Multiple sequence alignment - TraesCS6A01G142100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G142100 chr6A 100.000 5990 0 0 1 5990 116906251 116912240 0.000000e+00 11062
1 TraesCS6A01G142100 chr6A 72.417 997 241 26 2182 3155 613991310 613990325 2.730000e-73 287
2 TraesCS6A01G142100 chr6B 93.935 3479 159 23 395 3850 182579207 182582656 0.000000e+00 5208
3 TraesCS6A01G142100 chr6B 96.725 1496 34 6 3859 5339 182582870 182584365 0.000000e+00 2477
4 TraesCS6A01G142100 chr6B 95.100 449 22 0 5542 5990 182584635 182585083 0.000000e+00 708
5 TraesCS6A01G142100 chr6B 73.333 1005 235 25 2183 3164 713974184 713973190 2.070000e-89 340
6 TraesCS6A01G142100 chr6D 92.433 3502 193 37 371 3850 97907874 97911325 0.000000e+00 4933
7 TraesCS6A01G142100 chr6D 97.332 1499 28 4 3851 5339 97911374 97912870 0.000000e+00 2536
8 TraesCS6A01G142100 chr1D 92.442 3255 180 33 362 3594 212373207 212369997 0.000000e+00 4588


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G142100 chr6A 116906251 116912240 5989 False 11062.000000 11062 100.000000 1 5990 1 chr6A.!!$F1 5989
1 TraesCS6A01G142100 chr6A 613990325 613991310 985 True 287.000000 287 72.417000 2182 3155 1 chr6A.!!$R1 973
2 TraesCS6A01G142100 chr6B 182579207 182585083 5876 False 2797.666667 5208 95.253333 395 5990 3 chr6B.!!$F1 5595
3 TraesCS6A01G142100 chr6B 713973190 713974184 994 True 340.000000 340 73.333000 2183 3164 1 chr6B.!!$R1 981
4 TraesCS6A01G142100 chr6D 97907874 97912870 4996 False 3734.500000 4933 94.882500 371 5339 2 chr6D.!!$F1 4968
5 TraesCS6A01G142100 chr1D 212369997 212373207 3210 True 4588.000000 4588 92.442000 362 3594 1 chr1D.!!$R1 3232

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.030235 GCTTGGTCACAACGGTTTCC 59.970 55.000 0.00 0.00 32.14 3.13 F
309 310 0.172803 GTTTCCGAGAGCCGCTTCTA 59.827 55.000 0.00 0.00 36.84 2.10 F
312 313 0.385751 TCCGAGAGCCGCTTCTAATG 59.614 55.000 0.00 0.00 36.84 1.90 F
779 793 0.438445 CATTGTGTGTACGCCGTGAG 59.562 55.000 0.00 0.00 0.00 3.51 F
809 823 1.060698 GCGTTCACCGTTTAGCATCTC 59.939 52.381 0.00 0.00 39.32 2.75 F
1268 1288 1.135699 GCGTCGCAATTGCAATCCTG 61.136 55.000 28.77 9.58 42.21 3.86 F
1280 1300 1.745141 GCAATCCTGTGGAGTAGGCAG 60.745 57.143 0.00 0.00 34.05 4.85 F
1578 1600 2.047274 TGTTGCTACGAGCCAGGC 60.047 61.111 1.84 1.84 41.51 4.85 F
3583 3650 0.512518 TTTGCAGTCGTCTTGATGCG 59.487 50.000 0.00 0.00 41.58 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1280 1300 0.251787 AGACCCCCATTTGCTTGACC 60.252 55.000 0.00 0.00 0.00 4.02 R
1394 1415 1.361204 TCTCCAATCAGCACCAGGAA 58.639 50.000 0.00 0.00 0.00 3.36 R
1426 1447 3.073650 AGAGAGAAGGTGCAAATTCAGGT 59.926 43.478 13.08 0.00 0.00 4.00 R
1926 1948 6.875948 ACATAAATATGAGTTAATGCGGCA 57.124 33.333 4.58 4.58 37.15 5.69 R
1974 2012 7.071698 ACCCTACCATATATCAAGGCTATGATG 59.928 40.741 17.08 0.81 40.21 3.07 R
3203 3259 1.111277 AGCCAAAAGTTGCGAAGGTT 58.889 45.000 0.00 0.00 0.00 3.50 R
3583 3650 4.448537 AGCACTCTGAGTCACTGATTAC 57.551 45.455 7.49 0.00 0.00 1.89 R
3643 3710 1.004044 CTTGATGTCCTCCCAGTGCTT 59.996 52.381 0.00 0.00 0.00 3.91 R
5753 6107 0.040067 GATCCATTTCGCCCGAATGC 60.040 55.000 3.77 0.00 33.79 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 4.442018 GGTGGTCACCGACGAAAA 57.558 55.556 4.22 0.00 42.29 2.29
25 26 2.692817 GGTGGTCACCGACGAAAAA 58.307 52.632 4.22 0.00 42.29 1.94
26 27 0.584876 GGTGGTCACCGACGAAAAAG 59.415 55.000 4.22 0.00 42.29 2.27
27 28 0.041576 GTGGTCACCGACGAAAAAGC 60.042 55.000 0.00 0.00 32.65 3.51
28 29 1.203313 GGTCACCGACGAAAAAGCG 59.797 57.895 0.00 0.00 32.65 4.68
29 30 1.438222 GTCACCGACGAAAAAGCGC 60.438 57.895 0.00 0.00 33.86 5.92
30 31 1.883544 TCACCGACGAAAAAGCGCA 60.884 52.632 11.47 0.00 33.86 6.09
31 32 1.721133 CACCGACGAAAAAGCGCAC 60.721 57.895 11.47 0.00 33.86 5.34
32 33 2.174969 ACCGACGAAAAAGCGCACA 61.175 52.632 11.47 0.00 33.86 4.57
33 34 1.010574 CCGACGAAAAAGCGCACAA 60.011 52.632 11.47 0.00 33.86 3.33
34 35 0.991770 CCGACGAAAAAGCGCACAAG 60.992 55.000 11.47 0.00 33.86 3.16
35 36 0.042535 CGACGAAAAAGCGCACAAGA 60.043 50.000 11.47 0.00 33.86 3.02
36 37 1.663494 GACGAAAAAGCGCACAAGAG 58.337 50.000 11.47 0.00 33.86 2.85
37 38 1.003866 GACGAAAAAGCGCACAAGAGT 60.004 47.619 11.47 2.18 33.86 3.24
38 39 1.003866 ACGAAAAAGCGCACAAGAGTC 60.004 47.619 11.47 0.00 33.86 3.36
39 40 1.003972 CGAAAAAGCGCACAAGAGTCA 60.004 47.619 11.47 0.00 0.00 3.41
40 41 2.644078 GAAAAAGCGCACAAGAGTCAG 58.356 47.619 11.47 0.00 0.00 3.51
41 42 0.308993 AAAAGCGCACAAGAGTCAGC 59.691 50.000 11.47 0.00 0.00 4.26
44 45 2.356313 CGCACAAGAGTCAGCGGT 60.356 61.111 10.24 0.00 45.83 5.68
45 46 1.956170 CGCACAAGAGTCAGCGGTT 60.956 57.895 10.24 0.00 45.83 4.44
46 47 1.498865 CGCACAAGAGTCAGCGGTTT 61.499 55.000 10.24 0.00 45.83 3.27
47 48 0.040958 GCACAAGAGTCAGCGGTTTG 60.041 55.000 0.00 0.00 0.00 2.93
48 49 0.588252 CACAAGAGTCAGCGGTTTGG 59.412 55.000 0.00 0.00 0.00 3.28
49 50 1.166531 ACAAGAGTCAGCGGTTTGGC 61.167 55.000 0.00 0.00 0.00 4.52
50 51 0.886490 CAAGAGTCAGCGGTTTGGCT 60.886 55.000 0.00 0.00 46.13 4.75
51 52 0.685097 AAGAGTCAGCGGTTTGGCTA 59.315 50.000 0.00 0.00 42.53 3.93
52 53 0.905357 AGAGTCAGCGGTTTGGCTAT 59.095 50.000 0.00 0.00 42.53 2.97
53 54 1.009829 GAGTCAGCGGTTTGGCTATG 58.990 55.000 0.00 0.00 42.53 2.23
54 55 0.392998 AGTCAGCGGTTTGGCTATGG 60.393 55.000 0.00 0.00 42.53 2.74
55 56 0.676782 GTCAGCGGTTTGGCTATGGT 60.677 55.000 0.00 0.00 42.53 3.55
56 57 0.037590 TCAGCGGTTTGGCTATGGTT 59.962 50.000 0.00 0.00 42.53 3.67
57 58 0.887933 CAGCGGTTTGGCTATGGTTT 59.112 50.000 0.00 0.00 42.53 3.27
58 59 0.887933 AGCGGTTTGGCTATGGTTTG 59.112 50.000 0.00 0.00 42.62 2.93
59 60 0.108851 GCGGTTTGGCTATGGTTTGG 60.109 55.000 0.00 0.00 0.00 3.28
60 61 1.253100 CGGTTTGGCTATGGTTTGGT 58.747 50.000 0.00 0.00 0.00 3.67
61 62 1.616374 CGGTTTGGCTATGGTTTGGTT 59.384 47.619 0.00 0.00 0.00 3.67
62 63 2.609244 CGGTTTGGCTATGGTTTGGTTG 60.609 50.000 0.00 0.00 0.00 3.77
63 64 2.367241 GGTTTGGCTATGGTTTGGTTGT 59.633 45.455 0.00 0.00 0.00 3.32
64 65 3.389221 GTTTGGCTATGGTTTGGTTGTG 58.611 45.455 0.00 0.00 0.00 3.33
65 66 1.626686 TGGCTATGGTTTGGTTGTGG 58.373 50.000 0.00 0.00 0.00 4.17
66 67 1.145945 TGGCTATGGTTTGGTTGTGGA 59.854 47.619 0.00 0.00 0.00 4.02
67 68 2.243810 GGCTATGGTTTGGTTGTGGAA 58.756 47.619 0.00 0.00 0.00 3.53
68 69 2.831526 GGCTATGGTTTGGTTGTGGAAT 59.168 45.455 0.00 0.00 0.00 3.01
69 70 4.020543 GGCTATGGTTTGGTTGTGGAATA 58.979 43.478 0.00 0.00 0.00 1.75
70 71 4.097892 GGCTATGGTTTGGTTGTGGAATAG 59.902 45.833 0.00 0.00 0.00 1.73
71 72 4.097892 GCTATGGTTTGGTTGTGGAATAGG 59.902 45.833 0.00 0.00 0.00 2.57
72 73 2.883026 TGGTTTGGTTGTGGAATAGGG 58.117 47.619 0.00 0.00 0.00 3.53
73 74 2.447429 TGGTTTGGTTGTGGAATAGGGA 59.553 45.455 0.00 0.00 0.00 4.20
74 75 3.117093 TGGTTTGGTTGTGGAATAGGGAA 60.117 43.478 0.00 0.00 0.00 3.97
75 76 3.509967 GGTTTGGTTGTGGAATAGGGAAG 59.490 47.826 0.00 0.00 0.00 3.46
76 77 3.449746 TTGGTTGTGGAATAGGGAAGG 57.550 47.619 0.00 0.00 0.00 3.46
77 78 2.354328 TGGTTGTGGAATAGGGAAGGT 58.646 47.619 0.00 0.00 0.00 3.50
78 79 2.041081 TGGTTGTGGAATAGGGAAGGTG 59.959 50.000 0.00 0.00 0.00 4.00
79 80 2.307686 GGTTGTGGAATAGGGAAGGTGA 59.692 50.000 0.00 0.00 0.00 4.02
80 81 3.245122 GGTTGTGGAATAGGGAAGGTGAA 60.245 47.826 0.00 0.00 0.00 3.18
81 82 4.010349 GTTGTGGAATAGGGAAGGTGAAG 58.990 47.826 0.00 0.00 0.00 3.02
82 83 2.576191 TGTGGAATAGGGAAGGTGAAGG 59.424 50.000 0.00 0.00 0.00 3.46
83 84 2.092375 GTGGAATAGGGAAGGTGAAGGG 60.092 54.545 0.00 0.00 0.00 3.95
84 85 2.226039 TGGAATAGGGAAGGTGAAGGGA 60.226 50.000 0.00 0.00 0.00 4.20
85 86 2.850568 GGAATAGGGAAGGTGAAGGGAA 59.149 50.000 0.00 0.00 0.00 3.97
86 87 3.268595 GGAATAGGGAAGGTGAAGGGAAA 59.731 47.826 0.00 0.00 0.00 3.13
87 88 4.264217 GGAATAGGGAAGGTGAAGGGAAAA 60.264 45.833 0.00 0.00 0.00 2.29
88 89 5.330233 GAATAGGGAAGGTGAAGGGAAAAA 58.670 41.667 0.00 0.00 0.00 1.94
110 111 8.989653 AAAAACGAACATAAACTGAAGGAAAA 57.010 26.923 0.00 0.00 0.00 2.29
111 112 8.628882 AAAACGAACATAAACTGAAGGAAAAG 57.371 30.769 0.00 0.00 0.00 2.27
112 113 7.562454 AACGAACATAAACTGAAGGAAAAGA 57.438 32.000 0.00 0.00 0.00 2.52
113 114 6.956047 ACGAACATAAACTGAAGGAAAAGAC 58.044 36.000 0.00 0.00 0.00 3.01
114 115 6.017357 ACGAACATAAACTGAAGGAAAAGACC 60.017 38.462 0.00 0.00 0.00 3.85
115 116 5.941948 ACATAAACTGAAGGAAAAGACCG 57.058 39.130 0.00 0.00 34.73 4.79
116 117 5.374071 ACATAAACTGAAGGAAAAGACCGT 58.626 37.500 0.00 0.00 34.73 4.83
117 118 5.238650 ACATAAACTGAAGGAAAAGACCGTG 59.761 40.000 0.00 0.00 34.73 4.94
118 119 1.594331 ACTGAAGGAAAAGACCGTGC 58.406 50.000 0.00 0.00 34.73 5.34
119 120 0.512952 CTGAAGGAAAAGACCGTGCG 59.487 55.000 0.00 0.00 34.73 5.34
120 121 1.206831 GAAGGAAAAGACCGTGCGC 59.793 57.895 0.00 0.00 34.73 6.09
121 122 2.183858 GAAGGAAAAGACCGTGCGCC 62.184 60.000 4.18 0.00 34.73 6.53
122 123 3.733960 GGAAAAGACCGTGCGCCC 61.734 66.667 4.18 0.00 0.00 6.13
123 124 2.975799 GAAAAGACCGTGCGCCCA 60.976 61.111 4.18 0.00 0.00 5.36
