Multiple sequence alignment - TraesCS6A01G138900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G138900 chr6A 100.000 4095 0 0 1860 5954 110351274 110347180 0.000000e+00 7563.0
1 TraesCS6A01G138900 chr6A 100.000 1436 0 0 1 1436 110353133 110351698 0.000000e+00 2652.0
2 TraesCS6A01G138900 chr6A 90.196 51 5 0 3081 3131 27172791 27172741 3.850000e-07 67.6
3 TraesCS6A01G138900 chr6A 100.000 30 0 0 4337 4366 110348769 110348740 8.340000e-04 56.5
4 TraesCS6A01G138900 chr6A 100.000 30 0 0 4365 4394 110348797 110348768 8.340000e-04 56.5
5 TraesCS6A01G138900 chr6D 93.706 1573 61 4 2794 4366 91569870 91568336 0.000000e+00 2322.0
6 TraesCS6A01G138900 chr6D 94.160 1541 47 16 4365 5870 91568365 91566833 0.000000e+00 2307.0
7 TraesCS6A01G138900 chr6D 84.142 1154 122 19 1 1129 91572174 91571057 0.000000e+00 1061.0
8 TraesCS6A01G138900 chr6D 85.480 427 40 9 1016 1436 91570795 91570385 5.520000e-115 425.0
9 TraesCS6A01G138900 chr6D 93.927 247 12 2 2107 2352 91570112 91569868 2.620000e-98 370.0
10 TraesCS6A01G138900 chr6D 92.070 227 18 0 1158 1384 91570800 91570574 2.680000e-83 320.0
11 TraesCS6A01G138900 chr6D 84.892 139 18 2 2115 2252 17262039 17262175 2.890000e-28 137.0
12 TraesCS6A01G138900 chr6D 88.679 106 9 3 1864 1969 91570205 91570103 6.260000e-25 126.0
13 TraesCS6A01G138900 chr6D 88.608 79 9 0 1306 1384 91570802 91570724 4.910000e-16 97.1
14 TraesCS6A01G138900 chr6D 100.000 36 0 0 5919 5954 91566728 91566693 3.850000e-07 67.6
15 TraesCS6A01G138900 chr6B 91.832 1567 47 20 4365 5870 175727400 175725854 0.000000e+00 2109.0
16 TraesCS6A01G138900 chr6B 85.783 1449 146 26 1 1436 175730989 175729588 0.000000e+00 1480.0
17 TraesCS6A01G138900 chr6B 96.028 856 28 3 3514 4366 175728223 175727371 0.000000e+00 1387.0
18 TraesCS6A01G138900 chr6B 95.261 633 22 2 2883 3515 175729007 175728383 0.000000e+00 996.0
19 TraesCS6A01G138900 chr6B 92.045 440 34 1 2353 2792 717300681 717301119 8.480000e-173 617.0
20 TraesCS6A01G138900 chr6B 93.173 249 12 3 2107 2352 175729310 175729064 1.580000e-95 361.0
21 TraesCS6A01G138900 chr5A 92.534 442 32 1 2354 2795 329338046 329337606 3.030000e-177 632.0
22 TraesCS6A01G138900 chr5D 80.496 846 140 16 1 833 395771541 395770708 5.070000e-175 625.0
23 TraesCS6A01G138900 chr5D 91.403 442 37 1 2353 2794 259923383 259922943 6.600000e-169 604.0
24 TraesCS6A01G138900 chr2B 80.699 772 117 20 75 840 230592748 230592003 6.690000e-159 571.0
25 TraesCS6A01G138900 chr2B 81.749 526 80 9 1 517 598461902 598462420 5.520000e-115 425.0
26 TraesCS6A01G138900 chr7D 78.972 856 150 22 2 840 296479496 296478654 1.870000e-154 556.0
27 TraesCS6A01G138900 chr7D 81.395 645 94 20 5 636 395967036 395967667 2.480000e-138 503.0
28 TraesCS6A01G138900 chr7D 94.954 218 11 0 2528 2745 12736309 12736526 5.710000e-90 342.0
29 TraesCS6A01G138900 chr7D 89.326 178 11 2 2354 2531 12735856 12736025 3.610000e-52 217.0
30 TraesCS6A01G138900 chr7A 87.973 449 41 7 2349 2796 688546802 688547238 8.850000e-143 518.0
31 TraesCS6A01G138900 chr7A 93.151 219 13 2 2531 2747 12311804 12312022 2.680000e-83 320.0
32 TraesCS6A01G138900 chr7A 90.230 174 14 1 2353 2526 12311337 12311507 2.160000e-54 224.0
33 TraesCS6A01G138900 chr2D 81.269 646 87 19 1 637 509120607 509121227 5.360000e-135 492.0
34 TraesCS6A01G138900 chr2D 80.388 515 84 8 1 504 353542309 353542817 5.630000e-100 375.0
35 TraesCS6A01G138900 chr2D 86.806 144 16 2 2115 2257 14769658 14769799 2.220000e-34 158.0
36 TraesCS6A01G138900 chr2D 90.110 91 8 1 3043 3133 271509160 271509071 3.770000e-22 117.0
37 TraesCS6A01G138900 chr3A 89.109 404 26 10 2353 2755 17603299 17603685 2.490000e-133 486.0
38 TraesCS6A01G138900 chr3A 87.248 149 16 3 2107 2254 343232451 343232597 3.690000e-37 167.0
39 TraesCS6A01G138900 chr1D 79.416 651 102 21 2 637 232436362 232436995 1.190000e-116 431.0
40 TraesCS6A01G138900 chr1D 85.401 137 17 2 2115 2250 438009244 438009378 8.050000e-29 139.0
41 TraesCS6A01G138900 chr4A 92.481 266 20 0 2528 2793 724853034 724852769 1.210000e-101 381.0
42 TraesCS6A01G138900 chr4A 88.298 188 13 5 2349 2531 724853501 724853318 3.610000e-52 217.0
43 TraesCS6A01G138900 chr4A 86.232 138 16 3 2115 2251 632152180 632152045 4.810000e-31 147.0
44 TraesCS6A01G138900 chrUn 86.755 151 16 3 2105 2253 166451 166599 1.330000e-36 165.0
45 TraesCS6A01G138900 chrUn 78.333 120 13 6 3019 3131 96466391 96466278 1.390000e-06 65.8
46 TraesCS6A01G138900 chr4B 77.316 313 33 15 2362 2650 272067641 272067343 3.720000e-32 150.0
47 TraesCS6A01G138900 chr1A 85.507 138 17 3 2115 2251 428532475 428532340 2.240000e-29 141.0
48 TraesCS6A01G138900 chr1A 82.143 84 12 3 3047 3129 226433524 226433605 1.070000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G138900 chr6A 110347180 110353133 5953 True 2582.000000 7563 100.000000 1 5954 4 chr6A.!!$R2 5953
1 TraesCS6A01G138900 chr6D 91566693 91572174 5481 True 788.411111 2322 91.196889 1 5954 9 chr6D.!!$R1 5953
2 TraesCS6A01G138900 chr6B 175725854 175730989 5135 True 1266.600000 2109 92.415400 1 5870 5 chr6B.!!$R1 5869
3 TraesCS6A01G138900 chr5D 395770708 395771541 833 True 625.000000 625 80.496000 1 833 1 chr5D.!!$R2 832
4 TraesCS6A01G138900 chr2B 230592003 230592748 745 True 571.000000 571 80.699000 75 840 1 chr2B.!!$R1 765
5 TraesCS6A01G138900 chr2B 598461902 598462420 518 False 425.000000 425 81.749000 1 517 1 chr2B.!!$F1 516
6 TraesCS6A01G138900 chr7D 296478654 296479496 842 True 556.000000 556 78.972000 2 840 1 chr7D.!!$R1 838
7 TraesCS6A01G138900 chr7D 395967036 395967667 631 False 503.000000 503 81.395000 5 636 1 chr7D.!!$F1 631
8 TraesCS6A01G138900 chr7D 12735856 12736526 670 False 279.500000 342 92.140000 2354 2745 2 chr7D.!!$F2 391
9 TraesCS6A01G138900 chr7A 12311337 12312022 685 False 272.000000 320 91.690500 2353 2747 2 chr7A.!!$F2 394
10 TraesCS6A01G138900 chr2D 509120607 509121227 620 False 492.000000 492 81.269000 1 637 1 chr2D.!!$F3 636
