Multiple sequence alignment - TraesCS6A01G139100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G139100 chr6A 100.000 2812 0 0 1 2812 111532444 111529633 0.000000e+00 5193.0
1 TraesCS6A01G139100 chr6A 86.750 1200 99 32 704 1889 111449878 111448725 0.000000e+00 1280.0
2 TraesCS6A01G139100 chr6B 90.523 1836 117 17 524 2355 176250319 176248537 0.000000e+00 2374.0
3 TraesCS6A01G139100 chr6B 86.339 1830 167 39 547 2355 176164310 176162543 0.000000e+00 1917.0
4 TraesCS6A01G139100 chr6B 86.331 1829 167 39 548 2355 176188186 176186420 0.000000e+00 1916.0
5 TraesCS6A01G139100 chr6B 85.924 1840 170 44 547 2364 176140099 176138327 0.000000e+00 1881.0
6 TraesCS6A01G139100 chr6B 82.635 1169 120 42 547 1681 176133135 176132016 0.000000e+00 957.0
7 TraesCS6A01G139100 chr6B 86.287 474 46 11 2353 2812 176138310 176137842 5.410000e-137 497.0
8 TraesCS6A01G139100 chr6B 85.897 468 49 9 2358 2812 176240254 176239791 1.510000e-132 483.0
9 TraesCS6A01G139100 chr6B 85.470 468 51 9 2358 2812 176154166 176153703 3.280000e-129 472.0
10 TraesCS6A01G139100 chr6B 85.470 468 51 9 2358 2812 176178136 176177673 3.280000e-129 472.0
11 TraesCS6A01G139100 chr6B 85.256 468 52 9 2358 2812 176215472 176215009 1.530000e-127 466.0
12 TraesCS6A01G139100 chr6B 81.657 169 13 6 377 544 176250759 176250608 1.060000e-24 124.0
13 TraesCS6A01G139100 chrUn 86.448 1830 164 40 547 2355 78290334 78292100 0.000000e+00 1929.0
14 TraesCS6A01G139100 chrUn 86.448 1830 165 39 547 2355 78307152 78308919 0.000000e+00 1929.0
15 TraesCS6A01G139100 chr6D 85.980 1505 128 51 548 2031 91821179 91819737 0.000000e+00 1533.0
16 TraesCS6A01G139100 chr6D 92.888 914 50 6 469 1376 91831294 91830390 0.000000e+00 1314.0
17 TraesCS6A01G139100 chr6D 92.925 735 41 5 1441 2172 91830126 91829400 0.000000e+00 1059.0
18 TraesCS6A01G139100 chr6D 85.445 584 69 10 2236 2812 91823097 91822523 6.710000e-166 593.0
19 TraesCS6A01G139100 chr3D 98.077 52 1 0 312 363 23765739 23765790 1.070000e-14 91.6
20 TraesCS6A01G139100 chr3B 93.220 59 3 1 312 370 755283463 755283520 4.990000e-13 86.1
21 TraesCS6A01G139100 chr3A 96.154 52 2 0 312 363 33152561 33152612 4.990000e-13 86.1
22 TraesCS6A01G139100 chr2B 96.154 52 2 0 312 363 193388211 193388262 4.990000e-13 86.1
23 TraesCS6A01G139100 chr7B 96.078 51 0 2 314 363 19974657 19974706 6.460000e-12 82.4
24 TraesCS6A01G139100 chr5B 92.308 52 2 1 312 363 331675608 331675559 3.890000e-09 73.1
25 TraesCS6A01G139100 chr5B 97.368 38 0 1 328 364 563961523 563961486 2.340000e-06 63.9
26 TraesCS6A01G139100 chr1A 97.143 35 1 0 328 362 587821318 587821284 3.030000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G139100 chr6A 111529633 111532444 2811 True 5193.0 5193 100.0000 1 2812 1 chr6A.!!$R2 2811
1 TraesCS6A01G139100 chr6A 111448725 111449878 1153 True 1280.0 1280 86.7500 704 1889 1 chr6A.!!$R1 1185
2 TraesCS6A01G139100 chr6B 176162543 176164310 1767 True 1917.0 1917 86.3390 547 2355 1 chr6B.!!$R3 1808
3 TraesCS6A01G139100 chr6B 176186420 176188186 1766 True 1916.0 1916 86.3310 548 2355 1 chr6B.!!$R5 1807
4 TraesCS6A01G139100 chr6B 176248537 176250759 2222 True 1249.0 2374 86.0900 377 2355 2 chr6B.!!$R9 1978
5 TraesCS6A01G139100 chr6B 176137842 176140099 2257 True 1189.0 1881 86.1055 547 2812 2 chr6B.!!$R8 2265
6 TraesCS6A01G139100 chr6B 176132016 176133135 1119 True 957.0 957 82.6350 547 1681 1 chr6B.!!$R1 1134
7 TraesCS6A01G139100 chrUn 78290334 78292100 1766 False 1929.0 1929 86.4480 547 2355 1 chrUn.!!$F1 1808
8 TraesCS6A01G139100 chrUn 78307152 78308919 1767 False 1929.0 1929 86.4480 547 2355 1 chrUn.!!$F2 1808
9 TraesCS6A01G139100 chr6D 91829400 91831294 1894 True 1186.5 1314 92.9065 469 2172 2 chr6D.!!$R2 1703
10 TraesCS6A01G139100 chr6D 91819737 91823097 3360 True 1063.0 1533 85.7125 548 2812 2 chr6D.!!$R1 2264

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.035820 TAATGGGTTCGTGTGAGGGC 60.036 55.0 0.0 0.0 0.00 5.19 F
140 141 0.107654 GCTGCCGGTTAGAATCTGGT 60.108 55.0 1.9 0.0 34.14 4.00 F
330 331 0.318614 GGATGTTGTTGTGGCGGTTG 60.319 55.0 0.0 0.0 0.00 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1395 2832 0.254178 AGATGCTCGTTGGATGCCTT 59.746 50.000 0.00 0.0 0.00 4.35 R
1471 3128 1.203237 TCTCCTTCTCTGTCTTGCCCT 60.203 52.381 0.00 0.0 0.00 5.19 R
2197 3865 1.300481 TTGATCAACAAACGGTCGCA 58.700 45.000 3.38 0.0 35.39 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.208527 AAGACCACCACGTCACAGT 58.791 52.632 0.00 0.00 35.07 3.55
19 20 0.179084 AAGACCACCACGTCACAGTG 60.179 55.000 0.00 0.00 41.53 3.66
20 21 2.203015 ACCACCACGTCACAGTGC 60.203 61.111 0.00 0.00 40.59 4.40
21 22 2.108976 CCACCACGTCACAGTGCT 59.891 61.111 0.00 0.00 40.59 4.40
22 23 1.523711 CCACCACGTCACAGTGCTT 60.524 57.895 0.00 0.00 40.59 3.91
23 24 1.498865 CCACCACGTCACAGTGCTTC 61.499 60.000 0.00 0.00 40.59 3.86
24 25 1.227556 ACCACGTCACAGTGCTTCC 60.228 57.895 0.00 0.00 40.59 3.46
25 26 1.227527 CCACGTCACAGTGCTTCCA 60.228 57.895 0.00 0.00 40.59 3.53
26 27 0.813610 CCACGTCACAGTGCTTCCAA 60.814 55.000 0.00 0.00 40.59 3.53
27 28 1.013596 CACGTCACAGTGCTTCCAAA 58.986 50.000 0.00 0.00 35.17 3.28
29 30 1.299541 CGTCACAGTGCTTCCAAAGT 58.700 50.000 0.00 0.00 0.00 2.66
30 31 1.670811 CGTCACAGTGCTTCCAAAGTT 59.329 47.619 0.00 0.00 0.00 2.66
31 32 2.539547 CGTCACAGTGCTTCCAAAGTTG 60.540 50.000 0.00 0.00 0.00 3.16
32 33 1.405105 TCACAGTGCTTCCAAAGTTGC 59.595 47.619 0.00 0.00 0.00 4.17
33 34 0.746659 ACAGTGCTTCCAAAGTTGCC 59.253 50.000 0.00 0.00 0.00 4.52
37 38 0.102120 TGCTTCCAAAGTTGCCAACG 59.898 50.000 1.20 0.00 36.23 4.10
38 39 0.597377 GCTTCCAAAGTTGCCAACGG 60.597 55.000 1.20 0.00 36.23 4.44
55 56 2.571757 GCGAGGGACGACACATCA 59.428 61.111 0.00 0.00 45.77 3.07
56 57 1.517257 GCGAGGGACGACACATCAG 60.517 63.158 0.00 0.00 45.77 2.90