124 125 2.966309 GAAAAGACCGTGCGCCCAG 61.966 63.158 4.18 0.00 0.00 4.45
130 131 4.814294 CCGTGCGCCCAGGTACTC 62.814 72.222 4.18 0.00 34.60 2.59
131 132 4.063967 CGTGCGCCCAGGTACTCA 62.064 66.667 4.18 0.00 34.60 3.41
132 133 2.434359 GTGCGCCCAGGTACTCAC 60.434 66.667 4.18 0.00 34.60 3.51
133 134 3.702048 TGCGCCCAGGTACTCACC 61.702 66.667 4.18 0.00 46.19 4.02
141 142 4.201951 GGTACTCACCACATGCGG 57.798 61.111 0.00 0.00 45.04 5.69
142 143 1.449601 GGTACTCACCACATGCGGG 60.450 63.158 4.47 3.45 45.04 6.13
143 144 1.295423 GTACTCACCACATGCGGGT 59.705 57.895 4.47 4.15 39.88 5.28
144 145 0.533491 GTACTCACCACATGCGGGTA 59.467 55.000 9.16 0.00 36.72 3.69
145 146 0.821517 TACTCACCACATGCGGGTAG 59.178 55.000 9.16 5.82 36.72 3.18
146 147 1.192146 ACTCACCACATGCGGGTAGT 61.192 55.000 9.16 6.42 36.72 2.73
147 148 0.036388 CTCACCACATGCGGGTAGTT 60.036 55.000 9.16 0.00 36.72 2.24
148 149 0.036765 TCACCACATGCGGGTAGTTC 60.037 55.000 9.16 0.00 36.72 3.01
149 150 1.024579 CACCACATGCGGGTAGTTCC 61.025 60.000 9.16 0.00 36.72 3.62
150 151 1.198759 ACCACATGCGGGTAGTTCCT 61.199 55.000 7.83 0.00 36.72 3.36
151 152 0.828022 CCACATGCGGGTAGTTCCTA 59.172 55.000 0.00 0.00 36.25 2.94
152 153 1.202533 CCACATGCGGGTAGTTCCTAG 60.203 57.143 0.00 0.00 36.25 3.02
153 154 1.754803 CACATGCGGGTAGTTCCTAGA 59.245 52.381 0.00 0.00 36.25 2.43
154 155 2.032620 ACATGCGGGTAGTTCCTAGAG 58.967 52.381 0.00 0.00 36.25 2.43
155 156 1.041437 ATGCGGGTAGTTCCTAGAGC 58.959 55.000 0.00 0.00 36.25 4.09
156 157 1.041447 TGCGGGTAGTTCCTAGAGCC 61.041 60.000 0.00 0.00 36.25 4.70
157 158 1.041447 GCGGGTAGTTCCTAGAGCCA 61.041 60.000 0.00 0.00 36.25 4.75
158 159 1.033574 CGGGTAGTTCCTAGAGCCAG 58.966 60.000 0.00 0.00 36.25 4.85
159 160 1.409802 CGGGTAGTTCCTAGAGCCAGA 60.410 57.143 0.00 0.00 36.25 3.86
160 161 2.033372 GGGTAGTTCCTAGAGCCAGAC 58.967 57.143 0.00 0.00 36.25 3.51
161 162 2.033372 GGTAGTTCCTAGAGCCAGACC 58.967 57.143 0.00 0.00 0.00 3.85
162 163 1.677052 GTAGTTCCTAGAGCCAGACCG 59.323 57.143 0.00 0.00 0.00 4.79
163 164 0.039911 AGTTCCTAGAGCCAGACCGT 59.960 55.000 0.00 0.00 0.00 4.83
164 165 0.456628 GTTCCTAGAGCCAGACCGTC 59.543 60.000 0.00 0.00 0.00 4.79
165 166 0.683504 TTCCTAGAGCCAGACCGTCC 60.684 60.000 0.00 0.00 0.00 4.79
166 167 2.482333 CCTAGAGCCAGACCGTCCG 61.482 68.421 0.00 0.00 0.00 4.79
167 168 1.749638 CTAGAGCCAGACCGTCCGT 60.750 63.158 0.00 0.00 0.00 4.69
168 169 1.994507 CTAGAGCCAGACCGTCCGTG 61.995 65.000 0.00 0.00 0.00 4.94
171 172 3.755628 GCCAGACCGTCCGTGCTA 61.756 66.667 0.00 0.00 0.00 3.49
172 173 2.490217 CCAGACCGTCCGTGCTAG 59.510 66.667 0.00 0.00 0.00 3.42
173 174 2.341101 CCAGACCGTCCGTGCTAGT 61.341 63.158 0.00 0.00 0.00 2.57
174 175 1.585006 CAGACCGTCCGTGCTAGTT 59.415 57.895 0.00 0.00 0.00 2.24
175 176 0.806868 CAGACCGTCCGTGCTAGTTA 59.193 55.000 0.00 0.00 0.00 2.24
176 177 1.093159 AGACCGTCCGTGCTAGTTAG 58.907 55.000 0.00 0.00 0.00 2.34
177 178 1.089920 GACCGTCCGTGCTAGTTAGA 58.910 55.000 0.00 0.00 0.00 2.10
178 179 1.063764 GACCGTCCGTGCTAGTTAGAG 59.936 57.143 0.00 0.00 0.00 2.43
179 180 0.381089 CCGTCCGTGCTAGTTAGAGG 59.619 60.000 0.00 0.00 0.00 3.69
180 181 1.376543 CGTCCGTGCTAGTTAGAGGA 58.623 55.000 0.00 0.00 0.00 3.71
181 182 1.948145 CGTCCGTGCTAGTTAGAGGAT 59.052 52.381 0.00 0.00 0.00 3.24
182 183 2.358267 CGTCCGTGCTAGTTAGAGGATT 59.642 50.000 0.00 0.00 0.00 3.01
183 184 3.181489 CGTCCGTGCTAGTTAGAGGATTT 60.181 47.826 0.00 0.00 0.00 2.17
184 185 4.036027 CGTCCGTGCTAGTTAGAGGATTTA 59.964 45.833 0.00 0.00 0.00 1.40
185 186 5.521544 GTCCGTGCTAGTTAGAGGATTTAG 58.478 45.833 0.00 0.00 0.00 1.85
186 187 4.583489 TCCGTGCTAGTTAGAGGATTTAGG 59.417 45.833 0.00 0.00 0.00 2.69
187 188 4.341520 CCGTGCTAGTTAGAGGATTTAGGT 59.658 45.833 0.00 0.00 0.00 3.08
188 189 5.163437 CCGTGCTAGTTAGAGGATTTAGGTT 60.163 44.000 0.00 0.00 0.00 3.50
189 190 5.749109 CGTGCTAGTTAGAGGATTTAGGTTG 59.251 44.000 0.00 0.00 0.00 3.77
190 191 6.627508 CGTGCTAGTTAGAGGATTTAGGTTGT 60.628 42.308 0.00 0.00 0.00 3.32
191 192 7.104290 GTGCTAGTTAGAGGATTTAGGTTGTT 58.896 38.462 0.00 0.00 0.00 2.83
192 193 7.064728 GTGCTAGTTAGAGGATTTAGGTTGTTG 59.935 40.741 0.00 0.00 0.00 3.33
193 194 7.038587 TGCTAGTTAGAGGATTTAGGTTGTTGA 60.039 37.037 0.00 0.00 0.00 3.18
194 195 7.492994 GCTAGTTAGAGGATTTAGGTTGTTGAG 59.507 40.741 0.00 0.00 0.00 3.02
195 196 6.174049 AGTTAGAGGATTTAGGTTGTTGAGC 58.826 40.000 0.00 0.00 0.00 4.26
196 197 4.640771 AGAGGATTTAGGTTGTTGAGCA 57.359 40.909 0.00 0.00 0.00 4.26
197 198 4.985538 AGAGGATTTAGGTTGTTGAGCAA 58.014 39.130 0.00 0.00 34.16 3.91
198 199 5.385198 AGAGGATTTAGGTTGTTGAGCAAA 58.615 37.500 0.00 0.00 39.03 3.68
199 200 5.241728 AGAGGATTTAGGTTGTTGAGCAAAC 59.758 40.000 0.00 0.00 44.87 2.93
200 201 4.280929 AGGATTTAGGTTGTTGAGCAAACC 59.719 41.667 0.00 0.00 45.63 3.27
201 202 3.701532 TTTAGGTTGTTGAGCAAACCG 57.298 42.857 0.00 0.00 45.63 4.44
202 203 2.335316 TAGGTTGTTGAGCAAACCGT 57.665 45.000 0.00 0.00 45.63 4.83
203 204 1.021968 AGGTTGTTGAGCAAACCGTC 58.978 50.000 0.00 0.00 45.63 4.79
204 205 1.021968 GGTTGTTGAGCAAACCGTCT 58.978 50.000 0.41 0.00 38.82 4.18
205 206 1.002792 GGTTGTTGAGCAAACCGTCTC 60.003 52.381 0.41 0.00 38.82 3.36
206 207 1.002792 GTTGTTGAGCAAACCGTCTCC 60.003 52.381 0.41 0.00 39.03 3.71
207 208 0.179234 TGTTGAGCAAACCGTCTCCA 59.821 50.000 0.41 0.00 38.06 3.86
208 209 1.305201 GTTGAGCAAACCGTCTCCAA 58.695 50.000 0.00 0.00 32.13 3.53
209 210 1.673920 GTTGAGCAAACCGTCTCCAAA 59.326 47.619 0.00 0.00 32.13 3.28
210 211 2.045561 TGAGCAAACCGTCTCCAAAA 57.954 45.000 0.00 0.00 0.00 2.44
211 212 2.582052 TGAGCAAACCGTCTCCAAAAT 58.418 42.857 0.00 0.00 0.00 1.82
212 213 2.955660 TGAGCAAACCGTCTCCAAAATT 59.044 40.909 0.00 0.00 0.00 1.82
213 214 3.383185 TGAGCAAACCGTCTCCAAAATTT 59.617 39.130 0.00 0.00 0.00 1.82
214 215 4.580995 TGAGCAAACCGTCTCCAAAATTTA 59.419 37.500 0.00 0.00 0.00 1.40
215 216 5.242838 TGAGCAAACCGTCTCCAAAATTTAT 59.757 36.000 0.00 0.00 0.00 1.40
216 217 6.096673 AGCAAACCGTCTCCAAAATTTATT 57.903 33.333 0.00 0.00 0.00 1.40
217 218 7.040340 TGAGCAAACCGTCTCCAAAATTTATTA 60.040 33.333 0.00 0.00 0.00 0.98
218 219 7.088272 AGCAAACCGTCTCCAAAATTTATTAC 58.912 34.615 0.00 0.00 0.00 1.89
219 220 6.864165 GCAAACCGTCTCCAAAATTTATTACA 59.136 34.615 0.00 0.00 0.00 2.41
220 221 7.061789 GCAAACCGTCTCCAAAATTTATTACAG 59.938 37.037 0.00 0.00 0.00 2.74
221 222 7.989416 AACCGTCTCCAAAATTTATTACAGA 57.011 32.000 0.00 0.00 0.00 3.41
222 223 7.373778 ACCGTCTCCAAAATTTATTACAGAC 57.626 36.000 0.00 0.00 0.00 3.51
224 225 6.475207 CGTCTCCAAAATTTATTACAGACGG 58.525 40.000 19.89 9.44 45.17 4.79
225 226 6.091713 CGTCTCCAAAATTTATTACAGACGGT 59.908 38.462 19.89 0.00 45.17 4.83
226 227 7.360607 CGTCTCCAAAATTTATTACAGACGGTT 60.361 37.037 19.89 0.00 45.17 4.44
227 228 8.294577 GTCTCCAAAATTTATTACAGACGGTTT 58.705 33.333 0.00 0.00 0.00 3.27
228 229 8.508875 TCTCCAAAATTTATTACAGACGGTTTC 58.491 33.333 0.00 0.00 0.00 2.78
229 230 7.299586 TCCAAAATTTATTACAGACGGTTTCG 58.700 34.615 0.00 0.00 43.02 3.46
230 231 7.172875 TCCAAAATTTATTACAGACGGTTTCGA 59.827 33.333 0.00 0.00 40.11 3.71
231 232 7.269724 CCAAAATTTATTACAGACGGTTTCGAC 59.730 37.037 0.00 0.00 40.11 4.20
232 233 7.662604 AAATTTATTACAGACGGTTTCGACT 57.337 32.000 0.00 0.00 41.56 4.18
233 234 8.761575 AAATTTATTACAGACGGTTTCGACTA 57.238 30.769 0.00 0.00 39.14 2.59
234 235 8.937634 AATTTATTACAGACGGTTTCGACTAT 57.062 30.769 0.00 0.00 39.14 2.12
235 236 7.975866 TTTATTACAGACGGTTTCGACTATC 57.024 36.000 0.00 0.00 39.14 2.08
236 237 2.935481 ACAGACGGTTTCGACTATCC 57.065 50.000 0.00 0.00 39.14 2.59
237 238 2.165167 ACAGACGGTTTCGACTATCCA 58.835 47.619 0.00 0.00 39.14 3.41
238 239 2.559668 ACAGACGGTTTCGACTATCCAA 59.440 45.455 0.00 0.00 39.14 3.53
239 240 2.921754 CAGACGGTTTCGACTATCCAAC 59.078 50.000 0.00 0.00 39.14 3.77
240 241 2.094338 AGACGGTTTCGACTATCCAACC 60.094 50.000 4.64 4.64 39.36 3.77
241 242 1.619827 ACGGTTTCGACTATCCAACCA 59.380 47.619 13.37 0.00 38.97 3.67
242 243 1.997606 CGGTTTCGACTATCCAACCAC 59.002 52.381 13.37 0.00 38.97 4.16
243 244 2.353323 GGTTTCGACTATCCAACCACC 58.647 52.381 9.12 0.00 38.89 4.61
244 245 2.027469 GGTTTCGACTATCCAACCACCT 60.027 50.000 9.12 0.00 38.89 4.00
245 246 3.558533 GGTTTCGACTATCCAACCACCTT 60.559 47.826 9.12 0.00 38.89 3.50
246 247 3.328382 TTCGACTATCCAACCACCTTG 57.672 47.619 0.00 0.00 0.00 3.61
264 265 4.646572 CCTTGGAGGTGATTATTAGAGGC 58.353 47.826 0.00 0.00 0.00 4.70
265 266 4.103153 CCTTGGAGGTGATTATTAGAGGCA 59.897 45.833 0.00 0.00 0.00 4.75
266 267 4.963318 TGGAGGTGATTATTAGAGGCAG 57.037 45.455 0.00 0.00 0.00 4.85
267 268 3.071602 TGGAGGTGATTATTAGAGGCAGC 59.928 47.826 0.00 0.00 0.00 5.25
268 269 3.326297 GGAGGTGATTATTAGAGGCAGCT 59.674 47.826 0.00 0.00 39.69 4.24
269 270 4.202409 GGAGGTGATTATTAGAGGCAGCTT 60.202 45.833 0.00 0.00 37.43 3.74
270 271 5.372373 GAGGTGATTATTAGAGGCAGCTTT 58.628 41.667 0.00 0.00 37.43 3.51
271 272 5.128919 AGGTGATTATTAGAGGCAGCTTTG 58.871 41.667 0.00 0.00 34.02 2.77