11 TraesCS6A01G138900 chr2D 353542309 353542817 508 False 375.000000 375 80.388000 1 504 1 chr2D.!!$F2 503
12 TraesCS6A01G138900 chr1D 232436362 232436995 633 False 431.000000 431 79.416000 2 637 1 chr1D.!!$F1 635
13 TraesCS6A01G138900 chr4A 724852769 724853501 732 True 299.000000 381 90.389500 2349 2793 2 chr4A.!!$R2 444

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
491 528 0.179174 CATCGGTGATGACGACGACA 60.179 55.000 0.0 0.88 42.09 4.35 F
909 977 0.248907 GCGCTACAATCAGTCGGCTA 60.249 55.000 0.0 0.00 0.00 3.93 F
1983 2439 0.249826 GTCTAGGGATGCAGAGCAGC 60.250 60.000 0.0 0.00 43.65 5.25 F
2053 2509 0.529378 CCTCCGTACAGGTTTAGCGT 59.471 55.000 0.0 0.00 41.99 5.07 F
3084 3862 0.105555 CTCCTCCAGATGGCTCCTCT 60.106 60.000 0.0 0.00 34.44 3.69 F
3699 4640 1.633432 TGCATGTTAAGCTACCTGGGT 59.367 47.619 0.0 0.00 0.00 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2526 0.179103 GCATAAGCCCGCAAAAGCAT 60.179 50.000 0.00 0.0 33.58 3.79 R
2536 3293 0.106167 ACGGCACTCCTCCAGCTATA 60.106 55.000 0.00 0.0 0.00 1.31 R
2832 3610 0.390735 AAACACACCGGCCGAGTATC 60.391 55.000 30.73 0.0 0.00 2.24 R
3699 4640 1.000955 GACTTCTTGAACAGGAGGCGA 59.999 52.381 0.00 0.0 31.02 5.54 R
3992 4933 1.006922 GAAGTGGGCTTGCAGTTGC 60.007 57.895 0.00 0.0 42.50 4.17 R
5481 6461 1.207329 ACTAGATTGCCACCTTCGTCC 59.793 52.381 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 73 3.367743 CGCCACTGCCTGCAACAT 61.368 61.111 0.00 0.00 0.00 2.71
70 87 0.386352 CACTGCCTGCAACATTGACG 60.386 55.000 0.00 0.00 0.00 4.35
73 90 1.106351 TGCCTGCAACATTGACGGTT 61.106 50.000 0.00 0.00 0.00 4.44
87 104 1.609501 CGGTTGAGGAGGAGGACCA 60.610 63.158 0.00 0.00 38.94 4.02
99 116 2.439156 GGACCACATGAGGCAGGC 60.439 66.667 9.34 0.00 0.00 4.85
125 142 2.529389 ACTCCCTCCACACCCACC 60.529 66.667 0.00 0.00 0.00 4.61
131 148 2.445085 TCCACACCCACCACGAGT 60.445 61.111 0.00 0.00 0.00 4.18
180 198 4.320456 CCTGTCAGCAGCCGGTGT 62.320 66.667 1.90 0.00 41.26 4.16
280 298 2.966732 GCCGACAGGATGGAACCCA 61.967 63.158 0.00 0.00 43.62 4.51
290 308 1.142688 ATGGAACCCAGCCTTGGTCT 61.143 55.000 0.00 0.00 43.40 3.85
301 319 1.483595 CCTTGGTCTGGCAGTCCTGA 61.484 60.000 27.00 16.53 37.90 3.86
338 357 2.046988 CGTGCATGCCTGAGGTGA 60.047 61.111 16.68 0.00 0.00 4.02
385 404 1.267806 CCATGTGAAGAGGTTGTGCAC 59.732 52.381 10.75 10.75 0.00 4.57
387 406 1.279840 GTGAAGAGGTTGTGCACGC 59.720 57.895 13.13 7.53 0.00 5.34
388 407 2.243957 TGAAGAGGTTGTGCACGCG 61.244 57.895 13.13 3.53 0.00 6.01
389 408 3.579626 GAAGAGGTTGTGCACGCGC 62.580 63.158 13.13 0.00 39.24 6.86
390 409 4.609018 AGAGGTTGTGCACGCGCT 62.609 61.111 13.13 7.07 39.64 5.92
391 410 2.709125 AAGAGGTTGTGCACGCGCTA 62.709 55.000 13.13 0.00 39.64 4.26
392 411 3.011760 GAGGTTGTGCACGCGCTAC 62.012 63.158 13.13 8.37 39.64 3.58
393 412 4.084888 GGTTGTGCACGCGCTACC 62.085 66.667 17.93 17.93 42.75 3.18
394 413 4.424430 GTTGTGCACGCGCTACCG 62.424 66.667 13.13 0.00 39.64 4.02
474 505 1.319541 CCTCCATACGTCGACCTCAT 58.680 55.000 10.58 0.00 0.00 2.90
491 528 0.179174 CATCGGTGATGACGACGACA 60.179 55.000 0.00 0.88 42.09 4.35
607 657 2.549064 TGATGTGGTGAACCTGACTG 57.451 50.000 0.37 0.00 36.82 3.51
623 673 1.598601 GACTGCCGTGGACGTTTTAAA 59.401 47.619 0.00 0.00 37.74 1.52
624 674 2.223745 ACTGCCGTGGACGTTTTAAAT 58.776 42.857 0.00 0.00 37.74 1.40
709 777 1.745232 TAGTTTGAAATGCGGCGGAT 58.255 45.000 8.49 8.49 0.00 4.18
731 799 2.201708 TTGGACGCACCGACTACCA 61.202 57.895 0.00 0.00 42.61 3.25
733 801 2.503375 GACGCACCGACTACCACG 60.503 66.667 0.00 0.00 0.00 4.94
738 806 3.741476 ACCGACTACCACGCGACC 61.741 66.667 15.93 0.00 0.00 4.79
743 811 3.179265 CTACCACGCGACCGCAAG 61.179 66.667 15.93 5.73 42.06 4.01
767 835 0.319083 TAGGCGTGTCCGTTTGTCAT 59.681 50.000 0.00 0.00 40.77 3.06
776 844 1.543802 TCCGTTTGTCATCCCAAATGC 59.456 47.619 0.00 0.00 39.11 3.56
777 845 1.404047 CCGTTTGTCATCCCAAATGCC 60.404 52.381 0.00 0.00 39.11 4.40
778 846 1.271934 CGTTTGTCATCCCAAATGCCA 59.728 47.619 0.00 0.00 36.75 4.92
779 847 2.288702 CGTTTGTCATCCCAAATGCCAA 60.289 45.455 0.00 0.00 36.75 4.52
780 848 3.737850 GTTTGTCATCCCAAATGCCAAA 58.262 40.909 0.00 0.00 36.75 3.28
781 849 4.325972 GTTTGTCATCCCAAATGCCAAAT 58.674 39.130 0.00 0.00 36.75 2.32
782 850 3.613494 TGTCATCCCAAATGCCAAATG 57.387 42.857 0.00 0.00 0.00 2.32
783 851 2.236644 TGTCATCCCAAATGCCAAATGG 59.763 45.455 0.00 0.00 38.53 3.16
797 865 2.620367 CCAAATGGGAGAAATCCGGACA 60.620 50.000 6.12 0.00 40.01 4.02
803 871 1.135774 GGAGAAATCCGGACAAAACGC 60.136 52.381 6.12 0.00 0.00 4.84
804 872 0.515564 AGAAATCCGGACAAAACGCG 59.484 50.000 6.12 3.53 0.00 6.01
805 873 1.063412 GAAATCCGGACAAAACGCGC 61.063 55.000 6.12 0.00 0.00 6.86
808 876 4.302172 CCGGACAAAACGCGCGTT 62.302 61.111 39.88 39.88 40.45 4.84
819 887 2.105328 GCGCGTTTGTTTGGGGTT 59.895 55.556 8.43 0.00 0.00 4.11
833 901 1.388837 GGGGTTGTGCGTTGGAGTTT 61.389 55.000 0.00 0.00 0.00 2.66
834 902 0.458260 GGGTTGTGCGTTGGAGTTTT 59.542 50.000 0.00 0.00 0.00 2.43
909 977 0.248907 GCGCTACAATCAGTCGGCTA 60.249 55.000 0.00 0.00 0.00 3.93
934 1002 1.150827 GGGTCGAAACGTTTTCCGAT 58.849 50.000 22.46 0.00 40.70 4.18
938 1006 2.063266 TCGAAACGTTTTCCGATCAGG 58.937 47.619 15.89 0.00 40.70 3.86
945 1013 2.287308 CGTTTTCCGATCAGGCACAAAA 60.287 45.455 0.00 0.00 40.77 2.44
982 1050 3.751049 TAGCTAGCCCCTCCCACCG 62.751 68.421 12.13 0.00 0.00 4.94
1003 1071 1.570501 TCCCTCCCTCAATCCAAATGG 59.429 52.381 0.00 0.00 0.00 3.16
1068 1145 3.786586 GAGGACGACGTCGACGCT 61.787 66.667 41.52 30.67 44.43 5.07
1070 1147 2.868787 GGACGACGTCGACGCTTC 60.869 66.667 41.52 27.40 44.43 3.86
1264 1719 3.962530 TTCGAAGCCCCCATCCCCT 62.963 63.158 0.00 0.00 0.00 4.79
1406 1861 1.743321 GAGGAGATCCCGGAGTGCAG 61.743 65.000 0.73 0.00 40.87 4.41
1889 2344 4.090588 CCGCTACCCCGCTTTCCA 62.091 66.667 0.00 0.00 0.00 3.53
1920 2376 3.711782 CCCCTTCCCCCTCCTCCT 61.712 72.222 0.00 0.00 0.00 3.69
1926 2382 1.761780 TTCCCCCTCCTCCTTCCACT 61.762 60.000 0.00 0.00 0.00 4.00
1959 2415 4.211125 TCCAGATCTGCTACAGAGTTAGG 58.789 47.826 17.76 0.00 44.08 2.69
