080 CGAAATCCCTGTATACCGAACAGA 60.202 45.833 4.84 0.00 45.89 3.41
443 448 4.049186 CGAAATCCCTGTATACCGAACAG 58.951 47.826 0.00 0.00 43.26 3.16
444 449 3.738899 GCGAAATCCCTGTATACCGAACA 60.739 47.826 0.00 0.00 0.00 3.18
445 450 2.798847 GCGAAATCCCTGTATACCGAAC 59.201 50.000 0.00 0.00 0.00 3.95
446 451 2.431419 TGCGAAATCCCTGTATACCGAA 59.569 45.455 0.00 0.00 0.00 4.30
447 452 2.033372 TGCGAAATCCCTGTATACCGA 58.967 47.619 0.00 0.00 0.00 4.69
448 453 2.404215 CTGCGAAATCCCTGTATACCG 58.596 52.381 0.00 0.00 0.00 4.02
449 454 2.367567 TCCTGCGAAATCCCTGTATACC 59.632 50.000 0.00 0.00 0.00 2.73
450 455 3.746045 TCCTGCGAAATCCCTGTATAC 57.254 47.619 0.00 0.00 0.00 1.47
451 456 4.974645 AATCCTGCGAAATCCCTGTATA 57.025 40.909 0.00 0.00 0.00 1.47
452 457 3.864789 AATCCTGCGAAATCCCTGTAT 57.135 42.857 0.00 0.00 0.00 2.29
453 458 3.644966 AAATCCTGCGAAATCCCTGTA 57.355 42.857 0.00 0.00 0.00 2.74
454 459 2.514458 AAATCCTGCGAAATCCCTGT 57.486 45.000 0.00 0.00 0.00 4.00
455 460 3.874392 AAAAATCCTGCGAAATCCCTG 57.126 42.857 0.00 0.00 0.00 4.45
472 477 3.628832 AGGAAACTCATCCCCCAAAAA 57.371 42.857 0.00 0.00 40.59 1.94
473 478 3.628832 AAGGAAACTCATCCCCCAAAA 57.371 42.857 0.00 0.00 42.68 2.44
474 479 3.011257 CCTAAGGAAACTCATCCCCCAAA 59.989 47.826 0.00 0.00 42.68 3.28
475 480 2.580783 CCTAAGGAAACTCATCCCCCAA 59.419 50.000 0.00 0.00 42.68 4.12
476 481 2.205342 CCTAAGGAAACTCATCCCCCA 58.795 52.381 0.00 0.00 42.68 4.96
477 482 2.488836 TCCTAAGGAAACTCATCCCCC 58.511 52.381 0.00 0.00 42.68 5.40
478 483 4.797912 ATTCCTAAGGAAACTCATCCCC 57.202 45.455 0.00 0.00 45.41 4.81
479 484 6.427441 AGAAATTCCTAAGGAAACTCATCCC 58.573 40.000 0.00 0.00 45.41 3.85
480 485 7.499563 GGTAGAAATTCCTAAGGAAACTCATCC 59.500 40.741 0.00 0.00 45.41 3.51
481 486 7.499563 GGGTAGAAATTCCTAAGGAAACTCATC 59.500 40.741 0.00 0.00 45.41 2.92
482 487 7.036863 TGGGTAGAAATTCCTAAGGAAACTCAT 60.037 37.037 0.00 0.00 45.41 2.90
483 488 6.273730 TGGGTAGAAATTCCTAAGGAAACTCA 59.726 38.462 0.00 0.00 45.41 3.41
484 489 6.598457 GTGGGTAGAAATTCCTAAGGAAACTC 59.402 42.308 0.00 0.00 45.41 3.01
485 490 6.045106 TGTGGGTAGAAATTCCTAAGGAAACT 59.955 38.462 0.00 0.00 45.41 2.66
486 491 6.243148 TGTGGGTAGAAATTCCTAAGGAAAC 58.757 40.000 0.00 0.00 45.41 2.78
487 492 6.045106 ACTGTGGGTAGAAATTCCTAAGGAAA 59.955 38.462 0.00 0.00 45.41 3.13
488 493 5.550403 ACTGTGGGTAGAAATTCCTAAGGAA 59.450 40.000 0.00 0.00 46.39 3.36
489 494 5.045869 CACTGTGGGTAGAAATTCCTAAGGA 60.046 44.000 0.00 0.00 0.00 3.36
490 495 5.186198 CACTGTGGGTAGAAATTCCTAAGG 58.814 45.833 0.00 0.00 0.00 2.69
491 496 4.636206 GCACTGTGGGTAGAAATTCCTAAG 59.364 45.833 10.21 0.00 0.00 2.18
492 497 4.585879 GCACTGTGGGTAGAAATTCCTAA 58.414 43.478 10.21 0.00 0.00 2.69
493 498 3.369052 CGCACTGTGGGTAGAAATTCCTA 60.369 47.826 15.88 0.00 0.00 2.94
494 499 2.615493 CGCACTGTGGGTAGAAATTCCT 60.615 50.000 15.88 0.00 0.00 3.36
495 500 1.737793 CGCACTGTGGGTAGAAATTCC 59.262 52.381 15.88 0.00 0.00 3.01
496 501 2.423577 ACGCACTGTGGGTAGAAATTC 58.576 47.619 26.34 0.00 41.98 2.17
497 502 2.561478 ACGCACTGTGGGTAGAAATT 57.439 45.000 26.34 2.56 41.98 1.82
498 503 2.423577 GAACGCACTGTGGGTAGAAAT 58.576 47.619 27.45 13.89 43.03 2.17
499 504 1.870580 CGAACGCACTGTGGGTAGAAA 60.871 52.381 27.45 0.00 43.03 2.52
500 505 0.319211 CGAACGCACTGTGGGTAGAA 60.319 55.000 27.45 0.00 43.03 2.10
501 506 1.287815 CGAACGCACTGTGGGTAGA 59.712 57.895 27.45 0.00 43.03 2.59
502 507 0.599204 AACGAACGCACTGTGGGTAG 60.599 55.000 27.45 24.50 43.03 3.18
503 508 0.179078 AAACGAACGCACTGTGGGTA 60.179 50.000 27.45 0.00 43.03 3.69
