Multiple sequence alignment - TraesCS6A01G139900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G139900 chr6A 100.000 4560 0 0 1 4560 115012092 115016651 0.000000e+00 8421.0
1 TraesCS6A01G139900 chr6A 91.176 68 6 0 793 860 607061072 607061005 4.860000e-15 93.5
2 TraesCS6A01G139900 chr6D 95.113 3192 116 19 895 4062 93679167 93675992 0.000000e+00 4994.0
3 TraesCS6A01G139900 chr6D 87.755 392 40 6 1 389 93679561 93679175 6.960000e-123 451.0
4 TraesCS6A01G139900 chr6D 90.203 296 25 4 3768 4062 93657814 93657522 2.570000e-102 383.0
5 TraesCS6A01G139900 chr6D 92.063 63 4 1 4109 4170 93657530 93657468 2.260000e-13 87.9
6 TraesCS6A01G139900 chr6D 92.063 63 4 1 4109 4170 93676000 93675938 2.260000e-13 87.9
7 TraesCS6A01G139900 chr6B 95.886 2236 60 11 857 3072 179354364 179356587 0.000000e+00 3591.0
8 TraesCS6A01G139900 chr6B 94.754 896 38 7 3072 3966 179357058 179357945 0.000000e+00 1386.0
9 TraesCS6A01G139900 chr6B 91.702 699 46 8 1 693 179353674 179354366 0.000000e+00 959.0
10 TraesCS6A01G139900 chr6B 92.500 80 6 0 4091 4170 179357994 179358073 1.040000e-21 115.0
11 TraesCS6A01G139900 chr2B 95.522 737 25 6 1796 2528 305761835 305762567 0.000000e+00 1171.0
12 TraesCS6A01G139900 chr2B 91.528 602 38 6 1194 1793 305758859 305759449 0.000000e+00 817.0
13 TraesCS6A01G139900 chr2B 92.623 122 6 2 1972 2093 616454440 616454558 6.070000e-39 172.0
14 TraesCS6A01G139900 chr2D 93.620 627 36 3 1084 1709 19265721 19266344 0.000000e+00 933.0
15 TraesCS6A01G139900 chr2D 93.631 628 34 5 1084 1709 406697537 406698160 0.000000e+00 933.0
16 TraesCS6A01G139900 chr5D 93.471 628 35 5 1084 1709 517972007 517971384 0.000000e+00 928.0
17 TraesCS6A01G139900 chr5D 91.987 599 38 3 1196 1793 423852941 423852352 0.000000e+00 832.0
18 TraesCS6A01G139900 chr7D 93.471 628 33 6 1084 1709 109362112 109362733 0.000000e+00 926.0
19 TraesCS6A01G139900 chr7D 93.142 627 39 3 1084 1709 631742643 631742020 0.000000e+00 917.0
20 TraesCS6A01G139900 chr7D 92.167 600 36 4 1196 1793 521632037 521632627 0.000000e+00 837.0
21 TraesCS6A01G139900 chr7D 97.306 297 8 0 2232 2528 521641770 521642066 5.260000e-139 505.0
22 TraesCS6A01G139900 chr7D 93.291 313 21 0 4246 4558 560252739 560252427 3.210000e-126 462.0
23 TraesCS6A01G139900 chr7D 83.673 147 20 3 710 852 20516224 20516370 7.960000e-28 135.0
24 TraesCS6A01G139900 chr7D 87.179 78 10 0 786 863 4011376 4011453 6.280000e-14 89.8
25 TraesCS6A01G139900 chr3D 93.648 614 35 4 1098 1709 81390616 81390005 0.000000e+00 915.0
26 TraesCS6A01G139900 chr4B 94.305 597 30 3 1531 2126 535113536 535114129 0.000000e+00 911.0
27 TraesCS6A01G139900 chr4B 91.613 155 10 1 1972 2126 630969138 630968987 1.290000e-50 211.0
28 TraesCS6A01G139900 chr5A 92.834 628 39 6 1084 1709 512779752 512779129 0.000000e+00 905.0
29 TraesCS6A01G139900 chr5A 92.623 122 6 1 1972 2093 539080270 539080152 6.070000e-39 172.0
30 TraesCS6A01G139900 chr1D 92.154 599 37 4 1196 1793 110584902 110584313 0.000000e+00 837.0
31 TraesCS6A01G139900 chr1D 94.268 314 17 1 4246 4558 451134800 451134487 3.190000e-131 479.0
32 TraesCS6A01G139900 chr1D 93.987 316 18 1 4243 4558 403941193 403941507 1.150000e-130 477.0
33 TraesCS6A01G139900 chr1D 93.333 315 21 0 4244 4558 62437709 62437395 2.480000e-127 466.0
34 TraesCS6A01G139900 chr1D 91.176 68 6 0 793 860 364730803 364730870 4.860000e-15 93.5
35 TraesCS6A01G139900 chr3A 91.946 596 38 3 1199 1793 726010757 726010171 0.000000e+00 826.0
36 TraesCS6A01G139900 chr3A 97.643 297 7 0 2232 2528 726003389 726003093 1.130000e-140 510.0
37 TraesCS6A01G139900 chr3A 94.393 321 16 2 4240 4558 749476746 749477066 4.100000e-135 492.0
38 TraesCS6A01G139900 chr3A 89.423 104 11 0 693 796 136664032 136663929 1.030000e-26 132.0
39 TraesCS6A01G139900 chr4D 93.375 317 20 1 4243 4558 69137025 69136709 6.910000e-128 468.0
40 TraesCS6A01G139900 chr4A 93.333 315 20 1 4244 4558 673076958 673077271 8.940000e-127 464.0
41 TraesCS6A01G139900 chr4A 89.423 104 11 0 693 796 118583326 118583223 1.030000e-26 132.0
42 TraesCS6A01G139900 chr4A 90.909 66 6 0 793 858 608991093 608991028 6.280000e-14 89.8
43 TraesCS6A01G139900 chr4A 90.909 66 6 0 793 858 659629647 659629712 6.280000e-14 89.8
44 TraesCS6A01G139900 chr4A 85.542 83 11 1 782 864 330507330 330507249 8.130000e-13 86.1
45 TraesCS6A01G139900 chr7B 93.016 315 22 0 4244 4558 424050551 424050865 1.160000e-125 460.0
46 TraesCS6A01G139900 chr7B 91.613 155 9 2 1972 2126 36976989 36976839 1.290000e-50 211.0
47 TraesCS6A01G139900 chr3B 92.331 326 22 3 4235 4558 821155402 821155726 1.160000e-125 460.0
48 TraesCS6A01G139900 chr3B 90.909 99 7 2 710 806 765013519 765013421 1.030000e-26 132.0
49 TraesCS6A01G139900 chr3B 88.462 104 12 0 691 794 18780648 18780545 4.790000e-25 126.0
50 TraesCS6A01G139900 chr2A 92.623 122 6 1 1972 2093 605007586 605007468 6.070000e-39 172.0
51 TraesCS6A01G139900 chr2A 91.346 104 9 0 693 796 210311014 210311117 4.760000e-30 143.0
52 TraesCS6A01G139900 chr1B 93.548 93 5 1 708 800 3928109 3928018 2.210000e-28 137.0
53 TraesCS6A01G139900 chrUn 87.273 110 13 1 702 811 31934843 31934735 1.720000e-24 124.0
54 TraesCS6A01G139900 chrUn 86.325 117 13 3 687 801 85135489 85135374 1.720000e-24 124.0
55 TraesCS6A01G139900 chr7A 87.179 78 10 0 786 863 3844766 3844843 6.280000e-14 89.8
56 TraesCS6A01G139900 chr7A 90.909 66 6 0 793 858 670376623 670376558 6.280000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G139900 chr6A 115012092 115016651 4559 False 8421.00 8421 100.000000 1 4560 1 chr6A.!!$F1 4559
1 TraesCS6A01G139900 chr6D 93675938 93679561 3623 True 1844.30 4994 91.643667 1 4170 3 chr6D.!!$R2 4169
2 TraesCS6A01G139900 chr6B 179353674 179358073 4399 False 1512.75 3591 93.710500 1 4170 4 chr6B.!!$F1 4169
3 TraesCS6A01G139900 chr2B 305758859 305762567 3708 False 994.00 1171 93.525000 1194 2528 2 chr2B.!!$F2 1334
4 TraesCS6A01G139900 chr2D 19265721 19266344 623 False 933.00 933 93.620000 1084 1709 1 chr2D.!!$F1 625
5 TraesCS6A01G139900 chr2D 406697537 406698160 623 False 933.00 933 93.631000 1084 1709 1 chr2D.!!$F2 625