1960 2416 3.957497 CCAGATCTGCTACAGAGTTAGGT 59.043 47.826 17.76 0.00 44.08 3.08
1961 2417 4.404073 CCAGATCTGCTACAGAGTTAGGTT 59.596 45.833 17.76 0.00 44.08 3.50
1962 2418 5.594725 CCAGATCTGCTACAGAGTTAGGTTA 59.405 44.000 17.76 0.00 44.08 2.85
1963 2419 6.266558 CCAGATCTGCTACAGAGTTAGGTTAT 59.733 42.308 17.76 0.00 44.08 1.89
1964 2420 7.144661 CAGATCTGCTACAGAGTTAGGTTATG 58.855 42.308 10.38 0.00 44.08 1.90
1965 2421 6.836527 AGATCTGCTACAGAGTTAGGTTATGT 59.163 38.462 0.00 0.00 44.08 2.29
1966 2422 6.452494 TCTGCTACAGAGTTAGGTTATGTC 57.548 41.667 0.00 0.00 35.39 3.06
1967 2423 6.188407 TCTGCTACAGAGTTAGGTTATGTCT 58.812 40.000 0.00 0.00 35.39 3.41
1968 2424 7.344134 TCTGCTACAGAGTTAGGTTATGTCTA 58.656 38.462 0.00 0.00 35.39 2.59
1969 2425 7.499563 TCTGCTACAGAGTTAGGTTATGTCTAG 59.500 40.741 0.00 0.00 35.39 2.43
1970 2426 6.546403 TGCTACAGAGTTAGGTTATGTCTAGG 59.454 42.308 0.00 0.00 0.00 3.02
1971 2427 6.016108 GCTACAGAGTTAGGTTATGTCTAGGG 60.016 46.154 0.00 0.00 0.00 3.53
1972 2428 6.088541 ACAGAGTTAGGTTATGTCTAGGGA 57.911 41.667 0.00 0.00 0.00 4.20
1973 2429 6.684538 ACAGAGTTAGGTTATGTCTAGGGAT 58.315 40.000 0.00 0.00 0.00 3.85
1974 2430 6.551601 ACAGAGTTAGGTTATGTCTAGGGATG 59.448 42.308 0.00 0.00 0.00 3.51
1975 2431 5.540719 AGAGTTAGGTTATGTCTAGGGATGC 59.459 44.000 0.00 0.00 0.00 3.91
1976 2432 5.216622 AGTTAGGTTATGTCTAGGGATGCA 58.783 41.667 0.00 0.00 0.00 3.96
1977 2433 5.305644 AGTTAGGTTATGTCTAGGGATGCAG 59.694 44.000 0.00 0.00 0.00 4.41
1978 2434 3.928754 AGGTTATGTCTAGGGATGCAGA 58.071 45.455 0.00 0.00 0.00 4.26
1979 2435 3.900601 AGGTTATGTCTAGGGATGCAGAG 59.099 47.826 0.00 0.00 0.00 3.35
1980 2436 3.556004 GGTTATGTCTAGGGATGCAGAGC 60.556 52.174 0.00 0.00 0.00 4.09
1981 2437 1.798626 ATGTCTAGGGATGCAGAGCA 58.201 50.000 0.00 0.00 44.86 4.26
1982 2438 1.117994 TGTCTAGGGATGCAGAGCAG 58.882 55.000 0.00 0.00 43.65 4.24
1983 2439 0.249826 GTCTAGGGATGCAGAGCAGC 60.250 60.000 0.00 0.00 43.65 5.25
1984 2440 1.300775 CTAGGGATGCAGAGCAGCG 60.301 63.158 0.91 0.00 46.62 5.18
2005 2461 4.256180 GATCCGCCCCGCTTCCAT 62.256 66.667 0.00 0.00 0.00 3.41
2006 2462 4.569180 ATCCGCCCCGCTTCCATG 62.569 66.667 0.00 0.00 0.00 3.66
2009 2465 4.776322 CGCCCCGCTTCCATGTCA 62.776 66.667 0.00 0.00 0.00 3.58
2010 2466 2.361104 GCCCCGCTTCCATGTCAA 60.361 61.111 0.00 0.00 0.00 3.18
2011 2467 1.976474 GCCCCGCTTCCATGTCAAA 60.976 57.895 0.00 0.00 0.00 2.69
2012 2468 1.531739 GCCCCGCTTCCATGTCAAAA 61.532 55.000 0.00 0.00 0.00 2.44
2013 2469 0.965439 CCCCGCTTCCATGTCAAAAA 59.035 50.000 0.00 0.00 0.00 1.94
2014 2470 1.067635 CCCCGCTTCCATGTCAAAAAG 60.068 52.381 0.00 0.00 0.00 2.27
2015 2471 1.885887 CCCGCTTCCATGTCAAAAAGA 59.114 47.619 0.00 0.00 0.00 2.52
2016 2472 2.493278 CCCGCTTCCATGTCAAAAAGAT 59.507 45.455 0.00 0.00 0.00 2.40
2017 2473 3.056607 CCCGCTTCCATGTCAAAAAGATT 60.057 43.478 0.00 0.00 0.00 2.40
2018 2474 4.168760 CCGCTTCCATGTCAAAAAGATTC 58.831 43.478 0.00 0.00 0.00 2.52
2019 2475 4.321156 CCGCTTCCATGTCAAAAAGATTCA 60.321 41.667 0.00 0.00 0.00 2.57
2020 2476 5.221880 CGCTTCCATGTCAAAAAGATTCAA 58.778 37.500 0.00 0.00 0.00 2.69
2021 2477 5.344128 CGCTTCCATGTCAAAAAGATTCAAG 59.656 40.000 0.00 0.00 0.00 3.02
2022 2478 6.218746 GCTTCCATGTCAAAAAGATTCAAGT 58.781 36.000 0.00 0.00 0.00 3.16
2023 2479 6.703165 GCTTCCATGTCAAAAAGATTCAAGTT 59.297 34.615 0.00 0.00 0.00 2.66
2024 2480 7.867403 GCTTCCATGTCAAAAAGATTCAAGTTA 59.133 33.333 0.00 0.00 0.00 2.24
2025 2481 9.403110 CTTCCATGTCAAAAAGATTCAAGTTAG 57.597 33.333 0.00 0.00 0.00 2.34
2026 2482 8.463930 TCCATGTCAAAAAGATTCAAGTTAGT 57.536 30.769 0.00 0.00 0.00 2.24
2027 2483 8.912988 TCCATGTCAAAAAGATTCAAGTTAGTT 58.087 29.630 0.00 0.00 0.00 2.24
2028 2484 8.971321 CCATGTCAAAAAGATTCAAGTTAGTTG 58.029 33.333 0.00 0.00 37.52 3.16
2029 2485 9.520204 CATGTCAAAAAGATTCAAGTTAGTTGT 57.480 29.630 0.00 0.00 37.43 3.32
2038 2494 8.794335 AGATTCAAGTTAGTTGTAATTCCTCC 57.206 34.615 0.00 0.00 37.43 4.30
2039 2495 7.549488 AGATTCAAGTTAGTTGTAATTCCTCCG 59.451 37.037 0.00 0.00 37.43 4.63
2040 2496 6.105397 TCAAGTTAGTTGTAATTCCTCCGT 57.895 37.500 0.00 0.00 37.43 4.69
2041 2497 7.230849 TCAAGTTAGTTGTAATTCCTCCGTA 57.769 36.000 0.00 0.00 37.43 4.02
2042 2498 7.092716 TCAAGTTAGTTGTAATTCCTCCGTAC 58.907 38.462 0.00 0.00 37.43 3.67
2043 2499 6.594788 AGTTAGTTGTAATTCCTCCGTACA 57.405 37.500 0.00 0.00 0.00 2.90
2044 2500 6.628185 AGTTAGTTGTAATTCCTCCGTACAG 58.372 40.000 0.00 0.00 0.00 2.74
2045 2501 4.467198 AGTTGTAATTCCTCCGTACAGG 57.533 45.455 0.00 0.00 42.97 4.00
2046 2502 3.836562 AGTTGTAATTCCTCCGTACAGGT 59.163 43.478 0.00 0.00 41.99 4.00
2047 2503 4.285260 AGTTGTAATTCCTCCGTACAGGTT 59.715 41.667 0.00 0.00 41.99 3.50
2048 2504 4.895668 TGTAATTCCTCCGTACAGGTTT 57.104 40.909 0.00 0.00 41.99 3.27
2049 2505 5.999205 TGTAATTCCTCCGTACAGGTTTA 57.001 39.130 0.00 0.00 41.99 2.01
2050 2506 5.969423 TGTAATTCCTCCGTACAGGTTTAG 58.031 41.667 0.00 0.00 41.99 1.85
2051 2507 3.538634 ATTCCTCCGTACAGGTTTAGC 57.461 47.619 0.00 0.00 41.99 3.09
2052 2508 0.813184 TCCTCCGTACAGGTTTAGCG 59.187 55.000 0.00 0.00 41.99 4.26
2053 2509 0.529378 CCTCCGTACAGGTTTAGCGT 59.471 55.000 0.00 0.00 41.99 5.07
2054 2510 1.745087 CCTCCGTACAGGTTTAGCGTA 59.255 52.381 0.00 0.00 41.99 4.42
2055 2511 2.223433 CCTCCGTACAGGTTTAGCGTAG 60.223 54.545 0.00 0.00 41.99 3.51
2056 2512 2.421424 CTCCGTACAGGTTTAGCGTAGT 59.579 50.000 0.00 0.00 41.99 2.73
2057 2513 2.819608 TCCGTACAGGTTTAGCGTAGTT 59.180 45.455 0.00 0.00 41.99 2.24
2058 2514 3.255642 TCCGTACAGGTTTAGCGTAGTTT 59.744 43.478 0.00 0.00 41.99 2.66
2059 2515 3.365820 CCGTACAGGTTTAGCGTAGTTTG 59.634 47.826 0.00 0.00 34.51 2.93
2060 2516 4.229096 CGTACAGGTTTAGCGTAGTTTGA 58.771 43.478 0.00 0.00 0.00 2.69
2061 2517 4.681025 CGTACAGGTTTAGCGTAGTTTGAA 59.319 41.667 0.00 0.00 0.00 2.69
2062 2518 5.387752 CGTACAGGTTTAGCGTAGTTTGAAC 60.388 44.000 0.00 0.00 0.00 3.18
2063 2519 4.700700 ACAGGTTTAGCGTAGTTTGAACT 58.299 39.130 1.60 1.60 42.91 3.01
2064 2520 5.846203 ACAGGTTTAGCGTAGTTTGAACTA 58.154 37.500 0.00 0.00 40.37 2.24