68 69 0.594602 CACATCAGTGGTGTTGCTGG 59.405 55.000 6.21 0.00 42.13 4.85
69 70 0.473755 ACATCAGTGGTGTTGCTGGA 59.526 50.000 2.26 0.00 33.81 3.86
70 71 1.162698 CATCAGTGGTGTTGCTGGAG 58.837 55.000 0.00 0.00 33.81 3.86
71 72 0.037303 ATCAGTGGTGTTGCTGGAGG 59.963 55.000 0.00 0.00 33.81 4.30
72 73 1.053835 TCAGTGGTGTTGCTGGAGGA 61.054 55.000 0.00 0.00 33.81 3.71
73 74 0.604780 CAGTGGTGTTGCTGGAGGAG 60.605 60.000 0.00 0.00 0.00 3.69
75 76 0.603975 GTGGTGTTGCTGGAGGAGTC 60.604 60.000 0.00 0.00 0.00 3.36
77 78 0.321122 GGTGTTGCTGGAGGAGTCAG 60.321 60.000 0.00 0.00 35.49 3.51
80 81 0.248843 GTTGCTGGAGGAGTCAGAGG 59.751 60.000 0.00 0.00 34.36 3.69
81 82 0.178921 TTGCTGGAGGAGTCAGAGGT 60.179 55.000 0.00 0.00 34.36 3.85
83 84 1.077169 TGCTGGAGGAGTCAGAGGTTA 59.923 52.381 0.00 0.00 34.36 2.85
84 85 2.180276 GCTGGAGGAGTCAGAGGTTAA 58.820 52.381 0.00 0.00 34.36 2.01
86 87 3.431486 GCTGGAGGAGTCAGAGGTTAATG 60.431 52.174 0.00 0.00 34.36 1.90
87 88 3.107601 TGGAGGAGTCAGAGGTTAATGG 58.892 50.000 0.00 0.00 0.00 3.16
89 90 3.108376 GAGGAGTCAGAGGTTAATGGGT 58.892 50.000 0.00 0.00 0.00 4.51
90 91 3.519913 GAGGAGTCAGAGGTTAATGGGTT 59.480 47.826 0.00 0.00 0.00 4.11
91 92 3.519913 AGGAGTCAGAGGTTAATGGGTTC 59.480 47.826 0.00 0.00 0.00 3.62
92 93 3.522553 GAGTCAGAGGTTAATGGGTTCG 58.477 50.000 0.00 0.00 0.00 3.95
93 94 2.904434 AGTCAGAGGTTAATGGGTTCGT 59.096 45.455 0.00 0.00 0.00 3.85
96 97 2.742053 CAGAGGTTAATGGGTTCGTGTG 59.258 50.000 0.00 0.00 0.00 3.82
98 99 3.000727 GAGGTTAATGGGTTCGTGTGAG 58.999 50.000 0.00 0.00 0.00 3.51
99 100 2.081462 GGTTAATGGGTTCGTGTGAGG 58.919 52.381 0.00 0.00 0.00 3.86
100 101 2.081462 GTTAATGGGTTCGTGTGAGGG 58.919 52.381 0.00 0.00 0.00 4.30
101 102 0.035820 TAATGGGTTCGTGTGAGGGC 60.036 55.000 0.00 0.00 0.00 5.19
102 103 2.063015 AATGGGTTCGTGTGAGGGCA 62.063 55.000 0.00 0.00 0.00 5.36
103 104 2.358737 GGGTTCGTGTGAGGGCAG 60.359 66.667 0.00 0.00 0.00 4.85
104 105 2.358737 GGTTCGTGTGAGGGCAGG 60.359 66.667 0.00 0.00 0.00 4.85
105 106 2.358737 GTTCGTGTGAGGGCAGGG 60.359 66.667 0.00 0.00 0.00 4.45
131 132 4.028490 CTGGTGGGCTGCCGGTTA 62.028 66.667 13.40 0.00 0.00 2.85
132 133 3.976701 CTGGTGGGCTGCCGGTTAG 62.977 68.421 13.40 3.05 0.00 2.34
133 134 3.712907 GGTGGGCTGCCGGTTAGA 61.713 66.667 13.40 0.00 0.00 2.10
134 135 2.349755 GTGGGCTGCCGGTTAGAA 59.650 61.111 13.40 0.00 0.00 2.10
135 136 1.077716 GTGGGCTGCCGGTTAGAAT 60.078 57.895 13.40 0.00 0.00 2.40
136 137 1.095807 GTGGGCTGCCGGTTAGAATC 61.096 60.000 13.40 0.00 0.00 2.52
137 138 1.271840 TGGGCTGCCGGTTAGAATCT 61.272 55.000 13.40 0.00 0.00 2.40
138 139 0.815615 GGGCTGCCGGTTAGAATCTG 60.816 60.000 13.40 0.00 0.00 2.90
139 140 0.815615 GGCTGCCGGTTAGAATCTGG 60.816 60.000 1.35 0.00 34.70 3.86
140 141 0.107654 GCTGCCGGTTAGAATCTGGT 60.108 55.000 1.90 0.00 34.14 4.00
141 142 1.656652 CTGCCGGTTAGAATCTGGTG 58.343 55.000 1.90 0.00 34.14 4.17
142 143 0.981183 TGCCGGTTAGAATCTGGTGT 59.019 50.000 1.90 0.00 34.14 4.16
143 144 1.338674 TGCCGGTTAGAATCTGGTGTG 60.339 52.381 1.90 0.00 34.14 3.82
144 145 2.012051 GCCGGTTAGAATCTGGTGTGG 61.012 57.143 1.90 0.00 34.14 4.17
145 146 1.278127 CCGGTTAGAATCTGGTGTGGT 59.722 52.381 0.00 0.00 0.00 4.16
148 149 3.446161 CGGTTAGAATCTGGTGTGGTCTA 59.554 47.826 0.00 0.00 0.00 2.59
149 150 4.440250 CGGTTAGAATCTGGTGTGGTCTAG 60.440 50.000 0.00 0.00 0.00 2.43
150 151 4.710375 GGTTAGAATCTGGTGTGGTCTAGA 59.290 45.833 0.00 0.00 0.00 2.43
153 154 2.166907 ATCTGGTGTGGTCTAGAGGG 57.833 55.000 0.00 0.00 0.00 4.30
159 160 0.970937 TGTGGTCTAGAGGGAAGCCG 60.971 60.000 0.00 0.00 0.00 5.52
160 161 1.381327 TGGTCTAGAGGGAAGCCGG 60.381 63.158 0.00 0.00 0.00 6.13
161 162 2.134933 GGTCTAGAGGGAAGCCGGG 61.135 68.421 2.18 0.00 0.00 5.73
162 163 2.134933 GTCTAGAGGGAAGCCGGGG 61.135 68.421 2.18 0.00 0.00 5.73
165 166 3.390671 TAGAGGGAAGCCGGGGAGG 62.391 68.421 2.18 0.00 44.97 4.30
202 203 2.796651 GCGGAGGCAAATGCTCTG 59.203 61.111 5.25 7.21 41.70 3.35
203 204 2.796651 CGGAGGCAAATGCTCTGC 59.203 61.111 5.25 5.51 41.70 4.26
209 210 3.826637 GCAAATGCTCTGCCATGTT 57.173 47.368 0.00 0.00 38.21 2.71
210 211 1.355971 GCAAATGCTCTGCCATGTTG 58.644 50.000 0.00 0.00 38.21 3.33
211 212 2.004583 CAAATGCTCTGCCATGTTGG 57.995 50.000 0.00 0.00 41.55 3.77
213 214 0.974010 AATGCTCTGCCATGTTGGGG 60.974 55.000 0.00 0.00 38.19 4.96
214 215 2.036256 GCTCTGCCATGTTGGGGT 59.964 61.111 0.00 0.00 38.19 4.95
215 216 1.607467 GCTCTGCCATGTTGGGGTT 60.607 57.895 0.00 0.00 38.19 4.11
216 217 0.323360 GCTCTGCCATGTTGGGGTTA 60.323 55.000 0.00 0.00 38.19 2.85
220 221 1.545582 CTGCCATGTTGGGGTTACAAG 59.454 52.381 0.00 0.00 38.19 3.16
221 222 0.894835 GCCATGTTGGGGTTACAAGG 59.105 55.000 0.00 0.00 38.19 3.61
222 223 0.894835 CCATGTTGGGGTTACAAGGC 59.105 55.000 0.00 0.00 32.67 4.35
223 224 1.626686 CATGTTGGGGTTACAAGGCA 58.373 50.000 0.00 0.00 0.00 4.75
224 225 1.545582 CATGTTGGGGTTACAAGGCAG 59.454 52.381 0.00 0.00 0.00 4.85
225 226 0.553819 TGTTGGGGTTACAAGGCAGT 59.446 50.000 0.00 0.00 0.00 4.40
226 227 0.958822 GTTGGGGTTACAAGGCAGTG 59.041 55.000 0.00 0.00 0.00 3.66
227 228 0.825840 TTGGGGTTACAAGGCAGTGC 60.826 55.000 6.55 6.55 0.00 4.40
228 229 1.074951 GGGGTTACAAGGCAGTGCT 59.925 57.895 16.11 0.00 0.00 4.40
229 230 0.960861 GGGGTTACAAGGCAGTGCTC 60.961 60.000 16.11 5.23 0.00 4.26
230 231 1.298859 GGGTTACAAGGCAGTGCTCG 61.299 60.000 16.11 6.25 0.00 5.03
231 232 1.497722 GTTACAAGGCAGTGCTCGC 59.502 57.895 16.11 0.00 0.00 5.03
239 240 3.429141 CAGTGCTCGCCTGCCAAG 61.429 66.667 0.00 0.00 0.00 3.61
249 250 2.679716 CTGCCAAGGGGGAAGGAG 59.320 66.667 0.00 0.00 38.90 3.69
251 252 4.803908 GCCAAGGGGGAAGGAGCG 62.804 72.222 0.00 0.00 40.01 5.03
252 253 4.115199 CCAAGGGGGAAGGAGCGG 62.115 72.222 0.00 0.00 40.01 5.52
253 254 4.115199 CAAGGGGGAAGGAGCGGG 62.115 72.222 0.00 0.00 0.00 6.13
279 280 3.622826 CGGGTGTCAGGGACGGTT 61.623 66.667 0.00 0.00 34.95 4.44