6 TraesCS6A01G139900 chr5D 517971384 517972007 623 True 928.00 928 93.471000 1084 1709 1 chr5D.!!$R2 625
7 TraesCS6A01G139900 chr5D 423852352 423852941 589 True 832.00 832 91.987000 1196 1793 1 chr5D.!!$R1 597
8 TraesCS6A01G139900 chr7D 109362112 109362733 621 False 926.00 926 93.471000 1084 1709 1 chr7D.!!$F3 625
9 TraesCS6A01G139900 chr7D 631742020 631742643 623 True 917.00 917 93.142000 1084 1709 1 chr7D.!!$R2 625
10 TraesCS6A01G139900 chr7D 521632037 521632627 590 False 837.00 837 92.167000 1196 1793 1 chr7D.!!$F4 597
11 TraesCS6A01G139900 chr3D 81390005 81390616 611 True 915.00 915 93.648000 1098 1709 1 chr3D.!!$R1 611
12 TraesCS6A01G139900 chr4B 535113536 535114129 593 False 911.00 911 94.305000 1531 2126 1 chr4B.!!$F1 595
13 TraesCS6A01G139900 chr5A 512779129 512779752 623 True 905.00 905 92.834000 1084 1709 1 chr5A.!!$R1 625
14 TraesCS6A01G139900 chr1D 110584313 110584902 589 True 837.00 837 92.154000 1196 1793 1 chr1D.!!$R2 597
15 TraesCS6A01G139900 chr3A 726010171 726010757 586 True 826.00 826 91.946000 1199 1793 1 chr3A.!!$R3 594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
397 400 0.179156 AGTTGCACATTAGCGCATGC 60.179 50.000 11.47 7.91 38.10 4.06 F
1600 1631 2.393271 TTGGTGCCTGTTTTTGTTGG 57.607 45.000 0.00 0.00 0.00 3.77 F
2245 4663 3.426191 CCATCAAAGATTTGTGTTGTGCG 59.574 43.478 5.29 0.00 39.18 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1879 4294 2.679355 TTGAAAACCTGTTCATCGCG 57.321 45.0 0.00 0.00 37.36 5.87 R
2912 5331 1.673168 GGCCTGAAATCCTGCAGTAG 58.327 55.0 13.81 0.00 0.00 2.57 R
3754 6648 0.951040 GGATCCCGTCGATGGCATTC 60.951 60.0 18.81 3.72 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 5.113446 ACTTCTGAGATCAATGCATCCTT 57.887 39.130 0.00 0.00 0.00 3.36
195 197 5.960811 TGGCTATCCCAAATTTTATCCACAA 59.039 36.000 0.00 0.00 41.82 3.33
287 290 3.181469 CGAGGGGAATCGATCTGGTAAAA 60.181 47.826 0.00 0.00 45.56 1.52
396 399 1.541475 CAGTTGCACATTAGCGCATG 58.459 50.000 11.47 8.36 38.10 4.06
397 400 0.179156 AGTTGCACATTAGCGCATGC 60.179 50.000 11.47 7.91 38.10 4.06
422 425 7.117667 GCGTTTTCCTATTGGATTGTGATTTTT 59.882 33.333 0.00 0.00 42.81 1.94
470 473 5.361427 TCTTGAGACCATTTGTAACGACAA 58.639 37.500 0.00 0.00 43.94 3.18
471 474 5.995282 TCTTGAGACCATTTGTAACGACAAT 59.005 36.000 0.00 0.00 44.96 2.71
507 510 8.788806 TGGATAACATCGAAAACAAACTACAAT 58.211 29.630 0.00 0.00 0.00 2.71
510 513 6.747659 ACATCGAAAACAAACTACAATTGC 57.252 33.333 5.05 0.00 0.00 3.56
511 514 6.269315 ACATCGAAAACAAACTACAATTGCA 58.731 32.000 5.05 0.00 0.00 4.08
518 521 7.481275 AAACAAACTACAATTGCAAATGGAG 57.519 32.000 22.75 22.75 33.52 3.86
572 575 7.094075 ACCGGGATTGGAAGTAAAGAAAAATAC 60.094 37.037 6.32 0.00 0.00 1.89
574 577 8.520351 CGGGATTGGAAGTAAAGAAAAATACTT 58.480 33.333 0.00 0.00 43.22 2.24
595 598 7.435068 ACTTCGTATTTTGTGCTCAACTATT 57.565 32.000 0.00 0.00 32.93 1.73
596 599 7.298122 ACTTCGTATTTTGTGCTCAACTATTG 58.702 34.615 0.00 0.00 32.93 1.90
693 701 9.127277 ACAATGGTACTGTTTTTGTTACATACT 57.873 29.630 0.00 0.00 0.00 2.12
694 702 9.607285 CAATGGTACTGTTTTTGTTACATACTC 57.393 33.333 0.00 0.00 0.00 2.59
695 703 9.569122 AATGGTACTGTTTTTGTTACATACTCT 57.431 29.630 0.00 0.00 0.00 3.24
696 704 8.597662 TGGTACTGTTTTTGTTACATACTCTC 57.402 34.615 0.00 0.00 0.00 3.20
697 705 8.426489 TGGTACTGTTTTTGTTACATACTCTCT 58.574 33.333 0.00 0.00 0.00 3.10
698 706 8.923683 GGTACTGTTTTTGTTACATACTCTCTC 58.076 37.037 0.00 0.00 0.00 3.20
699 707 7.964604 ACTGTTTTTGTTACATACTCTCTCC 57.035 36.000 0.00 0.00 0.00 3.71
700 708 6.645415 ACTGTTTTTGTTACATACTCTCTCCG 59.355 38.462 0.00 0.00 0.00 4.63
701 709 6.518493 TGTTTTTGTTACATACTCTCTCCGT 58.482 36.000 0.00 0.00 0.00 4.69
702 710 7.660112 TGTTTTTGTTACATACTCTCTCCGTA 58.340 34.615 0.00 0.00 0.00 4.02
703 711 8.143193 TGTTTTTGTTACATACTCTCTCCGTAA 58.857 33.333 0.00 0.00 0.00 3.18
704 712 8.981647 GTTTTTGTTACATACTCTCTCCGTAAA 58.018 33.333 0.00 0.00 0.00 2.01
705 713 8.524870 TTTTGTTACATACTCTCTCCGTAAAC 57.475 34.615 0.00 0.00 0.00 2.01
706 714 7.458409 TTGTTACATACTCTCTCCGTAAACT 57.542 36.000 0.00 0.00 0.00 2.66
707 715 8.565896 TTGTTACATACTCTCTCCGTAAACTA 57.434 34.615 0.00 0.00 0.00 2.24
708 716 8.565896 TGTTACATACTCTCTCCGTAAACTAA 57.434 34.615 0.00 0.00 0.00 2.24
709 717 9.182214 TGTTACATACTCTCTCCGTAAACTAAT 57.818 33.333 0.00 0.00 0.00 1.73
712 720 8.977267 ACATACTCTCTCCGTAAACTAATACT 57.023 34.615 0.00 0.00 0.00 2.12
713 721 9.054922 ACATACTCTCTCCGTAAACTAATACTC 57.945 37.037 0.00 0.00 0.00 2.59
714 722 6.940831 ACTCTCTCCGTAAACTAATACTCC 57.059 41.667 0.00 0.00 0.00 3.85
715 723 5.827267 ACTCTCTCCGTAAACTAATACTCCC 59.173 44.000 0.00 0.00 0.00 4.30
716 724 6.011122 TCTCTCCGTAAACTAATACTCCCT 57.989 41.667 0.00 0.00 0.00 4.20
717 725 6.060788 TCTCTCCGTAAACTAATACTCCCTC 58.939 44.000 0.00 0.00 0.00 4.30
718 726 6.011122 TCTCCGTAAACTAATACTCCCTCT 57.989 41.667 0.00 0.00 0.00 3.69
719 727 5.826737 TCTCCGTAAACTAATACTCCCTCTG 59.173 44.000 0.00 0.00 0.00 3.35
720 728 5.513233 TCCGTAAACTAATACTCCCTCTGT 58.487 41.667 0.00 0.00 0.00 3.41
721 729 6.662755 TCCGTAAACTAATACTCCCTCTGTA 58.337 40.000 0.00 0.00 0.00 2.74
722 730 7.118723 TCCGTAAACTAATACTCCCTCTGTAA 58.881 38.462 0.00 0.00 0.00 2.41
723 731 7.615365 TCCGTAAACTAATACTCCCTCTGTAAA 59.385 37.037 0.00 0.00 0.00 2.01
724 732 7.704047 CCGTAAACTAATACTCCCTCTGTAAAC 59.296 40.741 0.00 0.00 0.00 2.01
725 733 8.465201 CGTAAACTAATACTCCCTCTGTAAACT 58.535 37.037 0.00 0.00 0.00 2.66
736 744 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
737 745 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
738 746 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
739 747 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
740 748 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
755 763 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
756 764 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
757 765 8.503458 AGAGCGTTTAGATCACTACTTTAGTA 57.497 34.615 0.00 0.00 37.82 1.82
758 766 9.122779 AGAGCGTTTAGATCACTACTTTAGTAT 57.877 33.333 0.00 0.00 37.82 2.12