2065 2521 6.282930 ACAGGTTTAGCGTAGTTTGAACTAA 58.717 36.000 5.24 0.00 42.66 2.24
2066 2522 6.201615 ACAGGTTTAGCGTAGTTTGAACTAAC 59.798 38.462 5.24 1.76 42.66 2.34
2067 2523 5.698089 AGGTTTAGCGTAGTTTGAACTAACC 59.302 40.000 12.72 12.72 42.66 2.85
2068 2524 5.698089 GGTTTAGCGTAGTTTGAACTAACCT 59.302 40.000 13.10 10.83 42.66 3.50
2069 2525 6.128715 GGTTTAGCGTAGTTTGAACTAACCTC 60.129 42.308 13.10 0.35 42.66 3.85
2070 2526 4.595762 AGCGTAGTTTGAACTAACCTCA 57.404 40.909 5.24 0.00 42.66 3.86
2071 2527 5.148651 AGCGTAGTTTGAACTAACCTCAT 57.851 39.130 5.24 0.00 42.66 2.90
2072 2528 4.929808 AGCGTAGTTTGAACTAACCTCATG 59.070 41.667 5.24 0.00 42.66 3.07
2073 2529 4.435651 GCGTAGTTTGAACTAACCTCATGC 60.436 45.833 5.24 0.00 42.66 4.06
2074 2530 4.929808 CGTAGTTTGAACTAACCTCATGCT 59.070 41.667 5.24 0.00 42.66 3.79
2075 2531 5.408604 CGTAGTTTGAACTAACCTCATGCTT 59.591 40.000 5.24 0.00 42.66 3.91
2076 2532 6.073222 CGTAGTTTGAACTAACCTCATGCTTT 60.073 38.462 5.24 0.00 42.66 3.51
2077 2533 6.715347 AGTTTGAACTAACCTCATGCTTTT 57.285 33.333 0.00 0.00 37.52 2.27
2078 2534 6.507023 AGTTTGAACTAACCTCATGCTTTTG 58.493 36.000 0.00 0.00 37.52 2.44
2079 2535 6.956371 AGTTTGAACTAACCTCATGCTTTTGC 60.956 38.462 0.00 0.00 41.13 3.68
2080 2536 9.998766 AGTTTGAACTAACCTCATGCTTTTGCG 62.999 40.741 0.00 0.00 42.71 4.85
2089 2545 4.093115 GCTTTTGCGGGCTTATGC 57.907 55.556 0.00 0.00 35.22 3.14
2101 2557 2.770699 GCTTATGCCAGACTTGCATC 57.229 50.000 16.70 0.60 46.04 3.91
2102 2558 1.336125 GCTTATGCCAGACTTGCATCC 59.664 52.381 16.70 4.54 46.04 3.51
2103 2559 1.952296 CTTATGCCAGACTTGCATCCC 59.048 52.381 16.70 0.00 46.04 3.85
2104 2560 1.216064 TATGCCAGACTTGCATCCCT 58.784 50.000 16.70 0.00 46.04 4.20
2105 2561 1.216064 ATGCCAGACTTGCATCCCTA 58.784 50.000 8.17 0.00 46.04 3.53
2167 2623 9.787435 AAATACAAAGTTAGGTTGTGTCTATGA 57.213 29.630 0.18 0.00 39.50 2.15
2171 2627 7.719633 ACAAAGTTAGGTTGTGTCTATGATGTT 59.280 33.333 0.00 0.00 37.80 2.71
2173 2629 6.769512 AGTTAGGTTGTGTCTATGATGTTGT 58.230 36.000 0.00 0.00 0.00 3.32
2219 2677 1.364269 TGTTATGAAGGGGGTCGGTT 58.636 50.000 0.00 0.00 0.00 4.44
2229 2687 1.480789 GGGGTCGGTTGCCATAAAAT 58.519 50.000 0.00 0.00 0.00 1.82
2232 2690 1.203523 GGTCGGTTGCCATAAAATGCA 59.796 47.619 0.00 0.00 35.27 3.96
2273 2732 5.105957 TGGTGTTTATGTATTTGCAGCGAAT 60.106 36.000 12.73 12.73 0.00 3.34
2370 2829 2.230660 AGGAGCTAGTTTGGTTTGTGC 58.769 47.619 0.00 0.00 0.00 4.57
2389 2848 0.540365 CCCACAAGTTGATGCCTGGT 60.540 55.000 10.54 0.00 0.00 4.00
2493 2957 1.211949 GCCTGGCCTGGTGAATAGTTA 59.788 52.381 27.68 0.00 0.00 2.24
2499 2963 4.017958 TGGCCTGGTGAATAGTTAAATGGA 60.018 41.667 3.32 0.00 0.00 3.41
2503 2967 6.980397 GCCTGGTGAATAGTTAAATGGATTTG 59.020 38.462 0.00 0.00 0.00 2.32
2526 2990 5.997746 TGAAAAGGAATCTTGGACTGTACTG 59.002 40.000 0.00 0.00 32.75 2.74
2531 2995 3.601443 ATCTTGGACTGTACTGCTGAC 57.399 47.619 0.00 0.00 0.00 3.51
2532 2996 1.618837 TCTTGGACTGTACTGCTGACC 59.381 52.381 0.00 0.27 0.00 4.02
2536 3293 2.225041 TGGACTGTACTGCTGACCTACT 60.225 50.000 0.00 0.00 33.52 2.57
2544 3301 3.226777 ACTGCTGACCTACTATAGCTGG 58.773 50.000 0.00 4.90 38.79 4.85
2553 3310 1.710816 ACTATAGCTGGAGGAGTGCC 58.289 55.000 0.00 0.00 0.00 5.01
2747 3525 1.988107 TCTCTGAAAATCCTGGCAGGT 59.012 47.619 31.60 17.12 36.53 4.00
2761 3539 2.943265 AGGTTCCAGGCCAGGCAT 60.943 61.111 15.19 1.92 0.00 4.40
2776 3554 2.261361 CATGGCACGACGAGGACA 59.739 61.111 0.00 1.39 0.00 4.02
2793 3571 3.397955 AGGACATGAACCAAACTAACCCT 59.602 43.478 0.00 0.00 0.00 4.34
2794 3572 4.600111 AGGACATGAACCAAACTAACCCTA 59.400 41.667 0.00 0.00 0.00 3.53
2795 3573 4.941873 GGACATGAACCAAACTAACCCTAG 59.058 45.833 0.00 0.00 0.00 3.02
2813 3591 7.961326 ACCCTAGATGATTTAAAACAATGCT 57.039 32.000 2.00 3.80 0.00 3.79
2829 3607 7.502120 AACAATGCTGATACTTCATGGATAC 57.498 36.000 0.00 0.00 0.00 2.24
2830 3608 6.835174 ACAATGCTGATACTTCATGGATACT 58.165 36.000 0.00 0.00 37.61 2.12
2831 3609 6.709397 ACAATGCTGATACTTCATGGATACTG 59.291 38.462 0.00 0.00 37.61 2.74
2832 3610 5.219343 TGCTGATACTTCATGGATACTGG 57.781 43.478 0.00 0.00 37.61 4.00
2833 3611 4.901250 TGCTGATACTTCATGGATACTGGA 59.099 41.667 0.00 0.00 37.61 3.86
2834 3612 5.545335 TGCTGATACTTCATGGATACTGGAT 59.455 40.000 0.00 0.00 37.61 3.41
2835 3613 6.725834 TGCTGATACTTCATGGATACTGGATA 59.274 38.462 0.00 0.00 37.61 2.59
2843 3621 0.526662 GGATACTGGATACTCGGCCG 59.473 60.000 22.12 22.12 37.61 6.13
2847 3625 2.363276 TGGATACTCGGCCGGTGT 60.363 61.111 27.83 25.20 37.61 4.16
2876 3654 0.625849 ATGGTCCAGCCCAGTTAAGG 59.374 55.000 0.00 0.00 38.07 2.69
2905 3683 1.046204 CGATACAACCCTAGTCCCCC 58.954 60.000 0.00 0.00 0.00 5.40
2923 3701 0.859232 CCGACGCCTCATATTTTCCG 59.141 55.000 0.00 0.00 0.00 4.30
2927 3705 1.226746 CGCCTCATATTTTCCGTCCC 58.773 55.000 0.00 0.00 0.00 4.46
3028 3806 2.418609 GCTGCTCCTCTTCTCCTTTCTC 60.419 54.545 0.00 0.00 0.00 2.87
3029 3807 3.099141 CTGCTCCTCTTCTCCTTTCTCT 58.901 50.000 0.00 0.00 0.00 3.10
3030 3808 3.515104 CTGCTCCTCTTCTCCTTTCTCTT 59.485 47.826 0.00 0.00 0.00 2.85
3031 3809 3.513515 TGCTCCTCTTCTCCTTTCTCTTC 59.486 47.826 0.00 0.00 0.00 2.87
3032 3810 3.769300 GCTCCTCTTCTCCTTTCTCTTCT 59.231 47.826 0.00 0.00 0.00 2.85
3033 3811 4.953579 GCTCCTCTTCTCCTTTCTCTTCTA 59.046 45.833 0.00 0.00 0.00 2.10
3034 3812 5.067805 GCTCCTCTTCTCCTTTCTCTTCTAG 59.932 48.000 0.00 0.00 0.00 2.43
3035 3813 6.147437 TCCTCTTCTCCTTTCTCTTCTAGT 57.853 41.667 0.00 0.00 0.00 2.57
3084 3862 0.105555 CTCCTCCAGATGGCTCCTCT 60.106 60.000 0.00 0.00 34.44 3.69
3140 3918 4.868734 GGAGCCATGTTACAGTGTTAGTAC 59.131 45.833 0.00 0.00 0.00 2.73
3142 3920 5.721232 AGCCATGTTACAGTGTTAGTACTC 58.279 41.667 0.00 0.00 0.00 2.59
3269 4047 2.882137 TCCGATGCTGATACACGTATCA 59.118 45.455 16.83 16.83 46.81 2.15
3523 4464 5.952347 CCTGTGCTACCCACTAGATCATATA 59.048 44.000 0.00 0.00 44.92 0.86
3524 4465 6.437477 CCTGTGCTACCCACTAGATCATATAA 59.563 42.308 0.00 0.00 44.92 0.98