280 281 2.346365 GGGTGTCAGGGACGGTTC 59.654 66.667 0.00 0.00 34.95 3.62
281 282 2.214920 GGGTGTCAGGGACGGTTCT 61.215 63.158 0.00 0.00 34.95 3.01
282 283 0.901580 GGGTGTCAGGGACGGTTCTA 60.902 60.000 0.00 0.00 34.95 2.10
283 284 0.531200 GGTGTCAGGGACGGTTCTAG 59.469 60.000 0.00 0.00 34.95 2.43
284 285 0.531200 GTGTCAGGGACGGTTCTAGG 59.469 60.000 0.00 0.00 34.95 3.02
286 287 1.203087 TGTCAGGGACGGTTCTAGGAA 60.203 52.381 0.00 0.00 34.95 3.36
289 290 2.176889 CAGGGACGGTTCTAGGAAGAA 58.823 52.381 0.00 0.00 39.47 2.52
290 291 2.166664 CAGGGACGGTTCTAGGAAGAAG 59.833 54.545 0.00 0.00 42.40 2.85
291 292 2.042706 AGGGACGGTTCTAGGAAGAAGA 59.957 50.000 0.00 0.00 42.40 2.87
292 293 3.032459 GGGACGGTTCTAGGAAGAAGAT 58.968 50.000 0.00 0.00 42.40 2.40
293 294 3.181474 GGGACGGTTCTAGGAAGAAGATG 60.181 52.174 0.00 0.00 42.40 2.90
294 295 3.700038 GGACGGTTCTAGGAAGAAGATGA 59.300 47.826 0.00 0.00 42.40 2.92
295 296 4.159879 GGACGGTTCTAGGAAGAAGATGAA 59.840 45.833 0.00 0.00 42.40 2.57
296 297 5.074584 ACGGTTCTAGGAAGAAGATGAAC 57.925 43.478 0.00 0.00 42.40 3.18
297 298 4.527038 ACGGTTCTAGGAAGAAGATGAACA 59.473 41.667 0.00 0.00 42.40 3.18
298 299 5.011738 ACGGTTCTAGGAAGAAGATGAACAA 59.988 40.000 0.00 0.00 42.40 2.83
299 300 6.109359 CGGTTCTAGGAAGAAGATGAACAAT 58.891 40.000 0.00 0.00 42.40 2.71
300 301 6.036517 CGGTTCTAGGAAGAAGATGAACAATG 59.963 42.308 0.00 0.00 42.40 2.82
301 302 6.881602 GGTTCTAGGAAGAAGATGAACAATGT 59.118 38.462 0.00 0.00 42.40 2.71
304 305 9.823647 TTCTAGGAAGAAGATGAACAATGTATC 57.176 33.333 0.00 0.00 36.80 2.24
305 306 9.206690 TCTAGGAAGAAGATGAACAATGTATCT 57.793 33.333 0.00 0.00 32.80 1.98
308 309 8.986991 AGGAAGAAGATGAACAATGTATCTAGT 58.013 33.333 0.00 0.00 31.30 2.57
312 313 8.865090 AGAAGATGAACAATGTATCTAGTAGGG 58.135 37.037 0.00 0.00 31.30 3.53
314 315 8.964533 AGATGAACAATGTATCTAGTAGGGAT 57.035 34.615 0.00 0.00 29.82 3.85
315 316 8.811017 AGATGAACAATGTATCTAGTAGGGATG 58.189 37.037 0.00 0.00 29.82 3.51
316 317 7.914427 TGAACAATGTATCTAGTAGGGATGT 57.086 36.000 0.00 0.00 0.00 3.06
317 318 8.319057 TGAACAATGTATCTAGTAGGGATGTT 57.681 34.615 0.00 1.72 0.00 2.71
318 319 8.204160 TGAACAATGTATCTAGTAGGGATGTTG 58.796 37.037 0.00 1.51 0.00 3.33
320 321 8.090788 ACAATGTATCTAGTAGGGATGTTGTT 57.909 34.615 0.00 0.00 29.43 2.83
321 322 7.987458 ACAATGTATCTAGTAGGGATGTTGTTG 59.013 37.037 0.00 0.00 29.43 3.33
323 324 6.873997 TGTATCTAGTAGGGATGTTGTTGTG 58.126 40.000 0.00 0.00 0.00 3.33
324 325 4.819105 TCTAGTAGGGATGTTGTTGTGG 57.181 45.455 0.00 0.00 0.00 4.17
325 326 2.200373 AGTAGGGATGTTGTTGTGGC 57.800 50.000 0.00 0.00 0.00 5.01
326 327 0.802494 GTAGGGATGTTGTTGTGGCG 59.198 55.000 0.00 0.00 0.00 5.69
327 328 0.322098 TAGGGATGTTGTTGTGGCGG 60.322 55.000 0.00 0.00 0.00 6.13
329 330 1.460273 GGGATGTTGTTGTGGCGGTT 61.460 55.000 0.00 0.00 0.00 4.44
330 331 0.318614 GGATGTTGTTGTGGCGGTTG 60.319 55.000 0.00 0.00 0.00 3.77
331 332 0.939106 GATGTTGTTGTGGCGGTTGC 60.939 55.000 0.00 0.00 41.71 4.17
333 334 1.140804 GTTGTTGTGGCGGTTGCTT 59.859 52.632 0.00 0.00 42.25 3.91
336 337 1.323412 TGTTGTGGCGGTTGCTTTAT 58.677 45.000 0.00 0.00 42.25 1.40
337 338 2.505405 TGTTGTGGCGGTTGCTTTATA 58.495 42.857 0.00 0.00 42.25 0.98
340 341 4.102649 GTTGTGGCGGTTGCTTTATAATC 58.897 43.478 0.00 0.00 42.25 1.75
342 343 4.771903 TGTGGCGGTTGCTTTATAATCTA 58.228 39.130 0.00 0.00 42.25 1.98
344 345 5.648526 TGTGGCGGTTGCTTTATAATCTAAA 59.351 36.000 0.00 0.00 42.25 1.85
345 346 6.183360 TGTGGCGGTTGCTTTATAATCTAAAG 60.183 38.462 1.30 1.30 42.25 1.85
353 354 5.548406 GCTTTATAATCTAAAGCGGGGAGA 58.452 41.667 12.40 0.00 46.31 3.71
354 355 5.995897 GCTTTATAATCTAAAGCGGGGAGAA 59.004 40.000 12.40 0.00 46.31 2.87
355 356 6.485648 GCTTTATAATCTAAAGCGGGGAGAAA 59.514 38.462 12.40 0.00 46.31 2.52
357 358 2.711978 ATCTAAAGCGGGGAGAAACC 57.288 50.000 0.00 0.00 38.08 3.27
384 385 1.859574 CATAAAAGGGGTGGGGAGGAT 59.140 52.381 0.00 0.00 0.00 3.24
393 394 2.080536 TGGGGAGGATGATGGCCAG 61.081 63.158 13.05 0.00 0.00 4.85
396 397 1.228184 GGAGGATGATGGCCAGCAG 60.228 63.158 29.74 0.00 31.55 4.24
415 416 3.191371 GCAGGAGTTGGATTGAACGAAAT 59.809 43.478 0.00 0.00 0.00 2.17
419 420 4.332819 GGAGTTGGATTGAACGAAATCGAT 59.667 41.667 10.16 0.00 43.02 3.59
433 434 2.183478 ATCGATGGAAAGCACACACA 57.817 45.000 0.00 0.00 0.00 3.72
436 437 2.685388 TCGATGGAAAGCACACACAAAA 59.315 40.909 0.00 0.00 0.00 2.44
533 534 1.466167 CAGTGACAAAAGAGGCGGATG 59.534 52.381 0.00 0.00 0.00 3.51
577 1950 5.277297 CGGTATTTTAATCATCTGCTCGCAA 60.277 40.000 0.00 0.00 0.00 4.85
602 1976 3.626028 GTCAGAAAAATTGACGCCTGT 57.374 42.857 0.00 0.00 36.01 4.00
612 1986 0.464036 TGACGCCTGTATGGATGGTC 59.536 55.000 0.00 0.00 38.35 4.02
760 2139 6.935741 ACCAACAAAAGGCCTTTAAAAATC 57.064 33.333 30.59 0.00 31.63 2.17
851 2234 3.005897 AGCATCACCCATGACGTATACTC 59.994 47.826 0.56 0.00 37.79 2.59
852 2235 3.861131 GCATCACCCATGACGTATACTCC 60.861 52.174 0.56 0.00 37.79 3.85
857 2240 3.773119 ACCCATGACGTATACTCCAGTTT 59.227 43.478 0.56 0.00 0.00 2.66
869 2252 7.924412 CGTATACTCCAGTTTGTATTACATGGT 59.076 37.037 12.48 1.09 32.42 3.55
959 2391 1.714794 AAACGATCTCAGCCTTCACG 58.285 50.000 0.00 0.00 0.00 4.35
1240 2677 1.532437 AGTACATCGACGACGTGTTCA 59.468 47.619 4.58 2.58 40.69 3.18
1281 2718 2.681064 CCCGTGGACCCCTACGAA 60.681 66.667 4.50 0.00 42.54 3.85
1355 2792 7.921786 TTATCCTCAATTGGTTGAACTAGTG 57.078 36.000 5.42 0.00 43.39 2.74
1357 2794 3.191371 CCTCAATTGGTTGAACTAGTGGC 59.809 47.826 5.42 0.00 43.39 5.01
1369 2806 1.207329 ACTAGTGGCATCCGTTCCTTC 59.793 52.381 0.00 0.00 0.00 3.46
1371 2808 1.002624 GTGGCATCCGTTCCTTCCA 60.003 57.895 0.00 0.00 0.00 3.53
1373 2810 0.331278 TGGCATCCGTTCCTTCCATT 59.669 50.000 0.00 0.00 0.00 3.16
1374 2811 1.272425 TGGCATCCGTTCCTTCCATTT 60.272 47.619 0.00 0.00 0.00 2.32
1375 2812 2.025793 TGGCATCCGTTCCTTCCATTTA 60.026 45.455 0.00 0.00 0.00 1.40
