Multiple sequence alignment - TraesCS6A01G140000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G140000 chr6A 100.000 2934 0 0 1 2934 115015318 115012385 0.000000e+00 5419.0
1 TraesCS6A01G140000 chr6A 91.176 68 6 0 2368 2435 607061005 607061072 3.110000e-15 93.5
2 TraesCS6A01G140000 chr6D 95.835 2353 69 10 1 2333 93676824 93679167 0.000000e+00 3775.0
3 TraesCS6A01G140000 chr6D 90.625 96 8 1 2839 2934 93679175 93679269 3.070000e-25 126.0
4 TraesCS6A01G140000 chr6B 95.886 2236 60 11 156 2371 179356587 179354364 0.000000e+00 3591.0
5 TraesCS6A01G140000 chr6B 91.111 405 26 6 2535 2934 179354366 179353967 9.250000e-150 540.0
6 TraesCS6A01G140000 chr6B 94.268 157 8 1 1 156 179357214 179357058 3.780000e-59 239.0
7 TraesCS6A01G140000 chr2B 95.522 737 25 6 700 1432 305762567 305761835 0.000000e+00 1171.0
8 TraesCS6A01G140000 chr2B 91.528 602 38 6 1435 2034 305759449 305758859 0.000000e+00 817.0
9 TraesCS6A01G140000 chr2B 92.623 122 6 2 1135 1256 616454558 616454440 3.890000e-39 172.0
10 TraesCS6A01G140000 chr2D 93.620 627 36 3 1519 2144 19266344 19265721 0.000000e+00 933.0
11 TraesCS6A01G140000 chr2D 93.631 628 34 5 1519 2144 406698160 406697537 0.000000e+00 933.0
12 TraesCS6A01G140000 chr5D 93.471 628 35 5 1519 2144 517971384 517972007 0.000000e+00 928.0
13 TraesCS6A01G140000 chr5D 91.987 599 38 3 1435 2032 423852352 423852941 0.000000e+00 832.0
14 TraesCS6A01G140000 chr7D 93.471 628 33 6 1519 2144 109362733 109362112 0.000000e+00 926.0
15 TraesCS6A01G140000 chr7D 93.142 627 39 3 1519 2144 631742020 631742643 0.000000e+00 917.0
16 TraesCS6A01G140000 chr7D 92.167 600 36 4 1435 2032 521632627 521632037 0.000000e+00 837.0
17 TraesCS6A01G140000 chr7D 97.306 297 8 0 700 996 521642066 521641770 3.370000e-139 505.0
18 TraesCS6A01G140000 chr7D 83.673 147 20 3 2376 2518 20516370 20516224 5.100000e-28 135.0
19 TraesCS6A01G140000 chr7D 87.179 78 10 0 2365 2442 4011453 4011376 4.030000e-14 89.8
20 TraesCS6A01G140000 chr3D 93.648 614 35 4 1519 2130 81390005 81390616 0.000000e+00 915.0
21 TraesCS6A01G140000 chr4B 94.305 597 30 3 1102 1697 535114129 535113536 0.000000e+00 911.0
22 TraesCS6A01G140000 chr4B 91.613 155 10 1 1102 1256 630968987 630969138 8.240000e-51 211.0
23 TraesCS6A01G140000 chr5A 92.834 628 39 6 1519 2144 512779129 512779752 0.000000e+00 905.0
24 TraesCS6A01G140000 chr5A 92.623 122 6 1 1135 1256 539080152 539080270 3.890000e-39 172.0
25 TraesCS6A01G140000 chr1D 92.154 599 37 4 1435 2032 110584313 110584902 0.000000e+00 837.0
26 TraesCS6A01G140000 chr1D 91.176 68 6 0 2368 2435 364730870 364730803 3.110000e-15 93.5
27 TraesCS6A01G140000 chr3A 91.946 596 38 3 1435 2029 726010171 726010757 0.000000e+00 826.0
28 TraesCS6A01G140000 chr3A 97.643 297 7 0 700 996 726003093 726003389 7.250000e-141 510.0
29 TraesCS6A01G140000 chr3A 89.423 104 11 0 2432 2535 136663929 136664032 6.600000e-27 132.0