3525 4466 7.124901 CCTGTGCTACCCACTAGATCATATAAT 59.875 40.741 0.00 0.00 44.92 1.28
3526 4467 8.067751 TGTGCTACCCACTAGATCATATAATC 57.932 38.462 0.00 0.00 44.92 1.75
3527 4468 7.895962 TGTGCTACCCACTAGATCATATAATCT 59.104 37.037 0.00 0.00 44.92 2.40
3592 4533 2.872245 GCTGTTGTAAAGAGTGCTGTCA 59.128 45.455 0.00 0.00 39.80 3.58
3699 4640 1.633432 TGCATGTTAAGCTACCTGGGT 59.367 47.619 0.00 0.00 0.00 4.51
3833 4774 1.638133 CTCAAGTCCAGCATGAGTCG 58.362 55.000 0.00 0.00 39.69 4.18
3845 4786 1.728971 CATGAGTCGGTGCTGAAGAAC 59.271 52.381 0.00 0.00 0.00 3.01
3971 4912 3.023832 GGTTCAAGGTGTCCATAATGGG 58.976 50.000 0.00 0.00 38.32 4.00
3992 4933 4.058817 GGTCATCTATCCAAAAGCTACCG 58.941 47.826 0.00 0.00 0.00 4.02
4042 4983 2.902608 TCAAGGTGGGAGCTTCTAGAA 58.097 47.619 4.81 4.81 32.99 2.10
4064 5005 6.710692 AAAGTTTTGTGAAGCTTTCAACAG 57.289 33.333 14.56 0.00 40.80 3.16
4107 5048 7.433537 AAACATAGCTGTATTACCTGTACCT 57.566 36.000 0.00 0.00 33.36 3.08
4189 5133 7.833682 TGATAGAATGATGGGCTTACTTTTCAA 59.166 33.333 0.00 0.00 0.00 2.69
4232 5176 3.305398 ACTGTCCTTTAGCAAGAGTCG 57.695 47.619 0.00 0.00 30.57 4.18
4325 5269 7.176340 GGCTAAGCAATCAAGATGATTCCTATT 59.824 37.037 2.70 0.16 43.03 1.73
4326 5270 9.224267 GCTAAGCAATCAAGATGATTCCTATTA 57.776 33.333 2.70 1.12 43.03 0.98
4358 5302 9.042008 ACATTATTGATTAGATGTACGTGTTCC 57.958 33.333 0.00 0.00 31.41 3.62
4359 5303 9.261180 CATTATTGATTAGATGTACGTGTTCCT 57.739 33.333 0.00 0.00 0.00 3.36
4360 5304 9.832445 ATTATTGATTAGATGTACGTGTTCCTT 57.168 29.630 0.00 0.00 0.00 3.36
4361 5305 6.961359 TTGATTAGATGTACGTGTTCCTTG 57.039 37.500 0.00 0.00 0.00 3.61
4362 5306 4.868171 TGATTAGATGTACGTGTTCCTTGC 59.132 41.667 0.00 0.00 0.00 4.01
4363 5307 2.831685 AGATGTACGTGTTCCTTGCA 57.168 45.000 0.00 0.00 0.00 4.08
4364 5308 3.334583 AGATGTACGTGTTCCTTGCAT 57.665 42.857 0.00 0.00 0.00 3.96
4365 5309 4.465632 AGATGTACGTGTTCCTTGCATA 57.534 40.909 0.00 0.00 0.00 3.14
4366 5310 5.023533 AGATGTACGTGTTCCTTGCATAT 57.976 39.130 0.00 0.00 0.00 1.78
4367 5311 5.428253 AGATGTACGTGTTCCTTGCATATT 58.572 37.500 0.00 0.00 0.00 1.28
4368 5312 4.937696 TGTACGTGTTCCTTGCATATTG 57.062 40.909 0.00 0.00 0.00 1.90
4409 5353 2.094286 TGCATAAAATGGTTTGGCGAGG 60.094 45.455 0.00 0.00 33.47 4.63
4436 5380 4.022589 ACATGAAATTGAGTCACTTGGCTG 60.023 41.667 0.00 0.00 0.00 4.85
4698 5642 0.636101 AGAGGACAGAGGGCTGAGAT 59.364 55.000 0.00 0.00 45.17 2.75
4703 5647 2.318908 GACAGAGGGCTGAGATGATCT 58.681 52.381 0.00 0.00 45.17 2.75
4769 5713 9.504708 TGCATTCCAAAATTTCATTATTTCTGT 57.495 25.926 0.00 0.00 0.00 3.41
4794 5738 3.921119 TGCACATGCTTCCTTTTACAG 57.079 42.857 5.31 0.00 42.66 2.74
4797 5741 4.523943 TGCACATGCTTCCTTTTACAGAAT 59.476 37.500 5.31 0.00 42.66 2.40
4801 5746 7.598493 GCACATGCTTCCTTTTACAGAATAAAA 59.402 33.333 0.00 0.00 38.21 1.52
4996 5942 7.255381 CCATGGAGAGTGTCATTTCAATATTCC 60.255 40.741 5.56 0.00 0.00 3.01
5262 6208 4.164221 AGGTGGATCGGTAATCATGAGTTT 59.836 41.667 0.00 0.00 35.96 2.66
5343 6300 0.790814 GCTCTAAGCACACGGAACAC 59.209 55.000 0.00 0.00 41.89 3.32
5440 6414 5.221244 GCCTCCAAAACAAGTGACAAGTATT 60.221 40.000 0.00 0.00 0.00 1.89
5474 6454 7.657761 AGACAAGACAAACTTCTAACCTACATG 59.342 37.037 0.00 0.00 36.61 3.21
5620 6601 6.479001 GTGTCTGTGCAAAACTTCTAGAACTA 59.521 38.462 0.00 0.00 0.00 2.24
5625 6606 4.755123 TGCAAAACTTCTAGAACTAGTGGC 59.245 41.667 0.00 4.72 34.84 5.01
5758 6765 6.575244 TCCACATTATATCTTTCCAGTGGT 57.425 37.500 9.54 0.00 44.18 4.16
5888 6895 8.506168 TTGATTCTGTTAACTGTGAAAGAACT 57.494 30.769 7.22 0.00 0.00 3.01
5889 6896 9.607988 TTGATTCTGTTAACTGTGAAAGAACTA 57.392 29.630 7.22 0.00 0.00 2.24
5905 6912 3.506844 AGAACTACACCGAGTTTCTCCTC 59.493 47.826 0.00 0.00 39.79 3.71
5916 6923 5.282510 CGAGTTTCTCCTCGCATAATACTT 58.717 41.667 0.00 0.00 46.64 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.625099 GGCGTAGGAGTAAGGCCA 58.375 61.111 5.01 0.00 45.18 5.36
50 57 0.038892 GTCAATGTTGCAGGCAGTGG 60.039 55.000 16.71 3.68 33.40 4.00
58 65 0.950836 CCTCAACCGTCAATGTTGCA 59.049 50.000 0.00 0.00 42.17 4.08
62 69 1.276421 CTCCTCCTCAACCGTCAATGT 59.724 52.381 0.00 0.00 0.00 2.71
64 72 0.905357 CCTCCTCCTCAACCGTCAAT 59.095 55.000 0.00 0.00 0.00 2.57
65 73 0.178944 TCCTCCTCCTCAACCGTCAA 60.179 55.000 0.00 0.00 0.00 3.18
70 87 0.836400 TGTGGTCCTCCTCCTCAACC 60.836 60.000 0.00 0.00 34.23 3.77
73 90 0.413434 TCATGTGGTCCTCCTCCTCA 59.587 55.000 0.00 0.00 33.88 3.86
87 104 2.191375 CCATCGCCTGCCTCATGT 59.809 61.111 0.00 0.00 0.00 3.21
178 196 3.589654 CTCTGGGAAAGCGGCGACA 62.590 63.158 12.98 0.00 0.00 4.35
180 198 4.760047 GCTCTGGGAAAGCGGCGA 62.760 66.667 12.98 0.00 0.00 5.54
183 201 2.510238 CGAGCTCTGGGAAAGCGG 60.510 66.667 12.85 0.00 44.59 5.52
187 205 2.261671 GCGTCGAGCTCTGGGAAA 59.738 61.111 12.85 0.00 44.04 3.13
222 240 2.758327 CCCGGACGTCCTCCATGA 60.758 66.667 30.92 0.00 39.39 3.07
290 308 2.462301 TCCATGTTCAGGACTGCCA 58.538 52.632 0.00 0.00 36.29 4.92
388 407 4.830765 TGTGGCGGATGCGGTAGC 62.831 66.667 9.20 0.00 44.10 3.58
389 408 2.125310 TTGTGGCGGATGCGGTAG 60.125 61.111 9.20 0.00 44.10 3.18
390 409 2.435234 GTTGTGGCGGATGCGGTA 60.435 61.111 9.20 0.00 44.10 4.02
391 410 4.634703 TGTTGTGGCGGATGCGGT 62.635 61.111 9.20 0.00 44.10 5.68
392 411 3.803082 CTGTTGTGGCGGATGCGG 61.803 66.667 9.20 0.00 44.10 5.69
393 412 2.741985 TCTGTTGTGGCGGATGCG 60.742 61.111 0.65 0.65 44.10 4.73
394 413 2.870372 GTCTGTTGTGGCGGATGC 59.130 61.111 0.00 0.00 41.71 3.91
395 414 3.027170 GCGTCTGTTGTGGCGGATG 62.027 63.158 0.00 0.00 34.70 3.51
396 415 2.742372 GCGTCTGTTGTGGCGGAT 60.742 61.111 0.00 0.00 0.00 4.18
397 416 4.980805 GGCGTCTGTTGTGGCGGA 62.981 66.667 0.00 0.00 0.00 5.54
398 417 4.988598 AGGCGTCTGTTGTGGCGG 62.989 66.667 0.00 0.00 0.00 6.13
474 505 0.386352 GTTGTCGTCGTCATCACCGA 60.386 55.000 0.00 0.00 0.00 4.69
478 509 0.589708 ACTCGTTGTCGTCGTCATCA 59.410 50.000 0.00 0.00 38.33 3.07
479 510 2.429061 CTACTCGTTGTCGTCGTCATC 58.571 52.381 0.00 0.00 38.33 2.92
480 511 1.129998 CCTACTCGTTGTCGTCGTCAT 59.870 52.381 0.00 0.00 38.33 3.06