272 273 4.884164 GGTGATTATTAGAGGCAGCTTTGT 59.116 41.667 0.00 0.00 0.00 2.83
273 274 5.008118 GGTGATTATTAGAGGCAGCTTTGTC 59.992 44.000 0.00 0.00 0.00 3.18
274 275 5.008118 GTGATTATTAGAGGCAGCTTTGTCC 59.992 44.000 0.00 0.00 0.00 4.02
275 276 4.844349 TTATTAGAGGCAGCTTTGTCCT 57.156 40.909 0.00 0.00 0.00 3.85
276 277 2.479566 TTAGAGGCAGCTTTGTCCTG 57.520 50.000 0.00 0.00 0.00 3.86
282 283 2.724520 CAGCTTTGTCCTGCTTGGT 58.275 52.632 0.00 0.00 37.44 3.67
283 284 0.595095 CAGCTTTGTCCTGCTTGGTC 59.405 55.000 0.00 0.00 37.44 4.02
284 285 0.183492 AGCTTTGTCCTGCTTGGTCA 59.817 50.000 0.00 0.00 35.86 4.02
285 286 0.312102 GCTTTGTCCTGCTTGGTCAC 59.688 55.000 0.00 0.00 33.76 3.67
286 287 1.679139 CTTTGTCCTGCTTGGTCACA 58.321 50.000 0.00 0.00 33.76 3.58
287 288 2.023673 CTTTGTCCTGCTTGGTCACAA 58.976 47.619 0.00 0.00 33.76 3.33
288 289 1.388547 TTGTCCTGCTTGGTCACAAC 58.611 50.000 0.00 0.00 33.76 3.32
289 290 0.813610 TGTCCTGCTTGGTCACAACG 60.814 55.000 0.00 0.00 37.07 4.10
290 291 1.227823 TCCTGCTTGGTCACAACGG 60.228 57.895 0.00 0.00 37.07 4.44
291 292 1.525995 CCTGCTTGGTCACAACGGT 60.526 57.895 0.00 0.00 32.14 4.83
292 293 1.101049 CCTGCTTGGTCACAACGGTT 61.101 55.000 0.00 0.00 32.14 4.44
293 294 0.738389 CTGCTTGGTCACAACGGTTT 59.262 50.000 0.00 0.00 32.14 3.27
294 295 0.736053 TGCTTGGTCACAACGGTTTC 59.264 50.000 0.00 0.00 32.14 2.78
295 296 0.030235 GCTTGGTCACAACGGTTTCC 59.970 55.000 0.00 0.00 32.14 3.13
306 307 2.047179 GGTTTCCGAGAGCCGCTT 60.047 61.111 0.00 0.00 36.84 4.68
307 308 2.101233 GGTTTCCGAGAGCCGCTTC 61.101 63.158 0.00 0.00 36.84 3.86
308 309 1.079750 GTTTCCGAGAGCCGCTTCT 60.080 57.895 0.00 0.00 36.84 2.85
309 310 0.172803 GTTTCCGAGAGCCGCTTCTA 59.827 55.000 0.00 0.00 36.84 2.10
310 311 0.892755 TTTCCGAGAGCCGCTTCTAA 59.107 50.000 0.00 0.00 36.84 2.10
311 312 1.112113 TTCCGAGAGCCGCTTCTAAT 58.888 50.000 0.00 0.00 36.84 1.73
312 313 0.385751 TCCGAGAGCCGCTTCTAATG 59.614 55.000 0.00 0.00 36.84 1.90
313 314 1.218230 CCGAGAGCCGCTTCTAATGC 61.218 60.000 0.00 0.00 36.84 3.56
314 315 1.218230 CGAGAGCCGCTTCTAATGCC 61.218 60.000 0.00 0.00 0.00 4.40
315 316 1.218230 GAGAGCCGCTTCTAATGCCG 61.218 60.000 0.00 0.00 0.00 5.69
316 317 2.886782 GAGCCGCTTCTAATGCCGC 61.887 63.158 0.00 0.00 35.51 6.53
317 318 2.897350 GCCGCTTCTAATGCCGCT 60.897 61.111 0.00 0.00 33.26 5.52
318 319 2.472909 GCCGCTTCTAATGCCGCTT 61.473 57.895 0.00 0.00 33.26 4.68
319 320 1.993369 GCCGCTTCTAATGCCGCTTT 61.993 55.000 0.00 0.00 33.26 3.51
320 321 0.451783 CCGCTTCTAATGCCGCTTTT 59.548 50.000 0.00 0.00 0.00 2.27
321 322 1.135402 CCGCTTCTAATGCCGCTTTTT 60.135 47.619 0.00 0.00 0.00 1.94
343 344 6.795098 TTTTACTAGTGCATGTTGGTGTAG 57.205 37.500 5.39 0.00 0.00 2.74
344 345 5.731957 TTACTAGTGCATGTTGGTGTAGA 57.268 39.130 5.39 0.00 0.00 2.59
345 346 4.193826 ACTAGTGCATGTTGGTGTAGAG 57.806 45.455 0.00 0.00 0.00 2.43
346 347 3.832490 ACTAGTGCATGTTGGTGTAGAGA 59.168 43.478 0.00 0.00 0.00 3.10
347 348 3.988976 AGTGCATGTTGGTGTAGAGAT 57.011 42.857 0.00 0.00 0.00 2.75
348 349 3.866651 AGTGCATGTTGGTGTAGAGATC 58.133 45.455 0.00 0.00 0.00 2.75
349 350 2.604914 GTGCATGTTGGTGTAGAGATCG 59.395 50.000 0.00 0.00 0.00 3.69
350 351 2.205074 GCATGTTGGTGTAGAGATCGG 58.795 52.381 0.00 0.00 0.00 4.18
351 352 2.159099 GCATGTTGGTGTAGAGATCGGA 60.159 50.000 0.00 0.00 0.00 4.55
352 353 3.493350 GCATGTTGGTGTAGAGATCGGAT 60.493 47.826 0.00 0.00 0.00 4.18
353 354 3.801114 TGTTGGTGTAGAGATCGGATG 57.199 47.619 0.00 0.00 0.00 3.51
354 355 2.430694 TGTTGGTGTAGAGATCGGATGG 59.569 50.000 0.00 0.00 0.00 3.51
355 356 2.693591 GTTGGTGTAGAGATCGGATGGA 59.306 50.000 0.00 0.00 0.00 3.41
356 357 3.244887 TGGTGTAGAGATCGGATGGAT 57.755 47.619 0.00 0.00 38.35 3.41
413 416 7.475137 AAAACTGCTATGAGAGAAGTAGACT 57.525 36.000 0.00 0.00 44.20 3.24
439 442 2.543641 CCCCCTCACGTTAATTCGTAC 58.456 52.381 0.00 0.00 42.27 3.67
475 478 9.490379 ACGACAACAAACTATTTTAAGATCTCT 57.510 29.630 0.00 0.00 0.00 3.10
489 493 9.520204 TTTTAAGATCTCTTTGCAAAGAACAAG 57.480 29.630 34.71 25.24 43.84 3.16
492 496 7.807977 AGATCTCTTTGCAAAGAACAAGTAA 57.192 32.000 34.71 18.17 43.84 2.24
559 565 7.393796 TGCATTTTAAATTTTACTCCCTCCGTA 59.606 33.333 0.00 0.00 0.00 4.02
646 660 5.593968 ACACATTAGAACGTGTCTACACAA 58.406 37.500 13.30 0.42 42.61 3.33
651 665 7.868922 ACATTAGAACGTGTCTACACAAATACA 59.131 33.333 13.30 0.00 46.75 2.29
660 674 8.212495 CGTGTCTACACAAATACAGTTTAGAAC 58.788 37.037 13.30 0.00 46.75 3.01
662 676 9.037737 TGTCTACACAAATACAGTTTAGAACAC 57.962 33.333 0.00 0.00 32.07 3.32
663 677 8.212495 GTCTACACAAATACAGTTTAGAACACG 58.788 37.037 0.00 0.00 32.07 4.49
664 678 8.136800 TCTACACAAATACAGTTTAGAACACGA 58.863 33.333 0.00 0.00 28.42 4.35
666 680 7.627340 ACACAAATACAGTTTAGAACACGAAG 58.373 34.615 0.00 0.00 0.00 3.79
668 682 8.757789 CACAAATACAGTTTAGAACACGAAGTA 58.242 33.333 0.00 0.00 41.61 2.24
669 683 9.485206 ACAAATACAGTTTAGAACACGAAGTAT 57.515 29.630 0.00 0.00 41.61 2.12
684 698 8.928270 ACACGAAGTATTAGAACATCCTTTAG 57.072 34.615 0.00 0.00 41.61 1.85
718 732 9.498176 TGAAGGGAGTAGAAAATAAGTTTACAC 57.502 33.333 0.00 0.00 0.00 2.90
720 734 9.503399 AAGGGAGTAGAAAATAAGTTTACACAG 57.497 33.333 0.00 0.00 0.00 3.66
779 793 0.438445 CATTGTGTGTACGCCGTGAG 59.562 55.000 0.00 0.00 0.00 3.51
798 812 2.733218 TGAGAAGCGCGTTCACCG 60.733 61.111 18.86 0.00 37.67 4.94
809 823 1.060698 GCGTTCACCGTTTAGCATCTC 59.939 52.381 0.00 0.00 39.32 2.75
836 856 5.048434 CACAAAAAGATCCTCCTCCTTTCAC 60.048 44.000 0.00 0.00 30.62 3.18
874 894 4.699522 GGACCGTGACAGGTGGGC 62.700 72.222 3.96 0.00 46.09 5.36
931 951 2.096248 TCTTCTCCGCCTCTTCTTCTC 58.904 52.381 0.00 0.00 0.00 2.87
1199 1219 6.739112 AGAAGCAGGTCAATAAACTTGAAAC 58.261 36.000 0.00 0.00 0.00 2.78
1202 1222 4.681483 GCAGGTCAATAAACTTGAAACTGC 59.319 41.667 20.33 20.33 45.43 4.40
1211 1231 1.635663 CTTGAAACTGCCCCGCGTAG 61.636 60.000 4.92 0.00 0.00 3.51
1268 1288 1.135699 GCGTCGCAATTGCAATCCTG 61.136 55.000 28.77 9.58 42.21 3.86
1280 1300 1.745141 GCAATCCTGTGGAGTAGGCAG 60.745 57.143 0.00 0.00 34.05 4.85
1282 1302 4.136978 CCTGTGGAGTAGGCAGGT 57.863 61.111 0.00 0.00 43.42 4.00
1313 1334 2.417719 GGGGTCTATCAATAGCTTGCG 58.582 52.381 0.00 0.00 32.11 4.85
1320 1341 2.779755 TCAATAGCTTGCGGGAAAGA 57.220 45.000 0.00 0.00 32.11 2.52
1321 1342 3.066291 TCAATAGCTTGCGGGAAAGAA 57.934 42.857 0.00 0.00 32.11 2.52
1322 1343 3.417101 TCAATAGCTTGCGGGAAAGAAA 58.583 40.909 0.00 0.00 32.11 2.52
1323 1344 3.440173 TCAATAGCTTGCGGGAAAGAAAG 59.560 43.478 0.00 0.00 32.11 2.62
1324 1345 2.561478 TAGCTTGCGGGAAAGAAAGT 57.439 45.000 0.00 0.00 0.00 2.66
1365 1386 7.597743 CAGAAAATTTCTTGGAACCAGATTCTG 59.402 37.037 5.36 6.70 38.11 3.02
1369 1390 2.632996 TCTTGGAACCAGATTCTGTCGT 59.367 45.455 12.54 1.67 37.48 4.34
1379 1400 5.124776 ACCAGATTCTGTCGTCTTTCTCTAG 59.875 44.000 12.54 0.00 0.00 2.43
1394 1415 7.439655 GTCTTTCTCTAGTTGTTGTGACTGAAT 59.560 37.037 0.00 0.00 0.00 2.57
1426 1447 4.654915 TGATTGGAGAAGCAATCTGTTCA 58.345 39.130 0.00 0.00 38.96 3.18
1578 1600 2.047274 TGTTGCTACGAGCCAGGC 60.047 61.111 1.84 1.84 41.51 4.85
1926 1948 5.560966 ACACTGATCTTCAACGTTTTTGT 57.439 34.783 0.00 0.00 0.00 2.83
1962 2000 7.334421 ACTCATATTTATGTTCAGTGTGTGACC 59.666 37.037 0.00 0.00 35.26 4.02
1974 2012 2.353579 GTGTGTGACCTGTGTTACCAAC 59.646 50.000 0.00 0.00 30.27 3.77
1988 2026 5.590259 GTGTTACCAACATCATAGCCTTGAT 59.410 40.000 0.00 0.00 44.35 2.57
1999 2037 7.071698 ACATCATAGCCTTGATATATGGTAGGG 59.928 40.741 0.00 0.00 34.59 3.53
2018 2056 7.623677 TGGTAGGGTAGATAAGCATGCTTATAT 59.376 37.037 39.69 37.98 45.88 0.86
2116 2156 7.502226 TCCTACTTTGCCTATTTAATGTGGATG 59.498 37.037 3.66 0.00 0.00 3.51
2585 2628 2.644078 CACAAGCAGAAAGAAAGACGC 58.356 47.619 0.00 0.00 0.00 5.19
2906 2961 7.651808 ACAAGTAAACTCATCCTTCAAACATG 58.348 34.615 0.00 0.00 0.00 3.21
2973 3029 7.290014 TCAAACATGAGAACTGCCTCCTATATA 59.710 37.037 0.00 0.00 32.32 0.86
3203 3259 5.067153 CGGATACTAATGGCAACCAATTTGA 59.933 40.000 0.00 0.00 36.95 2.69
3271 3327 6.654582 GGCAGGTTTGTTTGAATTTTCCATAT 59.345 34.615 0.00 0.00 0.00 1.78
3436 3502 3.884895 TGTGCTTCTTGACTTCCTTTCA 58.115 40.909 0.00 0.00 0.00 2.69
3437 3503 4.464008 TGTGCTTCTTGACTTCCTTTCAT 58.536 39.130 0.00 0.00 0.00 2.57
3438 3504 4.516698 TGTGCTTCTTGACTTCCTTTCATC 59.483 41.667 0.00 0.00 0.00 2.92
3583 3650 0.512518 TTTGCAGTCGTCTTGATGCG 59.487 50.000 0.00 0.00 41.58 4.73
3597 3664 3.866883 TGATGCGTAATCAGTGACTCA 57.133 42.857 0.00 0.00 40.50 3.41
3600 3667 3.494045 TGCGTAATCAGTGACTCAGAG 57.506 47.619 0.00 0.00 0.00 3.35
3643 3710 3.058293 CAGATGTGTTAAGGCGCTCAAAA 60.058 43.478 7.64 0.00 0.00 2.44
3672 3739 2.820197 GGAGGACATCAAGGTGGAAAAC 59.180 50.000 0.00 0.00 0.00 2.43
3720 3787 5.844004 TGTCTCTCAGGTTAGTTCTTGTTC 58.156 41.667 0.00 0.00 0.00 3.18
3789 3856 5.003804 AGACATCCAATTGGTAGTGAACAC 58.996 41.667 23.76 10.81 36.34 3.32
3905 4178 4.790765 ATACTTTCCTTTGCCTCTTTGC 57.209 40.909 0.00 0.00 0.00 3.68