30 TraesCS6A01G140000 chr7B 91.613 155 9 2 1102 1256 36976839 36976989 8.240000e-51 211.0
31 TraesCS6A01G140000 chr2A 92.623 122 6 1 1135 1256 605007468 605007586 3.890000e-39 172.0
32 TraesCS6A01G140000 chr2A 91.346 104 9 0 2432 2535 210311117 210311014 3.050000e-30 143.0
33 TraesCS6A01G140000 chr1B 93.548 93 5 1 2428 2520 3928018 3928109 1.420000e-28 137.0
34 TraesCS6A01G140000 chr4A 89.423 104 11 0 2432 2535 118583223 118583326 6.600000e-27 132.0
35 TraesCS6A01G140000 chr4A 90.909 66 6 0 2370 2435 608991028 608991093 4.030000e-14 89.8
36 TraesCS6A01G140000 chr4A 90.909 66 6 0 2370 2435 659629712 659629647 4.030000e-14 89.8
37 TraesCS6A01G140000 chr4A 85.542 83 11 1 2364 2446 330507249 330507330 5.210000e-13 86.1
38 TraesCS6A01G140000 chr3B 90.909 99 7 2 2422 2518 765013421 765013519 6.600000e-27 132.0
39 TraesCS6A01G140000 chr3B 88.462 104 12 0 2434 2537 18780545 18780648 3.070000e-25 126.0
40 TraesCS6A01G140000 chrUn 87.273 110 13 1 2417 2526 31934735 31934843 1.100000e-24 124.0
41 TraesCS6A01G140000 chrUn 86.325 117 13 3 2427 2541 85135374 85135489 1.100000e-24 124.0
42 TraesCS6A01G140000 chr7A 87.179 78 10 0 2365 2442 3844843 3844766 4.030000e-14 89.8
43 TraesCS6A01G140000 chr7A 90.909 66 6 0 2370 2435 670376558 670376623 4.030000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G140000 chr6A 115012385 115015318 2933 True 5419.000000 5419 100.000 1 2934 1 chr6A.!!$R1 2933
1 TraesCS6A01G140000 chr6D 93676824 93679269 2445 False 1950.500000 3775 93.230 1 2934 2 chr6D.!!$F1 2933
2 TraesCS6A01G140000 chr6B 179353967 179357214 3247 True 1456.666667 3591 93.755 1 2934 3 chr6B.!!$R1 2933
3 TraesCS6A01G140000 chr2B 305758859 305762567 3708 True 994.000000 1171 93.525 700 2034 2 chr2B.!!$R2 1334
4 TraesCS6A01G140000 chr2D 19265721 19266344 623 True 933.000000 933 93.620 1519 2144 1 chr2D.!!$R1 625
5 TraesCS6A01G140000 chr2D 406697537 406698160 623 True 933.000000 933 93.631 1519 2144 1 chr2D.!!$R2 625
6 TraesCS6A01G140000 chr5D 517971384 517972007 623 False 928.000000 928 93.471 1519 2144 1 chr5D.!!$F2 625
7 TraesCS6A01G140000 chr5D 423852352 423852941 589 False 832.000000 832 91.987 1435 2032 1 chr5D.!!$F1 597
8 TraesCS6A01G140000 chr7D 109362112 109362733 621 True 926.000000 926 93.471 1519 2144 1 chr7D.!!$R3 625
9 TraesCS6A01G140000 chr7D 631742020 631742643 623 False 917.000000 917 93.142 1519 2144 1 chr7D.!!$F1 625
10 TraesCS6A01G140000 chr7D 521632037 521632627 590 True 837.000000 837 92.167 1435 2032 1 chr7D.!!$R4 597
11 TraesCS6A01G140000 chr3D 81390005 81390616 611 False 915.000000 915 93.648 1519 2130 1 chr3D.!!$F1 611
12 TraesCS6A01G140000 chr4B 535113536 535114129 593 True 911.000000 911 94.305 1102 1697 1 chr4B.!!$R1 595
13 TraesCS6A01G140000 chr5A 512779129 512779752 623 False 905.000000 905 92.834 1519 2144 1 chr5A.!!$F1 625