759 767 9.733219 GAGCGTTTAGATCACTACTTTAGTATT 57.267 33.333 0.00 0.00 37.23 1.89
760 768 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
761 769 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
1348 1375 3.838271 GGATGCTCTGGTCGCCGA 61.838 66.667 0.00 0.00 0.00 5.54
1440 1468 6.545504 TCAGAAAAAGAAAAGAGACGATGG 57.454 37.500 0.00 0.00 0.00 3.51
1449 1477 3.828875 AAGAGACGATGGATTTCCTCC 57.171 47.619 0.00 0.00 45.19 4.30
1455 1484 4.901849 AGACGATGGATTTCCTCCTGAATA 59.098 41.667 0.00 0.00 45.21 1.75
1588 1619 4.605640 AATATGTATGCCAATTGGTGCC 57.394 40.909 25.19 9.83 37.57 5.01
1600 1631 2.393271 TTGGTGCCTGTTTTTGTTGG 57.607 45.000 0.00 0.00 0.00 3.77
1755 1786 6.777091 TGCATGCTGTATGGGATAAATAGTTT 59.223 34.615 20.33 0.00 37.26 2.66
1879 4294 5.789643 AAATAATGACCCATGGCATGTAC 57.210 39.130 24.80 15.58 0.00 2.90
1986 4402 4.868450 TGTAGTTTGACAACTTCAACCG 57.132 40.909 0.00 0.00 44.28 4.44
2000 4416 9.292846 ACAACTTCAACCGAACTTTTATTTTAC 57.707 29.630 0.00 0.00 0.00 2.01
2001 4417 9.511144 CAACTTCAACCGAACTTTTATTTTACT 57.489 29.630 0.00 0.00 0.00 2.24
2245 4663 3.426191 CCATCAAAGATTTGTGTTGTGCG 59.574 43.478 5.29 0.00 39.18 5.34
2267 4685 5.484715 CGAAGGTGAGGGTTTATGAAGTAA 58.515 41.667 0.00 0.00 0.00 2.24
2364 4783 6.384015 TCCTTGTCATGACATCCTGTACTATT 59.616 38.462 28.32 0.00 41.52 1.73
2366 4785 7.011763 CCTTGTCATGACATCCTGTACTATTTG 59.988 40.741 28.32 0.70 41.52 2.32
2682 5101 4.148348 CACCAAGACTTAAACGAGAAGACG 59.852 45.833 0.00 0.00 39.31 4.18
2712 5131 8.665643 AGCATCATTCTTCAACAAATTTGAAA 57.334 26.923 24.64 13.50 37.89 2.69
2834 5253 9.350951 ACTTTTGTAGATAAGTTTACTTTGCCT 57.649 29.630 0.00 0.00 37.40 4.75
2859 5278 6.500684 AGTGAGTGATGTTTGCGAATTAAT 57.499 33.333 0.00 0.00 0.00 1.40
3005 5424 5.556915 TCGATATTGGTTTGTTGGTCTTCT 58.443 37.500 0.00 0.00 0.00 2.85
3030 5449 6.796705 TTAGCAAACTTCCTACTTAAGTGC 57.203 37.500 18.56 9.34 37.26 4.40
3219 6110 7.039223 ACGATTAAGGTAAAGAGAGAACTTGGA 60.039 37.037 0.00 0.00 0.00 3.53
3220 6111 7.275999 CGATTAAGGTAAAGAGAGAACTTGGAC 59.724 40.741 0.00 0.00 0.00 4.02
3252 6143 7.927092 TGATGAGCAGATATTTTCTCTTCTCTG 59.073 37.037 9.12 0.00 33.51 3.35
3289 6180 0.251165 TTCAGGGGCTAACACCAAGC 60.251 55.000 0.00 0.00 39.33 4.01
3401 6293 8.962111 CCTACGTTTTCCTCGTTATAATTACTC 58.038 37.037 0.00 0.00 41.72 2.59
3564 6458 5.802956 GGAGAAAGATAGATGCATAGTACGC 59.197 44.000 0.00 0.00 0.00 4.42
3574 6468 5.705905 AGATGCATAGTACGCTGTCAGTATA 59.294 40.000 0.00 0.00 0.00 1.47
3590 6484 5.012148 GTCAGTATATGGGCTCCAGTGTATT 59.988 44.000 0.41 0.00 36.75 1.89
3605 6499 5.106038 CCAGTGTATTCTACGAACACAGGTA 60.106 44.000 7.49 0.00 44.68 3.08
3707 6601 3.928754 TGGGAAGCTGGTCTCATACTAT 58.071 45.455 0.00 0.00 0.00 2.12
3725 6619 8.959548 TCATACTATAACTGTTACAAACTCCGA 58.040 33.333 1.73 0.00 0.00 4.55
3733 6627 3.319972 TGTTACAAACTCCGAGCTACTGT 59.680 43.478 0.00 0.00 0.00 3.55
3821 6715 2.752358 CCTGGAGGCTGAAGCACA 59.248 61.111 4.43 0.00 44.36 4.57
3824 6718 2.045536 GGAGGCTGAAGCACAGGG 60.046 66.667 4.43 0.00 45.82 4.45
3875 6769 0.741221 AAATCAGGAGCGAACCGAGC 60.741 55.000 0.00 0.00 34.73 5.03
3898 6792 4.671766 CGAAAGAATTGTAGGAAAAGGGCG 60.672 45.833 0.00 0.00 0.00 6.13
3910 6804 1.208165 AAAGGGCGGGGTCTCTGAAT 61.208 55.000 0.00 0.00 0.00 2.57
3916 6810 1.471676 GCGGGGTCTCTGAATACAGTG 60.472 57.143 0.00 0.00 43.81 3.66
3956 6850 3.537580 AGTTTGAAAACGGTGTGCTCTA 58.462 40.909 0.48 0.00 43.51 2.43
3988 6882 2.148916 TCTGTAACAAGTGCCGAGTG 57.851 50.000 0.00 0.00 0.00 3.51
3998 6892 1.411246 AGTGCCGAGTGTGTGAGTTAA 59.589 47.619 0.00 0.00 0.00 2.01
4003 6897 3.991773 GCCGAGTGTGTGAGTTAATGTAA 59.008 43.478 0.00 0.00 0.00 2.41
4004 6898 4.091509 GCCGAGTGTGTGAGTTAATGTAAG 59.908 45.833 0.00 0.00 0.00 2.34
4009 6903 8.332464 CGAGTGTGTGAGTTAATGTAAGAAAAA 58.668 33.333 0.00 0.00 0.00 1.94
4045 6939 6.105333 CAGTTTTTGTGGAGGTTGAAATGAA 58.895 36.000 0.00 0.00 0.00 2.57
4046 6940 6.256321 CAGTTTTTGTGGAGGTTGAAATGAAG 59.744 38.462 0.00 0.00 0.00 3.02
4047 6941 5.930837 TTTTGTGGAGGTTGAAATGAAGT 57.069 34.783 0.00 0.00 0.00 3.01
4048 6942 5.930837 TTTGTGGAGGTTGAAATGAAGTT 57.069 34.783 0.00 0.00 0.00 2.66
4053 6947 6.486657 TGTGGAGGTTGAAATGAAGTTAAGAG 59.513 38.462 0.00 0.00 0.00 2.85
4054 6948 5.473504 TGGAGGTTGAAATGAAGTTAAGAGC 59.526 40.000 0.00 0.00 0.00 4.09
4055 6949 5.707764 GGAGGTTGAAATGAAGTTAAGAGCT 59.292 40.000 0.00 0.00 0.00 4.09
4056 6950 6.348868 GGAGGTTGAAATGAAGTTAAGAGCTG 60.349 42.308 0.00 0.00 0.00 4.24
4057 6951 6.299141 AGGTTGAAATGAAGTTAAGAGCTGA 58.701 36.000 0.00 0.00 0.00 4.26
4058 6952 6.772716 AGGTTGAAATGAAGTTAAGAGCTGAA 59.227 34.615 0.00 0.00 0.00 3.02
4059 6953 6.858478 GGTTGAAATGAAGTTAAGAGCTGAAC 59.142 38.462 0.00 0.00 0.00 3.18
4060 6954 7.255277 GGTTGAAATGAAGTTAAGAGCTGAACT 60.255 37.037 0.00 0.00 37.50 3.01
4061 6955 8.774586 GTTGAAATGAAGTTAAGAGCTGAACTA 58.225 33.333 0.00 0.00 34.81 2.24
4062 6956 9.507329 TTGAAATGAAGTTAAGAGCTGAACTAT 57.493 29.630 0.00 0.00 34.81 2.12
4063 6957 8.939929 TGAAATGAAGTTAAGAGCTGAACTATG 58.060 33.333 0.00 0.00 34.81 2.23
4064 6958 7.856145 AATGAAGTTAAGAGCTGAACTATGG 57.144 36.000 0.00 0.00 34.81 2.74
4065 6959 5.178797 TGAAGTTAAGAGCTGAACTATGGC 58.821 41.667 0.00 0.00 34.81 4.40
4066 6960 5.046304 TGAAGTTAAGAGCTGAACTATGGCT 60.046 40.000 0.00 0.00 34.81 4.75
4067 6961 5.428184 AGTTAAGAGCTGAACTATGGCTT 57.572 39.130 0.00 0.00 36.37 4.35
4068 6962 5.810095 AGTTAAGAGCTGAACTATGGCTTT 58.190 37.500 0.00 0.00 36.37 3.51
4069 6963 6.241645 AGTTAAGAGCTGAACTATGGCTTTT 58.758 36.000 0.00 0.00 36.37 2.27
4070 6964 6.372937 AGTTAAGAGCTGAACTATGGCTTTTC 59.627 38.462 0.00 0.00 36.37 2.29
4071 6965 4.566426 AGAGCTGAACTATGGCTTTTCT 57.434 40.909 0.00 0.00 36.37 2.52
4072 6966 4.916183 AGAGCTGAACTATGGCTTTTCTT 58.084 39.130 0.00 0.00 36.37 2.52
4073 6967 5.320277 AGAGCTGAACTATGGCTTTTCTTT 58.680 37.500 0.00 0.00 36.37 2.52
4074 6968 5.772169 AGAGCTGAACTATGGCTTTTCTTTT 59.228 36.000 0.00 0.00 36.37 2.27
4075 6969 6.266330 AGAGCTGAACTATGGCTTTTCTTTTT 59.734 34.615 0.00 0.00 36.37 1.94
4076 6970 6.450545 AGCTGAACTATGGCTTTTCTTTTTC 58.549 36.000 0.00 0.00 31.81 2.29