504 509 1.027792 AAAACGAACGCACTGTGGGT 61.028 50.000 22.83 22.83 45.92 4.51
505 510 0.591236 CAAAACGAACGCACTGTGGG 60.591 55.000 21.50 21.50 36.28 4.61
506 511 0.591236 CCAAAACGAACGCACTGTGG 60.591 55.000 10.21 2.45 0.00 4.17
507 512 0.375454 TCCAAAACGAACGCACTGTG 59.625 50.000 2.76 2.76 0.00 3.66
508 513 0.655733 CTCCAAAACGAACGCACTGT 59.344 50.000 0.00 0.00 0.00 3.55
509 514 0.041312 CCTCCAAAACGAACGCACTG 60.041 55.000 0.00 0.00 0.00 3.66
510 515 0.179067 TCCTCCAAAACGAACGCACT 60.179 50.000 0.00 0.00 0.00 4.40
511 516 0.658897 TTCCTCCAAAACGAACGCAC 59.341 50.000 0.00 0.00 0.00 5.34
512 517 1.600023 ATTCCTCCAAAACGAACGCA 58.400 45.000 0.00 0.00 0.00 5.24
513 518 2.159612 GGTATTCCTCCAAAACGAACGC 60.160 50.000 0.00 0.00 0.00 4.84
514 519 2.093152 CGGTATTCCTCCAAAACGAACG 59.907 50.000 0.00 0.00 0.00 3.95
515 520 2.417586 CCGGTATTCCTCCAAAACGAAC 59.582 50.000 0.00 0.00 0.00 3.95
516 521 2.038820 ACCGGTATTCCTCCAAAACGAA 59.961 45.455 4.49 0.00 0.00 3.85
517 522 1.624813 ACCGGTATTCCTCCAAAACGA 59.375 47.619 4.49 0.00 0.00 3.85
518 523 1.735571 CACCGGTATTCCTCCAAAACG 59.264 52.381 6.87 0.00 0.00 3.60
519 524 2.089201 CCACCGGTATTCCTCCAAAAC 58.911 52.381 6.87 0.00 0.00 2.43
520 525 1.614850 GCCACCGGTATTCCTCCAAAA 60.615 52.381 6.87 0.00 0.00 2.44
521 526 0.034863 GCCACCGGTATTCCTCCAAA 60.035 55.000 6.87 0.00 0.00 3.28
522 527 1.605453 GCCACCGGTATTCCTCCAA 59.395 57.895 6.87 0.00 0.00 3.53
523 528 2.372074 GGCCACCGGTATTCCTCCA 61.372 63.158 6.87 0.00 0.00 3.86
524 529 2.070650 AGGCCACCGGTATTCCTCC 61.071 63.158 6.87 2.12 0.00 4.30
525 530 1.146263 CAGGCCACCGGTATTCCTC 59.854 63.158 6.87 0.00 0.00 3.71
526 531 1.205460 AACAGGCCACCGGTATTCCT 61.205 55.000 6.87 11.43 30.50 3.36
527 532 0.746923 GAACAGGCCACCGGTATTCC 60.747 60.000 6.87 8.96 30.50 3.01
528 533 0.746923 GGAACAGGCCACCGGTATTC 60.747 60.000 6.87 4.61 30.50 1.75
529 534 1.301954 GGAACAGGCCACCGGTATT 59.698 57.895 6.87 0.00 30.50 1.89
530 535 2.995547 GGAACAGGCCACCGGTAT 59.004 61.111 6.87 0.00 30.50 2.73
531 536 3.697747 CGGAACAGGCCACCGGTA 61.698 66.667 6.87 0.00 42.48 4.02
536 541 2.798148 ATTCCGACGGAACAGGCCAC 62.798 60.000 30.63 0.00 45.07 5.01
537 542 1.259142 TATTCCGACGGAACAGGCCA 61.259 55.000 30.63 8.13 45.07 5.36
538 543 0.808847 GTATTCCGACGGAACAGGCC 60.809 60.000 30.63 13.13 45.07 5.19
539 544 0.808847 GGTATTCCGACGGAACAGGC 60.809 60.000 30.63 19.12 45.07 4.85
540 545 0.533491 TGGTATTCCGACGGAACAGG 59.467 55.000 30.63 0.00 45.07 4.00
541 546 1.470979 CCTGGTATTCCGACGGAACAG 60.471 57.143 30.63 28.40 45.07 3.16
542 547 0.533491 CCTGGTATTCCGACGGAACA 59.467 55.000 30.63 21.96 45.07 3.18
543 548 0.808847 GCCTGGTATTCCGACGGAAC 60.809 60.000 30.63 19.78 45.07 3.62
544 549 1.518774 GCCTGGTATTCCGACGGAA 59.481 57.895 30.20 30.20 46.39 4.30
545 550 2.777972 CGCCTGGTATTCCGACGGA 61.778 63.158 13.88 13.88 36.30 4.69
546 551 2.279252 CGCCTGGTATTCCGACGG 60.279 66.667 7.84 7.84 36.30 4.79
547 552 2.279252 CCGCCTGGTATTCCGACG 60.279 66.667 0.00 0.00 36.30 5.12
548 553 1.227176 GTCCGCCTGGTATTCCGAC 60.227 63.158 0.00 0.00 36.30 4.79
549 554 2.428925 GGTCCGCCTGGTATTCCGA 61.429 63.158 0.00 0.00 36.30 4.55
550 555 2.108362 GGTCCGCCTGGTATTCCG 59.892 66.667 0.00 0.00 36.30 4.30
551 556 3.643398 AGGTCCGCCTGGTATTCC 58.357 61.111 0.00 0.00 45.05 3.01
560 565 1.154197 GTGAAAAGTACAGGTCCGCC 58.846 55.000 0.00 0.00 0.00 6.13
561 566 1.798813 CTGTGAAAAGTACAGGTCCGC 59.201 52.381 0.00 0.00 41.36 5.54
569 574 9.788960 GGATTTATCATTTCCTGTGAAAAGTAC 57.211 33.333 0.00 0.00 43.37 2.73
570 575 9.527157 TGGATTTATCATTTCCTGTGAAAAGTA 57.473 29.630 0.00 0.00 43.37 2.24