1376 2813 2.357952 GGCATCCGTTCCTTCCATTTAC 59.642 50.000 0.00 0.00 0.00 2.01
1377 2814 3.013921 GCATCCGTTCCTTCCATTTACA 58.986 45.455 0.00 0.00 0.00 2.41
1378 2815 3.065371 GCATCCGTTCCTTCCATTTACAG 59.935 47.826 0.00 0.00 0.00 2.74
1379 2816 4.261801 CATCCGTTCCTTCCATTTACAGT 58.738 43.478 0.00 0.00 0.00 3.55
1380 2817 5.424757 CATCCGTTCCTTCCATTTACAGTA 58.575 41.667 0.00 0.00 0.00 2.74
1381 2818 5.080969 TCCGTTCCTTCCATTTACAGTAG 57.919 43.478 0.00 0.00 0.00 2.57
1382 2819 4.773674 TCCGTTCCTTCCATTTACAGTAGA 59.226 41.667 0.00 0.00 0.00 2.59
1383 2820 5.424252 TCCGTTCCTTCCATTTACAGTAGAT 59.576 40.000 0.00 0.00 0.00 1.98
1384 2821 6.608405 TCCGTTCCTTCCATTTACAGTAGATA 59.392 38.462 0.00 0.00 0.00 1.98
1385 2822 7.289317 TCCGTTCCTTCCATTTACAGTAGATAT 59.711 37.037 0.00 0.00 0.00 1.63
1386 2823 8.582437 CCGTTCCTTCCATTTACAGTAGATATA 58.418 37.037 0.00 0.00 0.00 0.86
1421 2870 0.443869 CCAACGAGCATCTTTGACCG 59.556 55.000 0.00 0.00 46.12 4.79
1426 2875 3.187700 ACGAGCATCTTTGACCGTTATC 58.812 45.455 0.00 0.00 31.47 1.75
1471 3128 0.251297 CCATGGAGGCAGTGGTTGAA 60.251 55.000 5.56 0.00 0.00 2.69
1485 3142 1.072331 GGTTGAAGGGCAAGACAGAGA 59.928 52.381 0.00 0.00 37.12 3.10
1640 3297 1.067142 GTGCTGTCGTGGATGAAGGTA 60.067 52.381 0.00 0.00 0.00 3.08
1789 3446 4.379243 CGCCAAGGCACGAGAGGT 62.379 66.667 12.19 0.00 42.06 3.85
1814 3474 1.409227 CTGCAGCGTCTAACTGAGCG 61.409 60.000 0.00 0.00 37.32 5.03
1827 3487 0.671472 CTGAGCGAGCACACATCCAA 60.671 55.000 0.00 0.00 0.00 3.53
1880 3544 4.219033 GTTTGTTCGGTTGCTTGATGTAG 58.781 43.478 0.00 0.00 0.00 2.74
1883 3547 4.242475 TGTTCGGTTGCTTGATGTAGTAG 58.758 43.478 0.00 0.00 0.00 2.57
1902 3566 6.912951 AGTAGTGTACCAGTAACTCATGTT 57.087 37.500 0.00 0.00 39.98 2.71
2012 3677 7.963532 TGTATTAGTTGAGGTTCTCTTTCTGT 58.036 34.615 0.00 0.00 0.00 3.41
2021 3686 5.995446 AGGTTCTCTTTCTGTTTCAAGAGT 58.005 37.500 8.41 0.00 44.43 3.24
2022 3687 5.819901 AGGTTCTCTTTCTGTTTCAAGAGTG 59.180 40.000 8.41 0.00 44.43 3.51
2023 3688 5.586643 GGTTCTCTTTCTGTTTCAAGAGTGT 59.413 40.000 8.41 0.00 44.43 3.55
2024 3689 6.457528 GGTTCTCTTTCTGTTTCAAGAGTGTG 60.458 42.308 8.41 0.00 44.43 3.82
2025 3690 5.734720 TCTCTTTCTGTTTCAAGAGTGTGT 58.265 37.500 8.41 0.00 44.43 3.72
2027 3692 6.313905 TCTCTTTCTGTTTCAAGAGTGTGTTC 59.686 38.462 8.41 0.00 44.43 3.18
2028 3693 5.937540 TCTTTCTGTTTCAAGAGTGTGTTCA 59.062 36.000 0.00 0.00 0.00 3.18
2199 3867 7.306983 GCTTTGGAAATGCAGATATATTTGTGC 60.307 37.037 8.13 8.13 45.34 4.57
2217 3885 1.876799 TGCGACCGTTTGTTGATCAAT 59.123 42.857 12.12 0.00 35.84 2.57
2218 3886 2.095969 TGCGACCGTTTGTTGATCAATC 60.096 45.455 12.12 6.28 35.84 2.67
2219 3887 2.095969 GCGACCGTTTGTTGATCAATCA 60.096 45.455 12.12 8.83 35.84 2.57
2220 3888 3.426159 GCGACCGTTTGTTGATCAATCAT 60.426 43.478 12.12 0.00 36.56 2.45
2221 3889 4.090729 CGACCGTTTGTTGATCAATCATG 58.909 43.478 12.12 4.32 36.56 3.07
2222 3890 3.836949 ACCGTTTGTTGATCAATCATGC 58.163 40.909 12.12 0.00 36.56 4.06
2223 3891 3.255395 ACCGTTTGTTGATCAATCATGCA 59.745 39.130 12.12 1.25 36.56 3.96
2224 3892 4.082081 ACCGTTTGTTGATCAATCATGCAT 60.082 37.500 12.12 0.00 36.56 3.96
2264 3932 5.705441 TCGTAAGATGTTTCAAAAGAGGCAT 59.295 36.000 0.00 0.00 45.01 4.40
2271 3939 4.940046 TGTTTCAAAAGAGGCATGCAAAAA 59.060 33.333 21.36 0.63 0.00 1.94
2273 3941 4.134379 TCAAAAGAGGCATGCAAAAACA 57.866 36.364 21.36 0.00 0.00 2.83
2274 3942 4.121317 TCAAAAGAGGCATGCAAAAACAG 58.879 39.130 21.36 4.27 0.00 3.16
2278 3946 2.694628 AGAGGCATGCAAAAACAGTCAA 59.305 40.909 21.36 0.00 0.00 3.18
2292 3960 7.530426 AAAACAGTCAAATTAGCCTCAATCT 57.470 32.000 0.00 0.00 0.00 2.40
2295 3963 7.187824 ACAGTCAAATTAGCCTCAATCTAGA 57.812 36.000 0.00 0.00 0.00 2.43
2296 3964 7.624549 ACAGTCAAATTAGCCTCAATCTAGAA 58.375 34.615 0.00 0.00 0.00 2.10
2297 3965 8.103305 ACAGTCAAATTAGCCTCAATCTAGAAA 58.897 33.333 0.00 0.00 0.00 2.52
2333 4001 5.215252 TGAAAGACTTCTCAATCGAGGTT 57.785 39.130 0.00 0.00 39.95 3.50
2355 4023 1.691196 TTGGTCAGCCACCTCAAAAG 58.309 50.000 4.14 0.00 46.98 2.27
2421 4115 2.486982 CCAAACCTCTCAATGCAGAGTG 59.513 50.000 3.17 1.24 38.69 3.51
2432 4126 4.036734 TCAATGCAGAGTGGAAAACAAGTC 59.963 41.667 0.00 0.00 0.00 3.01
2434 4128 1.334149 GCAGAGTGGAAAACAAGTCGC 60.334 52.381 0.00 0.00 0.00 5.19
2438 4132 1.146485 TGGAAAACAAGTCGCGGGA 59.854 52.632 6.13 0.00 0.00 5.14
2465 4159 5.358298 AATTTTGTAGCAGTCGAAAGTCC 57.642 39.130 0.00 0.00 0.00 3.85
2475 4169 4.454504 GCAGTCGAAAGTCCAGGAAAATAA 59.545 41.667 0.00 0.00 0.00 1.40
2503 4197 6.978343 TGGTGTAATTTACCAAAGAGATCG 57.022 37.500 10.78 0.00 44.79 3.69
2526 4220 4.508551 AATGCCTCTCAACCATACATCA 57.491 40.909 0.00 0.00 0.00 3.07
2537 4231 8.873144 TCTCAACCATACATCAATGATCAGATA 58.127 33.333 0.09 0.00 0.00 1.98
2548 4242 9.708092 CATCAATGATCAGATAACAGACATACT 57.292 33.333 0.09 0.00 0.00 2.12
2581 4275 4.383173 CATCACATTACTGCCTAGCATGA 58.617 43.478 0.00 0.00 38.13 3.07
2585 4279 4.577693 CACATTACTGCCTAGCATGATTGT 59.422 41.667 0.00 0.00 38.13 2.71
2594 4289 2.315925 AGCATGATTGTGGTAGGTCG 57.684 50.000 0.00 0.00 0.00 4.79
2595 4290 1.134401 AGCATGATTGTGGTAGGTCGG 60.134 52.381 0.00 0.00 0.00 4.79
2597 4292 2.279741 CATGATTGTGGTAGGTCGGTG 58.720 52.381 0.00 0.00 0.00 4.94
2628 4324 3.691609 CCAATCTCTTAGAGCAACCCAAC 59.308 47.826 4.03 0.00 0.00 3.77
2662 4358 2.745884 TCCAGCCGCATCCGTTTG 60.746 61.111 0.00 0.00 0.00 2.93
2665 4361 3.737172 AGCCGCATCCGTTTGTGC 61.737 61.111 0.00 0.00 37.97 4.57
2670 4366 4.459331 CATCCGTTTGTGCCCGCG 62.459 66.667 0.00 0.00 0.00 6.46
2727 4423 4.677584 TCCCATTTTCTGTTCGTTTTGTG 58.322 39.130 0.00 0.00 0.00 3.33
2734 4430 1.837747 CTGTTCGTTTTGTGTGCGTTC 59.162 47.619 0.00 0.00 0.00 3.95
2738 4434 0.041663 CGTTTTGTGTGCGTTCGGAT 60.042 50.000 0.00 0.00 0.00 4.18
2744 4440 1.066787 TGTGTGCGTTCGGATCCATTA 60.067 47.619 13.41 0.00 0.00 1.90