4077 6971 6.266330 AGCTGAACTATGGCTTTTCTTTTTCT 59.734 34.615 0.00 0.00 31.81 2.52
4078 6972 6.364435 GCTGAACTATGGCTTTTCTTTTTCTG 59.636 38.462 0.00 0.00 0.00 3.02
4079 6973 7.581213 TGAACTATGGCTTTTCTTTTTCTGA 57.419 32.000 0.00 0.00 0.00 3.27
4080 6974 7.651808 TGAACTATGGCTTTTCTTTTTCTGAG 58.348 34.615 0.00 0.00 0.00 3.35
4081 6975 7.502226 TGAACTATGGCTTTTCTTTTTCTGAGA 59.498 33.333 0.00 0.00 0.00 3.27
4082 6976 7.823745 ACTATGGCTTTTCTTTTTCTGAGAA 57.176 32.000 0.00 0.00 0.00 2.87
4083 6977 8.237811 ACTATGGCTTTTCTTTTTCTGAGAAA 57.762 30.769 3.02 3.02 40.36 2.52
4084 6978 8.695456 ACTATGGCTTTTCTTTTTCTGAGAAAA 58.305 29.630 15.81 15.81 45.70 2.29
4085 6979 9.533253 CTATGGCTTTTCTTTTTCTGAGAAAAA 57.467 29.630 26.05 26.05 46.54 1.94
4156 7050 2.868899 CTCTTTCTGCTTCCCCTGTTT 58.131 47.619 0.00 0.00 0.00 2.83
4158 7052 1.537202 CTTTCTGCTTCCCCTGTTTCG 59.463 52.381 0.00 0.00 0.00 3.46
4159 7053 0.472471 TTCTGCTTCCCCTGTTTCGT 59.528 50.000 0.00 0.00 0.00 3.85
4170 7064 2.416836 CCCTGTTTCGTATCGAGCTTCA 60.417 50.000 0.00 0.00 37.14 3.02
4171 7065 2.854777 CCTGTTTCGTATCGAGCTTCAG 59.145 50.000 0.00 0.00 37.14 3.02
4172 7066 3.427638 CCTGTTTCGTATCGAGCTTCAGA 60.428 47.826 0.00 0.00 37.14 3.27
4173 7067 4.166523 CTGTTTCGTATCGAGCTTCAGAA 58.833 43.478 0.00 0.00 37.14 3.02
4174 7068 4.552355 TGTTTCGTATCGAGCTTCAGAAA 58.448 39.130 0.00 0.00 37.14 2.52
4175 7069 5.168569 TGTTTCGTATCGAGCTTCAGAAAT 58.831 37.500 0.00 0.00 37.14 2.17
4176 7070 5.288712 TGTTTCGTATCGAGCTTCAGAAATC 59.711 40.000 0.00 0.00 37.14 2.17
4177 7071 4.632538 TCGTATCGAGCTTCAGAAATCA 57.367 40.909 0.00 0.00 0.00 2.57
4178 7072 4.993905 TCGTATCGAGCTTCAGAAATCAA 58.006 39.130 0.00 0.00 0.00 2.57
4179 7073 5.407502 TCGTATCGAGCTTCAGAAATCAAA 58.592 37.500 0.00 0.00 0.00 2.69
4180 7074 5.867174 TCGTATCGAGCTTCAGAAATCAAAA 59.133 36.000 0.00 0.00 0.00 2.44
4181 7075 6.367695 TCGTATCGAGCTTCAGAAATCAAAAA 59.632 34.615 0.00 0.00 0.00 1.94
4204 7098 8.862325 AAAAAGAAAAGGGAATTCAGTTTTGT 57.138 26.923 17.23 12.50 31.09 2.83
4205 7099 7.848223 AAAGAAAAGGGAATTCAGTTTTGTG 57.152 32.000 17.23 0.00 0.00 3.33
4206 7100 6.790232 AGAAAAGGGAATTCAGTTTTGTGA 57.210 33.333 17.23 0.00 0.00 3.58
4207 7101 7.181569 AGAAAAGGGAATTCAGTTTTGTGAA 57.818 32.000 17.23 0.00 40.68 3.18
4208 7102 7.619965 AGAAAAGGGAATTCAGTTTTGTGAAA 58.380 30.769 17.23 0.00 39.84 2.69
4209 7103 7.765819 AGAAAAGGGAATTCAGTTTTGTGAAAG 59.234 33.333 17.23 0.00 39.84 2.62
4210 7104 6.790232 AAGGGAATTCAGTTTTGTGAAAGA 57.210 33.333 7.93 0.00 39.84 2.52
4211 7105 6.149129 AGGGAATTCAGTTTTGTGAAAGAC 57.851 37.500 7.93 0.00 39.84 3.01
4212 7106 5.893824 AGGGAATTCAGTTTTGTGAAAGACT 59.106 36.000 7.93 0.00 39.84 3.24
4213 7107 7.060421 AGGGAATTCAGTTTTGTGAAAGACTA 58.940 34.615 7.93 0.00 39.84 2.59
4214 7108 7.559897 AGGGAATTCAGTTTTGTGAAAGACTAA 59.440 33.333 7.93 0.00 39.84 2.24
4215 7109 8.194769 GGGAATTCAGTTTTGTGAAAGACTAAA 58.805 33.333 7.93 0.00 39.84 1.85
4216 7110 9.237846 GGAATTCAGTTTTGTGAAAGACTAAAG 57.762 33.333 7.93 0.00 39.84 1.85
4218 7112 9.788960 AATTCAGTTTTGTGAAAGACTAAAGAC 57.211 29.630 0.00 0.00 39.84 3.01
4219 7113 7.000575 TCAGTTTTGTGAAAGACTAAAGACG 57.999 36.000 0.00 0.00 31.14 4.18
4220 7114 6.036735 TCAGTTTTGTGAAAGACTAAAGACGG 59.963 38.462 0.00 0.00 31.14 4.79
4221 7115 6.036735 CAGTTTTGTGAAAGACTAAAGACGGA 59.963 38.462 0.00 0.00 31.14 4.69
4222 7116 6.596497 AGTTTTGTGAAAGACTAAAGACGGAA 59.404 34.615 0.00 0.00 31.14 4.30
4223 7117 6.988622 TTTGTGAAAGACTAAAGACGGAAA 57.011 33.333 0.00 0.00 0.00 3.13
4224 7118 6.988622 TTGTGAAAGACTAAAGACGGAAAA 57.011 33.333 0.00 0.00 0.00 2.29
4225 7119 7.562454 TTGTGAAAGACTAAAGACGGAAAAT 57.438 32.000 0.00 0.00 0.00 1.82
4226 7120 7.562454 TGTGAAAGACTAAAGACGGAAAATT 57.438 32.000 0.00 0.00 0.00 1.82
4227 7121 7.992008 TGTGAAAGACTAAAGACGGAAAATTT 58.008 30.769 0.00 0.00 0.00 1.82
4228 7122 9.111613 TGTGAAAGACTAAAGACGGAAAATTTA 57.888 29.630 0.00 0.00 0.00 1.40
4229 7123 9.940166 GTGAAAGACTAAAGACGGAAAATTTAA 57.060 29.630 0.00 0.00 0.00 1.52
4239 7133 9.869757 AAAGACGGAAAATTTAATTCATTAGGG 57.130 29.630 0.00 0.00 0.00 3.53
4240 7134 8.007405 AGACGGAAAATTTAATTCATTAGGGG 57.993 34.615 0.00 0.00 0.00 4.79
4241 7135 7.618117 AGACGGAAAATTTAATTCATTAGGGGT 59.382 33.333 0.00 0.00 0.00 4.95
4242 7136 8.826293 ACGGAAAATTTAATTCATTAGGGGTA 57.174 30.769 0.00 0.00 0.00 3.69
4243 7137 9.429109 ACGGAAAATTTAATTCATTAGGGGTAT 57.571 29.630 0.00 0.00 0.00 2.73
4252 7146 9.569122 TTAATTCATTAGGGGTATTAGAGCAAC 57.431 33.333 0.00 0.00 0.00 4.17
4253 7147 6.824958 TTCATTAGGGGTATTAGAGCAACT 57.175 37.500 0.00 0.00 0.00 3.16
4254 7148 6.824958 TCATTAGGGGTATTAGAGCAACTT 57.175 37.500 0.00 0.00 0.00 2.66
4255 7149 7.208064 TCATTAGGGGTATTAGAGCAACTTT 57.792 36.000 0.00 0.00 0.00 2.66
4256 7150 8.326765 TCATTAGGGGTATTAGAGCAACTTTA 57.673 34.615 0.00 0.00 0.00 1.85
4257 7151 8.774183 TCATTAGGGGTATTAGAGCAACTTTAA 58.226 33.333 0.00 0.00 0.00 1.52
4258 7152 9.574516 CATTAGGGGTATTAGAGCAACTTTAAT 57.425 33.333 0.00 0.00 0.00 1.40
4259 7153 8.974060 TTAGGGGTATTAGAGCAACTTTAATG 57.026 34.615 1.75 0.00 0.00 1.90
4260 7154 6.365520 AGGGGTATTAGAGCAACTTTAATGG 58.634 40.000 1.75 0.00 0.00 3.16
4261 7155 5.535030 GGGGTATTAGAGCAACTTTAATGGG 59.465 44.000 1.75 0.00 0.00 4.00
4262 7156 5.535030 GGGTATTAGAGCAACTTTAATGGGG 59.465 44.000 1.75 0.00 0.00 4.96
4263 7157 5.009710 GGTATTAGAGCAACTTTAATGGGGC 59.990 44.000 1.75 0.00 0.00 5.80
4264 7158 1.463674 AGAGCAACTTTAATGGGGCG 58.536 50.000 0.00 0.00 0.00 6.13
4265 7159 1.004277 AGAGCAACTTTAATGGGGCGA 59.996 47.619 0.00 0.00 0.00 5.54
4266 7160 1.132453 GAGCAACTTTAATGGGGCGAC 59.868 52.381 0.00 0.00 0.00 5.19
4278 7172 3.192922 GGCGACCCATTTCGTCCG 61.193 66.667 0.00 0.00 41.26 4.79
4279 7173 3.861263 GCGACCCATTTCGTCCGC 61.861 66.667 0.00 0.00 41.26 5.54
4280 7174 3.192922 CGACCCATTTCGTCCGCC 61.193 66.667 0.00 0.00 34.16 6.13
4281 7175 2.822701 GACCCATTTCGTCCGCCC 60.823 66.667 0.00 0.00 0.00 6.13
4282 7176 4.770874 ACCCATTTCGTCCGCCCG 62.771 66.667 0.00 0.00 0.00 6.13
4297 7191 4.020378 CCGCGTCCGTTTGGGTTG 62.020 66.667 4.92 0.00 37.00 3.77