571 576 8.306761 GTGGATTTATCATTTCCTGTGAAAAGT 58.693 33.333 0.00 0.00 43.37 2.66
572 577 8.526147 AGTGGATTTATCATTTCCTGTGAAAAG 58.474 33.333 0.00 0.00 43.37 2.27
573 578 8.306038 CAGTGGATTTATCATTTCCTGTGAAAA 58.694 33.333 0.00 0.00 43.37 2.29
574 579 7.093814 CCAGTGGATTTATCATTTCCTGTGAAA 60.094 37.037 1.68 0.00 44.22 2.69
575 580 6.377996 CCAGTGGATTTATCATTTCCTGTGAA 59.622 38.462 1.68 0.00 0.00 3.18
576 581 5.887598 CCAGTGGATTTATCATTTCCTGTGA 59.112 40.000 1.68 0.00 0.00 3.58
577 582 5.887598 TCCAGTGGATTTATCATTTCCTGTG 59.112 40.000 8.12 0.00 0.00 3.66
578 583 6.078456 TCCAGTGGATTTATCATTTCCTGT 57.922 37.500 8.12 0.00 0.00 4.00
579 584 6.604795 AGTTCCAGTGGATTTATCATTTCCTG 59.395 38.462 14.00 0.00 0.00 3.86
580 585 6.735556 AGTTCCAGTGGATTTATCATTTCCT 58.264 36.000 14.00 0.00 0.00 3.36
581 586 7.122650 TGAAGTTCCAGTGGATTTATCATTTCC 59.877 37.037 14.00 0.00 0.00 3.13
582 587 8.055279 TGAAGTTCCAGTGGATTTATCATTTC 57.945 34.615 14.00 9.81 0.00 2.17
583 588 8.472413 CATGAAGTTCCAGTGGATTTATCATTT 58.528 33.333 14.00 0.00 0.00 2.32
584 589 7.616935 ACATGAAGTTCCAGTGGATTTATCATT 59.383 33.333 14.00 8.84 0.00 2.57
585 590 7.121382 ACATGAAGTTCCAGTGGATTTATCAT 58.879 34.615 14.00 16.48 0.00 2.45
586 591 6.484288 ACATGAAGTTCCAGTGGATTTATCA 58.516 36.000 14.00 15.01 0.00 2.15
587 592 7.094205 ACAACATGAAGTTCCAGTGGATTTATC 60.094 37.037 14.00 9.89 38.74 1.75
588 593 6.721208 ACAACATGAAGTTCCAGTGGATTTAT 59.279 34.615 14.00 4.82 38.74 1.40
589 594 6.068010 ACAACATGAAGTTCCAGTGGATTTA 58.932 36.000 14.00 2.32 38.74 1.40
590 595 4.895297 ACAACATGAAGTTCCAGTGGATTT 59.105 37.500 14.00 10.86 38.74 2.17
591 596 4.473444 ACAACATGAAGTTCCAGTGGATT 58.527 39.130 14.00 5.02 38.74 3.01
592 597 4.074970 GACAACATGAAGTTCCAGTGGAT 58.925 43.478 14.00 0.00 38.74 3.41
593 598 3.476552 GACAACATGAAGTTCCAGTGGA 58.523 45.455 8.12 8.12 38.74 4.02
594 599 2.224079 CGACAACATGAAGTTCCAGTGG 59.776 50.000 1.40 1.40 38.74 4.00
595 600 2.349817 GCGACAACATGAAGTTCCAGTG 60.350 50.000 0.00 0.00 38.74 3.66
596 601 1.873591 GCGACAACATGAAGTTCCAGT 59.126 47.619 0.00 0.00 38.74 4.00
597 602 1.136252 CGCGACAACATGAAGTTCCAG 60.136 52.381 0.00 0.00 38.74 3.86
598 603 0.865111 CGCGACAACATGAAGTTCCA 59.135 50.000 0.00 0.00 38.74 3.53
599 604 0.165944 CCGCGACAACATGAAGTTCC 59.834 55.000 8.23 0.00 38.74 3.62
600 605 1.126846 CTCCGCGACAACATGAAGTTC 59.873 52.381 8.23 0.00 38.74 3.01
601 606 1.148310 CTCCGCGACAACATGAAGTT 58.852 50.000 8.23 0.00 42.42 2.66
602 607 0.670546 CCTCCGCGACAACATGAAGT 60.671 55.000 8.23 0.00 0.00 3.01
603 608 1.970917 GCCTCCGCGACAACATGAAG 61.971 60.000 8.23 0.00 0.00 3.02
604 609 2.032634 GCCTCCGCGACAACATGAA 61.033 57.895 8.23 0.00 0.00 2.57
605 610 2.434185 GCCTCCGCGACAACATGA 60.434 61.111 8.23 0.00 0.00 3.07
606 611 3.499737 GGCCTCCGCGACAACATG 61.500 66.667 8.23 0.00 35.02 3.21
607 612 4.778143 GGGCCTCCGCGACAACAT 62.778 66.667 8.23 0.00 35.02 2.71
622 627 2.107953 GCAAGAGCTAGCCTCGGG 59.892 66.667 12.13 7.30 45.54 5.14
632 637 0.390472 AACCGCACTAGAGCAAGAGC 60.390 55.000 12.77 0.00 42.56 4.09
633 638 1.067565 TGAACCGCACTAGAGCAAGAG 60.068 52.381 12.77 0.58 0.00 2.85
634 639 0.966179 TGAACCGCACTAGAGCAAGA 59.034 50.000 12.77 0.00 0.00 3.02
635 640 1.354040 CTGAACCGCACTAGAGCAAG 58.646 55.000 12.77 5.40 0.00 4.01
636 641 0.670546 GCTGAACCGCACTAGAGCAA 60.671 55.000 12.77 0.00 0.00 3.91
637 642 1.079819 GCTGAACCGCACTAGAGCA 60.080 57.895 12.77 0.00 0.00 4.26
638 643 1.811679 GGCTGAACCGCACTAGAGC 60.812 63.158 1.54 1.54 0.00 4.09
639 644 4.504132 GGCTGAACCGCACTAGAG 57.496 61.111 0.00 0.00 0.00 2.43