481 512 0.514255 CCTACTCGTTGTCGTCGTCA 59.486 55.000 0.00 0.00 38.33 4.35
491 528 0.391661 TAGCCGTCGTCCTACTCGTT 60.392 55.000 0.00 0.00 0.00 3.85
526 563 2.431942 GGTCGTCGTCGCCAATGT 60.432 61.111 9.68 0.00 36.96 2.71
535 572 5.397142 AAAAACTAGATAAGGGTCGTCGT 57.603 39.130 0.00 0.00 0.00 4.34
607 657 7.974243 ATATAAAATTTAAAACGTCCACGGC 57.026 32.000 3.81 0.00 44.95 5.68
690 758 1.668751 GATCCGCCGCATTTCAAACTA 59.331 47.619 0.00 0.00 0.00 2.24
697 765 2.437716 AACCGATCCGCCGCATTT 60.438 55.556 0.00 0.00 0.00 2.32
698 766 3.202001 CAACCGATCCGCCGCATT 61.202 61.111 0.00 0.00 0.00 3.56
717 785 4.712425 GCGTGGTAGTCGGTGCGT 62.712 66.667 0.00 0.00 0.00 5.24
733 801 3.330853 CTATCCGCTTGCGGTCGC 61.331 66.667 29.41 8.54 42.35 5.19
740 808 1.883084 GGACACGCCTATCCGCTTG 60.883 63.158 0.00 0.00 34.38 4.01
748 816 0.319083 ATGACAAACGGACACGCCTA 59.681 50.000 0.00 0.00 46.04 3.93
751 819 1.495951 GGATGACAAACGGACACGC 59.504 57.895 0.00 0.00 46.04 5.34
776 844 2.024414 GTCCGGATTTCTCCCATTTGG 58.976 52.381 7.81 0.00 38.45 3.28
777 845 2.722094 TGTCCGGATTTCTCCCATTTG 58.278 47.619 7.81 0.00 38.45 2.32
778 846 3.449746 TTGTCCGGATTTCTCCCATTT 57.550 42.857 7.81 0.00 38.45 2.32
779 847 3.449746 TTTGTCCGGATTTCTCCCATT 57.550 42.857 7.81 0.00 38.45 3.16
780 848 3.089284 GTTTTGTCCGGATTTCTCCCAT 58.911 45.455 7.81 0.00 38.45 4.00
781 849 2.510613 GTTTTGTCCGGATTTCTCCCA 58.489 47.619 7.81 0.00 38.45 4.37
782 850 1.467342 CGTTTTGTCCGGATTTCTCCC 59.533 52.381 7.81 0.00 38.45 4.30
783 851 1.135774 GCGTTTTGTCCGGATTTCTCC 60.136 52.381 7.81 0.00 38.29 3.71
784 852 1.463528 CGCGTTTTGTCCGGATTTCTC 60.464 52.381 7.81 0.00 0.00 2.87
785 853 0.515564 CGCGTTTTGTCCGGATTTCT 59.484 50.000 7.81 0.00 0.00 2.52
797 865 1.414527 CCCAAACAAACGCGCGTTTT 61.415 50.000 46.95 35.47 44.84 2.43
803 871 1.139947 ACAACCCCAAACAAACGCG 59.860 52.632 3.53 3.53 0.00 6.01
804 872 1.425267 GCACAACCCCAAACAAACGC 61.425 55.000 0.00 0.00 0.00 4.84
805 873 1.142778 CGCACAACCCCAAACAAACG 61.143 55.000 0.00 0.00 0.00 3.60
808 876 0.108615 CAACGCACAACCCCAAACAA 60.109 50.000 0.00 0.00 0.00 2.83
810 878 1.227118 CCAACGCACAACCCCAAAC 60.227 57.895 0.00 0.00 0.00 2.93
819 887 2.614983 GTTAGGAAAACTCCAACGCACA 59.385 45.455 0.00 0.00 0.00 4.57
833 901 1.542472 TCACTGATCGTGCGTTAGGAA 59.458 47.619 11.34 0.00 43.46 3.36
834 902 1.132453 CTCACTGATCGTGCGTTAGGA 59.868 52.381 11.34 0.00 43.46 2.94
887 955 1.516386 CGACTGATTGTAGCGCCGT 60.516 57.895 2.29 0.00 0.00 5.68
889 957 2.526120 GCCGACTGATTGTAGCGCC 61.526 63.158 2.29 0.00 0.00 6.53
895 963 2.363680 CCAGATCTAGCCGACTGATTGT 59.636 50.000 0.00 0.00 32.90 2.71
909 977 2.833631 AAACGTTTCGACCCAGATCT 57.166 45.000 7.96 0.00 0.00 2.75
934 1002 1.536766 CGCTGAGATTTTTGTGCCTGA 59.463 47.619 0.00 0.00 0.00 3.86
938 1006 0.733909 GGGCGCTGAGATTTTTGTGC 60.734 55.000 7.64 0.00 35.48 4.57
945 1013 1.678970 GGGTTTGGGCGCTGAGATT 60.679 57.895 7.64 0.00 0.00 2.40
982 1050 2.659428 CATTTGGATTGAGGGAGGGAC 58.341 52.381 0.00 0.00 0.00 4.46
983 1051 1.570501 CCATTTGGATTGAGGGAGGGA 59.429 52.381 0.00 0.00 37.39 4.20
1068 1145 4.207281 CCGGATCCAGCGCTCGAA 62.207 66.667 7.13 0.00 0.00 3.71
1071 1148 4.959596 GAGCCGGATCCAGCGCTC 62.960 72.222 22.68 22.68 40.82 5.03
1098 1175 4.570874 GCGAGGATGGGGGCTTCC 62.571 72.222 0.00 0.00 0.00 3.46
1873 2328 2.818274 GTGGAAAGCGGGGTAGCG 60.818 66.667 0.00 0.00 43.00 4.26
1876 2331 1.229400 AGGAGTGGAAAGCGGGGTA 60.229 57.895 0.00 0.00 0.00 3.69
1909 2364 1.690985 GAGTGGAAGGAGGAGGGGG 60.691 68.421 0.00 0.00 0.00 5.40
1913 2369 1.557371 GAAAGGGAGTGGAAGGAGGAG 59.443 57.143 0.00 0.00 0.00 3.69
1914 2370 1.657804 GAAAGGGAGTGGAAGGAGGA 58.342 55.000 0.00 0.00 0.00 3.71
1916 2372 0.621082 GGGAAAGGGAGTGGAAGGAG 59.379 60.000 0.00 0.00 0.00 3.69
1920 2376 0.845102 GGAGGGGAAAGGGAGTGGAA 60.845 60.000 0.00 0.00 0.00 3.53
1926 2382 0.725133 AGATCTGGAGGGGAAAGGGA 59.275 55.000 0.00 0.00 0.00 4.20
1959 2415 3.070159 TGCTCTGCATCCCTAGACATAAC 59.930 47.826 0.00 0.00 31.71 1.89
1960 2416 3.308401 TGCTCTGCATCCCTAGACATAA 58.692 45.455 0.00 0.00 31.71 1.90
1961 2417 2.896044 CTGCTCTGCATCCCTAGACATA 59.104 50.000 0.00 0.00 38.13 2.29
1962 2418 1.693062 CTGCTCTGCATCCCTAGACAT 59.307 52.381 0.00 0.00 38.13 3.06
1963 2419 1.117994 CTGCTCTGCATCCCTAGACA 58.882 55.000 0.00 0.00 38.13 3.41
1964 2420 0.249826 GCTGCTCTGCATCCCTAGAC 60.250 60.000 0.00 0.00 38.13 2.59
1965 2421 1.742324 CGCTGCTCTGCATCCCTAGA 61.742 60.000 0.00 0.00 38.13 2.43
1966 2422 1.300775 CGCTGCTCTGCATCCCTAG 60.301 63.158 0.00 0.00 38.13 3.02
1967 2423 2.817424 CGCTGCTCTGCATCCCTA 59.183 61.111 0.00 0.00 38.13 3.53
1968 2424 4.853050 GCGCTGCTCTGCATCCCT 62.853 66.667 0.00 0.00 38.13 4.20
1988 2444 4.256180 ATGGAAGCGGGGCGGATC 62.256 66.667 0.00 0.00 0.00 3.36
1989 2445 4.569180 CATGGAAGCGGGGCGGAT 62.569 66.667 0.00 0.00 0.00 4.18
1992 2448 4.776322 TGACATGGAAGCGGGGCG 62.776 66.667 0.00 0.00 0.00 6.13
1993 2449 1.531739 TTTTGACATGGAAGCGGGGC 61.532 55.000 0.00 0.00 0.00 5.80
1994 2450 0.965439 TTTTTGACATGGAAGCGGGG 59.035 50.000 0.00 0.00 0.00 5.73
1995 2451 1.885887 TCTTTTTGACATGGAAGCGGG 59.114 47.619 0.00 0.00 0.00 6.13
1996 2452 3.855689 ATCTTTTTGACATGGAAGCGG 57.144 42.857 0.00 0.00 0.00 5.52
1997 2453 4.797471 TGAATCTTTTTGACATGGAAGCG 58.203 39.130 0.00 0.00 0.00 4.68
1998 2454 6.218746 ACTTGAATCTTTTTGACATGGAAGC 58.781 36.000 0.00 0.00 0.00 3.86
1999 2455 9.403110 CTAACTTGAATCTTTTTGACATGGAAG 57.597 33.333 0.00 0.00 0.00 3.46
2000 2456 8.912988 ACTAACTTGAATCTTTTTGACATGGAA 58.087 29.630 0.00 0.00 0.00 3.53
2001 2457 8.463930 ACTAACTTGAATCTTTTTGACATGGA 57.536 30.769 0.00 0.00 0.00 3.41
2002 2458 8.971321 CAACTAACTTGAATCTTTTTGACATGG 58.029 33.333 0.00 0.00 30.42 3.66
2003 2459 9.520204 ACAACTAACTTGAATCTTTTTGACATG 57.480 29.630 0.00 0.00 33.59 3.21
2012 2468 9.232473 GGAGGAATTACAACTAACTTGAATCTT 57.768 33.333 0.00 0.00 33.59 2.40
2013 2469 7.549488 CGGAGGAATTACAACTAACTTGAATCT 59.451 37.037 0.00 0.00 33.59 2.40