4298 7192 4.020378 CGCGTCCGTTTGGGTTGG 62.020 66.667 0.00 0.00 37.00 3.77
4299 7193 4.337060 GCGTCCGTTTGGGTTGGC 62.337 66.667 0.00 0.00 37.00 4.52
4300 7194 4.020378 CGTCCGTTTGGGTTGGCG 62.020 66.667 0.00 0.00 37.00 5.69
4301 7195 2.903350 GTCCGTTTGGGTTGGCGT 60.903 61.111 0.00 0.00 37.00 5.68
4302 7196 2.902846 TCCGTTTGGGTTGGCGTG 60.903 61.111 0.00 0.00 37.00 5.34
4303 7197 3.972276 CCGTTTGGGTTGGCGTGG 61.972 66.667 0.00 0.00 0.00 4.94
4304 7198 2.902846 CGTTTGGGTTGGCGTGGA 60.903 61.111 0.00 0.00 0.00 4.02
4305 7199 2.725641 GTTTGGGTTGGCGTGGAC 59.274 61.111 0.00 0.00 0.00 4.02
4306 7200 2.122167 GTTTGGGTTGGCGTGGACA 61.122 57.895 0.00 0.00 0.00 4.02
4307 7201 1.379977 TTTGGGTTGGCGTGGACAA 60.380 52.632 0.00 0.00 0.00 3.18
4308 7202 0.970937 TTTGGGTTGGCGTGGACAAA 60.971 50.000 0.00 0.00 29.78 2.83
4309 7203 0.970937 TTGGGTTGGCGTGGACAAAA 60.971 50.000 0.00 0.00 29.78 2.44
4310 7204 1.362355 GGGTTGGCGTGGACAAAAG 59.638 57.895 0.00 0.00 29.78 2.27
4311 7205 1.388837 GGGTTGGCGTGGACAAAAGT 61.389 55.000 0.00 0.00 29.78 2.66
4312 7206 0.248866 GGTTGGCGTGGACAAAAGTG 60.249 55.000 0.00 0.00 29.78 3.16
4313 7207 0.248866 GTTGGCGTGGACAAAAGTGG 60.249 55.000 0.00 0.00 29.78 4.00
4314 7208 2.010582 TTGGCGTGGACAAAAGTGGC 62.011 55.000 0.00 0.00 0.00 5.01
4315 7209 2.051345 GCGTGGACAAAAGTGGCG 60.051 61.111 0.00 0.00 31.03 5.69
4316 7210 2.637025 CGTGGACAAAAGTGGCGG 59.363 61.111 0.00 0.00 31.03 6.13
4317 7211 2.335011 GTGGACAAAAGTGGCGGC 59.665 61.111 0.00 0.00 31.03 6.53
4318 7212 2.909965 TGGACAAAAGTGGCGGCC 60.910 61.111 13.32 13.32 31.03 6.13
4319 7213 3.680786 GGACAAAAGTGGCGGCCC 61.681 66.667 17.97 8.02 31.03 5.80
4320 7214 2.909965 GACAAAAGTGGCGGCCCA 60.910 61.111 17.97 1.34 39.32 5.36
4321 7215 2.443016 ACAAAAGTGGCGGCCCAA 60.443 55.556 17.97 0.00 44.33 4.12
4322 7216 2.028925 CAAAAGTGGCGGCCCAAC 59.971 61.111 17.97 9.12 44.33 3.77
4323 7217 3.601685 AAAAGTGGCGGCCCAACG 61.602 61.111 17.97 0.00 44.33 4.10
4336 7230 4.676586 CAACGCGCCGACCCAAAC 62.677 66.667 5.73 0.00 0.00 2.93
4337 7231 4.922026 AACGCGCCGACCCAAACT 62.922 61.111 5.73 0.00 0.00 2.66
4340 7234 2.975799 GCGCCGACCCAAACTCAA 60.976 61.111 0.00 0.00 0.00 3.02
4341 7235 2.548295 GCGCCGACCCAAACTCAAA 61.548 57.895 0.00 0.00 0.00 2.69
4342 7236 1.862602 GCGCCGACCCAAACTCAAAT 61.863 55.000 0.00 0.00 0.00 2.32
4343 7237 0.168128 CGCCGACCCAAACTCAAATC 59.832 55.000 0.00 0.00 0.00 2.17
4344 7238 0.168128 GCCGACCCAAACTCAAATCG 59.832 55.000 0.00 0.00 0.00 3.34
4345 7239 1.519408 CCGACCCAAACTCAAATCGT 58.481 50.000 0.00 0.00 0.00 3.73
4346 7240 1.196808 CCGACCCAAACTCAAATCGTG 59.803 52.381 0.00 0.00 0.00 4.35
4347 7241 1.871039 CGACCCAAACTCAAATCGTGT 59.129 47.619 0.00 0.00 0.00 4.49
4348 7242 2.096417 CGACCCAAACTCAAATCGTGTC 60.096 50.000 0.00 0.00 0.00 3.67
4349 7243 2.225727 GACCCAAACTCAAATCGTGTCC 59.774 50.000 0.00 0.00 0.00 4.02
4350 7244 1.196808 CCCAAACTCAAATCGTGTCCG 59.803 52.381 0.00 0.00 0.00 4.79
4351 7245 1.399727 CCAAACTCAAATCGTGTCCGC 60.400 52.381 0.00 0.00 0.00 5.54
4352 7246 0.872388 AAACTCAAATCGTGTCCGCC 59.128 50.000 0.00 0.00 0.00 6.13
4353 7247 0.953960 AACTCAAATCGTGTCCGCCC 60.954 55.000 0.00 0.00 0.00 6.13
4354 7248 2.433491 TCAAATCGTGTCCGCCCG 60.433 61.111 0.00 0.00 0.00 6.13
4355 7249 3.496131 CAAATCGTGTCCGCCCGG 61.496 66.667 0.00 0.00 0.00 5.73
4381 7275 2.513897 CCGACCCATTTCCGGCTC 60.514 66.667 0.00 0.00 36.62 4.70
4382 7276 2.267642 CGACCCATTTCCGGCTCA 59.732 61.111 0.00 0.00 0.00 4.26
4383 7277 1.376683 CGACCCATTTCCGGCTCAA 60.377 57.895 0.00 0.00 0.00 3.02
4384 7278 0.958382 CGACCCATTTCCGGCTCAAA 60.958 55.000 0.00 0.00 0.00 2.69
4385 7279 1.253100 GACCCATTTCCGGCTCAAAA 58.747 50.000 0.00 0.00 0.00 2.44
4386 7280 1.824852 GACCCATTTCCGGCTCAAAAT 59.175 47.619 0.00 0.00 0.00 1.82
4387 7281 2.233676 GACCCATTTCCGGCTCAAAATT 59.766 45.455 0.00 0.00 0.00 1.82
4388 7282 3.436243 ACCCATTTCCGGCTCAAAATTA 58.564 40.909 0.00 0.00 0.00 1.40
4389 7283 3.194755 ACCCATTTCCGGCTCAAAATTAC 59.805 43.478 0.00 0.00 0.00 1.89
4390 7284 3.434637 CCATTTCCGGCTCAAAATTACG 58.565 45.455 0.00 0.00 0.00 3.18
4391 7285 2.622546 TTTCCGGCTCAAAATTACGC 57.377 45.000 0.00 0.00 0.00 4.42
4392 7286 0.806241 TTCCGGCTCAAAATTACGCC 59.194 50.000 0.00 0.00 39.14 5.68
4393 7287 0.035820 TCCGGCTCAAAATTACGCCT 60.036 50.000 0.00 0.00 40.34 5.52
4394 7288 0.098728 CCGGCTCAAAATTACGCCTG 59.901 55.000 0.00 0.00 40.34 4.85
4395 7289 0.098728 CGGCTCAAAATTACGCCTGG 59.901 55.000 0.00 0.00 40.34 4.45
4396 7290 1.459450 GGCTCAAAATTACGCCTGGA 58.541 50.000 0.00 0.00 39.42 3.86
4397 7291 1.816224 GGCTCAAAATTACGCCTGGAA 59.184 47.619 0.00 0.00 39.42 3.53
4398 7292 2.427095 GGCTCAAAATTACGCCTGGAAT 59.573 45.455 0.00 0.00 39.42 3.01
4399 7293 3.438360 GCTCAAAATTACGCCTGGAATG 58.562 45.455 0.00 0.00 0.00 2.67
4400 7294 3.438360 CTCAAAATTACGCCTGGAATGC 58.562 45.455 0.00 0.00 0.00 3.56
4483 7377 2.493030 CGCCACCGGTCGTCTTAT 59.507 61.111 2.59 0.00 0.00 1.73
4484 7378 1.153706 CGCCACCGGTCGTCTTATT 60.154 57.895 2.59 0.00 0.00 1.40
4485 7379 0.738412 CGCCACCGGTCGTCTTATTT 60.738 55.000 2.59 0.00 0.00 1.40
4486 7380 1.469595 CGCCACCGGTCGTCTTATTTA 60.470 52.381 2.59 0.00 0.00 1.40
4487 7381 2.800629 CGCCACCGGTCGTCTTATTTAT 60.801 50.000 2.59 0.00 0.00 1.40
4488 7382 2.542595 GCCACCGGTCGTCTTATTTATG 59.457 50.000 2.59 0.00 0.00 1.90
4489 7383 3.738899 GCCACCGGTCGTCTTATTTATGA 60.739 47.826 2.59 0.00 0.00 2.15
4490 7384 3.800506 CCACCGGTCGTCTTATTTATGAC 59.199 47.826 2.59 0.00 33.04 3.06
4499 7393 4.675510 GTCTTATTTATGACGACCACCGA 58.324 43.478 0.00 0.00 41.76 4.69
4500 7394 4.501921 GTCTTATTTATGACGACCACCGAC 59.498 45.833 0.00 0.00 41.76 4.79
4501 7395 4.158209 TCTTATTTATGACGACCACCGACA 59.842 41.667 0.00 0.00 45.70 4.35
4502 7396 2.357327 TTTATGACGACCACCGACAG 57.643 50.000 0.00 0.00 44.96 3.51
4503 7397 0.108992 TTATGACGACCACCGACAGC 60.109 55.000 0.00 0.00 44.96 4.40
4504 7398 2.261172 TATGACGACCACCGACAGCG 62.261 60.000 0.00 0.00 44.96 5.18
4536 7430 2.972505 CCAGTGCGTGCGTCCTTT 60.973 61.111 0.00 0.00 0.00 3.11
4537 7431 2.542907 CCAGTGCGTGCGTCCTTTT 61.543 57.895 0.00 0.00 0.00 2.27