4208 4491 1.002544 GAGTCTTCAGTTGGGGACAGG 59.997 57.143 0.00 0.00 44.54 4.00
4306 4589 6.922247 TCACCGTGTTACTTATTTGTGAAA 57.078 33.333 0.00 0.00 0.00 2.69
4606 4889 1.905687 CAACTAGAAGCGACGACGAAG 59.094 52.381 12.29 2.38 42.66 3.79
4684 4967 4.606071 CCAGCTCTGGTTCTTCCG 57.394 61.111 7.75 0.00 45.53 4.30
4804 5087 3.682696 TCTCTTCAGTTAGTAGCGGTGA 58.317 45.455 0.00 0.00 0.00 4.02
5308 5595 7.175641 ACAAAAGGAGACTCCATATGTGAAAAG 59.824 37.037 23.60 3.31 42.68 2.27
5325 5612 5.743872 GTGAAAAGTTGCAGTGGAAACTAAG 59.256 40.000 0.00 0.00 42.31 2.18
5343 5630 5.631026 ACTAAGCATTTGTTTACGATGCAG 58.369 37.500 17.53 11.92 46.48 4.41
5344 5631 3.492421 AGCATTTGTTTACGATGCAGG 57.508 42.857 17.53 0.00 46.48 4.85
5345 5632 2.164219 AGCATTTGTTTACGATGCAGGG 59.836 45.455 17.53 0.00 46.48 4.45
5346 5633 2.163412 GCATTTGTTTACGATGCAGGGA 59.837 45.455 13.02 0.00 44.18 4.20
5348 5635 4.036262 GCATTTGTTTACGATGCAGGGATA 59.964 41.667 13.02 0.00 44.18 2.59
5349 5636 5.751680 CATTTGTTTACGATGCAGGGATAG 58.248 41.667 0.00 0.00 0.00 2.08
5350 5637 4.481368 TTGTTTACGATGCAGGGATAGT 57.519 40.909 0.00 0.00 0.00 2.12
5351 5638 4.481368 TGTTTACGATGCAGGGATAGTT 57.519 40.909 0.00 0.00 0.00 2.24
5352 5639 5.601583 TGTTTACGATGCAGGGATAGTTA 57.398 39.130 0.00 0.00 0.00 2.24
5353 5640 5.597806 TGTTTACGATGCAGGGATAGTTAG 58.402 41.667 0.00 0.00 0.00 2.34
5355 5642 5.864418 TTACGATGCAGGGATAGTTAGTT 57.136 39.130 0.00 0.00 0.00 2.24
5356 5643 6.964807 TTACGATGCAGGGATAGTTAGTTA 57.035 37.500 0.00 0.00 0.00 2.24
5357 5644 5.864418 ACGATGCAGGGATAGTTAGTTAA 57.136 39.130 0.00 0.00 0.00 2.01
5358 5645 6.229936 ACGATGCAGGGATAGTTAGTTAAA 57.770 37.500 0.00 0.00 0.00 1.52
5359 5646 6.047231 ACGATGCAGGGATAGTTAGTTAAAC 58.953 40.000 0.00 0.00 38.46 2.01
5372 5659 1.862827 AGTTAAACTGAACACCGACGC 59.137 47.619 0.00 0.00 0.00 5.19
5373 5660 1.070376 GTTAAACTGAACACCGACGCC 60.070 52.381 0.00 0.00 0.00 5.68
5374 5661 0.390124 TAAACTGAACACCGACGCCT 59.610 50.000 0.00 0.00 0.00 5.52
5375 5662 0.878961 AAACTGAACACCGACGCCTC 60.879 55.000 0.00 0.00 0.00 4.70
5376 5663 1.745320 AACTGAACACCGACGCCTCT 61.745 55.000 0.00 0.00 0.00 3.69
5378 5665 0.600255 CTGAACACCGACGCCTCTTT 60.600 55.000 0.00 0.00 0.00 2.52
5379 5666 0.599204 TGAACACCGACGCCTCTTTC 60.599 55.000 0.00 0.00 0.00 2.62
5380 5667 0.599204 GAACACCGACGCCTCTTTCA 60.599 55.000 0.00 0.00 0.00 2.69
5382 5669 0.389948 ACACCGACGCCTCTTTCATC 60.390 55.000 0.00 0.00 0.00 2.92
5383 5670 0.389817 CACCGACGCCTCTTTCATCA 60.390 55.000 0.00 0.00 0.00 3.07
5384 5671 0.389948 ACCGACGCCTCTTTCATCAC 60.390 55.000 0.00 0.00 0.00 3.06
5385 5672 0.108615 CCGACGCCTCTTTCATCACT 60.109 55.000 0.00 0.00 0.00 3.41
5388 5675 2.736719 CGACGCCTCTTTCATCACTGAT 60.737 50.000 0.00 0.00 0.00 2.90
5389 5676 3.265791 GACGCCTCTTTCATCACTGATT 58.734 45.455 0.00 0.00 0.00 2.57
5390 5677 3.265791 ACGCCTCTTTCATCACTGATTC 58.734 45.455 0.00 0.00 0.00 2.52
5391 5678 3.055530 ACGCCTCTTTCATCACTGATTCT 60.056 43.478 0.00 0.00 0.00 2.40
5392 5679 3.309138 CGCCTCTTTCATCACTGATTCTG 59.691 47.826 0.00 0.00 0.00 3.02
5393 5680 3.626670 GCCTCTTTCATCACTGATTCTGG 59.373 47.826 0.00 0.00 0.00 3.86
5395 5682 4.874966 CCTCTTTCATCACTGATTCTGGTC 59.125 45.833 0.00 0.00 0.00 4.02
5396 5683 5.485620 CTCTTTCATCACTGATTCTGGTCA 58.514 41.667 0.00 0.00 0.00 4.02
5397 5684 5.868454 TCTTTCATCACTGATTCTGGTCAA 58.132 37.500 0.00 0.00 0.00 3.18
5398 5685 5.936372 TCTTTCATCACTGATTCTGGTCAAG 59.064 40.000 0.00 0.00 0.00 3.02
5399 5686 4.212143 TCATCACTGATTCTGGTCAAGG 57.788 45.455 0.00 0.00 0.00 3.61
5400 5687 3.584406 TCATCACTGATTCTGGTCAAGGT 59.416 43.478 0.00 0.00 0.00 3.50
5401 5688 4.042062 TCATCACTGATTCTGGTCAAGGTT 59.958 41.667 0.00 0.00 0.00 3.50
5402 5689 4.437682 TCACTGATTCTGGTCAAGGTTT 57.562 40.909 0.00 0.00 0.00 3.27
5403 5690 4.389374 TCACTGATTCTGGTCAAGGTTTC 58.611 43.478 0.00 0.00 0.00 2.78
5406 5693 2.370519 TGATTCTGGTCAAGGTTTCGGA 59.629 45.455 0.00 0.00 0.00 4.55
5407 5694 3.181449 TGATTCTGGTCAAGGTTTCGGAA 60.181 43.478 0.00 0.00 0.00 4.30
5411 5698 2.228822 CTGGTCAAGGTTTCGGAAATGG 59.771 50.000 6.43 0.00 0.00 3.16
5412 5699 2.158593 TGGTCAAGGTTTCGGAAATGGA 60.159 45.455 6.43 0.13 0.00 3.41
5413 5700 3.089284 GGTCAAGGTTTCGGAAATGGAT 58.911 45.455 6.43 0.00 0.00 3.41
5415 5702 4.485163 GTCAAGGTTTCGGAAATGGATTG 58.515 43.478 6.43 9.27 0.00 2.67
5417 5704 2.807676 AGGTTTCGGAAATGGATTGCT 58.192 42.857 6.43 0.00 0.00 3.91
5418 5705 2.755103 AGGTTTCGGAAATGGATTGCTC 59.245 45.455 6.43 0.00 0.00 4.26
5419 5706 2.491693 GGTTTCGGAAATGGATTGCTCA 59.508 45.455 6.43 0.00 0.00 4.26
5420 5707 3.056891 GGTTTCGGAAATGGATTGCTCAA 60.057 43.478 6.43 0.00 0.00 3.02
5421 5708 4.381932 GGTTTCGGAAATGGATTGCTCAAT 60.382 41.667 6.43 0.00 0.00 2.57
5422 5709 4.374843 TTCGGAAATGGATTGCTCAATG 57.625 40.909 0.00 0.00 0.00 2.82
5423 5710 2.099592 TCGGAAATGGATTGCTCAATGC 59.900 45.455 7.09 7.09 39.25 3.56
5424 5711 2.100252 CGGAAATGGATTGCTCAATGCT 59.900 45.455 13.76 0.00 43.37 3.79
5425 5712 3.429822 CGGAAATGGATTGCTCAATGCTT 60.430 43.478 13.76 6.25 43.37 3.91
5426 5713 3.869246 GGAAATGGATTGCTCAATGCTTG 59.131 43.478 13.76 0.00 43.37 4.01
5427 5714 2.596904 ATGGATTGCTCAATGCTTGC 57.403 45.000 13.76 0.00 43.37 4.01
5428 5715 1.258676 TGGATTGCTCAATGCTTGCA 58.741 45.000 13.76 0.00 43.37 4.08
5432 5719 2.894763 TTGCTCAATGCTTGCAAACT 57.105 40.000 0.00 0.00 42.65 2.66
5434 5721 3.564235 TGCTCAATGCTTGCAAACTAG 57.436 42.857 0.00 0.00 43.37 2.57
5435 5722 2.257034 GCTCAATGCTTGCAAACTAGC 58.743 47.619 0.00 0.00 43.86 3.42
5436 5723 2.094854 GCTCAATGCTTGCAAACTAGCT 60.095 45.455 9.40 0.00 43.92 3.32
5437 5724 3.499048 CTCAATGCTTGCAAACTAGCTG 58.501 45.455 9.40 1.08 43.92 4.24
5438 5725 3.148412 TCAATGCTTGCAAACTAGCTGA 58.852 40.909 9.40 3.32 43.92 4.26
5440 5727 3.565905 ATGCTTGCAAACTAGCTGAAC 57.434 42.857 9.40 0.00 43.92 3.18
5441 5728 2.575532 TGCTTGCAAACTAGCTGAACT 58.424 42.857 9.40 0.00 43.92 3.01
5442 5729 2.951642 TGCTTGCAAACTAGCTGAACTT 59.048 40.909 9.40 0.00 43.92 2.66
5444 5731 3.732721 GCTTGCAAACTAGCTGAACTTTG 59.267 43.478 0.00 0.00 40.89 2.77
5445 5732 4.734695 GCTTGCAAACTAGCTGAACTTTGT 60.735 41.667 0.00 0.00 40.89 2.83
5446 5733 4.291540 TGCAAACTAGCTGAACTTTGTG 57.708 40.909 0.00 0.00 34.99 3.33
5447 5734 3.944650 TGCAAACTAGCTGAACTTTGTGA 59.055 39.130 0.00 0.00 34.99 3.58
5449 5736 4.735338 GCAAACTAGCTGAACTTTGTGAAC 59.265 41.667 0.00 0.00 0.00 3.18
5450 5737 5.273944 CAAACTAGCTGAACTTTGTGAACC 58.726 41.667 0.00 0.00 0.00 3.62
5451 5738 4.423625 ACTAGCTGAACTTTGTGAACCT 57.576 40.909 0.00 0.00 0.00 3.50
5452 5739 4.781934 ACTAGCTGAACTTTGTGAACCTT 58.218 39.130 0.00 0.00 0.00 3.50
5453 5740 4.576463 ACTAGCTGAACTTTGTGAACCTTG 59.424 41.667 0.00 0.00 0.00 3.61
5455 5742 3.129287 AGCTGAACTTTGTGAACCTTGTG 59.871 43.478 0.00 0.00 0.00 3.33
5456 5743 3.128589 GCTGAACTTTGTGAACCTTGTGA 59.871 43.478 0.00 0.00 0.00 3.58
5458 5745 3.128589 TGAACTTTGTGAACCTTGTGAGC 59.871 43.478 0.00 0.00 0.00 4.26
5459 5746 3.004752 ACTTTGTGAACCTTGTGAGCT 57.995 42.857 0.00 0.00 0.00 4.09
5460 5747 2.945668 ACTTTGTGAACCTTGTGAGCTC 59.054 45.455 6.82 6.82 0.00 4.09
5461 5748 2.708216 TTGTGAACCTTGTGAGCTCA 57.292 45.000 13.74 13.74 0.00 4.26
5463 5750 2.497138 TGTGAACCTTGTGAGCTCATG 58.503 47.619 21.47 12.93 0.00 3.07
5464 5751 1.198637 GTGAACCTTGTGAGCTCATGC 59.801 52.381 21.47 8.66 40.05 4.06
5465 5752 1.202794 TGAACCTTGTGAGCTCATGCA 60.203 47.619 21.47 11.54 42.74 3.96
5467 5754 2.211250 ACCTTGTGAGCTCATGCATT 57.789 45.000 21.47 1.78 42.74 3.56
5468 5755 2.089980 ACCTTGTGAGCTCATGCATTC 58.910 47.619 21.47 6.23 42.74 2.67
5469 5756 2.290768 ACCTTGTGAGCTCATGCATTCT 60.291 45.455 21.47 0.00 42.74 2.40
5470 5757 2.097629 CCTTGTGAGCTCATGCATTCTG 59.902 50.000 21.47 4.79 42.74 3.02
5472 5759 3.062122 TGTGAGCTCATGCATTCTGAA 57.938 42.857 21.47 0.00 42.74 3.02
5473 5760 3.617284 TGTGAGCTCATGCATTCTGAAT 58.383 40.909 21.47 0.00 42.74 2.57
5474 5761 3.377172 TGTGAGCTCATGCATTCTGAATG 59.623 43.478 21.47 22.83 42.74 2.67
5475 5762 3.377485 GTGAGCTCATGCATTCTGAATGT 59.623 43.478 26.22 9.46 42.74 2.71
5476 5763 4.573607 GTGAGCTCATGCATTCTGAATGTA 59.426 41.667 26.22 23.56 42.74 2.29
5477 5764 5.065602 GTGAGCTCATGCATTCTGAATGTAA 59.934 40.000 26.22 17.58 42.74 2.41
5502 5789 9.672673 AATGCACATATTGACTAGTTTTCTACT 57.327 29.630 0.00 0.00 41.04 2.57
5503 5790 8.703604 TGCACATATTGACTAGTTTTCTACTC 57.296 34.615 0.00 0.00 38.33 2.59
5504 5791 7.488150 TGCACATATTGACTAGTTTTCTACTCG 59.512 37.037 0.00 0.00 38.33 4.18
5505 5792 7.488471 GCACATATTGACTAGTTTTCTACTCGT 59.512 37.037 0.00 0.00 38.33 4.18
5512 5799 8.571461 TGACTAGTTTTCTACTCGTTTTTCTC 57.429 34.615 0.00 0.00 38.33 2.87
5515 5802 9.374838 ACTAGTTTTCTACTCGTTTTTCTCAAA 57.625 29.630 0.00 0.00 38.33 2.69
5518 5805 9.556030 AGTTTTCTACTCGTTTTTCTCAAAAAG 57.444 29.630 0.00 0.00 35.07 2.27
5519 5806 9.338291 GTTTTCTACTCGTTTTTCTCAAAAAGT 57.662 29.630 0.00 0.00 40.71 2.66