14 TraesCS6A01G140000 chr1D 110584313 110584902 589 False 837.000000 837 92.154 1435 2032 1 chr1D.!!$F1 597
15 TraesCS6A01G140000 chr3A 726010171 726010757 586 False 826.000000 826 91.946 1435 2029 1 chr3A.!!$F3 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
314 787 1.673168 GGCCTGAAATCCTGCAGTAG 58.327 55.0 13.81 0.0 0.00 2.57 F
1347 1824 2.679355 TTGAAAACCTGTTCATCGCG 57.321 45.0 0.00 0.0 37.36 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1626 4487 2.393271 TTGGTGCCTGTTTTTGTTGG 57.607 45.0 0.00 0.00 0.0 3.77 R
2829 5718 0.179156 AGTTGCACATTAGCGCATGC 60.179 50.0 11.47 7.91 38.1 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
196 669 7.212976 AGTCAAATGGTAGCAGATACATACTG 58.787 38.462 0.00 0.00 35.96 2.74
221 694 8.098286 TGCACTTAAGTAGGAAGTTTGCTAATA 58.902 33.333 8.04 0.00 34.90 0.98
314 787 1.673168 GGCCTGAAATCCTGCAGTAG 58.327 55.000 13.81 0.00 0.00 2.57
392 865 5.940192 AATTCGCAAACATCACTCACTAA 57.060 34.783 0.00 0.00 0.00 2.24
544 1017 9.846248 AAATTTGTTGAAGAATGATGCTAGTAC 57.154 29.630 0.00 0.00 0.00 2.73
660 1133 6.194967 CCAATACCTGAAAAGGGTAAAGGAT 58.805 40.000 0.00 0.00 41.83 3.24
981 1455 9.628500 AATATTACTTCATAAACCCTCACCTTC 57.372 33.333 0.00 0.00 0.00 3.46
1226 1702 6.240549 ACCATAGAAGGTGGAATCAACTAG 57.759 41.667 0.00 0.00 40.66 2.57
1227 1703 5.726793 ACCATAGAAGGTGGAATCAACTAGT 59.273 40.000 0.00 0.00 40.66 2.57
1228 1704 6.901300 ACCATAGAAGGTGGAATCAACTAGTA 59.099 38.462 0.00 0.00 40.66 1.82
1347 1824 2.679355 TTGAAAACCTGTTCATCGCG 57.321 45.000 0.00 0.00 37.36 5.87
1449 4310 6.896860 TGGACCATTTACAGATCCAAATTCAT 59.103 34.615 0.00 0.00 36.51 2.57
1454 4315 9.656040 CCATTTACAGATCCAAATTCATTCAAA 57.344 29.630 0.00 0.00 0.00 2.69
1626 4487 5.086104 TCAGAGATACACACTAAAAGGGC 57.914 43.478 0.00 0.00 0.00 5.19
1638 4500 4.570369 CACTAAAAGGGCCAACAAAAACAG 59.430 41.667 6.18 0.00 0.00 3.16
1771 4635 3.728385 AGAGTAAGCCCAATTTGAGCT 57.272 42.857 0.00 0.00 38.88 4.09
1777 4643 4.996788 AAGCCCAATTTGAGCTATTCAG 57.003 40.909 5.79 0.00 37.07 3.02
1786 4652 7.424001 CAATTTGAGCTATTCAGGAGGAAATC 58.576 38.462 0.00 0.00 39.39 2.17
1934 4802 4.221422 GGAGCGCGCCCATGTAGA 62.221 66.667 30.33 0.00 0.00 2.59
2380 5265 8.147244 ACAATTTTATACTGTACTCCCTCTGT 57.853 34.615 0.00 0.00 0.00 3.41
2381 5266 9.263446 ACAATTTTATACTGTACTCCCTCTGTA 57.737 33.333 0.00 0.00 0.00 2.74
2385 5270 8.890410 TTTATACTGTACTCCCTCTGTAAACT 57.110 34.615 0.00 0.00 0.00 2.66
2386 5271 9.979897 TTTATACTGTACTCCCTCTGTAAACTA 57.020 33.333 0.00 0.00 0.00 2.24
2387 5272 9.979897 TTATACTGTACTCCCTCTGTAAACTAA 57.020 33.333 0.00 0.00 0.00 2.24
2491 5376 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
2492 5377 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
2493 5378 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
2494 5379 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