4538 7432 1.355210 CAGTGCGTGCGTCCTTTTT 59.645 52.632 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.181447 GGGAGAAGGATGCATTGATCTCA 60.181 47.826 25.19 0.00 36.02 3.27
74 75 0.395311 ACTCTATTCACGCGGGGAGA 60.395 55.000 17.54 12.64 0.00 3.71
111 112 8.567948 CCAGTATCTGTTAAATCAGTTGTTTGT 58.432 33.333 0.00 0.00 36.85 2.83
164 166 5.343307 AAATTTGGGATAGCCATCAACAC 57.657 39.130 0.00 0.00 35.15 3.32
173 175 9.476202 GTAATTGTGGATAAAATTTGGGATAGC 57.524 33.333 0.00 0.00 0.00 2.97
202 204 5.764686 GTGGGGCAAAGAAATGAAGAAAAAT 59.235 36.000 0.00 0.00 0.00 1.82
212 214 0.958822 GACGTGTGGGGCAAAGAAAT 59.041 50.000 0.00 0.00 0.00 2.17
244 247 2.223852 GCCGATGTTTCTCTCCCTAGTC 60.224 54.545 0.00 0.00 0.00 2.59
342 345 3.046390 CGCTCAATCCTATCGAAGTCAC 58.954 50.000 0.00 0.00 0.00 3.67
423 426 9.574516 AGATTCTACCAAAAGCTAAAGAAGAAA 57.425 29.630 0.00 0.00 0.00 2.52
446 449 5.547465 TGTCGTTACAAATGGTCTCAAGAT 58.453 37.500 0.00 0.00 30.91 2.40
501 504 7.092137 TCATTCTCTCCATTTGCAATTGTAG 57.908 36.000 17.53 12.58 0.00 2.74
507 510 5.824624 GTCCTATCATTCTCTCCATTTGCAA 59.175 40.000 0.00 0.00 0.00 4.08
510 513 5.996513 CCAGTCCTATCATTCTCTCCATTTG 59.003 44.000 0.00 0.00 0.00 2.32
511 514 5.907662 TCCAGTCCTATCATTCTCTCCATTT 59.092 40.000 0.00 0.00 0.00 2.32
518 521 5.606505 GGAAAGTCCAGTCCTATCATTCTC 58.393 45.833 0.00 0.00 36.28 2.87
572 575 6.742718 CCAATAGTTGAGCACAAAATACGAAG 59.257 38.462 0.00 0.00 37.77 3.79
574 577 5.935206 TCCAATAGTTGAGCACAAAATACGA 59.065 36.000 0.00 0.00 37.77 3.43
582 585 8.347004 TCAATTAAATCCAATAGTTGAGCACA 57.653 30.769 0.00 0.00 29.21 4.57
667 675 9.127277 AGTATGTAACAAAAACAGTACCATTGT 57.873 29.630 0.00 0.00 35.86 2.71
691 699 5.827267 GGGAGTATTAGTTTACGGAGAGAGT 59.173 44.000 0.00 0.00 0.00 3.24
692 700 6.063404 AGGGAGTATTAGTTTACGGAGAGAG 58.937 44.000 0.00 0.00 0.00 3.20
693 701 6.011122 AGGGAGTATTAGTTTACGGAGAGA 57.989 41.667 0.00 0.00 0.00 3.10
694 702 6.016943 CAGAGGGAGTATTAGTTTACGGAGAG 60.017 46.154 0.00 0.00 0.00 3.20
695 703 5.826737 CAGAGGGAGTATTAGTTTACGGAGA 59.173 44.000 0.00 0.00 0.00 3.71
696 704 5.593502 ACAGAGGGAGTATTAGTTTACGGAG 59.406 44.000 0.00 0.00 0.00 4.63
697 705 5.513233 ACAGAGGGAGTATTAGTTTACGGA 58.487 41.667 0.00 0.00 0.00 4.69
698 706 5.848833 ACAGAGGGAGTATTAGTTTACGG 57.151 43.478 0.00 0.00 0.00 4.02
699 707 8.465201 AGTTTACAGAGGGAGTATTAGTTTACG 58.535 37.037 0.00 0.00 0.00 3.18
710 718 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
711 719 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
712 720 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
713 721 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
714 722 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
729 737 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
730 738 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
731 739 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
732 740 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
733 741 9.733219 AATACTAAAGTAGTGATCTAAACGCTC 57.267 33.333 0.00 0.00 39.81 5.03
734 742 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
735 743 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
839 847 9.979897 TTATACTGTACTCCCTCTGTAAACTAA 57.020 33.333 0.00 0.00 0.00 2.24
840 848 9.979897 TTTATACTGTACTCCCTCTGTAAACTA 57.020 33.333 0.00 0.00 0.00 2.24
841 849 8.890410 TTTATACTGTACTCCCTCTGTAAACT 57.110 34.615 0.00 0.00 0.00 2.66
845 853 9.263446 ACAATTTTATACTGTACTCCCTCTGTA 57.737 33.333 0.00 0.00 0.00 2.74
846 854 8.147244 ACAATTTTATACTGTACTCCCTCTGT 57.853 34.615 0.00 0.00 0.00 3.41
1292 1317 4.221422 GGAGCGCGCCCATGTAGA 62.221 66.667 30.33 0.00 0.00 2.59
1440 1468 7.424001 CAATTTGAGCTATTCAGGAGGAAATC 58.576 38.462 0.00 0.00 39.39 2.17
1449 1477 4.996788 AAGCCCAATTTGAGCTATTCAG 57.003 40.909 5.79 0.00 37.07 3.02
1455 1484 3.728385 AGAGTAAGCCCAATTTGAGCT 57.272 42.857 0.00 0.00 38.88 4.09
1588 1619 4.570369 CACTAAAAGGGCCAACAAAAACAG 59.430 41.667 6.18 0.00 0.00 3.16
1600 1631 5.086104 TCAGAGATACACACTAAAAGGGC 57.914 43.478 0.00 0.00 0.00 5.19
1772 1803 9.656040 CCATTTACAGATCCAAATTCATTCAAA 57.344 29.630 0.00 0.00 0.00 2.69
1777 1808 6.896860 TGGACCATTTACAGATCCAAATTCAT 59.103 34.615 0.00 0.00 36.51 2.57
1879 4294 2.679355 TTGAAAACCTGTTCATCGCG 57.321 45.000 0.00 0.00 37.36 5.87
2000 4416 6.240549 ACCATAGAAGGTGGAATCAACTAG 57.759 41.667 0.00 0.00 40.66 2.57
2001 4417 6.443849 AGAACCATAGAAGGTGGAATCAACTA 59.556 38.462 0.00 0.00 40.66 2.24
2002 4418 5.251700 AGAACCATAGAAGGTGGAATCAACT 59.748 40.000 0.00 0.00 44.02 3.16
2245 4663 9.628500 AATATTACTTCATAAACCCTCACCTTC 57.372 33.333 0.00 0.00 0.00 3.46
2566 4985 6.194967 CCAATACCTGAAAAGGGTAAAGGAT 58.805 40.000 0.00 0.00 41.83 3.24
2682 5101 9.846248 AAATTTGTTGAAGAATGATGCTAGTAC 57.154 29.630 0.00 0.00 0.00 2.73
2834 5253 5.940192 AATTCGCAAACATCACTCACTAA 57.060 34.783 0.00 0.00 0.00 2.24
2912 5331 1.673168 GGCCTGAAATCCTGCAGTAG 58.327 55.000 13.81 0.00 0.00 2.57
3005 5424 8.098286 TGCACTTAAGTAGGAAGTTTGCTAATA 58.902 33.333 8.04 0.00 34.90 0.98
3030 5449 7.212976 AGTCAAATGGTAGCAGATACATACTG 58.787 38.462 0.00 0.00 35.96 2.74
3206 6097 4.163427 TCAATCCTGTCCAAGTTCTCTCT 58.837 43.478 0.00 0.00 0.00 3.10
3219 6110 7.288560 AGAAAATATCTGCTCATCAATCCTGT 58.711 34.615 0.00 0.00 36.88 4.00
3220 6111 7.662258 AGAGAAAATATCTGCTCATCAATCCTG 59.338 37.037 0.00 0.00 38.96 3.86
3252 6143 5.508994 CCCTGAAACAATTTAGTTGGTGGTC 60.509 44.000 0.00 0.00 37.92 4.02
3289 6180 3.494626 CACCAACAGCATATAAGTAGCCG 59.505 47.826 0.00 0.00 0.00 5.52
3564 6458 2.968574 ACTGGAGCCCATATACTGACAG 59.031 50.000 0.00 0.00 30.82 3.51
3574 6468 2.365617 CGTAGAATACACTGGAGCCCAT 59.634 50.000 0.00 0.00 43.24 4.00
3590 6484 6.604396 TGGAGAATAATACCTGTGTTCGTAGA 59.396 38.462 0.00 0.00 0.00 2.59
3707 6601 4.595762 AGCTCGGAGTTTGTAACAGTTA 57.404 40.909 6.90 0.00 0.00 2.24
3725 6619 1.821753 CAGGCAGTCTGTACAGTAGCT 59.178 52.381 21.99 15.18 38.64 3.32
3754 6648 0.951040 GGATCCCGTCGATGGCATTC 60.951 60.000 18.81 3.72 0.00 2.67
3821 6715 1.719063 TTCAGGTTCAGCCAAGCCCT 61.719 55.000 0.00 0.00 40.61 5.19
3824 6718 2.159324 GCTAATTCAGGTTCAGCCAAGC 60.159 50.000 0.00 0.00 40.61 4.01