5526 5813 9.849166 ACTCGTTTTTCTCAAAAAGTAAATTCA 57.151 25.926 0.00 0.00 40.71 2.57
5538 5825 9.801714 CAAAAAGTAAATTCATCATCAAGTTGC 57.198 29.630 0.00 0.00 0.00 4.17
5539 5826 9.545105 AAAAAGTAAATTCATCATCAAGTTGCA 57.455 25.926 0.00 0.00 0.00 4.08
5544 5898 9.188588 GTAAATTCATCATCAAGTTGCATATGG 57.811 33.333 4.56 0.00 0.00 2.74
5582 5936 1.964223 TCCAGACACACCTTCTCTGTC 59.036 52.381 0.00 0.00 35.51 3.51
5625 5979 3.709653 TGGGGAAGATCAGTACATACCAC 59.290 47.826 0.00 0.00 0.00 4.16
5644 5998 4.943705 ACCACACCAACAGTTCATATCATC 59.056 41.667 0.00 0.00 0.00 2.92
5647 6001 5.065602 CACACCAACAGTTCATATCATCTGG 59.934 44.000 0.00 0.00 32.92 3.86
5658 6012 4.939439 TCATATCATCTGGCATGCATGTAC 59.061 41.667 26.79 19.92 0.00 2.90
5680 6034 3.336509 TCCTAGCTAGCCTCAAATCCT 57.663 47.619 15.74 0.00 0.00 3.24
5683 6037 4.106502 TCCTAGCTAGCCTCAAATCCTAGA 59.893 45.833 15.74 0.00 32.27 2.43
5687 6041 3.055458 GCTAGCCTCAAATCCTAGATCCC 60.055 52.174 2.29 0.00 32.27 3.85
5736 6090 1.076024 TGCTTCTTTTGGAGCCTGGAT 59.924 47.619 0.00 0.00 0.00 3.41
5753 6107 1.527696 GATTTGCGTTCATGCGACAG 58.472 50.000 0.00 0.00 37.81 3.51
5770 6124 1.077787 AGCATTCGGGCGAAATGGA 60.078 52.632 11.07 0.00 37.69 3.41
5801 6155 1.228124 CGTTGGTGCCCCTCTTCAA 60.228 57.895 0.00 0.00 0.00 2.69
5838 6192 1.502640 GGTCTCGACGTCCACTCTG 59.497 63.158 10.58 0.00 0.00 3.35
5885 6239 1.282248 CCGACGTCGACAAGCATGTT 61.282 55.000 37.65 0.00 40.74 2.71
5895 6249 3.496130 CGACAAGCATGTTCAAGTTCTCT 59.504 43.478 0.00 0.00 40.74 3.10
5943 6297 1.414158 TCCCCTTGAGATCGTCATCC 58.586 55.000 0.00 0.00 34.17 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.041576 GCTTTTTCGTCGGTGACCAC 60.042 55.000 1.11 0.00 0.00 4.16
9 10 1.492319 CGCTTTTTCGTCGGTGACCA 61.492 55.000 1.11 0.00 0.00 4.02
10 11 1.203313 CGCTTTTTCGTCGGTGACC 59.797 57.895 0.00 0.00 0.00 4.02
11 12 1.438222 GCGCTTTTTCGTCGGTGAC 60.438 57.895 0.00 0.00 0.00 3.67
12 13 1.883544 TGCGCTTTTTCGTCGGTGA 60.884 52.632 9.73 0.00 0.00 4.02
13 14 1.721133 GTGCGCTTTTTCGTCGGTG 60.721 57.895 9.73 0.00 0.00 4.94
14 15 1.707239 TTGTGCGCTTTTTCGTCGGT 61.707 50.000 9.73 0.00 0.00 4.69
15 16 0.991770 CTTGTGCGCTTTTTCGTCGG 60.992 55.000 9.73 0.00 0.00 4.79
16 17 0.042535 TCTTGTGCGCTTTTTCGTCG 60.043 50.000 9.73 0.00 0.00 5.12
17 18 1.003866 ACTCTTGTGCGCTTTTTCGTC 60.004 47.619 9.73 0.00 0.00 4.20
18 19 1.003866 GACTCTTGTGCGCTTTTTCGT 60.004 47.619 9.73 0.00 0.00 3.85
19 20 1.003972 TGACTCTTGTGCGCTTTTTCG 60.004 47.619 9.73 0.00 0.00 3.46
20 21 2.644078 CTGACTCTTGTGCGCTTTTTC 58.356 47.619 9.73 0.00 0.00 2.29
21 22 1.268743 GCTGACTCTTGTGCGCTTTTT 60.269 47.619 9.73 0.00 0.00 1.94
22 23 0.308993 GCTGACTCTTGTGCGCTTTT 59.691 50.000 9.73 0.00 0.00 2.27
23 24 1.835483 CGCTGACTCTTGTGCGCTTT 61.835 55.000 9.73 0.00 41.85 3.51
24 25 2.313172 CGCTGACTCTTGTGCGCTT 61.313 57.895 9.73 0.00 41.85 4.68
25 26 2.736236 CGCTGACTCTTGTGCGCT 60.736 61.111 9.73 0.00 41.85 5.92
26 27 3.782244 CCGCTGACTCTTGTGCGC 61.782 66.667 0.00 0.00 45.97 6.09
27 28 1.498865 AAACCGCTGACTCTTGTGCG 61.499 55.000 0.00 0.00 46.74 5.34
28 29 0.040958 CAAACCGCTGACTCTTGTGC 60.041 55.000 0.00 0.00 0.00 4.57
29 30 0.588252 CCAAACCGCTGACTCTTGTG 59.412 55.000 0.00 0.00 0.00 3.33
30 31 1.166531 GCCAAACCGCTGACTCTTGT 61.167 55.000 0.00 0.00 0.00 3.16
31 32 0.886490 AGCCAAACCGCTGACTCTTG 60.886 55.000 0.00 0.00 37.82 3.02
32 33 0.685097 TAGCCAAACCGCTGACTCTT 59.315 50.000 0.00 0.00 40.08 2.85
33 34 0.905357 ATAGCCAAACCGCTGACTCT 59.095 50.000 0.00 0.00 40.08 3.24
34 35 1.009829 CATAGCCAAACCGCTGACTC 58.990 55.000 0.00 0.00 40.08 3.36
35 36 0.392998 CCATAGCCAAACCGCTGACT 60.393 55.000 0.00 0.00 40.08 3.41
36 37 0.676782 ACCATAGCCAAACCGCTGAC 60.677 55.000 0.00 0.00 40.08 3.51
37 38 0.037590 AACCATAGCCAAACCGCTGA 59.962 50.000 0.00 0.00 40.08 4.26
38 39 0.887933 AAACCATAGCCAAACCGCTG 59.112 50.000 0.00 0.00 40.08 5.18
39 40 0.887933 CAAACCATAGCCAAACCGCT 59.112 50.000 0.00 0.00 43.09 5.52
40 41 0.108851 CCAAACCATAGCCAAACCGC 60.109 55.000 0.00 0.00 0.00 5.68
41 42 1.253100 ACCAAACCATAGCCAAACCG 58.747 50.000 0.00 0.00 0.00 4.44
42 43 2.367241 ACAACCAAACCATAGCCAAACC 59.633 45.455 0.00 0.00 0.00 3.27
43 44 3.389221 CACAACCAAACCATAGCCAAAC 58.611 45.455 0.00 0.00 0.00 2.93
44 45 2.366916 CCACAACCAAACCATAGCCAAA 59.633 45.455 0.00 0.00 0.00 3.28
45 46 1.967066 CCACAACCAAACCATAGCCAA 59.033 47.619 0.00 0.00 0.00 4.52
46 47 1.145945 TCCACAACCAAACCATAGCCA 59.854 47.619 0.00 0.00 0.00 4.75
47 48 1.917872 TCCACAACCAAACCATAGCC 58.082 50.000 0.00 0.00 0.00 3.93
48 49 4.097892 CCTATTCCACAACCAAACCATAGC 59.902 45.833 0.00 0.00 0.00 2.97
49 50 4.644685 CCCTATTCCACAACCAAACCATAG 59.355 45.833 0.00 0.00 0.00 2.23
50 51 4.292571 TCCCTATTCCACAACCAAACCATA 59.707 41.667 0.00 0.00 0.00 2.74
51 52 3.076785 TCCCTATTCCACAACCAAACCAT 59.923 43.478 0.00 0.00 0.00 3.55
52 53 2.447429 TCCCTATTCCACAACCAAACCA 59.553 45.455 0.00 0.00 0.00 3.67
53 54 3.163616 TCCCTATTCCACAACCAAACC 57.836 47.619 0.00 0.00 0.00 3.27
54 55 3.509967 CCTTCCCTATTCCACAACCAAAC 59.490 47.826 0.00 0.00 0.00 2.93
55 56 3.141272 ACCTTCCCTATTCCACAACCAAA 59.859 43.478 0.00 0.00 0.00 3.28
56 57 2.719705 ACCTTCCCTATTCCACAACCAA 59.280 45.455 0.00 0.00 0.00 3.67
57 58 2.041081 CACCTTCCCTATTCCACAACCA 59.959 50.000 0.00 0.00 0.00 3.67
58 59 2.307686 TCACCTTCCCTATTCCACAACC 59.692 50.000 0.00 0.00 0.00 3.77
59 60 3.713826 TCACCTTCCCTATTCCACAAC 57.286 47.619 0.00 0.00 0.00 3.32
60 61 3.010138 CCTTCACCTTCCCTATTCCACAA 59.990 47.826 0.00 0.00 0.00 3.33
61 62 2.576191 CCTTCACCTTCCCTATTCCACA 59.424 50.000 0.00 0.00 0.00 4.17
62 63 2.092375 CCCTTCACCTTCCCTATTCCAC 60.092 54.545 0.00 0.00 0.00 4.02
63 64 2.205342 CCCTTCACCTTCCCTATTCCA 58.795 52.381 0.00 0.00 0.00 3.53
64 65 2.488836 TCCCTTCACCTTCCCTATTCC 58.511 52.381 0.00 0.00 0.00 3.01
65 66 4.586306 TTTCCCTTCACCTTCCCTATTC 57.414 45.455 0.00 0.00 0.00 1.75
66 67 5.348259 TTTTTCCCTTCACCTTCCCTATT 57.652 39.130 0.00 0.00 0.00 1.73
85 86 8.989653 TTTTCCTTCAGTTTATGTTCGTTTTT 57.010 26.923 0.00 0.00 0.00 1.94
86 87 8.463607 TCTTTTCCTTCAGTTTATGTTCGTTTT 58.536 29.630 0.00 0.00 0.00 2.43
87 88 7.913821 GTCTTTTCCTTCAGTTTATGTTCGTTT 59.086 33.333 0.00 0.00 0.00 3.60
88 89 7.415229 GTCTTTTCCTTCAGTTTATGTTCGTT 58.585 34.615 0.00 0.00 0.00 3.85
89 90 6.017357 GGTCTTTTCCTTCAGTTTATGTTCGT 60.017 38.462 0.00 0.00 0.00 3.85
90 91 6.371389 GGTCTTTTCCTTCAGTTTATGTTCG 58.629 40.000 0.00 0.00 0.00 3.95
91 92 6.017357 ACGGTCTTTTCCTTCAGTTTATGTTC 60.017 38.462 0.00 0.00 0.00 3.18
92 93 5.826208 ACGGTCTTTTCCTTCAGTTTATGTT 59.174 36.000 0.00 0.00 0.00 2.71
93 94 5.238650 CACGGTCTTTTCCTTCAGTTTATGT 59.761 40.000 0.00 0.00 0.00 2.29
94 95 5.689819 CACGGTCTTTTCCTTCAGTTTATG 58.310 41.667 0.00 0.00 0.00 1.90
95 96 4.215613 GCACGGTCTTTTCCTTCAGTTTAT 59.784 41.667 0.00 0.00 0.00 1.40
96 97 3.562557 GCACGGTCTTTTCCTTCAGTTTA 59.437 43.478 0.00 0.00 0.00 2.01
97 98 2.357952 GCACGGTCTTTTCCTTCAGTTT 59.642 45.455 0.00 0.00 0.00 2.66
98 99 1.947456 GCACGGTCTTTTCCTTCAGTT 59.053 47.619 0.00 0.00 0.00 3.16
99 100 1.594331 GCACGGTCTTTTCCTTCAGT 58.406 50.000 0.00 0.00 0.00 3.41
100 101 0.512952 CGCACGGTCTTTTCCTTCAG 59.487 55.000 0.00 0.00 0.00 3.02
101 102 1.503818 GCGCACGGTCTTTTCCTTCA 61.504 55.000 0.30 0.00 0.00 3.02
102 103 1.206831 GCGCACGGTCTTTTCCTTC 59.793 57.895 0.30 0.00 0.00 3.46
103 104 2.258726 GGCGCACGGTCTTTTCCTT 61.259 57.895 10.83 0.00 0.00 3.36
104 105 2.668550 GGCGCACGGTCTTTTCCT 60.669 61.111 10.83 0.00 0.00 3.36
105 106 3.733960 GGGCGCACGGTCTTTTCC 61.734 66.667 10.83 0.00 0.00 3.13
106 107 2.966309 CTGGGCGCACGGTCTTTTC 61.966 63.158 11.30 0.00 0.00 2.29
107 108 2.978010 CTGGGCGCACGGTCTTTT 60.978 61.111 11.30 0.00 0.00 2.27
113 114 4.814294 GAGTACCTGGGCGCACGG 62.814 72.222 12.84 12.84 0.00 4.94
114 115 4.063967 TGAGTACCTGGGCGCACG 62.064 66.667 10.83 1.33 0.00 5.34
115 116 2.434359 GTGAGTACCTGGGCGCAC 60.434 66.667 10.83 6.04 0.00 5.34
116 117 3.702048 GGTGAGTACCTGGGCGCA 61.702 66.667 10.83 2.47 43.97 6.09
125 126 0.533491 TACCCGCATGTGGTGAGTAC 59.467 55.000 23.44 0.00 36.57 2.73
126 127 0.821517 CTACCCGCATGTGGTGAGTA 59.178 55.000 23.44 16.48 36.57 2.59
127 128 1.192146 ACTACCCGCATGTGGTGAGT 61.192 55.000 23.44 20.87 36.57 3.41
128 129 0.036388 AACTACCCGCATGTGGTGAG 60.036 55.000 23.44 20.26 36.57 3.51
129 130 0.036765 GAACTACCCGCATGTGGTGA 60.037 55.000 23.44 10.07 36.57 4.02
130 131 1.024579 GGAACTACCCGCATGTGGTG 61.025 60.000 23.44 16.67 36.57 4.17
131 132 1.198759 AGGAACTACCCGCATGTGGT 61.199 55.000 23.44 17.67 36.02 4.16
132 133 0.828022 TAGGAACTACCCGCATGTGG 59.172 55.000 18.88 18.88 41.75 4.17
133 134 1.754803 TCTAGGAACTACCCGCATGTG 59.245 52.381 0.00 0.00 41.75 3.21
134 135 2.032620 CTCTAGGAACTACCCGCATGT 58.967 52.381 0.00 0.00 41.75 3.21
135 136 1.269831 GCTCTAGGAACTACCCGCATG 60.270 57.143 0.00 0.00 41.75 4.06
136 137 1.041437 GCTCTAGGAACTACCCGCAT 58.959 55.000 0.00 0.00 41.75 4.73