2495 5380 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
2496 5381 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
2497 5382 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
2512 5397 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2513 5398 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2514 5399 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2515 5400 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2516 5401 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2527 5412 8.465201 AGTTTACAGAGGGAGTATTAGTTTACG 58.535 37.037 0.00 0.00 0.00 3.18
2528 5413 5.848833 ACAGAGGGAGTATTAGTTTACGG 57.151 43.478 0.00 0.00 0.00 4.02
2529 5414 5.513233 ACAGAGGGAGTATTAGTTTACGGA 58.487 41.667 0.00 0.00 0.00 4.69
2530 5415 5.593502 ACAGAGGGAGTATTAGTTTACGGAG 59.406 44.000 0.00 0.00 0.00 4.63
2531 5416 5.826737 CAGAGGGAGTATTAGTTTACGGAGA 59.173 44.000 0.00 0.00 0.00 3.71
2532 5417 6.016943 CAGAGGGAGTATTAGTTTACGGAGAG 60.017 46.154 0.00 0.00 0.00 3.20
2533 5418 6.011122 AGGGAGTATTAGTTTACGGAGAGA 57.989 41.667 0.00 0.00 0.00 3.10
2534 5419 6.063404 AGGGAGTATTAGTTTACGGAGAGAG 58.937 44.000 0.00 0.00 0.00 3.20
2535 5420 5.827267 GGGAGTATTAGTTTACGGAGAGAGT 59.173 44.000 0.00 0.00 0.00 3.24
2559 5444 9.127277 AGTATGTAACAAAAACAGTACCATTGT 57.873 29.630 0.00 0.00 35.86 2.71
2643 5528 9.638239 TTTCAATTAAATCCAATAGTTGAGCAC 57.362 29.630 0.00 0.00 32.73 4.40
2652 5541 5.935206 TCCAATAGTTGAGCACAAAATACGA 59.065 36.000 0.00 0.00 37.77 3.43
2654 5543 6.742718 CCAATAGTTGAGCACAAAATACGAAG 59.257 38.462 0.00 0.00 37.77 3.79
2708 5597 5.606505 GGAAAGTCCAGTCCTATCATTCTC 58.393 45.833 0.00 0.00 36.28 2.87
2715 5604 5.907662 TCCAGTCCTATCATTCTCTCCATTT 59.092 40.000 0.00 0.00 0.00 2.32
2716 5605 5.996513 CCAGTCCTATCATTCTCTCCATTTG 59.003 44.000 0.00 0.00 0.00 2.32
2719 5608 5.824624 GTCCTATCATTCTCTCCATTTGCAA 59.175 40.000 0.00 0.00 0.00 4.08
2725 5614 7.092137 TCATTCTCTCCATTTGCAATTGTAG 57.908 36.000 17.53 12.58 0.00 2.74
2780 5669 5.547465 TGTCGTTACAAATGGTCTCAAGAT 58.453 37.500 0.00 0.00 30.91 2.40
2803 5692 9.574516 AGATTCTACCAAAAGCTAAAGAAGAAA 57.425 29.630 0.00 0.00 0.00 2.52
2884 5773 3.046390 CGCTCAATCCTATCGAAGTCAC 58.954 50.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 7.275999 CGATTAAGGTAAAGAGAGAACTTGGAC 59.724 40.741 0.00 0.00 0.00 4.02
7 8 7.039223 ACGATTAAGGTAAAGAGAGAACTTGGA 60.039 37.037 0.00 0.00 0.00 3.53
196 669 6.796705 TTAGCAAACTTCCTACTTAAGTGC 57.203 37.500 18.56 9.34 37.26 4.40
221 694 5.556915 TCGATATTGGTTTGTTGGTCTTCT 58.443 37.500 0.00 0.00 0.00 2.85
367 840 6.500684 AGTGAGTGATGTTTGCGAATTAAT 57.499 33.333 0.00 0.00 0.00 1.40
392 865 9.350951 ACTTTTGTAGATAAGTTTACTTTGCCT 57.649 29.630 0.00 0.00 37.40 4.75
514 987 8.665643 AGCATCATTCTTCAACAAATTTGAAA 57.334 26.923 24.64 13.50 37.89 2.69
544 1017 4.148348 CACCAAGACTTAAACGAGAAGACG 59.852 45.833 0.00 0.00 39.31 4.18