648 653 3.769536 CCATTGTTTATTCGGCTGAACC 58.230 45.455 10.90 0.00 36.81 3.62
649 654 3.179048 GCCATTGTTTATTCGGCTGAAC 58.821 45.455 10.90 0.00 39.73 3.18
650 655 3.502191 GCCATTGTTTATTCGGCTGAA 57.498 42.857 11.11 11.11 39.73 3.02
654 659 1.135141 TGCAGCCATTGTTTATTCGGC 60.135 47.619 0.00 0.00 43.31 5.54
655 660 2.937469 TGCAGCCATTGTTTATTCGG 57.063 45.000 0.00 0.00 0.00 4.30
656 661 3.117794 CCATGCAGCCATTGTTTATTCG 58.882 45.455 0.00 0.00 0.00 3.34
657 662 3.132646 TCCCATGCAGCCATTGTTTATTC 59.867 43.478 0.00 0.00 0.00 1.75
658 663 3.106054 TCCCATGCAGCCATTGTTTATT 58.894 40.909 0.00 0.00 0.00 1.40
659 664 2.696707 CTCCCATGCAGCCATTGTTTAT 59.303 45.455 0.00 0.00 0.00 1.40
660 665 2.101783 CTCCCATGCAGCCATTGTTTA 58.898 47.619 0.00 0.00 0.00 2.01
661 666 0.899720 CTCCCATGCAGCCATTGTTT 59.100 50.000 0.00 0.00 0.00 2.83
662 667 0.974010 CCTCCCATGCAGCCATTGTT 60.974 55.000 0.00 0.00 0.00 2.83
663 668 1.380785 CCTCCCATGCAGCCATTGT 60.381 57.895 0.00 0.00 0.00 2.71
664 669 1.380785 ACCTCCCATGCAGCCATTG 60.381 57.895 0.00 0.00 0.00 2.82
665 670 1.076485 GACCTCCCATGCAGCCATT 60.076 57.895 0.00 0.00 0.00 3.16
666 671 1.652187 ATGACCTCCCATGCAGCCAT 61.652 55.000 0.00 0.00 0.00 4.40
667 672 2.274948 GATGACCTCCCATGCAGCCA 62.275 60.000 0.00 0.00 0.00 4.75
668 673 1.527844 GATGACCTCCCATGCAGCC 60.528 63.158 0.00 0.00 0.00 4.85
669 674 1.099879 GTGATGACCTCCCATGCAGC 61.100 60.000 0.00 0.00 0.00 5.25
670 675 0.545171 AGTGATGACCTCCCATGCAG 59.455 55.000 0.00 0.00 0.00 4.41
671 676 0.994247 AAGTGATGACCTCCCATGCA 59.006 50.000 0.00 0.00 0.00 3.96
672 677 1.211457 AGAAGTGATGACCTCCCATGC 59.789 52.381 0.00 0.00 0.00 4.06
673 678 4.760530 TTAGAAGTGATGACCTCCCATG 57.239 45.455 0.00 0.00 0.00 3.66
674 679 5.032846 TCTTTAGAAGTGATGACCTCCCAT 58.967 41.667 0.00 0.00 0.00 4.00
675 680 4.223032 GTCTTTAGAAGTGATGACCTCCCA 59.777 45.833 0.00 0.00 0.00 4.37
676 681 4.223032 TGTCTTTAGAAGTGATGACCTCCC 59.777 45.833 0.00 0.00 0.00 4.30
677 682 5.407407 TGTCTTTAGAAGTGATGACCTCC 57.593 43.478 0.00 0.00 0.00 4.30
678 683 9.436957 TTTATTGTCTTTAGAAGTGATGACCTC 57.563 33.333 0.00 0.00 0.00 3.85
679 684 9.793259 TTTTATTGTCTTTAGAAGTGATGACCT 57.207 29.630 0.00 0.00 0.00 3.85
703 708 6.369065 CGTCCTTACTGCTGATTAGAGTTTTT 59.631 38.462 0.00 0.00 0.00 1.94
704 709 5.869888 CGTCCTTACTGCTGATTAGAGTTTT 59.130 40.000 0.00 0.00 0.00 2.43
705 710 5.411781 CGTCCTTACTGCTGATTAGAGTTT 58.588 41.667 0.00 0.00 0.00 2.66
706 711 4.678309 GCGTCCTTACTGCTGATTAGAGTT 60.678 45.833 0.00 0.00 0.00 3.01
707 712 3.181485 GCGTCCTTACTGCTGATTAGAGT 60.181 47.826 0.00 0.00 0.00 3.24
708 713 3.376540 GCGTCCTTACTGCTGATTAGAG 58.623 50.000 0.00 0.00 0.00 2.43
709 714 2.100916 GGCGTCCTTACTGCTGATTAGA 59.899 50.000 0.00 0.00 0.00 2.10
710 715 2.474816 GGCGTCCTTACTGCTGATTAG 58.525 52.381 0.00 0.00 0.00 1.73
711 716 1.138266 GGGCGTCCTTACTGCTGATTA 59.862 52.381 0.00 0.00 0.00 1.75
712 717 0.107654 GGGCGTCCTTACTGCTGATT 60.108 55.000 0.00 0.00 0.00 2.57
713 718 1.264749 TGGGCGTCCTTACTGCTGAT 61.265 55.000 7.97 0.00 0.00 2.90
714 719 1.264749 ATGGGCGTCCTTACTGCTGA 61.265 55.000 7.97 0.00 0.00 4.26
715 720 0.811616 GATGGGCGTCCTTACTGCTG 60.812 60.000 7.97 0.00 0.00 4.41
716 721 1.522569 GATGGGCGTCCTTACTGCT 59.477 57.895 7.97 0.00 0.00 4.24
717 722 1.523938 GGATGGGCGTCCTTACTGC 60.524 63.158 7.97 0.00 35.32 4.40
718 723 1.146263 GGGATGGGCGTCCTTACTG 59.854 63.158 7.97 0.00 38.38 2.74
719 724 1.003051 AGGGATGGGCGTCCTTACT 59.997 57.895 7.97 0.00 38.38 2.24
720 725 1.446366 GAGGGATGGGCGTCCTTAC 59.554 63.158 7.97 0.05 38.38 2.34