137 138 1.041447 GGCTCTAGGAACTACCCGCA 61.041 60.000 0.00 0.00 41.75 5.69
138 139 1.041447 TGGCTCTAGGAACTACCCGC 61.041 60.000 0.00 0.00 41.75 6.13
139 140 1.033574 CTGGCTCTAGGAACTACCCG 58.966 60.000 0.00 0.00 41.75 5.28
140 141 2.033372 GTCTGGCTCTAGGAACTACCC 58.967 57.143 0.00 0.00 41.75 3.69
141 142 2.033372 GGTCTGGCTCTAGGAACTACC 58.967 57.143 0.00 0.00 41.75 3.18
142 143 1.677052 CGGTCTGGCTCTAGGAACTAC 59.323 57.143 0.00 0.00 41.75 2.73
143 144 1.284198 ACGGTCTGGCTCTAGGAACTA 59.716 52.381 0.00 0.00 41.75 2.24
144 145 0.039911 ACGGTCTGGCTCTAGGAACT 59.960 55.000 0.00 0.00 46.37 3.01
145 146 0.456628 GACGGTCTGGCTCTAGGAAC 59.543 60.000 0.00 0.00 0.00 3.62
146 147 0.683504 GGACGGTCTGGCTCTAGGAA 60.684 60.000 8.23 0.00 0.00 3.36
147 148 1.076923 GGACGGTCTGGCTCTAGGA 60.077 63.158 8.23 0.00 0.00 2.94
148 149 2.482333 CGGACGGTCTGGCTCTAGG 61.482 68.421 9.16 0.00 0.00 3.02
149 150 1.749638 ACGGACGGTCTGGCTCTAG 60.750 63.158 20.38 0.00 0.00 2.43
150 151 2.044555 CACGGACGGTCTGGCTCTA 61.045 63.158 20.38 0.00 0.00 2.43
151 152 3.374402 CACGGACGGTCTGGCTCT 61.374 66.667 20.38 0.00 0.00 4.09
154 155 3.701604 CTAGCACGGACGGTCTGGC 62.702 68.421 20.38 18.71 0.00 4.85
155 156 1.874345 AACTAGCACGGACGGTCTGG 61.874 60.000 20.38 10.71 0.00 3.86
156 157 0.806868 TAACTAGCACGGACGGTCTG 59.193 55.000 15.28 15.28 0.00 3.51
157 158 1.093159 CTAACTAGCACGGACGGTCT 58.907 55.000 8.23 0.00 0.00 3.85
158 159 1.063764 CTCTAACTAGCACGGACGGTC 59.936 57.143 0.00 0.00 0.00 4.79
159 160 1.093159 CTCTAACTAGCACGGACGGT 58.907 55.000 0.00 0.00 0.00 4.83
160 161 0.381089 CCTCTAACTAGCACGGACGG 59.619 60.000 0.00 0.00 0.00 4.79
161 162 1.376543 TCCTCTAACTAGCACGGACG 58.623 55.000 0.00 0.00 0.00 4.79
162 163 4.388378 AAATCCTCTAACTAGCACGGAC 57.612 45.455 0.00 0.00 0.00 4.79
163 164 4.583489 CCTAAATCCTCTAACTAGCACGGA 59.417 45.833 0.00 0.00 0.00 4.69
164 165 4.341520 ACCTAAATCCTCTAACTAGCACGG 59.658 45.833 0.00 0.00 0.00 4.94
165 166 5.517322 ACCTAAATCCTCTAACTAGCACG 57.483 43.478 0.00 0.00 0.00 5.34
166 167 6.641474 ACAACCTAAATCCTCTAACTAGCAC 58.359 40.000 0.00 0.00 0.00 4.40
167 168 6.869206 ACAACCTAAATCCTCTAACTAGCA 57.131 37.500 0.00 0.00 0.00 3.49
168 169 7.328737 TCAACAACCTAAATCCTCTAACTAGC 58.671 38.462 0.00 0.00 0.00 3.42
169 170 7.492994 GCTCAACAACCTAAATCCTCTAACTAG 59.507 40.741 0.00 0.00 0.00 2.57
170 171 7.038587 TGCTCAACAACCTAAATCCTCTAACTA 60.039 37.037 0.00 0.00 0.00 2.24
171 172 6.174049 GCTCAACAACCTAAATCCTCTAACT 58.826 40.000 0.00 0.00 0.00 2.24
172 173 5.938125 TGCTCAACAACCTAAATCCTCTAAC 59.062 40.000 0.00 0.00 0.00 2.34
173 174 6.121776 TGCTCAACAACCTAAATCCTCTAA 57.878 37.500 0.00 0.00 0.00 2.10
174 175 5.755409 TGCTCAACAACCTAAATCCTCTA 57.245 39.130 0.00 0.00 0.00 2.43
175 176 4.640771 TGCTCAACAACCTAAATCCTCT 57.359 40.909 0.00 0.00 0.00 3.69
176 177 5.461526 GTTTGCTCAACAACCTAAATCCTC 58.538 41.667 0.00 0.00 38.23 3.71
177 178 4.280929 GGTTTGCTCAACAACCTAAATCCT 59.719 41.667 2.36 0.00 38.23 3.24
178 179 4.556233 GGTTTGCTCAACAACCTAAATCC 58.444 43.478 2.36 0.00 38.23 3.01
179 180 4.226761 CGGTTTGCTCAACAACCTAAATC 58.773 43.478 0.00 0.00 38.23 2.17
180 181 3.634910 ACGGTTTGCTCAACAACCTAAAT 59.365 39.130 0.00 0.00 38.23 1.40
181 182 3.018149 ACGGTTTGCTCAACAACCTAAA 58.982 40.909 0.00 0.00 38.23 1.85
182 183 2.614983 GACGGTTTGCTCAACAACCTAA 59.385 45.455 0.00 0.00 38.23 2.69
183 184 2.158871 AGACGGTTTGCTCAACAACCTA 60.159 45.455 0.00 0.00 38.23 3.08
184 185 1.021968 GACGGTTTGCTCAACAACCT 58.978 50.000 0.00 0.00 38.23 3.50
185 186 1.002792 GAGACGGTTTGCTCAACAACC 60.003 52.381 2.36 0.00 38.23 3.77
186 187 1.002792 GGAGACGGTTTGCTCAACAAC 60.003 52.381 0.00 0.00 38.23 3.32
187 188 1.305201 GGAGACGGTTTGCTCAACAA 58.695 50.000 0.00 0.00 37.07 2.83
188 189 0.179234 TGGAGACGGTTTGCTCAACA 59.821 50.000 0.00 0.00 37.07 3.33
189 190 1.305201 TTGGAGACGGTTTGCTCAAC 58.695 50.000 0.00 0.00 32.83 3.18
190 191 2.045561 TTTGGAGACGGTTTGCTCAA 57.954 45.000 0.00 0.00 32.83 3.02
191 192 2.045561 TTTTGGAGACGGTTTGCTCA 57.954 45.000 0.00 0.00 32.83 4.26
192 193 3.643159 AATTTTGGAGACGGTTTGCTC 57.357 42.857 0.00 0.00 0.00 4.26
193 194 5.722021 ATAAATTTTGGAGACGGTTTGCT 57.278 34.783 0.00 0.00 0.00 3.91
194 195 6.864165 TGTAATAAATTTTGGAGACGGTTTGC 59.136 34.615 0.00 0.00 0.00 3.68
195 196 8.293867 TCTGTAATAAATTTTGGAGACGGTTTG 58.706 33.333 0.00 0.00 0.00 2.93
196 197 8.294577 GTCTGTAATAAATTTTGGAGACGGTTT 58.705 33.333 0.00 0.00 0.00 3.27
197 198 7.360607 CGTCTGTAATAAATTTTGGAGACGGTT 60.361 37.037 19.55 0.70 44.81 4.44
198 199 6.091713 CGTCTGTAATAAATTTTGGAGACGGT 59.908 38.462 19.55 0.00 44.81 4.83
199 200 6.475207 CGTCTGTAATAAATTTTGGAGACGG 58.525 40.000 19.55 9.02 44.81 4.79
200 201 6.091713 ACCGTCTGTAATAAATTTTGGAGACG 59.908 38.462 19.97 19.97 46.91 4.18
201 202 7.373778 ACCGTCTGTAATAAATTTTGGAGAC 57.626 36.000 0.00 1.40 0.00 3.36
202 203 7.989416 AACCGTCTGTAATAAATTTTGGAGA 57.011 32.000 0.00 0.00 0.00 3.71
203 204 7.480542 CGAAACCGTCTGTAATAAATTTTGGAG 59.519 37.037 0.00 0.00 0.00 3.86
204 205 7.172875 TCGAAACCGTCTGTAATAAATTTTGGA 59.827 33.333 0.00 0.00 0.00 3.53
205 206 7.269724 GTCGAAACCGTCTGTAATAAATTTTGG 59.730 37.037 0.00 0.00 0.00 3.28
206 207 8.013378 AGTCGAAACCGTCTGTAATAAATTTTG 58.987 33.333 0.00 0.00 0.00 2.44
207 208 8.091385 AGTCGAAACCGTCTGTAATAAATTTT 57.909 30.769 0.00 0.00 0.00 1.82
208 209 7.662604 AGTCGAAACCGTCTGTAATAAATTT 57.337 32.000 0.00 0.00 0.00 1.82
209 210 8.937634 ATAGTCGAAACCGTCTGTAATAAATT 57.062 30.769 0.00 0.00 0.00 1.82
210 211 7.650903 GGATAGTCGAAACCGTCTGTAATAAAT 59.349 37.037 0.00 0.00 0.00 1.40
211 212 6.974622 GGATAGTCGAAACCGTCTGTAATAAA 59.025 38.462 0.00 0.00 0.00 1.40
212 213 6.095300 TGGATAGTCGAAACCGTCTGTAATAA 59.905 38.462 0.00 0.00 0.00 1.40
213 214 5.589855 TGGATAGTCGAAACCGTCTGTAATA 59.410 40.000 0.00 0.00 0.00 0.98
214 215 4.400251 TGGATAGTCGAAACCGTCTGTAAT 59.600 41.667 0.00 0.00 0.00 1.89
215 216 3.758023 TGGATAGTCGAAACCGTCTGTAA 59.242 43.478 0.00 0.00 0.00 2.41
216 217 3.346315 TGGATAGTCGAAACCGTCTGTA 58.654 45.455 0.00 0.00 0.00 2.74
217 218 2.165167 TGGATAGTCGAAACCGTCTGT 58.835 47.619 0.00 0.00 0.00 3.41
218 219 2.921754 GTTGGATAGTCGAAACCGTCTG 59.078 50.000 0.00 0.00 0.00 3.51
219 220 2.094338 GGTTGGATAGTCGAAACCGTCT 60.094 50.000 0.00 0.00 33.30 4.18
220 221 2.265683 GGTTGGATAGTCGAAACCGTC 58.734 52.381 0.00 0.00 33.30 4.79
221 222 1.619827 TGGTTGGATAGTCGAAACCGT 59.380 47.619 9.30 0.00 44.14 4.83
222 223 1.997606 GTGGTTGGATAGTCGAAACCG 59.002 52.381 9.30 0.00 44.14 4.44
223 224 2.027469 AGGTGGTTGGATAGTCGAAACC 60.027 50.000 7.38 7.38 42.03 3.27
224 225 3.329929 AGGTGGTTGGATAGTCGAAAC 57.670 47.619 0.00 0.00 0.00 2.78
225 226 3.670625 CAAGGTGGTTGGATAGTCGAAA 58.329 45.455 0.00 0.00 31.82 3.46
226 227 3.328382 CAAGGTGGTTGGATAGTCGAA 57.672 47.619 0.00 0.00 31.82 3.71
242 243 4.103153 TGCCTCTAATAATCACCTCCAAGG 59.897 45.833 0.00 0.00 42.49 3.61
243 244 5.296151 TGCCTCTAATAATCACCTCCAAG 57.704 43.478 0.00 0.00 0.00 3.61
244 245 4.444876 GCTGCCTCTAATAATCACCTCCAA 60.445 45.833 0.00 0.00 0.00 3.53
245 246 3.071602 GCTGCCTCTAATAATCACCTCCA 59.928 47.826 0.00 0.00 0.00 3.86
246 247 3.326297 AGCTGCCTCTAATAATCACCTCC 59.674 47.826 0.00 0.00 0.00 4.30
247 248 4.615588 AGCTGCCTCTAATAATCACCTC 57.384 45.455 0.00 0.00 0.00 3.85
248 249 5.128919 CAAAGCTGCCTCTAATAATCACCT 58.871 41.667 0.00 0.00 0.00 4.00
249 250 4.884164 ACAAAGCTGCCTCTAATAATCACC 59.116 41.667 0.00 0.00 0.00 4.02
250 251 5.008118 GGACAAAGCTGCCTCTAATAATCAC 59.992 44.000 0.00 0.00 0.00 3.06
251 252 5.104360 AGGACAAAGCTGCCTCTAATAATCA 60.104 40.000 0.00 0.00 0.00 2.57
252 253 5.238214 CAGGACAAAGCTGCCTCTAATAATC 59.762 44.000 0.00 0.00 29.71 1.75
253 254 5.128919 CAGGACAAAGCTGCCTCTAATAAT 58.871 41.667 0.00 0.00 29.71 1.28
254 255 4.517285 CAGGACAAAGCTGCCTCTAATAA 58.483 43.478 0.00 0.00 29.71 1.40
255 256 3.682718 GCAGGACAAAGCTGCCTCTAATA 60.683 47.826 0.00 0.00 38.08 0.98
256 257 2.943199 GCAGGACAAAGCTGCCTCTAAT 60.943 50.000 0.00 0.00 38.08 1.73
257 258 1.611673 GCAGGACAAAGCTGCCTCTAA 60.612 52.381 0.00 0.00 38.08 2.10
258 259 0.036010 GCAGGACAAAGCTGCCTCTA 60.036 55.000 0.00 0.00 38.08 2.43
259 260 1.303155 GCAGGACAAAGCTGCCTCT 60.303 57.895 0.00 0.00 38.08 3.69
260 261 0.892814 AAGCAGGACAAAGCTGCCTC 60.893 55.000 0.00 0.00 44.38 4.70
261 262 1.152368 AAGCAGGACAAAGCTGCCT 59.848 52.632 0.00 0.00 44.38 4.75
262 263 1.288127 CAAGCAGGACAAAGCTGCC 59.712 57.895 0.00 0.00 44.38 4.85
263 264 1.288127 CCAAGCAGGACAAAGCTGC 59.712 57.895 0.00 0.00 41.70 5.25
264 265 0.595095 GACCAAGCAGGACAAAGCTG 59.405 55.000 1.83 0.00 41.70 4.24
265 266 0.183492 TGACCAAGCAGGACAAAGCT 59.817 50.000 1.83 0.00 44.31 3.74
266 267 0.312102 GTGACCAAGCAGGACAAAGC 59.688 55.000 1.83 0.00 43.58 3.51
267 268 1.679139 TGTGACCAAGCAGGACAAAG 58.321 50.000 1.83 0.00 43.58 2.77
268 269 1.748493 GTTGTGACCAAGCAGGACAAA 59.252 47.619 1.83 0.00 43.58 2.83
269 270 1.388547 GTTGTGACCAAGCAGGACAA 58.611 50.000 1.83 0.91 43.58 3.18