860 1333 7.011763 CCTTGTCATGACATCCTGTACTATTTG 59.988 40.741 28.32 0.70 41.52 2.32
862 1335 6.384015 TCCTTGTCATGACATCCTGTACTATT 59.616 38.462 28.32 0.00 41.52 1.73
959 1433 5.484715 CGAAGGTGAGGGTTTATGAAGTAA 58.515 41.667 0.00 0.00 0.00 2.24
981 1455 3.426191 CCATCAAAGATTTGTGTTGTGCG 59.574 43.478 5.29 0.00 39.18 5.34
1226 1702 9.292846 ACAACTTCAACCGAACTTTTATTTTAC 57.707 29.630 0.00 0.00 0.00 2.01
1227 1703 9.505995 GACAACTTCAACCGAACTTTTATTTTA 57.494 29.630 0.00 0.00 0.00 1.52
1228 1704 8.030106 TGACAACTTCAACCGAACTTTTATTTT 58.970 29.630 0.00 0.00 0.00 1.82
1240 1716 4.868450 TGTAGTTTGACAACTTCAACCG 57.132 40.909 0.00 0.00 44.28 4.44
1347 1824 5.789643 AAATAATGACCCATGGCATGTAC 57.210 39.130 24.80 15.58 0.00 2.90
1471 4332 6.777091 TGCATGCTGTATGGGATAAATAGTTT 59.223 34.615 20.33 0.00 37.26 2.66
1626 4487 2.393271 TTGGTGCCTGTTTTTGTTGG 57.607 45.000 0.00 0.00 0.00 3.77
1638 4500 4.605640 AATATGTATGCCAATTGGTGCC 57.394 40.909 25.19 9.83 37.57 5.01
1771 4635 4.901849 AGACGATGGATTTCCTCCTGAATA 59.098 41.667 0.00 0.00 45.21 1.75
1777 4643 3.828875 AAGAGACGATGGATTTCCTCC 57.171 47.619 0.00 0.00 45.19 4.30
1786 4652 6.545504 TCAGAAAAAGAAAAGAGACGATGG 57.454 37.500 0.00 0.00 0.00 3.51
1878 4746 3.838271 GGATGCTCTGGTCGCCGA 61.838 66.667 0.00 0.00 0.00 5.54
2465 5350 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
2466 5351 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
2467 5352 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
2468 5353 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
2469 5354 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
2470 5355 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
2471 5356 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
2486 5371 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2487 5372 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2488 5373 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2489 5374 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2490 5375 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2501 5386 8.465201 CGTAAACTAATACTCCCTCTGTAAACT 58.535 37.037 0.00 0.00 0.00 2.66
2502 5387 7.704047 CCGTAAACTAATACTCCCTCTGTAAAC 59.296 40.741 0.00 0.00 0.00 2.01
2503 5388 7.615365 TCCGTAAACTAATACTCCCTCTGTAAA 59.385 37.037 0.00 0.00 0.00 2.01
2504 5389 7.118723 TCCGTAAACTAATACTCCCTCTGTAA 58.881 38.462 0.00 0.00 0.00 2.41
2505 5390 6.662755 TCCGTAAACTAATACTCCCTCTGTA 58.337 40.000 0.00 0.00 0.00 2.74
2506 5391 5.513233 TCCGTAAACTAATACTCCCTCTGT 58.487 41.667 0.00 0.00 0.00 3.41
2507 5392 5.826737 TCTCCGTAAACTAATACTCCCTCTG 59.173 44.000 0.00 0.00 0.00 3.35
2508 5393 6.011122 TCTCCGTAAACTAATACTCCCTCT 57.989 41.667 0.00 0.00 0.00 3.69
2509 5394 6.060788 TCTCTCCGTAAACTAATACTCCCTC 58.939 44.000 0.00 0.00 0.00 4.30
2510 5395 6.011122 TCTCTCCGTAAACTAATACTCCCT 57.989 41.667 0.00 0.00 0.00 4.20