721 726 1.764854 GGAGGGATGGGCGTCCTTA 60.765 63.158 7.97 0.00 38.38 2.69
722 727 3.090532 GGAGGGATGGGCGTCCTT 61.091 66.667 7.97 0.00 38.38 3.36
723 728 3.721172 ATGGAGGGATGGGCGTCCT 62.721 63.158 7.97 0.00 38.38 3.85
724 729 3.171388 ATGGAGGGATGGGCGTCC 61.171 66.667 0.00 0.00 37.56 4.79
725 730 2.427753 GATGGAGGGATGGGCGTC 59.572 66.667 0.00 0.00 0.00 5.19
726 731 3.550431 CGATGGAGGGATGGGCGT 61.550 66.667 0.00 0.00 0.00 5.68
727 732 4.996434 GCGATGGAGGGATGGGCG 62.996 72.222 0.00 0.00 0.00 6.13
728 733 3.877450 TGCGATGGAGGGATGGGC 61.877 66.667 0.00 0.00 0.00 5.36
729 734 2.111878 GTGCGATGGAGGGATGGG 59.888 66.667 0.00 0.00 0.00 4.00
730 735 1.070445 GAGTGCGATGGAGGGATGG 59.930 63.158 0.00 0.00 0.00 3.51
731 736 1.070445 GGAGTGCGATGGAGGGATG 59.930 63.158 0.00 0.00 0.00 3.51
732 737 0.982852 TTGGAGTGCGATGGAGGGAT 60.983 55.000 0.00 0.00 0.00 3.85
733 738 1.612146 TTGGAGTGCGATGGAGGGA 60.612 57.895 0.00 0.00 0.00 4.20
734 739 1.153289 CTTGGAGTGCGATGGAGGG 60.153 63.158 0.00 0.00 0.00 4.30
735 740 1.153289 CCTTGGAGTGCGATGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
736 741 0.467384 ATCCTTGGAGTGCGATGGAG 59.533 55.000 0.00 0.00 31.32 3.86
737 742 0.911769 AATCCTTGGAGTGCGATGGA 59.088 50.000 0.00 0.00 32.13 3.41
738 743 1.303309 GAATCCTTGGAGTGCGATGG 58.697 55.000 0.00 0.00 0.00 3.51
739 744 1.134280 AGGAATCCTTGGAGTGCGATG 60.134 52.381 0.00 0.00 0.00 3.84
740 745 1.207791 AGGAATCCTTGGAGTGCGAT 58.792 50.000 0.00 0.00 0.00 4.58
741 746 1.860641 TAGGAATCCTTGGAGTGCGA 58.139 50.000 7.30 0.00 34.61 5.10
742 747 2.918712 ATAGGAATCCTTGGAGTGCG 57.081 50.000 7.30 0.00 34.61 5.34
743 748 3.137360 AGGAATAGGAATCCTTGGAGTGC 59.863 47.826 7.30 0.38 45.06 4.40
744 749 4.712476 CAGGAATAGGAATCCTTGGAGTG 58.288 47.826 7.30 0.00 45.06 3.51
745 750 3.137360 GCAGGAATAGGAATCCTTGGAGT 59.863 47.826 7.30 0.00 45.06 3.85
746 751 3.137176 TGCAGGAATAGGAATCCTTGGAG 59.863 47.826 7.30 0.00 45.06 3.86
747 752 3.122480 TGCAGGAATAGGAATCCTTGGA 58.878 45.455 7.30 0.00 45.06 3.53
748 753 3.582998 TGCAGGAATAGGAATCCTTGG 57.417 47.619 7.30 0.00 45.06 3.61
749 754 5.278169 CGATTTGCAGGAATAGGAATCCTTG 60.278 44.000 7.30 0.00 45.06 3.61
750 755 4.823989 CGATTTGCAGGAATAGGAATCCTT 59.176 41.667 7.30 0.00 45.06 3.36
752 757 4.389374 TCGATTTGCAGGAATAGGAATCC 58.611 43.478 0.00 0.00 37.22 3.01
753 758 5.296780 TGTTCGATTTGCAGGAATAGGAATC 59.703 40.000 0.00 0.00 0.00 2.52
754 759 5.192927 TGTTCGATTTGCAGGAATAGGAAT 58.807 37.500 0.00 0.00 0.00 3.01
755 760 4.584874 TGTTCGATTTGCAGGAATAGGAA 58.415 39.130 0.00 0.00 0.00 3.36
756 761 4.191544 CTGTTCGATTTGCAGGAATAGGA 58.808 43.478 0.00 0.00 0.00 2.94
757 762 4.542662 CTGTTCGATTTGCAGGAATAGG 57.457 45.455 0.00 0.00 0.00 2.57
764 769 0.597568 TTGGCCTGTTCGATTTGCAG 59.402 50.000 3.32 0.00 0.00 4.41
765 770 1.035923 TTTGGCCTGTTCGATTTGCA 58.964 45.000 3.32 0.00 0.00 4.08
766 771 2.061028 CTTTTGGCCTGTTCGATTTGC 58.939 47.619 3.32 0.00 0.00 3.68
767 772 2.676076 CCTTTTGGCCTGTTCGATTTG 58.324 47.619 3.32 0.00 0.00 2.32
780 785 0.961753 GAACCTGTGGAGCCTTTTGG 59.038 55.000 0.00 0.00 44.18 3.28
781 786 0.593128 CGAACCTGTGGAGCCTTTTG 59.407 55.000 0.00 0.00 0.00 2.44
782 787 1.172812 GCGAACCTGTGGAGCCTTTT 61.173 55.000 0.00 0.00 0.00 2.27
783 788 1.600916 GCGAACCTGTGGAGCCTTT 60.601 57.895 0.00 0.00 0.00 3.11
784 789 2.032681 GCGAACCTGTGGAGCCTT 59.967 61.111 0.00 0.00 0.00 4.35
785 790 2.925170 AGCGAACCTGTGGAGCCT 60.925 61.111 0.00 0.00 0.00 4.58
786 791 2.435059 GAGCGAACCTGTGGAGCC 60.435 66.667 0.00 0.00 0.00 4.70
787 792 1.004440 AAGAGCGAACCTGTGGAGC 60.004 57.895 0.00 0.00 0.00 4.70