2014 2470 7.333672 ACGGAGGAATTACAACTAACTTGAATC 59.666 37.037 0.00 0.00 33.59 2.52
2015 2471 7.166167 ACGGAGGAATTACAACTAACTTGAAT 58.834 34.615 0.00 0.00 33.59 2.57
2016 2472 6.527423 ACGGAGGAATTACAACTAACTTGAA 58.473 36.000 0.00 0.00 33.59 2.69
2017 2473 6.105397 ACGGAGGAATTACAACTAACTTGA 57.895 37.500 0.00 0.00 33.59 3.02
2018 2474 6.869913 TGTACGGAGGAATTACAACTAACTTG 59.130 38.462 0.00 0.00 35.77 3.16
2019 2475 6.996509 TGTACGGAGGAATTACAACTAACTT 58.003 36.000 0.00 0.00 0.00 2.66
2020 2476 6.350780 CCTGTACGGAGGAATTACAACTAACT 60.351 42.308 2.31 0.00 34.69 2.24
2021 2477 5.809051 CCTGTACGGAGGAATTACAACTAAC 59.191 44.000 2.31 0.00 34.69 2.34
2022 2478 5.481473 ACCTGTACGGAGGAATTACAACTAA 59.519 40.000 2.31 0.00 36.51 2.24
2023 2479 5.018809 ACCTGTACGGAGGAATTACAACTA 58.981 41.667 2.31 0.00 36.51 2.24
2024 2480 3.836562 ACCTGTACGGAGGAATTACAACT 59.163 43.478 2.31 0.00 36.51 3.16
2025 2481 4.198028 ACCTGTACGGAGGAATTACAAC 57.802 45.455 2.31 0.00 36.51 3.32
2026 2482 4.895668 AACCTGTACGGAGGAATTACAA 57.104 40.909 2.31 0.00 36.51 2.41
2027 2483 4.895668 AAACCTGTACGGAGGAATTACA 57.104 40.909 2.31 0.00 36.51 2.41
2028 2484 4.807834 GCTAAACCTGTACGGAGGAATTAC 59.192 45.833 2.31 0.00 36.51 1.89
2029 2485 4.440525 CGCTAAACCTGTACGGAGGAATTA 60.441 45.833 2.31 3.36 36.51 1.40
2030 2486 3.677976 CGCTAAACCTGTACGGAGGAATT 60.678 47.826 2.31 2.39 36.51 2.17
2031 2487 2.159142 CGCTAAACCTGTACGGAGGAAT 60.159 50.000 2.31 0.00 36.51 3.01
2032 2488 1.203052 CGCTAAACCTGTACGGAGGAA 59.797 52.381 2.31 0.00 36.51 3.36
2033 2489 0.813184 CGCTAAACCTGTACGGAGGA 59.187 55.000 2.31 0.00 36.51 3.71
2034 2490 0.529378 ACGCTAAACCTGTACGGAGG 59.471 55.000 2.31 0.00 39.28 4.30
2035 2491 2.421424 ACTACGCTAAACCTGTACGGAG 59.579 50.000 2.31 0.00 40.52 4.63
2036 2492 2.436417 ACTACGCTAAACCTGTACGGA 58.564 47.619 2.31 0.00 36.31 4.69
2037 2493 2.927553 ACTACGCTAAACCTGTACGG 57.072 50.000 0.00 0.00 39.35 4.02
2038 2494 4.229096 TCAAACTACGCTAAACCTGTACG 58.771 43.478 0.00 0.00 0.00 3.67
2039 2495 5.693555 AGTTCAAACTACGCTAAACCTGTAC 59.306 40.000 0.00 0.00 37.52 2.90
2040 2496 5.846203 AGTTCAAACTACGCTAAACCTGTA 58.154 37.500 0.00 0.00 37.52 2.74
2041 2497 4.700700 AGTTCAAACTACGCTAAACCTGT 58.299 39.130 0.00 0.00 37.52 4.00
2042 2498 6.347160 GGTTAGTTCAAACTACGCTAAACCTG 60.347 42.308 12.56 0.00 40.95 4.00
2043 2499 5.698089 GGTTAGTTCAAACTACGCTAAACCT 59.302 40.000 12.56 0.00 40.95 3.50
2044 2500 5.698089 AGGTTAGTTCAAACTACGCTAAACC 59.302 40.000 12.15 12.15 40.95 3.27
2045 2501 6.421801 TGAGGTTAGTTCAAACTACGCTAAAC 59.578 38.462 2.13 0.00 40.95 2.01
2046 2502 6.514947 TGAGGTTAGTTCAAACTACGCTAAA 58.485 36.000 2.13 0.00 40.95 1.85
2047 2503 6.088016 TGAGGTTAGTTCAAACTACGCTAA 57.912 37.500 2.13 0.00 40.95 3.09
2048 2504 5.710513 TGAGGTTAGTTCAAACTACGCTA 57.289 39.130 2.13 0.00 40.95 4.26
2049 2505 4.595762 TGAGGTTAGTTCAAACTACGCT 57.404 40.909 2.13 0.16 40.95 5.07
2050 2506 4.435651 GCATGAGGTTAGTTCAAACTACGC 60.436 45.833 0.00 0.00 40.95 4.42
2051 2507 4.929808 AGCATGAGGTTAGTTCAAACTACG 59.070 41.667 0.00 0.00 40.95 3.51
2052 2508 6.803154 AAGCATGAGGTTAGTTCAAACTAC 57.197 37.500 0.00 0.00 40.95 2.73
2053 2509 7.648142 CAAAAGCATGAGGTTAGTTCAAACTA 58.352 34.615 0.00 0.00 40.37 2.24
2054 2510 6.507023 CAAAAGCATGAGGTTAGTTCAAACT 58.493 36.000 0.00 0.46 42.91 2.66
2055 2511 5.175673 GCAAAAGCATGAGGTTAGTTCAAAC 59.824 40.000 0.00 0.00 34.49 2.93
2056 2512 5.288804 GCAAAAGCATGAGGTTAGTTCAAA 58.711 37.500 0.00 0.00 34.49 2.69
2057 2513 4.556501 CGCAAAAGCATGAGGTTAGTTCAA 60.557 41.667 0.00 0.00 34.49 2.69
2058 2514 3.058293 CGCAAAAGCATGAGGTTAGTTCA 60.058 43.478 0.00 0.00 34.49 3.18
2059 2515 3.492313 CGCAAAAGCATGAGGTTAGTTC 58.508 45.455 0.00 0.00 34.49 3.01
2060 2516 2.228822 CCGCAAAAGCATGAGGTTAGTT 59.771 45.455 0.00 0.00 35.75 2.24
2061 2517 1.812571 CCGCAAAAGCATGAGGTTAGT 59.187 47.619 0.00 0.00 35.75 2.24
2062 2518 1.133025 CCCGCAAAAGCATGAGGTTAG 59.867 52.381 0.00 0.00 38.47 2.34
2063 2519 1.173043 CCCGCAAAAGCATGAGGTTA 58.827 50.000 0.00 0.00 38.47 2.85
2064 2520 1.966762 CCCGCAAAAGCATGAGGTT 59.033 52.632 0.00 0.00 38.47 3.50
2065 2521 2.639327 GCCCGCAAAAGCATGAGGT 61.639 57.895 0.00 0.00 38.47 3.85
2066 2522 1.880819 AAGCCCGCAAAAGCATGAGG 61.881 55.000 0.00 0.91 39.69 3.86
2067 2523 0.810648 TAAGCCCGCAAAAGCATGAG 59.189 50.000 0.00 0.00 0.00 2.90
2068 2524 1.134753 CATAAGCCCGCAAAAGCATGA 59.865 47.619 0.00 0.00 0.00 3.07
2069 2525 1.563111 CATAAGCCCGCAAAAGCATG 58.437 50.000 0.00 0.00 0.00 4.06
2070 2526 0.179103 GCATAAGCCCGCAAAAGCAT 60.179 50.000 0.00 0.00 33.58 3.79
2071 2527 1.215117 GCATAAGCCCGCAAAAGCA 59.785 52.632 0.00 0.00 33.58 3.91
2072 2528 4.093115 GCATAAGCCCGCAAAAGC 57.907 55.556 0.00 0.00 33.58 3.51
2087 2543 0.543277 CTAGGGATGCAAGTCTGGCA 59.457 55.000 3.86 3.86 46.66 4.92
2088 2544 0.543749 ACTAGGGATGCAAGTCTGGC 59.456 55.000 0.00 0.00 0.00 4.85
2089 2545 4.141620 ACATAACTAGGGATGCAAGTCTGG 60.142 45.833 0.00 0.00 0.00 3.86
2090 2546 5.028549 ACATAACTAGGGATGCAAGTCTG 57.971 43.478 0.00 0.00 0.00 3.51
2091 2547 4.965532 AGACATAACTAGGGATGCAAGTCT 59.034 41.667 0.00 0.00 0.00 3.24
2092 2548 5.283457 AGACATAACTAGGGATGCAAGTC 57.717 43.478 0.00 0.00 0.00 3.01
2093 2549 6.554982 TCATAGACATAACTAGGGATGCAAGT 59.445 38.462 0.00 0.00 0.00 3.16
2094 2550 6.997655 TCATAGACATAACTAGGGATGCAAG 58.002 40.000 0.00 0.00 0.00 4.01
2095 2551 6.994421 TCATAGACATAACTAGGGATGCAA 57.006 37.500 0.00 0.00 0.00 4.08
2096 2552 6.554982 ACTTCATAGACATAACTAGGGATGCA 59.445 38.462 6.14 0.00 0.00 3.96
2097 2553 6.998802 ACTTCATAGACATAACTAGGGATGC 58.001 40.000 6.14 1.14 0.00 3.91
2098 2554 8.424918 ACAACTTCATAGACATAACTAGGGATG 58.575 37.037 0.00 0.00 0.00 3.51
2099 2555 8.424918 CACAACTTCATAGACATAACTAGGGAT 58.575 37.037 0.00 0.00 0.00 3.85
2100 2556 7.618117 TCACAACTTCATAGACATAACTAGGGA 59.382 37.037 0.00 0.00 0.00 4.20
2101 2557 7.782049 TCACAACTTCATAGACATAACTAGGG 58.218 38.462 0.00 0.00 0.00 3.53
2102 2558 9.823647 AATCACAACTTCATAGACATAACTAGG 57.176 33.333 0.00 0.00 0.00 3.02