2746 4442 2.032894 GTGTGCGTTCGGATCCATTATG 60.033 50.000 13.41 2.68 0.00 1.90
2747 4443 2.210116 GTGCGTTCGGATCCATTATGT 58.790 47.619 13.41 0.00 0.00 2.29
2748 4444 2.221055 GTGCGTTCGGATCCATTATGTC 59.779 50.000 13.41 0.00 0.00 3.06
2749 4445 1.455786 GCGTTCGGATCCATTATGTCG 59.544 52.381 13.41 7.24 0.00 4.35
2750 4446 2.860971 GCGTTCGGATCCATTATGTCGA 60.861 50.000 13.41 0.00 0.00 4.20
2752 4459 3.799963 CGTTCGGATCCATTATGTCGAAA 59.200 43.478 13.41 0.00 38.15 3.46
2759 4466 6.238621 CGGATCCATTATGTCGAAAATTTGGA 60.239 38.462 13.41 9.32 36.53 3.53
2762 4469 7.880160 TCCATTATGTCGAAAATTTGGATCT 57.120 32.000 0.00 0.00 0.00 2.75
2763 4470 8.972458 TCCATTATGTCGAAAATTTGGATCTA 57.028 30.769 0.00 0.00 0.00 1.98
2776 4483 9.883142 AAAATTTGGATCTAAAACAGACACAAA 57.117 25.926 8.42 0.00 42.07 2.83
2778 4485 6.385649 TTGGATCTAAAACAGACACAAACC 57.614 37.500 0.00 0.00 35.62 3.27
2780 4487 4.083484 GGATCTAAAACAGACACAAACCGG 60.083 45.833 0.00 0.00 35.62 5.28
2781 4488 4.139859 TCTAAAACAGACACAAACCGGA 57.860 40.909 9.46 0.00 0.00 5.14
2783 4490 3.708563 AAAACAGACACAAACCGGATG 57.291 42.857 9.46 9.74 0.00 3.51
2784 4491 2.341846 AACAGACACAAACCGGATGT 57.658 45.000 9.46 10.51 0.00 3.06
2787 4494 3.020984 ACAGACACAAACCGGATGTTTT 58.979 40.909 9.46 1.98 44.80 2.43
2799 4506 1.468914 GGATGTTTTTGCGTCCTCCTC 59.531 52.381 0.00 0.00 40.49 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.179084 CACTGTGACGTGGTGGTCTT 60.179 55.000 0.32 0.00 37.81 3.01
1 2 1.441729 CACTGTGACGTGGTGGTCT 59.558 57.895 0.32 0.00 37.81 3.85
2 3 2.244651 GCACTGTGACGTGGTGGTC 61.245 63.158 12.86 0.00 35.47 4.02
3 4 2.203015 GCACTGTGACGTGGTGGT 60.203 61.111 12.86 0.00 35.47 4.16
4 5 1.498865 GAAGCACTGTGACGTGGTGG 61.499 60.000 12.86 0.00 44.08 4.61
5 6 1.498865 GGAAGCACTGTGACGTGGTG 61.499 60.000 12.86 6.05 44.08 4.17
6 7 1.227556 GGAAGCACTGTGACGTGGT 60.228 57.895 12.86 6.48 46.54 4.16
7 8 0.813610 TTGGAAGCACTGTGACGTGG 60.814 55.000 12.86 0.00 35.47 4.94
8 9 1.003545 CTTTGGAAGCACTGTGACGTG 60.004 52.381 12.86 3.77 37.94 4.49
10 11 1.299541 ACTTTGGAAGCACTGTGACG 58.700 50.000 12.86 0.00 0.00 4.35
12 13 1.405105 GCAACTTTGGAAGCACTGTGA 59.595 47.619 12.86 0.00 0.00 3.58
13 14 1.536709 GGCAACTTTGGAAGCACTGTG 60.537 52.381 2.76 2.76 0.00 3.66
14 15 0.746659 GGCAACTTTGGAAGCACTGT 59.253 50.000 0.00 0.00 0.00 3.55
15 16 0.746063 TGGCAACTTTGGAAGCACTG 59.254 50.000 0.00 0.00 37.61 3.66
16 17 1.136891 GTTGGCAACTTTGGAAGCACT 59.863 47.619 22.66 0.00 37.61 4.40
17 18 1.570813 GTTGGCAACTTTGGAAGCAC 58.429 50.000 22.66 0.00 37.61 4.40
18 19 0.102120 CGTTGGCAACTTTGGAAGCA 59.898 50.000 26.26 0.00 37.61 3.91
19 20 0.597377 CCGTTGGCAACTTTGGAAGC 60.597 55.000 26.26 0.00 37.61 3.86
20 21 3.568093 CCGTTGGCAACTTTGGAAG 57.432 52.632 26.26 10.07 37.61 3.46
33 34 4.351938 TGTCGTCCCTCGCCGTTG 62.352 66.667 0.00 0.00 39.67 4.10
37 38 2.202756 GATGTGTCGTCCCTCGCC 60.203 66.667 0.00 0.00 39.67 5.54
38 39 1.517257 CTGATGTGTCGTCCCTCGC 60.517 63.158 0.00 0.00 39.67 5.03
40 41 0.108615 CCACTGATGTGTCGTCCCTC 60.109 60.000 0.00 0.00 42.34 4.30
41 42 0.832135 ACCACTGATGTGTCGTCCCT 60.832 55.000 0.00 0.00 42.34 4.20
42 43 0.670546 CACCACTGATGTGTCGTCCC 60.671 60.000 0.00 0.00 42.34 4.46
43 44 0.033504 ACACCACTGATGTGTCGTCC 59.966 55.000 0.00 0.00 43.15 4.79
44 45 1.526887 CAACACCACTGATGTGTCGTC 59.473 52.381 7.26 0.00 45.78 4.20
45 46 1.581934 CAACACCACTGATGTGTCGT 58.418 50.000 7.26 0.00 45.78 4.34
46 47 0.235665 GCAACACCACTGATGTGTCG 59.764 55.000 7.26 0.00 45.78 4.35
47 48 1.265095 CAGCAACACCACTGATGTGTC 59.735 52.381 7.26 0.00 45.78 3.67
50 51 0.473755 TCCAGCAACACCACTGATGT 59.526 50.000 0.00 0.00 35.90 3.06
51 52 1.162698 CTCCAGCAACACCACTGATG 58.837 55.000 0.00 0.00 35.90 3.07
52 53 0.037303 CCTCCAGCAACACCACTGAT 59.963 55.000 0.00 0.00 35.90 2.90
53 54 1.053835 TCCTCCAGCAACACCACTGA 61.054 55.000 0.00 0.00 35.90 3.41
54 55 0.604780 CTCCTCCAGCAACACCACTG 60.605 60.000 0.00 0.00 0.00 3.66
55 56 1.056700 ACTCCTCCAGCAACACCACT 61.057 55.000 0.00 0.00 0.00 4.00
56 57 0.603975 GACTCCTCCAGCAACACCAC 60.604 60.000 0.00 0.00 0.00 4.16
58 59 0.321122 CTGACTCCTCCAGCAACACC 60.321 60.000 0.00 0.00 0.00 4.16
60 61 0.972134 CTCTGACTCCTCCAGCAACA 59.028 55.000 0.00 0.00 0.00 3.33
61 62 0.248843 CCTCTGACTCCTCCAGCAAC 59.751 60.000 0.00 0.00 0.00 4.17
62 63 0.178921 ACCTCTGACTCCTCCAGCAA 60.179 55.000 0.00 0.00 0.00 3.91
63 64 0.178921 AACCTCTGACTCCTCCAGCA 60.179 55.000 0.00 0.00 0.00 4.41
64 65 1.853963 TAACCTCTGACTCCTCCAGC 58.146 55.000 0.00 0.00 0.00 4.85
65 66 3.133721 CCATTAACCTCTGACTCCTCCAG 59.866 52.174 0.00 0.00 0.00 3.86
68 69 3.108376 ACCCATTAACCTCTGACTCCTC 58.892 50.000 0.00 0.00 0.00 3.71
69 70 3.207044 ACCCATTAACCTCTGACTCCT 57.793 47.619 0.00 0.00 0.00 3.69
70 71 3.679083 CGAACCCATTAACCTCTGACTCC 60.679 52.174 0.00 0.00 0.00 3.85
71 72 3.056035 ACGAACCCATTAACCTCTGACTC 60.056 47.826 0.00 0.00 0.00 3.36
72 73 2.904434 ACGAACCCATTAACCTCTGACT 59.096 45.455 0.00 0.00 0.00 3.41
73 74 3.000727 CACGAACCCATTAACCTCTGAC 58.999 50.000 0.00 0.00 0.00 3.51
75 76 2.742053 CACACGAACCCATTAACCTCTG 59.258 50.000 0.00 0.00 0.00 3.35
77 78 3.000727 CTCACACGAACCCATTAACCTC 58.999 50.000 0.00 0.00 0.00 3.85
80 81 2.081462 CCCTCACACGAACCCATTAAC 58.919 52.381 0.00 0.00 0.00 2.01
81 82 1.612199 GCCCTCACACGAACCCATTAA 60.612 52.381 0.00 0.00 0.00 1.40
83 84 1.303317 GCCCTCACACGAACCCATT 60.303 57.895 0.00 0.00 0.00 3.16
84 85 2.351276 GCCCTCACACGAACCCAT 59.649 61.111 0.00 0.00 0.00 4.00
86 87 2.358737 CTGCCCTCACACGAACCC 60.359 66.667 0.00 0.00 0.00 4.11
87 88 2.358737 CCTGCCCTCACACGAACC 60.359 66.667 0.00 0.00 0.00 3.62
89 90 3.636231 CCCCTGCCCTCACACGAA 61.636 66.667 0.00 0.00 0.00 3.85
114 115 3.976701 CTAACCGGCAGCCCACCAG 62.977 68.421 5.63 0.00 0.00 4.00
115 116 4.028490 CTAACCGGCAGCCCACCA 62.028 66.667 5.63 0.00 0.00 4.17