788 793 0.318441 TCAAGAGCGAACCTGTGGAG 59.682 55.000 0.00 0.00 0.00 3.86
789 794 0.033504 GTCAAGAGCGAACCTGTGGA 59.966 55.000 0.00 0.00 0.00 4.02
790 795 0.249868 TGTCAAGAGCGAACCTGTGG 60.250 55.000 0.00 0.00 0.00 4.17
791 796 0.861837 GTGTCAAGAGCGAACCTGTG 59.138 55.000 0.00 0.00 0.00 3.66
792 797 0.753262 AGTGTCAAGAGCGAACCTGT 59.247 50.000 0.00 0.00 0.00 4.00
793 798 1.269778 TGAGTGTCAAGAGCGAACCTG 60.270 52.381 0.00 0.00 0.00 4.00
794 799 1.040646 TGAGTGTCAAGAGCGAACCT 58.959 50.000 0.00 0.00 0.00 3.50
795 800 1.527311 GTTGAGTGTCAAGAGCGAACC 59.473 52.381 0.00 0.00 37.00 3.62
796 801 2.473235 GAGTTGAGTGTCAAGAGCGAAC 59.527 50.000 0.00 0.00 37.00 3.95
797 802 2.362397 AGAGTTGAGTGTCAAGAGCGAA 59.638 45.455 0.00 0.00 37.00 4.70
798 803 1.957177 AGAGTTGAGTGTCAAGAGCGA 59.043 47.619 0.00 0.00 37.00 4.93
799 804 2.430546 AGAGTTGAGTGTCAAGAGCG 57.569 50.000 0.00 0.00 37.00 5.03
800 805 4.867608 GGAATAGAGTTGAGTGTCAAGAGC 59.132 45.833 0.00 0.00 37.00 4.09
801 806 6.279513 AGGAATAGAGTTGAGTGTCAAGAG 57.720 41.667 0.00 0.00 37.00 2.85
802 807 6.672266 AAGGAATAGAGTTGAGTGTCAAGA 57.328 37.500 0.00 0.00 37.00 3.02
803 808 6.348050 GCAAAGGAATAGAGTTGAGTGTCAAG 60.348 42.308 0.00 0.00 37.00 3.02
804 809 5.470098 GCAAAGGAATAGAGTTGAGTGTCAA 59.530 40.000 0.00 0.00 33.32 3.18
805 810 4.997395 GCAAAGGAATAGAGTTGAGTGTCA 59.003 41.667 0.00 0.00 0.00 3.58
806 811 4.997395 TGCAAAGGAATAGAGTTGAGTGTC 59.003 41.667 0.00 0.00 0.00 3.67
807 812 4.973168 TGCAAAGGAATAGAGTTGAGTGT 58.027 39.130 0.00 0.00 0.00 3.55
808 813 4.999950 ACTGCAAAGGAATAGAGTTGAGTG 59.000 41.667 0.00 0.00 0.00 3.51
809 814 5.234466 ACTGCAAAGGAATAGAGTTGAGT 57.766 39.130 0.00 0.00 0.00 3.41
810 815 7.856145 ATAACTGCAAAGGAATAGAGTTGAG 57.144 36.000 0.00 0.00 0.00 3.02
811 816 8.635765 AAATAACTGCAAAGGAATAGAGTTGA 57.364 30.769 0.00 0.00 0.00 3.18
816 821 9.920946 AGGAATAAATAACTGCAAAGGAATAGA 57.079 29.630 0.00 0.00 0.00 1.98
819 824 8.190784 CGAAGGAATAAATAACTGCAAAGGAAT 58.809 33.333 0.00 0.00 0.00 3.01
820 825 7.175990 ACGAAGGAATAAATAACTGCAAAGGAA 59.824 33.333 0.00 0.00 0.00 3.36
821 826 6.657541 ACGAAGGAATAAATAACTGCAAAGGA 59.342 34.615 0.00 0.00 0.00 3.36
822 827 6.852664 ACGAAGGAATAAATAACTGCAAAGG 58.147 36.000 0.00 0.00 0.00 3.11
823 828 8.742554 AAACGAAGGAATAAATAACTGCAAAG 57.257 30.769 0.00 0.00 0.00 2.77
824 829 9.535878 AAAAACGAAGGAATAAATAACTGCAAA 57.464 25.926 0.00 0.00 0.00 3.68
848 853 1.065851 GTTCGGTTTGGAGGCGAAAAA 59.934 47.619 0.00 0.00 0.00 1.94
849 854 0.664224 GTTCGGTTTGGAGGCGAAAA 59.336 50.000 0.00 0.00 0.00 2.29
850 855 1.500512 CGTTCGGTTTGGAGGCGAAA 61.501 55.000 0.00 0.00 0.00 3.46
851 856 1.957186 CGTTCGGTTTGGAGGCGAA 60.957 57.895 0.00 0.00 0.00 4.70
852 857 2.356553 CGTTCGGTTTGGAGGCGA 60.357 61.111 0.00 0.00 0.00 5.54
853 858 1.897398 CTTCGTTCGGTTTGGAGGCG 61.897 60.000 0.00 0.00 0.00 5.52
854 859 1.866925 CTTCGTTCGGTTTGGAGGC 59.133 57.895 0.00 0.00 0.00 4.70
855 860 1.574702 GGCTTCGTTCGGTTTGGAGG 61.575 60.000 0.00 0.00 0.00 4.30
856 861 0.602905 AGGCTTCGTTCGGTTTGGAG 60.603 55.000 0.00 0.00 0.00 3.86
857 862 0.601841 GAGGCTTCGTTCGGTTTGGA 60.602 55.000 0.00 0.00 0.00 3.53
858 863 0.882927 TGAGGCTTCGTTCGGTTTGG 60.883 55.000 0.00 0.00 0.00 3.28
859 864 0.941542 TTGAGGCTTCGTTCGGTTTG 59.058 50.000 0.00 0.00 0.00 2.93
860 865 0.942252 GTTGAGGCTTCGTTCGGTTT 59.058 50.000 0.00 0.00 0.00 3.27
861 866 0.883370 GGTTGAGGCTTCGTTCGGTT 60.883 55.000 0.00 0.00 0.00 4.44
862 867 1.301479 GGTTGAGGCTTCGTTCGGT 60.301 57.895 0.00 0.00 0.00 4.69