2511 5396 5.827267 ACTCTCTCCGTAAACTAATACTCCC 59.173 44.000 0.00 0.00 0.00 4.30
2512 5397 6.940831 ACTCTCTCCGTAAACTAATACTCC 57.059 41.667 0.00 0.00 0.00 3.85
2513 5398 9.054922 ACATACTCTCTCCGTAAACTAATACTC 57.945 37.037 0.00 0.00 0.00 2.59
2514 5399 8.977267 ACATACTCTCTCCGTAAACTAATACT 57.023 34.615 0.00 0.00 0.00 2.12
2517 5402 9.182214 TGTTACATACTCTCTCCGTAAACTAAT 57.818 33.333 0.00 0.00 0.00 1.73
2518 5403 8.565896 TGTTACATACTCTCTCCGTAAACTAA 57.434 34.615 0.00 0.00 0.00 2.24
2519 5404 8.565896 TTGTTACATACTCTCTCCGTAAACTA 57.434 34.615 0.00 0.00 0.00 2.24
2520 5405 7.458409 TTGTTACATACTCTCTCCGTAAACT 57.542 36.000 0.00 0.00 0.00 2.66
2521 5406 8.524870 TTTTGTTACATACTCTCTCCGTAAAC 57.475 34.615 0.00 0.00 0.00 2.01
2522 5407 8.981647 GTTTTTGTTACATACTCTCTCCGTAAA 58.018 33.333 0.00 0.00 0.00 2.01
2523 5408 8.143193 TGTTTTTGTTACATACTCTCTCCGTAA 58.857 33.333 0.00 0.00 0.00 3.18
2524 5409 7.660112 TGTTTTTGTTACATACTCTCTCCGTA 58.340 34.615 0.00 0.00 0.00 4.02
2525 5410 6.518493 TGTTTTTGTTACATACTCTCTCCGT 58.482 36.000 0.00 0.00 0.00 4.69
2526 5411 6.645415 ACTGTTTTTGTTACATACTCTCTCCG 59.355 38.462 0.00 0.00 0.00 4.63
2527 5412 7.964604 ACTGTTTTTGTTACATACTCTCTCC 57.035 36.000 0.00 0.00 0.00 3.71
2528 5413 8.923683 GGTACTGTTTTTGTTACATACTCTCTC 58.076 37.037 0.00 0.00 0.00 3.20
2529 5414 8.426489 TGGTACTGTTTTTGTTACATACTCTCT 58.574 33.333 0.00 0.00 0.00 3.10
2530 5415 8.597662 TGGTACTGTTTTTGTTACATACTCTC 57.402 34.615 0.00 0.00 0.00 3.20
2531 5416 9.569122 AATGGTACTGTTTTTGTTACATACTCT 57.431 29.630 0.00 0.00 0.00 3.24
2532 5417 9.607285 CAATGGTACTGTTTTTGTTACATACTC 57.393 33.333 0.00 0.00 0.00 2.59
2533 5418 9.127277 ACAATGGTACTGTTTTTGTTACATACT 57.873 29.630 0.00 0.00 0.00 2.12
2630 5515 7.298122 ACTTCGTATTTTGTGCTCAACTATTG 58.702 34.615 0.00 0.00 32.93 1.90
2633 5518 8.542497 AATACTTCGTATTTTGTGCTCAACTA 57.458 30.769 0.00 0.00 35.50 2.24
2652 5541 8.520351 CGGGATTGGAAGTAAAGAAAAATACTT 58.480 33.333 0.00 0.00 43.22 2.24
2654 5543 7.094075 ACCGGGATTGGAAGTAAAGAAAAATAC 60.094 37.037 6.32 0.00 0.00 1.89
2708 5597 7.481275 AAACAAACTACAATTGCAAATGGAG 57.519 32.000 22.75 22.75 33.52 3.86
2715 5604 6.269315 ACATCGAAAACAAACTACAATTGCA 58.731 32.000 5.05 0.00 0.00 4.08
2716 5605 6.747659 ACATCGAAAACAAACTACAATTGC 57.252 33.333 5.05 0.00 0.00 3.56
2719 5608 8.788806 TGGATAACATCGAAAACAAACTACAAT 58.211 29.630 0.00 0.00 0.00 2.71
2755 5644 5.995282 TCTTGAGACCATTTGTAACGACAAT 59.005 36.000 0.00 0.00 44.96 2.71
2756 5645 5.361427 TCTTGAGACCATTTGTAACGACAA 58.639 37.500 0.00 0.00 43.94 3.18
2804 5693 7.117667 GCGTTTTCCTATTGGATTGTGATTTTT 59.882 33.333 0.00 0.00 42.81 1.94
2829 5718 0.179156 AGTTGCACATTAGCGCATGC 60.179 50.000 11.47 7.91 38.10 4.06
2830 5719 1.541475 CAGTTGCACATTAGCGCATG 58.459 50.000 11.47 8.36 38.10 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.