116 117 2.552231 ATTCTAACCGGCAGCCCACC 62.552 60.000 5.63 0.00 0.00 4.61
117 118 1.077716 ATTCTAACCGGCAGCCCAC 60.078 57.895 5.63 0.00 0.00 4.61
119 120 0.815615 CAGATTCTAACCGGCAGCCC 60.816 60.000 5.63 0.00 0.00 5.19
120 121 0.815615 CCAGATTCTAACCGGCAGCC 60.816 60.000 0.00 0.00 0.00 4.85
121 122 0.107654 ACCAGATTCTAACCGGCAGC 60.108 55.000 0.00 0.00 0.00 5.25
122 123 1.066143 ACACCAGATTCTAACCGGCAG 60.066 52.381 0.00 0.00 0.00 4.85
124 125 1.369625 CACACCAGATTCTAACCGGC 58.630 55.000 0.00 0.00 0.00 6.13
125 126 1.278127 ACCACACCAGATTCTAACCGG 59.722 52.381 0.00 0.00 0.00 5.28
126 127 2.233922 AGACCACACCAGATTCTAACCG 59.766 50.000 0.00 0.00 0.00 4.44
127 128 3.983044 AGACCACACCAGATTCTAACC 57.017 47.619 0.00 0.00 0.00 2.85
128 129 5.163499 CCTCTAGACCACACCAGATTCTAAC 60.163 48.000 0.00 0.00 0.00 2.34
130 131 4.537751 CCTCTAGACCACACCAGATTCTA 58.462 47.826 0.00 0.00 0.00 2.10
131 132 3.370104 CCTCTAGACCACACCAGATTCT 58.630 50.000 0.00 0.00 0.00 2.40
132 133 2.432510 CCCTCTAGACCACACCAGATTC 59.567 54.545 0.00 0.00 0.00 2.52
133 134 2.044492 TCCCTCTAGACCACACCAGATT 59.956 50.000 0.00 0.00 0.00 2.40
134 135 1.646447 TCCCTCTAGACCACACCAGAT 59.354 52.381 0.00 0.00 0.00 2.90
135 136 1.081481 TCCCTCTAGACCACACCAGA 58.919 55.000 0.00 0.00 0.00 3.86
136 137 1.827969 CTTCCCTCTAGACCACACCAG 59.172 57.143 0.00 0.00 0.00 4.00
137 138 1.938585 CTTCCCTCTAGACCACACCA 58.061 55.000 0.00 0.00 0.00 4.17
138 139 0.537653 GCTTCCCTCTAGACCACACC 59.462 60.000 0.00 0.00 0.00 4.16
139 140 0.537653 GGCTTCCCTCTAGACCACAC 59.462 60.000 0.00 0.00 0.00 3.82
140 141 0.970937 CGGCTTCCCTCTAGACCACA 60.971 60.000 0.00 0.00 0.00 4.17
141 142 1.677637 CCGGCTTCCCTCTAGACCAC 61.678 65.000 0.00 0.00 0.00 4.16
142 143 1.381327 CCGGCTTCCCTCTAGACCA 60.381 63.158 0.00 0.00 0.00 4.02
143 144 2.134933 CCCGGCTTCCCTCTAGACC 61.135 68.421 0.00 0.00 0.00 3.85
144 145 2.134933 CCCCGGCTTCCCTCTAGAC 61.135 68.421 0.00 0.00 0.00 2.59
145 146 2.282446 CCCCGGCTTCCCTCTAGA 59.718 66.667 0.00 0.00 0.00 2.43
148 149 4.806339 CCTCCCCGGCTTCCCTCT 62.806 72.222 0.00 0.00 0.00 3.69
183 184 3.880846 GAGCATTTGCCTCCGCCG 61.881 66.667 0.00 0.00 43.38 6.46
184 185 2.439156 AGAGCATTTGCCTCCGCC 60.439 61.111 0.00 0.00 43.38 6.13
185 186 2.796651 CAGAGCATTTGCCTCCGC 59.203 61.111 0.00 0.00 43.38 5.54
186 187 2.796651 GCAGAGCATTTGCCTCCG 59.203 61.111 0.00 0.00 43.38 4.63
191 192 1.355971 CAACATGGCAGAGCATTTGC 58.644 50.000 0.00 0.00 40.80 3.68
192 193 1.404986 CCCAACATGGCAGAGCATTTG 60.405 52.381 0.00 0.00 35.79 2.32
193 194 0.899720 CCCAACATGGCAGAGCATTT 59.100 50.000 0.00 0.00 35.79 2.32
194 195 0.974010 CCCCAACATGGCAGAGCATT 60.974 55.000 0.00 0.00 35.79 3.56
195 196 1.380785 CCCCAACATGGCAGAGCAT 60.381 57.895 0.00 0.00 35.79 3.79
196 197 2.036098 CCCCAACATGGCAGAGCA 59.964 61.111 0.00 0.00 35.79 4.26
198 199 1.271871 TGTAACCCCAACATGGCAGAG 60.272 52.381 0.00 0.00 35.79 3.35
199 200 0.774276 TGTAACCCCAACATGGCAGA 59.226 50.000 0.00 0.00 35.79 4.26
200 201 1.545582 CTTGTAACCCCAACATGGCAG 59.454 52.381 0.00 0.00 35.79 4.85
202 203 0.894835 CCTTGTAACCCCAACATGGC 59.105 55.000 0.00 0.00 35.95 4.40
203 204 0.894835 GCCTTGTAACCCCAACATGG 59.105 55.000 0.00 4.30 42.30 3.66
204 205 1.545582 CTGCCTTGTAACCCCAACATG 59.454 52.381 0.00 0.00 0.00 3.21
205 206 1.146982 ACTGCCTTGTAACCCCAACAT 59.853 47.619 0.00 0.00 0.00 2.71
207 208 0.958822 CACTGCCTTGTAACCCCAAC 59.041 55.000 0.00 0.00 0.00 3.77
209 210 1.228429 GCACTGCCTTGTAACCCCA 60.228 57.895 0.00 0.00 0.00 4.96
210 211 0.960861 GAGCACTGCCTTGTAACCCC 60.961 60.000 0.00 0.00 0.00 4.95
211 212 1.298859 CGAGCACTGCCTTGTAACCC 61.299 60.000 0.00 0.00 0.00 4.11
213 214 1.497722 GCGAGCACTGCCTTGTAAC 59.502 57.895 0.00 0.00 0.00 2.50
214 215 3.966215 GCGAGCACTGCCTTGTAA 58.034 55.556 0.00 0.00 0.00 2.41
222 223 3.429141 CTTGGCAGGCGAGCACTG 61.429 66.667 0.00 8.52 38.95 3.66
223 224 4.711949 CCTTGGCAGGCGAGCACT 62.712 66.667 5.64 0.00 35.83 4.40
230 231 4.766632 CCTTCCCCCTTGGCAGGC 62.767 72.222 0.00 0.00 39.20 4.85
231 232 2.941025 TCCTTCCCCCTTGGCAGG 60.941 66.667 0.00 0.00 40.45 4.85
232 233 2.679716 CTCCTTCCCCCTTGGCAG 59.320 66.667 0.00 0.00 0.00 4.85
233 234 3.661648 GCTCCTTCCCCCTTGGCA 61.662 66.667 0.00 0.00 0.00 4.92
234 235 4.803908 CGCTCCTTCCCCCTTGGC 62.804 72.222 0.00 0.00 0.00 4.52
235 236 4.115199 CCGCTCCTTCCCCCTTGG 62.115 72.222 0.00 0.00 0.00 3.61
236 237 4.115199 CCCGCTCCTTCCCCCTTG 62.115 72.222 0.00 0.00 0.00 3.61
263 264 0.901580 TAGAACCGTCCCTGACACCC 60.902 60.000 0.00 0.00 32.09 4.61
264 265 0.531200 CTAGAACCGTCCCTGACACC 59.469 60.000 0.00 0.00 32.09 4.16
265 266 0.531200 CCTAGAACCGTCCCTGACAC 59.469 60.000 0.00 0.00 32.09 3.67
266 267 0.406750 TCCTAGAACCGTCCCTGACA 59.593 55.000 0.00 0.00 32.09 3.58
267 268 1.477295 CTTCCTAGAACCGTCCCTGAC 59.523 57.143 0.00 0.00 0.00 3.51
268 269 1.356738 TCTTCCTAGAACCGTCCCTGA 59.643 52.381 0.00 0.00 0.00 3.86
270 271 2.042706 TCTTCTTCCTAGAACCGTCCCT 59.957 50.000 0.00 0.00 35.49 4.20
271 272 2.454538 TCTTCTTCCTAGAACCGTCCC 58.545 52.381 0.00 0.00 35.49 4.46
272 273 3.700038 TCATCTTCTTCCTAGAACCGTCC 59.300 47.826 0.00 0.00 35.49 4.79
273 274 4.985538 TCATCTTCTTCCTAGAACCGTC 57.014 45.455 0.00 0.00 35.49 4.79
276 277 6.881602 ACATTGTTCATCTTCTTCCTAGAACC 59.118 38.462 0.00 0.00 35.49 3.62
277 278 7.913674 ACATTGTTCATCTTCTTCCTAGAAC 57.086 36.000 0.00 0.00 35.49 3.01
279 280 9.206690 AGATACATTGTTCATCTTCTTCCTAGA 57.793 33.333 0.00 0.00 0.00 2.43
282 283 8.986991 ACTAGATACATTGTTCATCTTCTTCCT 58.013 33.333 7.25 0.00 31.60 3.36
286 287 8.865090 CCCTACTAGATACATTGTTCATCTTCT 58.135 37.037 7.25 0.00 31.60 2.85
289 290 8.811017 CATCCCTACTAGATACATTGTTCATCT 58.189 37.037 0.00 7.15 33.66 2.90
290 291 8.589338 ACATCCCTACTAGATACATTGTTCATC 58.411 37.037 0.00 0.00 0.00 2.92
291 292 8.497910 ACATCCCTACTAGATACATTGTTCAT 57.502 34.615 0.00 0.00 0.00 2.57