863 868 1.004918 AGGTTGAGGCTTCGTTCGG 60.005 57.895 0.00 0.00 0.00 4.30
864 869 1.901650 GCAGGTTGAGGCTTCGTTCG 61.902 60.000 0.00 0.00 0.00 3.95
865 870 0.884704 TGCAGGTTGAGGCTTCGTTC 60.885 55.000 0.00 0.00 0.00 3.95
866 871 1.148273 TGCAGGTTGAGGCTTCGTT 59.852 52.632 0.00 0.00 0.00 3.85
867 872 1.598130 GTGCAGGTTGAGGCTTCGT 60.598 57.895 0.00 0.00 0.00 3.85
868 873 0.886490 AAGTGCAGGTTGAGGCTTCG 60.886 55.000 0.00 0.00 0.00 3.79
869 874 0.877743 GAAGTGCAGGTTGAGGCTTC 59.122 55.000 0.00 0.00 0.00 3.86
870 875 0.475906 AGAAGTGCAGGTTGAGGCTT 59.524 50.000 0.00 0.00 0.00 4.35
871 876 0.036022 GAGAAGTGCAGGTTGAGGCT 59.964 55.000 0.00 0.00 0.00 4.58
872 877 0.250467 TGAGAAGTGCAGGTTGAGGC 60.250 55.000 0.00 0.00 0.00 4.70
888 894 3.242870 GCAGATGCTATTTTTCCCGTGAG 60.243 47.826 0.00 0.00 38.21 3.51
889 895 2.682856 GCAGATGCTATTTTTCCCGTGA 59.317 45.455 0.00 0.00 38.21 4.35
941 950 2.364317 TGGAGGAGCGAGGGAAGG 60.364 66.667 0.00 0.00 0.00 3.46
987 996 1.410737 CGTCCATGTCGATTTCGCGT 61.411 55.000 5.77 0.00 39.60 6.01
1102 1111 4.267536 TCTCCAAATTGCAGATCTTCCAG 58.732 43.478 0.00 0.00 0.00 3.86
1103 1112 4.305539 TCTCCAAATTGCAGATCTTCCA 57.694 40.909 0.00 0.00 0.00 3.53
1122 1131 1.273495 TGCCAGATCTCCTGACCTTCT 60.273 52.381 0.00 0.00 45.78 2.85
1187 1197 9.736023 AAATGTTCAACAGTAAATCAAGACTTC 57.264 29.630 0.00 0.00 0.00 3.01
1190 1200 8.856490 ACAAATGTTCAACAGTAAATCAAGAC 57.144 30.769 0.00 0.00 0.00 3.01
1225 1235 6.374565 ACATGCAAAGAGAAATAGATCTGC 57.625 37.500 5.18 0.00 0.00 4.26
1244 1254 2.724977 AGTCTGTCACACCGTACATG 57.275 50.000 0.00 0.00 0.00 3.21
1324 1338 0.673022 CCAGAACTCTGCTCCACAGC 60.673 60.000 0.89 0.00 46.76 4.40
1396 1414 2.125713 CATGCACGGTCGCCTGTA 60.126 61.111 0.00 0.00 0.00 2.74
1417 1438 6.925211 ACTAATATGCGTATACATCAGTGCT 58.075 36.000 3.32 0.00 0.00 4.40
1441 1465 6.639686 CGCTATAGCTGAACCGAAGTTAAATA 59.360 38.462 21.98 0.00 36.00 1.40
1449 1473 1.202371 CCACGCTATAGCTGAACCGAA 60.202 52.381 21.98 0.00 39.32 4.30
1479 1505 1.773052 AGTGCATAGCTGGATGTGGAT 59.227 47.619 0.00 0.00 0.00 3.41
1480 1506 1.134310 CAGTGCATAGCTGGATGTGGA 60.134 52.381 0.00 0.00 0.00 4.02
1481 1507 1.306148 CAGTGCATAGCTGGATGTGG 58.694 55.000 0.00 0.00 0.00 4.17
1496 1522 7.988737 TCTACATAATTGCAAAGAATCCAGTG 58.011 34.615 1.71 0.00 0.00 3.66
1521 1547 5.544176 TCTCTGGATCTCCTAACACTGTTTT 59.456 40.000 0.00 0.00 36.82 2.43
1526 1552 5.523588 TGATTCTCTGGATCTCCTAACACT 58.476 41.667 0.00 0.00 36.82 3.55
1562 1588 6.539826 ACAGTACACATCAATGACACCATATG 59.460 38.462 0.00 0.00 31.59 1.78
1568 1594 6.368791 ACACATACAGTACACATCAATGACAC 59.631 38.462 0.00 0.00 0.00 3.67
1584 1610 8.948631 AAGAACTAATCCATACACACATACAG 57.051 34.615 0.00 0.00 0.00 2.74
1585 1611 9.811995 GTAAGAACTAATCCATACACACATACA 57.188 33.333 0.00 0.00 0.00 2.29
1586 1612 9.257651 GGTAAGAACTAATCCATACACACATAC 57.742 37.037 0.00 0.00 0.00 2.39
1587 1613 8.983789 TGGTAAGAACTAATCCATACACACATA 58.016 33.333 0.00 0.00 0.00 2.29
1588 1614 7.857456 TGGTAAGAACTAATCCATACACACAT 58.143 34.615 0.00 0.00 0.00 3.21
1674 1708 3.006110 CCTGAAACATCACAGCAAACCAT 59.994 43.478 0.00 0.00 33.40 3.55
1719 1753 2.352617 GCCCAAAACTCGCATGAAATCA 60.353 45.455 0.00 0.00 0.00 2.57
1729 1763 4.038080 GCCACGGCCCAAAACTCG 62.038 66.667 0.00 0.00 34.56 4.18
1761 1799 7.210873 CCTCTTAACATATAGGGAGTGTTGAC 58.789 42.308 0.00 0.00 36.78 3.18
1833 1871 4.286297 TGGGTAGTGAAACAATGAGAGG 57.714 45.455 0.00 0.00 41.43 3.69
2377 2596 7.995463 AGAATCTCGCTTAAGAACATAAGAC 57.005 36.000 6.67 0.00 35.35 3.01
2478 2975 3.248602 GGAAGTTCCATCGATACATGTGC 59.751 47.826 17.44 0.00 36.28 4.57