3875 6769 4.671766 CGCCCTTTTCCTACAATTCTTTCG 60.672 45.833 0.00 0.00 0.00 3.46
3898 6792 1.834263 AGCACTGTATTCAGAGACCCC 59.166 52.381 6.32 0.00 43.76 4.95
3933 6827 4.134563 AGAGCACACCGTTTTCAAACTAT 58.865 39.130 1.13 0.00 36.77 2.12
3983 6877 7.402811 TTTCTTACATTAACTCACACACTCG 57.597 36.000 0.00 0.00 0.00 4.18
4009 6903 2.223479 ACAAAAACTGCGCTCGATGTTT 60.223 40.909 9.73 9.28 34.59 2.83
4045 6939 5.428184 AAGCCATAGTTCAGCTCTTAACT 57.572 39.130 9.80 9.80 39.25 2.24
4046 6940 6.372937 AGAAAAGCCATAGTTCAGCTCTTAAC 59.627 38.462 0.00 0.00 35.30 2.01
4047 6941 6.476378 AGAAAAGCCATAGTTCAGCTCTTAA 58.524 36.000 0.00 0.00 35.30 1.85
4048 6942 6.054860 AGAAAAGCCATAGTTCAGCTCTTA 57.945 37.500 0.00 0.00 35.30 2.10
4053 6947 6.364435 CAGAAAAAGAAAAGCCATAGTTCAGC 59.636 38.462 0.00 0.00 0.00 4.26
4054 6948 7.651808 TCAGAAAAAGAAAAGCCATAGTTCAG 58.348 34.615 0.00 0.00 0.00 3.02
4055 6949 7.502226 TCTCAGAAAAAGAAAAGCCATAGTTCA 59.498 33.333 0.00 0.00 0.00 3.18
4056 6950 7.875971 TCTCAGAAAAAGAAAAGCCATAGTTC 58.124 34.615 0.00 0.00 0.00 3.01
4057 6951 7.823745 TCTCAGAAAAAGAAAAGCCATAGTT 57.176 32.000 0.00 0.00 0.00 2.24
4058 6952 7.823745 TTCTCAGAAAAAGAAAAGCCATAGT 57.176 32.000 0.00 0.00 30.00 2.12
4087 6981 5.687285 CAGCAGTTTGGAACATAGTTCAAAC 59.313 40.000 18.90 18.90 45.24 2.93
4088 6982 5.592282 TCAGCAGTTTGGAACATAGTTCAAA 59.408 36.000 11.51 4.11 39.30 2.69
4089 6983 5.129634 TCAGCAGTTTGGAACATAGTTCAA 58.870 37.500 11.51 0.00 39.30 2.69
4104 6998 3.898482 ACCAAAGGTTAGTTCAGCAGTT 58.102 40.909 0.00 0.00 27.29 3.16
4150 7044 2.854777 CTGAAGCTCGATACGAAACAGG 59.145 50.000 0.00 0.00 34.74 4.00
4156 7050 4.632538 TGATTTCTGAAGCTCGATACGA 57.367 40.909 0.00 0.00 0.00 3.43
4179 7073 8.729756 CACAAAACTGAATTCCCTTTTCTTTTT 58.270 29.630 2.27 0.00 0.00 1.94
4180 7074 8.100164 TCACAAAACTGAATTCCCTTTTCTTTT 58.900 29.630 2.27 0.00 0.00 2.27
4181 7075 7.619965 TCACAAAACTGAATTCCCTTTTCTTT 58.380 30.769 2.27 0.00 0.00 2.52
4182 7076 7.181569 TCACAAAACTGAATTCCCTTTTCTT 57.818 32.000 2.27 0.00 0.00 2.52
4183 7077 6.790232 TCACAAAACTGAATTCCCTTTTCT 57.210 33.333 2.27 0.00 0.00 2.52
4184 7078 7.763985 TCTTTCACAAAACTGAATTCCCTTTTC 59.236 33.333 2.27 0.00 30.19 2.29
4185 7079 7.549134 GTCTTTCACAAAACTGAATTCCCTTTT 59.451 33.333 2.27 3.92 30.19 2.27
4186 7080 7.041721 GTCTTTCACAAAACTGAATTCCCTTT 58.958 34.615 2.27 0.00 30.19 3.11
4187 7081 6.381133 AGTCTTTCACAAAACTGAATTCCCTT 59.619 34.615 2.27 0.00 30.19 3.95
4188 7082 5.893824 AGTCTTTCACAAAACTGAATTCCCT 59.106 36.000 2.27 0.00 30.19 4.20
4189 7083 6.149129 AGTCTTTCACAAAACTGAATTCCC 57.851 37.500 2.27 0.00 30.19 3.97
4190 7084 9.237846 CTTTAGTCTTTCACAAAACTGAATTCC 57.762 33.333 2.27 0.00 30.19 3.01
4192 7086 9.788960 GTCTTTAGTCTTTCACAAAACTGAATT 57.211 29.630 0.00 0.00 30.19 2.17
4193 7087 8.122952 CGTCTTTAGTCTTTCACAAAACTGAAT 58.877 33.333 0.00 0.00 30.19 2.57
4194 7088 7.413657 CCGTCTTTAGTCTTTCACAAAACTGAA 60.414 37.037 0.00 0.00 0.00 3.02
4195 7089 6.036735 CCGTCTTTAGTCTTTCACAAAACTGA 59.963 38.462 0.00 0.00 0.00 3.41
4196 7090 6.036735 TCCGTCTTTAGTCTTTCACAAAACTG 59.963 38.462 0.00 0.00 0.00 3.16
4197 7091 6.110707 TCCGTCTTTAGTCTTTCACAAAACT 58.889 36.000 0.00 0.00 0.00 2.66
4198 7092 6.354039 TCCGTCTTTAGTCTTTCACAAAAC 57.646 37.500 0.00 0.00 0.00 2.43
4199 7093 6.988622 TTCCGTCTTTAGTCTTTCACAAAA 57.011 33.333 0.00 0.00 0.00 2.44
4200 7094 6.988622 TTTCCGTCTTTAGTCTTTCACAAA 57.011 33.333 0.00 0.00 0.00 2.83
4201 7095 6.988622 TTTTCCGTCTTTAGTCTTTCACAA 57.011 33.333 0.00 0.00 0.00 3.33
4202 7096 7.562454 AATTTTCCGTCTTTAGTCTTTCACA 57.438 32.000 0.00 0.00 0.00 3.58
4203 7097 9.940166 TTAAATTTTCCGTCTTTAGTCTTTCAC 57.060 29.630 0.00 0.00 0.00 3.18
4213 7107 9.869757 CCCTAATGAATTAAATTTTCCGTCTTT 57.130 29.630 0.00 0.00 0.00 2.52
4214 7108 8.474831 CCCCTAATGAATTAAATTTTCCGTCTT 58.525 33.333 0.00 0.00 0.00 3.01
4215 7109 7.618117 ACCCCTAATGAATTAAATTTTCCGTCT 59.382 33.333 0.00 0.00 0.00 4.18
4216 7110 7.778083 ACCCCTAATGAATTAAATTTTCCGTC 58.222 34.615 0.00 0.00 0.00 4.79
4217 7111 7.727578 ACCCCTAATGAATTAAATTTTCCGT 57.272 32.000 0.00 0.00 0.00 4.69
4226 7120 9.569122 GTTGCTCTAATACCCCTAATGAATTAA 57.431 33.333 0.00 0.00 0.00 1.40
4227 7121 8.945193 AGTTGCTCTAATACCCCTAATGAATTA 58.055 33.333 0.00 0.00 0.00 1.40
4228 7122 7.816411 AGTTGCTCTAATACCCCTAATGAATT 58.184 34.615 0.00 0.00 0.00 2.17
4229 7123 7.394144 AGTTGCTCTAATACCCCTAATGAAT 57.606 36.000 0.00 0.00 0.00 2.57
4230 7124 6.824958 AGTTGCTCTAATACCCCTAATGAA 57.175 37.500 0.00 0.00 0.00 2.57
4231 7125 6.824958 AAGTTGCTCTAATACCCCTAATGA 57.175 37.500 0.00 0.00 0.00 2.57
4232 7126 8.974060 TTAAAGTTGCTCTAATACCCCTAATG 57.026 34.615 0.00 0.00 0.00 1.90
4233 7127 9.574516 CATTAAAGTTGCTCTAATACCCCTAAT 57.425 33.333 0.00 0.00 0.00 1.73
4234 7128 7.996644 CCATTAAAGTTGCTCTAATACCCCTAA 59.003 37.037 0.00 0.00 0.00 2.69
4235 7129 7.420913 CCCATTAAAGTTGCTCTAATACCCCTA 60.421 40.741 0.00 0.00 0.00 3.53
4236 7130 6.365520 CCATTAAAGTTGCTCTAATACCCCT 58.634 40.000 0.00 0.00 0.00 4.79
4237 7131 5.535030 CCCATTAAAGTTGCTCTAATACCCC 59.465 44.000 0.00 0.00 0.00 4.95
4238 7132 5.535030 CCCCATTAAAGTTGCTCTAATACCC 59.465 44.000 0.00 0.00 0.00 3.69
4239 7133 5.009710 GCCCCATTAAAGTTGCTCTAATACC 59.990 44.000 0.00 0.00 0.00 2.73
4240 7134 5.277828 CGCCCCATTAAAGTTGCTCTAATAC 60.278 44.000 0.00 0.00 0.00 1.89
4241 7135 4.819630 CGCCCCATTAAAGTTGCTCTAATA 59.180 41.667 0.00 0.00 0.00 0.98
4242 7136 3.632145 CGCCCCATTAAAGTTGCTCTAAT 59.368 43.478 0.00 0.00 0.00 1.73
4243 7137 3.013921 CGCCCCATTAAAGTTGCTCTAA 58.986 45.455 0.00 0.00 0.00 2.10
4244 7138 2.237643 TCGCCCCATTAAAGTTGCTCTA 59.762 45.455 0.00 0.00 0.00 2.43
4245 7139 1.004277 TCGCCCCATTAAAGTTGCTCT 59.996 47.619 0.00 0.00 0.00 4.09
4246 7140 1.132453 GTCGCCCCATTAAAGTTGCTC 59.868 52.381 0.00 0.00 0.00 4.26
4247 7141 1.173913 GTCGCCCCATTAAAGTTGCT 58.826 50.000 0.00 0.00 0.00 3.91
4248 7142 0.172578 GGTCGCCCCATTAAAGTTGC 59.827 55.000 0.00 0.00 0.00 4.17
4260 7154 2.822701 GGACGAAATGGGTCGCCC 60.823 66.667 7.87 7.87 45.00 6.13
4261 7155 3.192922 CGGACGAAATGGGTCGCC 61.193 66.667 0.00 0.00 45.00 5.54