292 293 7.914427 ACATCCCTACTAGATACATTGTTCA 57.086 36.000 0.00 0.00 0.00 3.18
293 294 8.204836 ACAACATCCCTACTAGATACATTGTTC 58.795 37.037 0.00 0.00 0.00 3.18
294 295 8.090788 ACAACATCCCTACTAGATACATTGTT 57.909 34.615 0.00 0.00 0.00 2.83
295 296 7.676683 ACAACATCCCTACTAGATACATTGT 57.323 36.000 0.00 0.00 0.00 2.71
296 297 7.987458 ACAACAACATCCCTACTAGATACATTG 59.013 37.037 0.00 0.00 0.00 2.82
297 298 7.987458 CACAACAACATCCCTACTAGATACATT 59.013 37.037 0.00 0.00 0.00 2.71
298 299 7.419057 CCACAACAACATCCCTACTAGATACAT 60.419 40.741 0.00 0.00 0.00 2.29
299 300 6.127168 CCACAACAACATCCCTACTAGATACA 60.127 42.308 0.00 0.00 0.00 2.29
300 301 6.281405 CCACAACAACATCCCTACTAGATAC 58.719 44.000 0.00 0.00 0.00 2.24
301 302 5.163343 GCCACAACAACATCCCTACTAGATA 60.163 44.000 0.00 0.00 0.00 1.98
304 305 3.270877 GCCACAACAACATCCCTACTAG 58.729 50.000 0.00 0.00 0.00 2.57
305 306 2.354303 CGCCACAACAACATCCCTACTA 60.354 50.000 0.00 0.00 0.00 1.82
306 307 1.610624 CGCCACAACAACATCCCTACT 60.611 52.381 0.00 0.00 0.00 2.57
308 309 0.322098 CCGCCACAACAACATCCCTA 60.322 55.000 0.00 0.00 0.00 3.53
310 311 1.460273 AACCGCCACAACAACATCCC 61.460 55.000 0.00 0.00 0.00 3.85
311 312 0.318614 CAACCGCCACAACAACATCC 60.319 55.000 0.00 0.00 0.00 3.51
312 313 0.939106 GCAACCGCCACAACAACATC 60.939 55.000 0.00 0.00 0.00 3.06
314 315 1.599606 AAGCAACCGCCACAACAACA 61.600 50.000 0.00 0.00 39.83 3.33
315 316 0.459411 AAAGCAACCGCCACAACAAC 60.459 50.000 0.00 0.00 39.83 3.32
316 317 1.103803 TAAAGCAACCGCCACAACAA 58.896 45.000 0.00 0.00 39.83 2.83
317 318 1.323412 ATAAAGCAACCGCCACAACA 58.677 45.000 0.00 0.00 39.83 3.33
318 319 3.562567 TTATAAAGCAACCGCCACAAC 57.437 42.857 0.00 0.00 39.83 3.32
320 321 3.616219 AGATTATAAAGCAACCGCCACA 58.384 40.909 0.00 0.00 39.83 4.17
321 322 5.744666 TTAGATTATAAAGCAACCGCCAC 57.255 39.130 0.00 0.00 39.83 5.01
331 332 7.041303 GGTTTCTCCCCGCTTTAGATTATAAAG 60.041 40.741 6.46 6.46 37.53 1.85
333 334 6.293698 GGTTTCTCCCCGCTTTAGATTATAA 58.706 40.000 0.00 0.00 0.00 0.98
336 337 4.146745 GGTTTCTCCCCGCTTTAGATTA 57.853 45.455 0.00 0.00 0.00 1.75
337 338 3.000684 GGTTTCTCCCCGCTTTAGATT 57.999 47.619 0.00 0.00 0.00 2.40
359 360 2.455163 TCCCCACCCCTTTTATGGAAAA 59.545 45.455 0.00 0.00 35.33 2.29
360 361 2.043801 CTCCCCACCCCTTTTATGGAAA 59.956 50.000 0.00 0.00 35.33 3.13
361 362 1.643811 CTCCCCACCCCTTTTATGGAA 59.356 52.381 0.00 0.00 35.33 3.53
362 363 1.304891 CTCCCCACCCCTTTTATGGA 58.695 55.000 0.00 0.00 35.33 3.41
363 364 0.261696 CCTCCCCACCCCTTTTATGG 59.738 60.000 0.00 0.00 0.00 2.74
364 365 1.304891 TCCTCCCCACCCCTTTTATG 58.695 55.000 0.00 0.00 0.00 1.90
365 366 1.859574 CATCCTCCCCACCCCTTTTAT 59.140 52.381 0.00 0.00 0.00 1.40
367 368 0.479589 TCATCCTCCCCACCCCTTTT 60.480 55.000 0.00 0.00 0.00 2.27
368 369 0.254299 ATCATCCTCCCCACCCCTTT 60.254 55.000 0.00 0.00 0.00 3.11
369 370 0.995675 CATCATCCTCCCCACCCCTT 60.996 60.000 0.00 0.00 0.00 3.95
371 372 2.464403 CCATCATCCTCCCCACCCC 61.464 68.421 0.00 0.00 0.00 4.95
372 373 3.138728 GCCATCATCCTCCCCACCC 62.139 68.421 0.00 0.00 0.00 4.61
373 374 2.517919 GCCATCATCCTCCCCACC 59.482 66.667 0.00 0.00 0.00 4.61
374 375 2.349100 CTGGCCATCATCCTCCCCAC 62.349 65.000 5.51 0.00 0.00 4.61
375 376 2.044280 TGGCCATCATCCTCCCCA 59.956 61.111 0.00 0.00 0.00 4.96
384 385 1.001764 CAACTCCTGCTGGCCATCA 60.002 57.895 5.51 7.75 0.00 3.07
393 394 1.808411 TCGTTCAATCCAACTCCTGC 58.192 50.000 0.00 0.00 0.00 4.85
396 397 3.682858 TCGATTTCGTTCAATCCAACTCC 59.317 43.478 0.00 0.00 40.80 3.85
415 416 1.960417 TTGTGTGTGCTTTCCATCGA 58.040 45.000 0.00 0.00 0.00 3.59
436 437 4.576463 CACCTACTCAACAGTTGCTCTTTT 59.424 41.667 8.58 0.00 33.62 2.27
440 441 2.224305 ACCACCTACTCAACAGTTGCTC 60.224 50.000 8.58 0.00 33.62 4.26
441 442 1.768870 ACCACCTACTCAACAGTTGCT 59.231 47.619 8.58 0.00 33.62 3.91
443 444 2.368875 AGGACCACCTACTCAACAGTTG 59.631 50.000 6.99 6.99 45.83 3.16
445 446 2.400467 AGGACCACCTACTCAACAGT 57.600 50.000 0.00 0.00 45.83 3.55
492 493 5.426509 ACTGAATGTGGAGATTGTATCTGGA 59.573 40.000 0.00 0.00 40.38 3.86
493 494 5.526479 CACTGAATGTGGAGATTGTATCTGG 59.474 44.000 0.00 0.00 42.68 3.86
533 534 4.746611 ACCGTAGCTACAAGTTACAACAAC 59.253 41.667 23.21 0.00 32.32 3.32
577 1950 3.243401 GGCGTCAATTTTTCTGACTTGGT 60.243 43.478 1.88 0.00 40.90 3.67
597 1971 0.471617 AGCAGACCATCCATACAGGC 59.528 55.000 0.00 0.00 37.29 4.85
602 1976 0.752658 CCGTCAGCAGACCATCCATA 59.247 55.000 3.39 0.00 41.87 2.74
612 1986 2.037136 CAAGCCCTTCCGTCAGCAG 61.037 63.158 0.00 0.00 0.00 4.24
691 2065 4.461431 TGGAGATGCGTCTGTCTTAACTTA 59.539 41.667 14.59 0.00 33.97 2.24
760 2139 0.172578 TCCTTGTAGTGCGTCGATGG 59.827 55.000 6.79 0.00 0.00 3.51
791 2174 2.969238 CGTGATGCCTGGGCGATC 60.969 66.667 7.14 10.92 45.51 3.69
851 2234 9.778741 ATATAGTGACCATGTAATACAAACTGG 57.221 33.333 9.34 9.34 0.00 4.00
869 2252 9.929180 GAGGCATATCAACTGTTTATATAGTGA 57.071 33.333 6.85 0.00 0.00 3.41
959 2391 0.166597 CGATGGATGTGTGTGTGTGC 59.833 55.000 0.00 0.00 0.00 4.57
1268 2705 3.751246 CGCGTTCGTAGGGGTCCA 61.751 66.667 0.00 0.00 0.00 4.02
1355 2792 1.474330 AAATGGAAGGAACGGATGCC 58.526 50.000 0.00 0.00 0.00 4.40
1357 2794 4.261801 ACTGTAAATGGAAGGAACGGATG 58.738 43.478 0.00 0.00 0.00 3.51
1384 2821 8.893727 GCTCGTTGGATGCCTTAATAATAATAT 58.106 33.333 0.00 0.00 0.00 1.28
1385 2822 7.880713 TGCTCGTTGGATGCCTTAATAATAATA 59.119 33.333 0.00 0.00 0.00 0.98
1386 2823 6.714810 TGCTCGTTGGATGCCTTAATAATAAT 59.285 34.615 0.00 0.00 0.00 1.28
1387 2824 6.058833 TGCTCGTTGGATGCCTTAATAATAA 58.941 36.000 0.00 0.00 0.00 1.40
1388 2825 5.616270 TGCTCGTTGGATGCCTTAATAATA 58.384 37.500 0.00 0.00 0.00 0.98
1389 2826 4.460263 TGCTCGTTGGATGCCTTAATAAT 58.540 39.130 0.00 0.00 0.00 1.28
1390 2827 3.879998 TGCTCGTTGGATGCCTTAATAA 58.120 40.909 0.00 0.00 0.00 1.40