270 271 0.813610 CGTTGTGACCAAGCAGGACA 60.814 55.000 1.83 0.00 41.22 4.02
271 272 1.507141 CCGTTGTGACCAAGCAGGAC 61.507 60.000 1.83 0.00 41.22 3.85
272 273 1.227823 CCGTTGTGACCAAGCAGGA 60.228 57.895 1.83 0.00 41.22 3.86
273 274 1.101049 AACCGTTGTGACCAAGCAGG 61.101 55.000 0.00 0.00 45.67 4.85
274 275 0.738389 AAACCGTTGTGACCAAGCAG 59.262 50.000 0.00 0.00 0.00 4.24
275 276 0.736053 GAAACCGTTGTGACCAAGCA 59.264 50.000 0.00 0.00 0.00 3.91
276 277 0.030235 GGAAACCGTTGTGACCAAGC 59.970 55.000 0.00 0.00 0.00 4.01
277 278 0.306533 CGGAAACCGTTGTGACCAAG 59.693 55.000 1.80 0.00 42.73 3.61
278 279 2.395651 CGGAAACCGTTGTGACCAA 58.604 52.632 1.80 0.00 42.73 3.67
279 280 4.128139 CGGAAACCGTTGTGACCA 57.872 55.556 1.80 0.00 42.73 4.02
289 290 2.047179 AAGCGGCTCTCGGAAACC 60.047 61.111 1.45 0.00 39.69 3.27
290 291 0.172803 TAGAAGCGGCTCTCGGAAAC 59.827 55.000 1.45 0.00 39.69 2.78
291 292 0.892755 TTAGAAGCGGCTCTCGGAAA 59.107 50.000 1.45 0.00 39.69 3.13
292 293 1.112113 ATTAGAAGCGGCTCTCGGAA 58.888 50.000 1.45 4.41 39.69 4.30
293 294 0.385751 CATTAGAAGCGGCTCTCGGA 59.614 55.000 1.45 0.00 39.69 4.55
294 295 1.218230 GCATTAGAAGCGGCTCTCGG 61.218 60.000 1.45 0.00 39.69 4.63
295 296 1.218230 GGCATTAGAAGCGGCTCTCG 61.218 60.000 1.45 0.00 42.76 4.04
296 297 1.218230 CGGCATTAGAAGCGGCTCTC 61.218 60.000 1.45 3.50 0.00 3.20
297 298 1.227380 CGGCATTAGAAGCGGCTCT 60.227 57.895 1.45 5.08 0.00 4.09
298 299 3.324035 CGGCATTAGAAGCGGCTC 58.676 61.111 1.45 0.00 0.00 4.70
301 302 0.451783 AAAAGCGGCATTAGAAGCGG 59.548 50.000 1.45 0.00 35.67 5.52
302 303 2.262572 AAAAAGCGGCATTAGAAGCG 57.737 45.000 1.45 0.00 34.34 4.68
319 320 6.993308 TCTACACCAACATGCACTAGTAAAAA 59.007 34.615 0.00 0.00 0.00 1.94
320 321 6.526526 TCTACACCAACATGCACTAGTAAAA 58.473 36.000 0.00 0.00 0.00 1.52
321 322 6.014925 TCTCTACACCAACATGCACTAGTAAA 60.015 38.462 0.00 0.00 0.00 2.01
322 323 5.479027 TCTCTACACCAACATGCACTAGTAA 59.521 40.000 0.00 0.00 0.00 2.24
323 324 5.014202 TCTCTACACCAACATGCACTAGTA 58.986 41.667 0.00 0.00 0.00 1.82
324 325 3.832490 TCTCTACACCAACATGCACTAGT 59.168 43.478 0.00 0.00 0.00 2.57
325 326 4.456280 TCTCTACACCAACATGCACTAG 57.544 45.455 0.00 0.00 0.00 2.57
326 327 4.440112 CGATCTCTACACCAACATGCACTA 60.440 45.833 0.00 0.00 0.00 2.74
327 328 3.677148 CGATCTCTACACCAACATGCACT 60.677 47.826 0.00 0.00 0.00 4.40
328 329 2.604914 CGATCTCTACACCAACATGCAC 59.395 50.000 0.00 0.00 0.00 4.57
329 330 2.418609 CCGATCTCTACACCAACATGCA 60.419 50.000 0.00 0.00 0.00 3.96
330 331 2.159099 TCCGATCTCTACACCAACATGC 60.159 50.000 0.00 0.00 0.00 4.06
331 332 3.801114 TCCGATCTCTACACCAACATG 57.199 47.619 0.00 0.00 0.00 3.21
332 333 3.070159 CCATCCGATCTCTACACCAACAT 59.930 47.826 0.00 0.00 0.00 2.71
333 334 2.430694 CCATCCGATCTCTACACCAACA 59.569 50.000 0.00 0.00 0.00 3.33
334 335 2.693591 TCCATCCGATCTCTACACCAAC 59.306 50.000 0.00 0.00 0.00 3.77
335 336 3.026707 TCCATCCGATCTCTACACCAA 57.973 47.619 0.00 0.00 0.00 3.67
336 337 2.748209 TCCATCCGATCTCTACACCA 57.252 50.000 0.00 0.00 0.00 4.17
337 338 3.859411 GATCCATCCGATCTCTACACC 57.141 52.381 0.00 0.00 43.65 4.16
390 391 6.661377 TGAGTCTACTTCTCTCATAGCAGTTT 59.339 38.462 0.00 0.00 33.43 2.66
435 438 3.555139 TGTTGTCGTGGTTTTTAGGTACG 59.445 43.478 0.00 0.00 36.20 3.67
439 442 4.989044 AGTTTGTTGTCGTGGTTTTTAGG 58.011 39.130 0.00 0.00 0.00 2.69
511 516 7.394016 TGCATTCTTTCTAAATCACTAGTCCA 58.606 34.615 0.00 0.00 0.00 4.02
530 535 9.098355 GGAGGGAGTAAAATTTAAAATGCATTC 57.902 33.333 13.38 0.00 0.00 2.67
592 598 6.637254 CACTCGTTTCAATGCGTATATAGTCT 59.363 38.462 0.00 0.00 0.00 3.24
598 604 4.924462 TGTTCACTCGTTTCAATGCGTATA 59.076 37.500 0.00 0.00 0.00 1.47
651 665 9.924650 ATGTTCTAATACTTCGTGTTCTAAACT 57.075 29.630 0.00 0.00 0.00 2.66
660 674 8.928270 ACTAAAGGATGTTCTAATACTTCGTG 57.072 34.615 0.00 0.00 28.86 4.35
684 698 5.934402 TTTCTACTCCCTTCATCCACTAC 57.066 43.478 0.00 0.00 0.00 2.73
720 734 9.964303 TGTCATGGCATACAAAATAATTGTATC 57.036 29.630 10.10 6.57 41.99 2.24
739 753 5.648178 TGATTTGGAAGTCATTGTCATGG 57.352 39.130 0.00 0.00 0.00 3.66
779 793 2.853914 GTGAACGCGCTTCTCACC 59.146 61.111 17.65 5.20 34.63 4.02
798 812 3.552604 TTTTGTGCCGAGATGCTAAAC 57.447 42.857 0.00 0.00 0.00 2.01
809 823 1.740025 GAGGAGGATCTTTTTGTGCCG 59.260 52.381 0.00 0.00 33.73 5.69
836 856 3.367703 CCCTGCTGCTTTATGACCTTTTG 60.368 47.826 0.00 0.00 0.00 2.44
931 951 1.929836 GCGCACAAGAGAACATAGGAG 59.070 52.381 0.30 0.00 0.00 3.69
972 992 0.811915 ACGATGACGAGGAGACCTTG 59.188 55.000 0.00 0.00 42.66 3.61
1211 1231 2.640316 AATCGGTAGAAATGGGAGGC 57.360 50.000 0.00 0.00 0.00 4.70
1212 1232 3.136626 AGGAAATCGGTAGAAATGGGAGG 59.863 47.826 0.00 0.00 0.00 4.30
1268 1288 0.391793 GCTTGACCTGCCTACTCCAC 60.392 60.000 0.00 0.00 0.00 4.02
1280 1300 0.251787 AGACCCCCATTTGCTTGACC 60.252 55.000 0.00 0.00 0.00 4.02
1282 1302 2.580322 TGATAGACCCCCATTTGCTTGA 59.420 45.455 0.00 0.00 0.00 3.02
1313 1334 7.325338 GCATAAAGTAAACGAACTTTCTTTCCC 59.675 37.037 15.09 1.97 44.43 3.97
1321 1342 9.744468 AATTTTCTGCATAAAGTAAACGAACTT 57.256 25.926 0.00 0.00 41.46 2.66
1322 1343 9.744468 AAATTTTCTGCATAAAGTAAACGAACT 57.256 25.926 0.00 0.00 0.00 3.01
1323 1344 9.989394 GAAATTTTCTGCATAAAGTAAACGAAC 57.011 29.630 1.79 0.00 0.00 3.95
1324 1345 9.959749 AGAAATTTTCTGCATAAAGTAAACGAA 57.040 25.926 10.82 0.00 38.91 3.85
1365 1386 5.173492 GTCACAACAACTAGAGAAAGACGAC 59.827 44.000 0.00 0.00 0.00 4.34
1369 1390 6.465439 TCAGTCACAACAACTAGAGAAAGA 57.535 37.500 0.00 0.00 0.00 2.52
1379 1400 3.632145 ACCAGGAATTCAGTCACAACAAC 59.368 43.478 7.93 0.00 0.00 3.32
1394 1415 1.361204 TCTCCAATCAGCACCAGGAA 58.639 50.000 0.00 0.00 0.00 3.36
1426 1447 3.073650 AGAGAGAAGGTGCAAATTCAGGT 59.926 43.478 13.08 0.00 0.00 4.00
1490 1511 6.609212 TGATGGCCCAGTAGCAAAATAAAATA 59.391 34.615 0.00 0.00 0.00 1.40
1495 1516 3.660970 TGATGGCCCAGTAGCAAAATA 57.339 42.857 0.00 0.00 0.00 1.40
1578 1600 5.644206 TGAAATGATCCAAATTGCAACCATG 59.356 36.000 0.00 0.69 0.00 3.66
1926 1948 6.875948 ACATAAATATGAGTTAATGCGGCA 57.124 33.333 4.58 4.58 37.15 5.69
1962 2000 8.545984 ATCAAGGCTATGATGTTGGTAACACAG 61.546 40.741 10.16 0.00 45.50 3.66
1974 2012 7.071698 ACCCTACCATATATCAAGGCTATGATG 59.928 40.741 17.08 0.81 40.21 3.07
1988 2026 7.132805 AGCATGCTTATCTACCCTACCATATA 58.867 38.462 16.30 0.00 0.00 0.86
2018 2056 8.918202 TCTTAGTCTTTAGCTGAATCCAAAAA 57.082 30.769 0.00 0.00 0.00 1.94
2906 2961 8.642908 AACAAGAAAACTAACCATTAGCAAAC 57.357 30.769 0.00 0.00 36.71 2.93
2973 3029 8.918202 TGAAATCAGTAAGTGTAATTTCACCT 57.082 30.769 11.17 1.85 39.89 4.00
3203 3259 1.111277 AGCCAAAAGTTGCGAAGGTT 58.889 45.000 0.00 0.00 0.00 3.50
3583 3650 4.448537 AGCACTCTGAGTCACTGATTAC 57.551 45.455 7.49 0.00 0.00 1.89
3597 3664 6.770785 TGGTACAAAAGATAAACAAGCACTCT 59.229 34.615 0.00 0.00 31.92 3.24
3600 3667 6.966021 TCTGGTACAAAAGATAAACAAGCAC 58.034 36.000 0.00 0.00 38.70 4.40
3643 3710 1.004044 CTTGATGTCCTCCCAGTGCTT 59.996 52.381 0.00 0.00 0.00 3.91
3672 3739 5.587443 TGGTCAGTGATTGAATGCAAGATAG 59.413 40.000 0.00 0.00 37.61 2.08
3720 3787 7.815068 ACTGCAGTCTGTGTAATAAGAAAGTAG 59.185 37.037 15.25 0.00 0.00 2.57
3789 3856 3.411446 TGATGTGCAACCCTTAGTTCAG 58.589 45.455 0.00 0.00 36.18 3.02
3905 4178 6.218108 ACCTTTTCCTAATAGTGTACCTCG 57.782 41.667 0.00 0.00 0.00 4.63
4208 4491 1.896220 TGTGGCTGTTGGTGATCTTC 58.104 50.000 0.00 0.00 0.00 2.87
4306 4589 4.196971 GTTCCGGAATTAAGCATACAGGT 58.803 43.478 22.04 0.00 0.00 4.00
4329 4612 1.272554 AAGCCTGTAGGGTAGGGCAC 61.273 60.000 2.62 0.00 46.73 5.01
4606 4889 0.723981 GATGTCACCTTCTTCAGCGC 59.276 55.000 0.00 0.00 0.00 5.92
4648 4931 2.229792 GGTTGATGCTTCTGTTGTGGA 58.770 47.619 0.88 0.00 0.00 4.02
4804 5087 2.831770 CCGATGCCCAGCAGGTAT 59.168 61.111 0.00 0.00 44.90 2.73
4866 5149 0.897401 GCTGGCTGCCTTTCCTCTTT 60.897 55.000 21.03 0.00 35.15 2.52
4882 5165 3.260483 GATCACCGCAGCTCGCTG 61.260 66.667 14.30 14.30 46.15 5.18
4991 5274 3.844211 ACTAAGTGGGTGCTTATCTCCAA 59.156 43.478 0.00 0.00 31.42 3.53
4998 5281 7.729124 ATACTTCTAACTAAGTGGGTGCTTA 57.271 36.000 0.00 0.00 39.95 3.09
5308 5595 3.923017 ATGCTTAGTTTCCACTGCAAC 57.077 42.857 0.00 0.00 35.99 4.17
5325 5612 2.163412 TCCCTGCATCGTAAACAAATGC 59.837 45.455 9.41 9.41 44.72 3.56
5339 5626 6.614694 TCAGTTTAACTAACTATCCCTGCA 57.385 37.500 0.00 0.00 45.29 4.41
5340 5627 6.877322 TGTTCAGTTTAACTAACTATCCCTGC 59.123 38.462 0.00 0.00 45.29 4.85
5341 5628 7.333672 GGTGTTCAGTTTAACTAACTATCCCTG 59.666 40.741 0.00 0.00 45.29 4.45
5343 5630 6.312180 CGGTGTTCAGTTTAACTAACTATCCC 59.688 42.308 0.00 3.09 45.29 3.85
5344 5631 7.062722 GTCGGTGTTCAGTTTAACTAACTATCC 59.937 40.741 0.00 6.92 45.29 2.59
5345 5632 7.201299 CGTCGGTGTTCAGTTTAACTAACTATC 60.201 40.741 0.00 0.55 45.29 2.08
5346 5633 6.583806 CGTCGGTGTTCAGTTTAACTAACTAT 59.416 38.462 0.00 0.00 45.29 2.12
5349 5636 4.606894 GCGTCGGTGTTCAGTTTAACTAAC 60.607 45.833 0.00 4.27 36.99 2.34