2515 3012 9.770097 GAGTAGAATGAGATGGTTGATGATTTA 57.230 33.333 0.00 0.00 0.00 1.40
2521 3018 5.901853 TCAGGAGTAGAATGAGATGGTTGAT 59.098 40.000 0.00 0.00 0.00 2.57
2707 3205 0.988832 ATCCGGCAACCCTTCAAGTA 59.011 50.000 0.00 0.00 0.00 2.24
2786 3284 6.108097 GTTGAAAACGAGAGAAACACTTCT 57.892 37.500 0.00 0.00 40.11 2.85
2842 3340 7.121315 AGCCATTAAACTAGGTGTTCTGAATTC 59.879 37.037 0.00 0.00 38.03 2.17
2860 3358 4.510205 GGGGCCTATTTCCATAGCCATTAA 60.510 45.833 0.84 0.00 33.80 1.40
2899 3397 3.031736 TCCTAGCCTAGCACCTTAACAG 58.968 50.000 0.00 0.00 0.00 3.16
2976 3477 9.710900 CACCTTAGCACTACATGATAAATGATA 57.289 33.333 0.00 0.00 38.67 2.15
2977 3478 7.173907 GCACCTTAGCACTACATGATAAATGAT 59.826 37.037 0.00 0.00 38.67 2.45
2978 3479 6.483307 GCACCTTAGCACTACATGATAAATGA 59.517 38.462 0.00 0.00 38.67 2.57
2979 3480 6.484643 AGCACCTTAGCACTACATGATAAATG 59.515 38.462 0.00 0.00 38.67 2.32
2980 3481 6.595682 AGCACCTTAGCACTACATGATAAAT 58.404 36.000 0.00 0.00 38.67 1.40
2981 3482 5.989477 AGCACCTTAGCACTACATGATAAA 58.011 37.500 0.00 0.00 38.67 1.40
3032 3533 1.656587 TCTGCCCAGGAACACATACT 58.343 50.000 0.00 0.00 0.00 2.12
3080 3581 6.088016 TCAAAAGGATTTGTGATCAAGTGG 57.912 37.500 0.00 0.00 45.02 4.00
3151 3652 3.153919 GCCTGATGTAAAGTGTTTCCCA 58.846 45.455 0.00 0.00 0.00 4.37
3152 3653 2.161609 CGCCTGATGTAAAGTGTTTCCC 59.838 50.000 0.00 0.00 0.00 3.97
3153 3654 2.812011 ACGCCTGATGTAAAGTGTTTCC 59.188 45.455 0.00 0.00 0.00 3.13
3154 3655 3.746492 AGACGCCTGATGTAAAGTGTTTC 59.254 43.478 0.00 0.00 0.00 2.78
3155 3656 3.498397 CAGACGCCTGATGTAAAGTGTTT 59.502 43.478 0.00 0.00 43.02 2.83
3156 3657 3.067106 CAGACGCCTGATGTAAAGTGTT 58.933 45.455 0.00 0.00 43.02 3.32
3157 3658 2.299013 TCAGACGCCTGATGTAAAGTGT 59.701 45.455 0.00 0.00 44.01 3.55
3158 3659 2.959516 TCAGACGCCTGATGTAAAGTG 58.040 47.619 0.00 0.00 44.01 3.16
3167 3668 2.038426 TGGAGAAAATTCAGACGCCTGA 59.962 45.455 0.00 0.00 46.95 3.86
3168 3669 2.426522 TGGAGAAAATTCAGACGCCTG 58.573 47.619 0.00 0.00 41.74 4.85
3169 3670 2.859165 TGGAGAAAATTCAGACGCCT 57.141 45.000 0.00 0.00 0.00 5.52
3170 3671 5.757850 AATATGGAGAAAATTCAGACGCC 57.242 39.130 0.00 0.00 0.00 5.68
3171 3672 7.246674 TGTAATATGGAGAAAATTCAGACGC 57.753 36.000 0.00 0.00 0.00 5.19
3188 3689 9.353431 TGCAAGACAATGAACCATATGTAATAT 57.647 29.630 1.24 0.00 41.02 1.28
3312 3813 4.503991 GCTTTACCAGATGGAGATACCCAG 60.504 50.000 5.72 0.00 39.97 4.45
3350 3851 7.385205 CCGTGGGATGTACAGAAGATATAAAAG 59.615 40.741 0.33 0.00 0.00 2.27
3359 3860 0.462047 GCCCGTGGGATGTACAGAAG 60.462 60.000 9.72 0.00 37.50 2.85
3371 3872 1.066143 ACTGATAGAACTTGCCCGTGG 60.066 52.381 0.00 0.00 0.00 4.94
3447 3948 0.320946 GTACGCCCTTGCTTACACCA 60.321 55.000 0.00 0.00 40.79 4.17
3456 3957 0.673644 CAACCAGGAGTACGCCCTTG 60.674 60.000 12.54 9.12 0.00 3.61
3457 3958 0.834687 TCAACCAGGAGTACGCCCTT 60.835 55.000 12.54 0.00 0.00 3.95
3459 3960 1.218316 CTCAACCAGGAGTACGCCC 59.782 63.158 12.54 5.62 0.00 6.13
3575 4077 2.611292 GCAGGAGTACAGCAGCTTTATG 59.389 50.000 0.00 0.00 0.00 1.90
3585 4087 1.194781 ACCACCCTGCAGGAGTACAG 61.195 60.000 34.91 18.23 39.89 2.74
3653 4155 2.682856 CAATGACCTAAACCCACATCCG 59.317 50.000 0.00 0.00 0.00 4.18
3688 4190 8.272866 CGACATATAAATATCAACGAAGCAACA 58.727 33.333 0.00 0.00 0.00 3.33
3734 4236 7.415095 CCATCCAACATGCGTTTTTCTTAGATA 60.415 37.037 0.00 0.00 31.13 1.98
3748 4250 3.429272 CCAATACACACCATCCAACATGC 60.429 47.826 0.00 0.00 0.00 4.06
3816 4318 3.058777 GGATGTGCAAAGCAACATTTTGG 60.059 43.478 0.00 0.00 41.47 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.