1391 2828 3.552132 TGCTCGTTGGATGCCTTAATA 57.448 42.857 0.00 0.00 0.00 0.98
1392 2829 2.418368 TGCTCGTTGGATGCCTTAAT 57.582 45.000 0.00 0.00 0.00 1.40
1395 2832 0.254178 AGATGCTCGTTGGATGCCTT 59.746 50.000 0.00 0.00 0.00 4.35
1398 2835 1.739466 TCAAAGATGCTCGTTGGATGC 59.261 47.619 10.23 0.00 36.68 3.91
1399 2836 2.096496 GGTCAAAGATGCTCGTTGGATG 59.904 50.000 10.23 0.00 36.68 3.51
1471 3128 1.203237 TCTCCTTCTCTGTCTTGCCCT 60.203 52.381 0.00 0.00 0.00 5.19
1485 3142 3.182152 TCTTTCCCTCGGATTTCTCCTT 58.818 45.455 0.00 0.00 39.65 3.36
1571 3228 4.382320 CCGTCCCCGCCGAAGAAA 62.382 66.667 0.00 0.00 0.00 2.52
1640 3297 4.003788 CCGGACAGCACCTCGGTT 62.004 66.667 0.00 0.00 37.92 4.44
1700 3357 1.968540 GCTGAAGTGCTCCACCCAC 60.969 63.158 0.00 0.00 34.49 4.61
1711 3368 4.421479 CGTCGAGCCCGCTGAAGT 62.421 66.667 0.00 0.00 35.37 3.01
1868 3532 5.245301 ACTGGTACACTACTACATCAAGCAA 59.755 40.000 0.00 0.00 0.00 3.91
1880 3544 6.453092 ACAACATGAGTTACTGGTACACTAC 58.547 40.000 0.00 0.00 35.85 2.73
1883 3547 4.689345 GGACAACATGAGTTACTGGTACAC 59.311 45.833 0.00 0.00 35.85 2.90
1949 3614 2.818751 TGGGAACTCCACACAAAAGT 57.181 45.000 0.00 0.00 41.46 2.66
1971 3636 9.611284 CAACTAATACATGCACGCATTATAAAT 57.389 29.630 0.72 0.00 33.90 1.40
2012 3677 5.957842 AACTGTTGAACACACTCTTGAAA 57.042 34.783 0.00 0.00 0.00 2.69
2176 3844 6.039159 TCGCACAAATATATCTGCATTTCCAA 59.961 34.615 9.47 0.00 0.00 3.53
2197 3865 1.300481 TTGATCAACAAACGGTCGCA 58.700 45.000 3.38 0.00 35.39 5.10
2199 3867 3.804518 TGATTGATCAACAAACGGTCG 57.195 42.857 11.07 0.00 42.03 4.79
2222 3890 4.668576 ACGAACTACAACAGCATGAATG 57.331 40.909 0.00 0.00 39.69 2.67
2223 3891 6.163476 TCTTACGAACTACAACAGCATGAAT 58.837 36.000 0.00 0.00 39.69 2.57
2224 3892 5.534407 TCTTACGAACTACAACAGCATGAA 58.466 37.500 0.00 0.00 39.69 2.57
2242 3910 5.574443 GCATGCCTCTTTTGAAACATCTTAC 59.426 40.000 6.36 0.00 0.00 2.34
2248 3916 3.815856 TTGCATGCCTCTTTTGAAACA 57.184 38.095 16.68 0.00 0.00 2.83
2264 3932 5.163468 TGAGGCTAATTTGACTGTTTTTGCA 60.163 36.000 0.00 0.00 0.00 4.08
2271 3939 7.187824 TCTAGATTGAGGCTAATTTGACTGT 57.812 36.000 0.00 0.00 0.00 3.55
2273 3941 9.520515 TTTTTCTAGATTGAGGCTAATTTGACT 57.479 29.630 0.00 0.00 0.00 3.41
2305 3973 7.041780 CCTCGATTGAGAAGTCTTTCAAGAAAA 60.042 37.037 11.89 0.00 45.57 2.29
2355 4023 9.869757 AGGTGTTGGTGCTATTTTTATTTTATC 57.130 29.630 0.00 0.00 0.00 1.75
2397 4091 0.251742 TGCATTGAGAGGTTTGGGGG 60.252 55.000 0.00 0.00 0.00 5.40
2421 4115 1.572941 GTCCCGCGACTTGTTTTCC 59.427 57.895 8.23 0.00 35.99 3.13
2432 4126 3.120130 TGCTACAAAATTTAAGTCCCGCG 60.120 43.478 0.00 0.00 0.00 6.46
2434 4128 5.622770 ACTGCTACAAAATTTAAGTCCCG 57.377 39.130 0.00 0.00 0.00 5.14
2438 4132 7.927048 ACTTTCGACTGCTACAAAATTTAAGT 58.073 30.769 0.00 0.00 0.00 2.24
2490 4184 4.162320 AGAGGCATTTCGATCTCTTTGGTA 59.838 41.667 0.00 0.00 33.28 3.25
2491 4185 3.054802 AGAGGCATTTCGATCTCTTTGGT 60.055 43.478 0.00 0.00 33.28 3.67
2493 4187 4.186926 TGAGAGGCATTTCGATCTCTTTG 58.813 43.478 11.58 0.00 39.15 2.77
2501 4195 2.787473 ATGGTTGAGAGGCATTTCGA 57.213 45.000 0.00 0.00 0.00 3.71
2503 4197 4.883585 TGATGTATGGTTGAGAGGCATTTC 59.116 41.667 0.00 0.00 0.00 2.17
2526 4220 8.255111 TCCAGTATGTCTGTTATCTGATCATT 57.745 34.615 0.00 0.00 42.19 2.57
2550 4244 5.126061 AGGCAGTAATGTGATGGATTGTTTC 59.874 40.000 0.00 0.00 0.00 2.78
2564 4258 4.023450 CCACAATCATGCTAGGCAGTAATG 60.023 45.833 0.00 0.00 43.65 1.90
2566 4260 3.054434 ACCACAATCATGCTAGGCAGTAA 60.054 43.478 0.00 0.00 43.65 2.24
2571 4265 2.158755 ACCTACCACAATCATGCTAGGC 60.159 50.000 0.00 0.00 30.08 3.93
2581 4275 1.354101 TTCCACCGACCTACCACAAT 58.646 50.000 0.00 0.00 0.00 2.71
2585 4279 3.414269 GAAATTTTCCACCGACCTACCA 58.586 45.455 0.00 0.00 0.00 3.25
2648 4344 3.737172 GCACAAACGGATGCGGCT 61.737 61.111 12.44 0.00 30.97 5.52
2694 4390 1.908619 GAAAATGGGAATGGGTGCCTT 59.091 47.619 0.00 0.00 38.91 4.35
2695 4391 1.079323 AGAAAATGGGAATGGGTGCCT 59.921 47.619 0.00 0.00 38.91 4.75
2696 4392 1.207811 CAGAAAATGGGAATGGGTGCC 59.792 52.381 0.00 0.00 38.51 5.01
2697 4393 1.901833 ACAGAAAATGGGAATGGGTGC 59.098 47.619 0.00 0.00 0.00 5.01
2727 4423 2.210116 ACATAATGGATCCGAACGCAC 58.790 47.619 7.39 0.00 0.00 5.34
2734 4430 5.914635 CCAAATTTTCGACATAATGGATCCG 59.085 40.000 7.39 0.00 0.00 4.18
2738 4434 7.880160 AGATCCAAATTTTCGACATAATGGA 57.120 32.000 9.95 9.95 39.79 3.41
2744 4440 8.792633 TCTGTTTTAGATCCAAATTTTCGACAT 58.207 29.630 0.00 0.00 0.00 3.06
2746 4442 8.073768 TGTCTGTTTTAGATCCAAATTTTCGAC 58.926 33.333 0.00 0.00 37.83 4.20
2747 4443 8.073768 GTGTCTGTTTTAGATCCAAATTTTCGA 58.926 33.333 0.00 0.00 37.83 3.71
2748 4444 7.860373 TGTGTCTGTTTTAGATCCAAATTTTCG 59.140 33.333 0.00 0.00 37.83 3.46
2749 4445 9.528018 TTGTGTCTGTTTTAGATCCAAATTTTC 57.472 29.630 0.00 0.00 37.83 2.29
2750 4446 9.883142 TTTGTGTCTGTTTTAGATCCAAATTTT 57.117 25.926 0.00 0.00 37.83 1.82
2752 4459 7.926018 GGTTTGTGTCTGTTTTAGATCCAAATT 59.074 33.333 0.00 0.00 38.72 1.82
2759 4466 4.710324 TCCGGTTTGTGTCTGTTTTAGAT 58.290 39.130 0.00 0.00 37.83 1.98
2762 4469 4.200874 ACATCCGGTTTGTGTCTGTTTTA 58.799 39.130 11.21 0.00 0.00 1.52
2763 4470 3.020984 ACATCCGGTTTGTGTCTGTTTT 58.979 40.909 11.21 0.00 0.00 2.43
2766 4473 2.341846 AACATCCGGTTTGTGTCTGT 57.658 45.000 12.45 0.00 35.82 3.41
2776 4483 0.536460 AGGACGCAAAAACATCCGGT 60.536 50.000 0.00 0.00 36.28 5.28
2778 4485 0.168128 GGAGGACGCAAAAACATCCG 59.832 55.000 0.00 0.00 36.28 4.18
2780 4487 1.128692 CGAGGAGGACGCAAAAACATC 59.871 52.381 0.00 0.00 0.00 3.06
2781 4488 1.156736 CGAGGAGGACGCAAAAACAT 58.843 50.000 0.00 0.00 0.00 2.71
2783 4490 0.511653 GACGAGGAGGACGCAAAAAC 59.488 55.000 0.00 0.00 0.00 2.43
2784 4491 0.601841 GGACGAGGAGGACGCAAAAA 60.602 55.000 0.00 0.00 0.00 1.94
2787 4494 3.744719 CGGACGAGGAGGACGCAA 61.745 66.667 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.