5350 5637 3.490526 GCGTCGGTGTTCAGTTTAACTAA 59.509 43.478 0.00 0.00 0.00 2.24
5351 5638 3.052036 GCGTCGGTGTTCAGTTTAACTA 58.948 45.455 0.00 0.00 0.00 2.24
5352 5639 1.862827 GCGTCGGTGTTCAGTTTAACT 59.137 47.619 0.00 0.00 0.00 2.24
5353 5640 1.070376 GGCGTCGGTGTTCAGTTTAAC 60.070 52.381 0.00 0.00 0.00 2.01
5355 5642 0.390124 AGGCGTCGGTGTTCAGTTTA 59.610 50.000 0.00 0.00 0.00 2.01
5356 5643 0.878961 GAGGCGTCGGTGTTCAGTTT 60.879 55.000 0.00 0.00 0.00 2.66
5357 5644 1.300697 GAGGCGTCGGTGTTCAGTT 60.301 57.895 0.00 0.00 0.00 3.16
5358 5645 1.745320 AAGAGGCGTCGGTGTTCAGT 61.745 55.000 0.00 0.00 0.00 3.41
5359 5646 0.600255 AAAGAGGCGTCGGTGTTCAG 60.600 55.000 0.00 0.00 0.00 3.02
5360 5647 0.599204 GAAAGAGGCGTCGGTGTTCA 60.599 55.000 0.00 0.00 0.00 3.18
5361 5648 0.599204 TGAAAGAGGCGTCGGTGTTC 60.599 55.000 0.00 4.83 0.00 3.18
5364 5651 0.389817 TGATGAAAGAGGCGTCGGTG 60.390 55.000 0.00 0.00 0.00 4.94
5365 5652 0.389948 GTGATGAAAGAGGCGTCGGT 60.390 55.000 0.00 0.00 0.00 4.69
5366 5653 0.108615 AGTGATGAAAGAGGCGTCGG 60.109 55.000 0.00 0.00 0.00 4.79
5367 5654 0.994995 CAGTGATGAAAGAGGCGTCG 59.005 55.000 0.00 0.00 0.00 5.12
5368 5655 2.370281 TCAGTGATGAAAGAGGCGTC 57.630 50.000 0.00 0.00 0.00 5.19
5370 5657 3.309138 CAGAATCAGTGATGAAAGAGGCG 59.691 47.826 6.34 0.00 0.00 5.52
5372 5659 4.841422 ACCAGAATCAGTGATGAAAGAGG 58.159 43.478 6.34 6.13 0.00 3.69
5373 5660 5.485620 TGACCAGAATCAGTGATGAAAGAG 58.514 41.667 6.34 0.00 0.00 2.85
5374 5661 5.488262 TGACCAGAATCAGTGATGAAAGA 57.512 39.130 6.34 0.00 0.00 2.52
5375 5662 5.123502 CCTTGACCAGAATCAGTGATGAAAG 59.876 44.000 6.34 4.45 0.00 2.62
5376 5663 5.005740 CCTTGACCAGAATCAGTGATGAAA 58.994 41.667 6.34 0.00 0.00 2.69
5378 5665 3.584406 ACCTTGACCAGAATCAGTGATGA 59.416 43.478 6.34 0.00 0.00 2.92
5379 5666 3.947868 ACCTTGACCAGAATCAGTGATG 58.052 45.455 6.34 0.00 0.00 3.07
5380 5667 4.647564 AACCTTGACCAGAATCAGTGAT 57.352 40.909 0.00 0.00 0.00 3.06
5382 5669 3.187227 CGAAACCTTGACCAGAATCAGTG 59.813 47.826 0.00 0.00 0.00 3.66
5383 5670 3.403038 CGAAACCTTGACCAGAATCAGT 58.597 45.455 0.00 0.00 0.00 3.41
5384 5671 2.744202 CCGAAACCTTGACCAGAATCAG 59.256 50.000 0.00 0.00 0.00 2.90
5385 5672 2.370519 TCCGAAACCTTGACCAGAATCA 59.629 45.455 0.00 0.00 0.00 2.57
5388 5675 3.284793 TTTCCGAAACCTTGACCAGAA 57.715 42.857 0.00 0.00 0.00 3.02
5389 5676 3.146066 CATTTCCGAAACCTTGACCAGA 58.854 45.455 0.00 0.00 0.00 3.86
5390 5677 2.228822 CCATTTCCGAAACCTTGACCAG 59.771 50.000 0.00 0.00 0.00 4.00
5391 5678 2.158593 TCCATTTCCGAAACCTTGACCA 60.159 45.455 0.00 0.00 0.00 4.02
5392 5679 2.510613 TCCATTTCCGAAACCTTGACC 58.489 47.619 0.00 0.00 0.00 4.02
5393 5680 4.485163 CAATCCATTTCCGAAACCTTGAC 58.515 43.478 0.00 0.00 0.00 3.18
5395 5682 3.056607 AGCAATCCATTTCCGAAACCTTG 60.057 43.478 0.00 0.10 0.00 3.61
5396 5683 3.165071 AGCAATCCATTTCCGAAACCTT 58.835 40.909 0.00 0.00 0.00 3.50
5397 5684 2.755103 GAGCAATCCATTTCCGAAACCT 59.245 45.455 0.00 0.00 0.00 3.50
5398 5685 2.491693 TGAGCAATCCATTTCCGAAACC 59.508 45.455 0.00 0.00 0.00 3.27
5399 5686 3.848272 TGAGCAATCCATTTCCGAAAC 57.152 42.857 0.00 0.00 0.00 2.78
5400 5687 4.746729 CATTGAGCAATCCATTTCCGAAA 58.253 39.130 0.00 0.00 0.00 3.46
5401 5688 3.429272 GCATTGAGCAATCCATTTCCGAA 60.429 43.478 0.00 0.00 44.79 4.30
5402 5689 2.099592 GCATTGAGCAATCCATTTCCGA 59.900 45.455 0.00 0.00 44.79 4.55
5403 5690 2.466846 GCATTGAGCAATCCATTTCCG 58.533 47.619 0.00 0.00 44.79 4.30
5419 5706 3.571401 AGTTCAGCTAGTTTGCAAGCATT 59.429 39.130 16.04 0.00 41.32 3.56
5420 5707 3.152341 AGTTCAGCTAGTTTGCAAGCAT 58.848 40.909 16.04 3.55 41.32 3.79
5421 5708 2.575532 AGTTCAGCTAGTTTGCAAGCA 58.424 42.857 16.04 1.04 41.32 3.91
5422 5709 3.632855 AAGTTCAGCTAGTTTGCAAGC 57.367 42.857 4.95 4.95 39.08 4.01
5423 5710 4.736793 CACAAAGTTCAGCTAGTTTGCAAG 59.263 41.667 14.18 4.31 40.49 4.01
5424 5711 4.397730 TCACAAAGTTCAGCTAGTTTGCAA 59.602 37.500 14.18 0.00 40.49 4.08
5425 5712 3.944650 TCACAAAGTTCAGCTAGTTTGCA 59.055 39.130 14.18 2.22 40.49 4.08
5426 5713 4.552166 TCACAAAGTTCAGCTAGTTTGC 57.448 40.909 14.18 0.00 40.49 3.68
5427 5714 5.066505 AGGTTCACAAAGTTCAGCTAGTTTG 59.933 40.000 13.10 13.10 41.84 2.93
5428 5715 5.193679 AGGTTCACAAAGTTCAGCTAGTTT 58.806 37.500 0.00 0.00 0.00 2.66
5429 5716 4.781934 AGGTTCACAAAGTTCAGCTAGTT 58.218 39.130 0.00 0.00 0.00 2.24
5431 5718 4.576463 ACAAGGTTCACAAAGTTCAGCTAG 59.424 41.667 0.00 0.00 0.00 3.42
5432 5719 4.335315 CACAAGGTTCACAAAGTTCAGCTA 59.665 41.667 0.00 0.00 0.00 3.32
5434 5721 3.128589 TCACAAGGTTCACAAAGTTCAGC 59.871 43.478 0.00 0.00 0.00 4.26
5435 5722 4.731773 GCTCACAAGGTTCACAAAGTTCAG 60.732 45.833 0.00 0.00 0.00 3.02
5436 5723 3.128589 GCTCACAAGGTTCACAAAGTTCA 59.871 43.478 0.00 0.00 0.00 3.18
5437 5724 3.378427 AGCTCACAAGGTTCACAAAGTTC 59.622 43.478 0.00 0.00 0.00 3.01
5438 5725 3.356290 AGCTCACAAGGTTCACAAAGTT 58.644 40.909 0.00 0.00 0.00 2.66
5440 5727 2.945008 TGAGCTCACAAGGTTCACAAAG 59.055 45.455 13.74 0.00 32.07 2.77
5441 5728 2.997980 TGAGCTCACAAGGTTCACAAA 58.002 42.857 13.74 0.00 32.07 2.83
5442 5729 2.708216 TGAGCTCACAAGGTTCACAA 57.292 45.000 13.74 0.00 32.07 3.33
5444 5731 1.198637 GCATGAGCTCACAAGGTTCAC 59.801 52.381 20.97 0.00 37.91 3.18
5445 5732 1.202794 TGCATGAGCTCACAAGGTTCA 60.203 47.619 20.97 0.00 42.74 3.18
5446 5733 1.527034 TGCATGAGCTCACAAGGTTC 58.473 50.000 20.97 0.00 42.74 3.62
5447 5734 2.211250 ATGCATGAGCTCACAAGGTT 57.789 45.000 20.97 0.00 42.74 3.50
5449 5736 2.097629 CAGAATGCATGAGCTCACAAGG 59.902 50.000 20.97 10.24 42.74 3.61
5450 5737 3.007635 TCAGAATGCATGAGCTCACAAG 58.992 45.455 20.97 13.25 42.74 3.16
5451 5738 3.062122 TCAGAATGCATGAGCTCACAA 57.938 42.857 20.97 7.99 42.74 3.33
5452 5739 2.773993 TCAGAATGCATGAGCTCACA 57.226 45.000 20.97 14.32 42.74 3.58
5453 5740 3.377485 ACATTCAGAATGCATGAGCTCAC 59.623 43.478 20.97 8.09 42.52 3.51
5455 5742 5.746307 TTACATTCAGAATGCATGAGCTC 57.254 39.130 21.22 6.82 42.52 4.09
5456 5743 6.073327 CATTACATTCAGAATGCATGAGCT 57.927 37.500 21.22 4.50 42.52 4.09
5473 5760 9.448438 AGAAAACTAGTCAATATGTGCATTACA 57.552 29.630 0.00 0.00 44.87 2.41
5476 5763 9.672673 AGTAGAAAACTAGTCAATATGTGCATT 57.327 29.630 0.00 0.00 36.36 3.56
5477 5764 9.319143 GAGTAGAAAACTAGTCAATATGTGCAT 57.681 33.333 0.00 0.00 39.07 3.96
5480 5767 8.912787 ACGAGTAGAAAACTAGTCAATATGTG 57.087 34.615 0.00 0.00 39.59 3.21
5481 5768 9.924650 AAACGAGTAGAAAACTAGTCAATATGT 57.075 29.630 0.00 0.00 42.51 2.29
5485 5772 9.543783 AGAAAAACGAGTAGAAAACTAGTCAAT 57.456 29.630 0.00 0.00 42.51 2.57
5487 5774 8.192774 TGAGAAAAACGAGTAGAAAACTAGTCA 58.807 33.333 0.00 0.00 42.51 3.41
5488 5775 8.571461 TGAGAAAAACGAGTAGAAAACTAGTC 57.429 34.615 0.00 0.00 42.51 2.59
5489 5776 8.937634 TTGAGAAAAACGAGTAGAAAACTAGT 57.062 30.769 0.00 0.00 44.90 2.57
5493 5780 9.338291 ACTTTTTGAGAAAAACGAGTAGAAAAC 57.662 29.630 0.00 0.00 35.57 2.43
5512 5799 9.801714 GCAACTTGATGATGAATTTACTTTTTG 57.198 29.630 0.00 0.00 0.00 2.44
5517 5804 9.961265 CATATGCAACTTGATGATGAATTTACT 57.039 29.630 0.00 0.00 0.00 2.24
5518 5805 9.188588 CCATATGCAACTTGATGATGAATTTAC 57.811 33.333 0.00 0.00 0.00 2.01
5519 5806 9.134055 TCCATATGCAACTTGATGATGAATTTA 57.866 29.630 0.00 0.00 0.00 1.40
5520 5807 8.014070 TCCATATGCAACTTGATGATGAATTT 57.986 30.769 0.00 0.00 0.00 1.82
5522 5809 7.776618 ATCCATATGCAACTTGATGATGAAT 57.223 32.000 0.00 0.00 0.00 2.57
5523 5810 8.694581 TTATCCATATGCAACTTGATGATGAA 57.305 30.769 0.00 0.00 0.00 2.57
5525 5812 9.353999 CATTTATCCATATGCAACTTGATGATG 57.646 33.333 0.00 0.73 0.00 3.07
5526 5813 9.085645 ACATTTATCCATATGCAACTTGATGAT 57.914 29.630 0.00 0.00 0.00 2.45
5527 5814 8.467963 ACATTTATCCATATGCAACTTGATGA 57.532 30.769 0.00 0.00 0.00 2.92
5610 5964 4.827692 TGTTGGTGTGGTATGTACTGATC 58.172 43.478 0.00 0.00 0.00 2.92
5618 5972 5.879777 TGATATGAACTGTTGGTGTGGTATG 59.120 40.000 0.00 0.00 0.00 2.39
5625 5979 4.036027 GCCAGATGATATGAACTGTTGGTG 59.964 45.833 0.00 0.00 0.00 4.17
5644 5998 1.977056 AGGATGTACATGCATGCCAG 58.023 50.000 26.61 10.19 37.84 4.85
5647 6001 2.775890 AGCTAGGATGTACATGCATGC 58.224 47.619 26.61 25.94 37.45 4.06
5658 6012 3.582208 AGGATTTGAGGCTAGCTAGGATG 59.418 47.826 22.10 0.00 0.00 3.51
5680 6034 3.460825 AGTAAACCTTGGCTGGGATCTA 58.539 45.455 3.54 0.00 0.00 1.98
5683 6037 3.165071 CAAAGTAAACCTTGGCTGGGAT 58.835 45.455 3.54 0.00 32.32 3.85
5736 6090 1.082169 GCTGTCGCATGAACGCAAA 60.082 52.632 0.00 0.00 35.78 3.68
5753 6107 0.040067 GATCCATTTCGCCCGAATGC 60.040 55.000 3.77 0.00 33.79 3.56
5770 6124 1.066573 CACCAACGAGGAAGAGCTGAT 60.067 52.381 0.00 0.00 41.22 2.90
5801 6155 2.258726 GGAAAAAGCGTGCCGGACT 61.259 57.895 5.05 0.00 0.00 3.85
5838 6192 3.248602 CACTACTGAAGAAACAGGTGTGC 59.751 47.826 0.00 0.00 41.59 4.57
5885 6239 1.301716 GCCACGCCAGAGAACTTGA 60.302 57.895 0.00 0.00 0.00 3.02
5919 6273 0.613777 ACGATCTCAAGGGGAACACC 59.386 55.000 0.00 0.00 39.11 4.16
5943 6297 4.018609 CGCTACCTTCGCATCCAG 57.981 61.111 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.