4262 7156 3.861263 GCGGACGAAATGGGTCGC 61.861 66.667 0.00 0.00 45.00 5.19
4263 7157 3.192922 GGCGGACGAAATGGGTCG 61.193 66.667 0.00 0.00 46.54 4.79
4264 7158 2.822701 GGGCGGACGAAATGGGTC 60.823 66.667 0.00 0.00 0.00 4.46
4265 7159 4.770874 CGGGCGGACGAAATGGGT 62.771 66.667 0.00 0.00 35.47 4.51
4280 7174 4.020378 CAACCCAAACGGACGCGG 62.020 66.667 12.47 0.00 34.64 6.46
4281 7175 4.020378 CCAACCCAAACGGACGCG 62.020 66.667 3.53 3.53 34.64 6.01
4282 7176 4.337060 GCCAACCCAAACGGACGC 62.337 66.667 0.00 0.00 34.64 5.19
4283 7177 4.020378 CGCCAACCCAAACGGACG 62.020 66.667 0.00 0.00 34.64 4.79
4284 7178 2.903350 ACGCCAACCCAAACGGAC 60.903 61.111 0.00 0.00 34.64 4.79
4285 7179 2.902846 CACGCCAACCCAAACGGA 60.903 61.111 0.00 0.00 34.64 4.69
4286 7180 3.972276 CCACGCCAACCCAAACGG 61.972 66.667 0.00 0.00 37.81 4.44
4287 7181 2.902846 TCCACGCCAACCCAAACG 60.903 61.111 0.00 0.00 0.00 3.60
4288 7182 1.668101 TTGTCCACGCCAACCCAAAC 61.668 55.000 0.00 0.00 0.00 2.93
4289 7183 0.970937 TTTGTCCACGCCAACCCAAA 60.971 50.000 0.00 0.00 0.00 3.28
4290 7184 0.970937 TTTTGTCCACGCCAACCCAA 60.971 50.000 0.00 0.00 0.00 4.12
4291 7185 1.379977 TTTTGTCCACGCCAACCCA 60.380 52.632 0.00 0.00 0.00 4.51
4292 7186 1.362355 CTTTTGTCCACGCCAACCC 59.638 57.895 0.00 0.00 0.00 4.11
4293 7187 0.248866 CACTTTTGTCCACGCCAACC 60.249 55.000 0.00 0.00 0.00 3.77
4294 7188 0.248866 CCACTTTTGTCCACGCCAAC 60.249 55.000 0.00 0.00 0.00 3.77
4295 7189 2.010582 GCCACTTTTGTCCACGCCAA 62.011 55.000 0.00 0.00 0.00 4.52
4296 7190 2.485795 GCCACTTTTGTCCACGCCA 61.486 57.895 0.00 0.00 0.00 5.69
4297 7191 2.335011 GCCACTTTTGTCCACGCC 59.665 61.111 0.00 0.00 0.00 5.68
4298 7192 2.051345 CGCCACTTTTGTCCACGC 60.051 61.111 0.00 0.00 0.00 5.34
4299 7193 2.637025 CCGCCACTTTTGTCCACG 59.363 61.111 0.00 0.00 0.00 4.94
4300 7194 2.335011 GCCGCCACTTTTGTCCAC 59.665 61.111 0.00 0.00 0.00 4.02
4301 7195 2.909965 GGCCGCCACTTTTGTCCA 60.910 61.111 3.91 0.00 0.00 4.02
4302 7196 3.680786 GGGCCGCCACTTTTGTCC 61.681 66.667 12.58 0.00 0.00 4.02
4303 7197 2.494530 TTGGGCCGCCACTTTTGTC 61.495 57.895 12.58 0.00 0.00 3.18
4304 7198 2.443016 TTGGGCCGCCACTTTTGT 60.443 55.556 12.58 0.00 0.00 2.83
4305 7199 2.028925 GTTGGGCCGCCACTTTTG 59.971 61.111 12.58 0.00 0.00 2.44
4306 7200 3.601685 CGTTGGGCCGCCACTTTT 61.602 61.111 12.58 0.00 0.00 2.27
4319 7213 4.676586 GTTTGGGTCGGCGCGTTG 62.677 66.667 8.43 0.00 0.00 4.10
4320 7214 4.922026 AGTTTGGGTCGGCGCGTT 62.922 61.111 8.43 0.00 0.00 4.84
4323 7217 1.862602 ATTTGAGTTTGGGTCGGCGC 61.863 55.000 0.00 0.00 0.00 6.53
4324 7218 0.168128 GATTTGAGTTTGGGTCGGCG 59.832 55.000 0.00 0.00 0.00 6.46
4325 7219 0.168128 CGATTTGAGTTTGGGTCGGC 59.832 55.000 0.00 0.00 0.00 5.54
4326 7220 1.196808 CACGATTTGAGTTTGGGTCGG 59.803 52.381 0.00 0.00 33.75 4.79
4327 7221 1.871039 ACACGATTTGAGTTTGGGTCG 59.129 47.619 0.00 0.00 35.42 4.79
4328 7222 2.225727 GGACACGATTTGAGTTTGGGTC 59.774 50.000 0.00 0.00 0.00 4.46
4329 7223 2.227194 GGACACGATTTGAGTTTGGGT 58.773 47.619 0.00 0.00 0.00 4.51
4330 7224 1.196808 CGGACACGATTTGAGTTTGGG 59.803 52.381 0.00 0.00 44.60 4.12
4331 7225 1.399727 GCGGACACGATTTGAGTTTGG 60.400 52.381 0.00 0.00 44.60 3.28
4332 7226 1.399727 GGCGGACACGATTTGAGTTTG 60.400 52.381 0.00 0.00 44.60 2.93
4333 7227 0.872388 GGCGGACACGATTTGAGTTT 59.128 50.000 0.00 0.00 44.60 2.66
4334 7228 0.953960 GGGCGGACACGATTTGAGTT 60.954 55.000 0.00 0.00 44.60 3.01
4335 7229 1.375523 GGGCGGACACGATTTGAGT 60.376 57.895 0.00 0.00 44.60 3.41
4336 7230 2.452813 CGGGCGGACACGATTTGAG 61.453 63.158 0.00 0.00 44.60 3.02
4337 7231 2.433491 CGGGCGGACACGATTTGA 60.433 61.111 0.00 0.00 44.60 2.69
4338 7232 3.496131 CCGGGCGGACACGATTTG 61.496 66.667 0.00 0.00 44.60 2.32
4364 7258 2.513897 GAGCCGGAAATGGGTCGG 60.514 66.667 5.05 0.00 45.62 4.79
4367 7261 1.937191 ATTTTGAGCCGGAAATGGGT 58.063 45.000 5.05 0.00 43.87 4.51
4368 7262 3.733684 CGTAATTTTGAGCCGGAAATGGG 60.734 47.826 5.05 0.00 0.00 4.00
4369 7263 3.434637 CGTAATTTTGAGCCGGAAATGG 58.565 45.455 5.05 0.00 0.00 3.16
4370 7264 2.851824 GCGTAATTTTGAGCCGGAAATG 59.148 45.455 5.05 0.00 0.00 2.32
4371 7265 2.159296 GGCGTAATTTTGAGCCGGAAAT 60.159 45.455 5.05 0.00 40.17 2.17
4372 7266 1.200484 GGCGTAATTTTGAGCCGGAAA 59.800 47.619 5.05 0.00 40.17 3.13
4373 7267 0.806241 GGCGTAATTTTGAGCCGGAA 59.194 50.000 5.05 0.00 40.17 4.30
4374 7268 2.473457 GGCGTAATTTTGAGCCGGA 58.527 52.632 5.05 0.00 40.17 5.14
4378 7272 3.438360 CATTCCAGGCGTAATTTTGAGC 58.562 45.455 0.00 0.00 0.00 4.26
4379 7273 3.438360 GCATTCCAGGCGTAATTTTGAG 58.562 45.455 0.00 0.00 0.00 3.02
4380 7274 3.502191 GCATTCCAGGCGTAATTTTGA 57.498 42.857 0.00 0.00 0.00 2.69
4465 7359 2.567564 AATAAGACGACCGGTGGCGG 62.568 60.000 14.63 0.00 0.00 6.13
4466 7360 0.738412 AAATAAGACGACCGGTGGCG 60.738 55.000 14.63 14.01 0.00 5.69
4467 7361 2.298411 TAAATAAGACGACCGGTGGC 57.702 50.000 14.63 6.83 0.00 5.01
4468 7362 3.800506 GTCATAAATAAGACGACCGGTGG 59.199 47.826 14.63 15.34 0.00 4.61
4477 7371 4.501921 GTCGGTGGTCGTCATAAATAAGAC 59.498 45.833 0.00 0.00 40.32 3.01
4478 7372 4.158209 TGTCGGTGGTCGTCATAAATAAGA 59.842 41.667 0.00 0.00 40.32 2.10
4479 7373 4.426416 TGTCGGTGGTCGTCATAAATAAG 58.574 43.478 0.00 0.00 40.32 1.73
4480 7374 4.426416 CTGTCGGTGGTCGTCATAAATAA 58.574 43.478 0.00 0.00 36.45 1.40
4481 7375 3.735820 GCTGTCGGTGGTCGTCATAAATA 60.736 47.826 0.00 0.00 36.45 1.40
4482 7376 2.888594 CTGTCGGTGGTCGTCATAAAT 58.111 47.619 0.00 0.00 36.45 1.40
4483 7377 1.670674 GCTGTCGGTGGTCGTCATAAA 60.671 52.381 0.00 0.00 36.45 1.40
4484 7378 0.108992 GCTGTCGGTGGTCGTCATAA 60.109 55.000 0.00 0.00 36.45 1.90
4485 7379 1.509463 GCTGTCGGTGGTCGTCATA 59.491 57.895 0.00 0.00 36.45 2.15
4486 7380 2.261671 GCTGTCGGTGGTCGTCAT 59.738 61.111 0.00 0.00 36.45 3.06
4487 7381 4.337060 CGCTGTCGGTGGTCGTCA 62.337 66.667 0.00 0.00 40.32 4.35
4519 7413 2.058829 AAAAAGGACGCACGCACTGG 62.059 55.000 0.00 0.00 0.00 4.00
4520 7414 1.355210 AAAAAGGACGCACGCACTG 59.645 52.632 0.00 0.00 0.00 3.66
4521 7415 3.821995 AAAAAGGACGCACGCACT 58.178 50.000 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.