2142 2598 9.959721 ATCATAGACACAACCTAACTTTGTATT 57.040 29.630 0.00 0.00 35.38 1.89
2143 2599 9.383519 CATCATAGACACAACCTAACTTTGTAT 57.616 33.333 0.00 0.00 35.38 2.29
2167 2623 6.036735 GCTTATTACGTATGGTGTGACAACAT 59.963 38.462 20.94 20.94 44.56 2.71
2171 2627 4.106909 CGCTTATTACGTATGGTGTGACA 58.893 43.478 0.00 0.00 0.00 3.58
2173 2629 4.374843 ACGCTTATTACGTATGGTGTGA 57.625 40.909 0.00 0.00 43.02 3.58
2229 2687 8.457348 ACACCAATGTTTTATGGCGTAATGCA 62.457 38.462 0.00 3.35 40.41 3.96
2232 2690 5.652994 ACACCAATGTTTTATGGCGTAAT 57.347 34.783 0.00 0.00 40.51 1.89
2370 2829 0.540365 ACCAGGCATCAACTTGTGGG 60.540 55.000 0.00 0.00 0.00 4.61
2402 2861 0.947244 GCTTCTTGTGTCCACACCAG 59.053 55.000 7.38 6.04 45.88 4.00
2403 2862 0.546122 AGCTTCTTGTGTCCACACCA 59.454 50.000 7.38 0.00 45.88 4.17
2404 2863 2.417719 CTAGCTTCTTGTGTCCACACC 58.582 52.381 7.38 0.00 45.88 4.16
2446 2905 2.289010 CCAAACACATTTCCTTCAGGCC 60.289 50.000 0.00 0.00 34.44 5.19
2454 2913 3.259123 AGGCTTCATCCAAACACATTTCC 59.741 43.478 0.00 0.00 0.00 3.13
2493 2957 7.879677 GTCCAAGATTCCTTTTCAAATCCATTT 59.120 33.333 0.00 0.00 33.29 2.32
2499 2963 6.983906 ACAGTCCAAGATTCCTTTTCAAAT 57.016 33.333 0.00 0.00 0.00 2.32
2503 2967 5.106515 GCAGTACAGTCCAAGATTCCTTTTC 60.107 44.000 0.00 0.00 0.00 2.29
2509 2973 3.929610 GTCAGCAGTACAGTCCAAGATTC 59.070 47.826 0.00 0.00 0.00 2.52
2516 2980 2.448453 AGTAGGTCAGCAGTACAGTCC 58.552 52.381 0.00 0.00 0.00 3.85
2526 2990 2.823154 CCTCCAGCTATAGTAGGTCAGC 59.177 54.545 0.84 0.00 33.57 4.26
2531 2995 2.823154 GCACTCCTCCAGCTATAGTAGG 59.177 54.545 0.84 4.07 0.00 3.18
2532 2996 2.823154 GGCACTCCTCCAGCTATAGTAG 59.177 54.545 0.84 0.00 0.00 2.57
2536 3293 0.106167 ACGGCACTCCTCCAGCTATA 60.106 55.000 0.00 0.00 0.00 1.31
2544 3301 0.878961 ACAAAACGACGGCACTCCTC 60.879 55.000 0.00 0.00 0.00 3.71
2553 3310 6.128499 TGGGAATTACTAATCACAAAACGACG 60.128 38.462 0.00 0.00 0.00 5.12
2761 3539 1.811645 TTCATGTCCTCGTCGTGCCA 61.812 55.000 0.00 0.00 0.00 4.92
2767 3545 2.767505 AGTTTGGTTCATGTCCTCGTC 58.232 47.619 10.06 1.48 0.00 4.20
2769 3547 3.435671 GGTTAGTTTGGTTCATGTCCTCG 59.564 47.826 10.06 0.00 0.00 4.63
2776 3554 6.636454 TCATCTAGGGTTAGTTTGGTTCAT 57.364 37.500 0.00 0.00 0.00 2.57
2813 3591 7.121315 CGAGTATCCAGTATCCATGAAGTATCA 59.879 40.741 0.00 0.00 40.57 2.15
2829 3607 2.417516 CACCGGCCGAGTATCCAG 59.582 66.667 30.73 9.82 0.00 3.86
2830 3608 2.363276 ACACCGGCCGAGTATCCA 60.363 61.111 30.73 0.00 0.00 3.41
2831 3609 2.106332 CACACCGGCCGAGTATCC 59.894 66.667 30.73 0.00 0.00 2.59
2832 3610 0.390735 AAACACACCGGCCGAGTATC 60.391 55.000 30.73 0.00 0.00 2.24
2833 3611 0.390735 GAAACACACCGGCCGAGTAT 60.391 55.000 30.73 11.73 0.00 2.12
2834 3612 1.005867 GAAACACACCGGCCGAGTA 60.006 57.895 30.73 0.00 0.00 2.59
2835 3613 2.280592 GAAACACACCGGCCGAGT 60.281 61.111 30.73 22.26 0.00 4.18
2843 3621 2.285977 GGACCATATCCGAAACACACC 58.714 52.381 0.00 0.00 37.88 4.16
2876 3654 2.697229 AGGGTTGTATCGCTACTTACCC 59.303 50.000 22.24 22.24 44.88 3.69
2905 3683 1.521423 GACGGAAAATATGAGGCGTCG 59.479 52.381 1.39 0.00 0.00 5.12
2923 3701 1.377856 GGAGGAAAGCAGCAGGGAC 60.378 63.158 0.00 0.00 0.00 4.46
2927 3705 1.449246 CTCGGGAGGAAAGCAGCAG 60.449 63.158 0.00 0.00 0.00 4.24
3029 3807 9.295825 GGAGATGAGATCATAAGAAGACTAGAA 57.704 37.037 0.00 0.00 36.57 2.10
3030 3808 8.668653 AGGAGATGAGATCATAAGAAGACTAGA 58.331 37.037 0.00 0.00 36.57 2.43
3031 3809 8.868522 AGGAGATGAGATCATAAGAAGACTAG 57.131 38.462 0.00 0.00 36.57 2.57
3032 3810 8.668653 AGAGGAGATGAGATCATAAGAAGACTA 58.331 37.037 0.00 0.00 36.57 2.59
3033 3811 7.449395 CAGAGGAGATGAGATCATAAGAAGACT 59.551 40.741 0.00 0.00 36.57 3.24
3034 3812 7.448161 TCAGAGGAGATGAGATCATAAGAAGAC 59.552 40.741 0.00 0.00 36.57 3.01
3035 3813 7.525165 TCAGAGGAGATGAGATCATAAGAAGA 58.475 38.462 0.00 0.00 36.57 2.87
3084 3862 3.244770 CCTTAGGTTGGTAGGTTCAGCAA 60.245 47.826 0.00 0.00 33.73 3.91
3140 3918 4.766891 GTCCATAGGAGAGGATCAGAAGAG 59.233 50.000 0.00 0.00 37.82 2.85
3142 3920 4.739793 AGTCCATAGGAGAGGATCAGAAG 58.260 47.826 0.00 0.00 37.82 2.85
3206 3984 7.793927 ATTCGCCATTTTGGAAAAGTTTTAA 57.206 28.000 0.00 0.00 40.96 1.52
3269 4047 2.613977 GCACCTAGAATGCACAGACACT 60.614 50.000 12.56 0.00 42.88 3.55
3272 4050 1.373570 GGCACCTAGAATGCACAGAC 58.626 55.000 17.50 0.53 45.27 3.51
3523 4464 6.655078 AAATGCCAAGTCAAACAGTAGATT 57.345 33.333 0.00 0.00 0.00 2.40
3524 4465 7.575720 GCTTAAATGCCAAGTCAAACAGTAGAT 60.576 37.037 0.00 0.00 0.00 1.98
3525 4466 6.293955 GCTTAAATGCCAAGTCAAACAGTAGA 60.294 38.462 0.00 0.00 0.00 2.59
3526 4467 5.858581 GCTTAAATGCCAAGTCAAACAGTAG 59.141 40.000 0.00 0.00 0.00 2.57
3527 4468 5.768317 GCTTAAATGCCAAGTCAAACAGTA 58.232 37.500 0.00 0.00 0.00 2.74
3699 4640 1.000955 GACTTCTTGAACAGGAGGCGA 59.999 52.381 0.00 0.00 31.02 5.54
3833 4774 3.809279 CCAAATTTTGGTTCTTCAGCACC 59.191 43.478 18.34 0.00 45.93 5.01
3971 4912 3.495001 GCGGTAGCTTTTGGATAGATGAC 59.505 47.826 0.00 0.00 41.01 3.06
3992 4933 1.006922 GAAGTGGGCTTGCAGTTGC 60.007 57.895 0.00 0.00 42.50 4.17
4042 4983 6.024552 TCTGTTGAAAGCTTCACAAAACTT 57.975 33.333 16.73 0.00 39.87 2.66
4092 5033 6.525578 CTGAAGACAGGTACAGGTAATACA 57.474 41.667 0.00 0.00 40.14 2.29
4107 5048 5.359194 GGAACTCATTATCCCTGAAGACA 57.641 43.478 0.00 0.00 0.00 3.41
4119 5060 5.304686 ACAACAAGTCAGGGAACTCATTA 57.695 39.130 0.00 0.00 40.21 1.90
4130 5071 5.335191 GGAAGCATAAGGAACAACAAGTCAG 60.335 44.000 0.00 0.00 0.00 3.51
4189 5133 7.915397 CAGTTAAGAACACTGCATAACAAGTTT 59.085 33.333 6.83 0.00 35.52 2.66
4341 5285 4.827692 TGCAAGGAACACGTACATCTAAT 58.172 39.130 0.00 0.00 0.00 1.73
4342 5286 4.260139 TGCAAGGAACACGTACATCTAA 57.740 40.909 0.00 0.00 0.00 2.10
4343 5287 3.945981 TGCAAGGAACACGTACATCTA 57.054 42.857 0.00 0.00 0.00 1.98
4344 5288 2.831685 TGCAAGGAACACGTACATCT 57.168 45.000 0.00 0.00 0.00 2.90
4345 5289 5.293324 TCAATATGCAAGGAACACGTACATC 59.707 40.000 0.00 0.00 0.00 3.06
4346 5290 5.182487 TCAATATGCAAGGAACACGTACAT 58.818 37.500 0.00 0.00 0.00 2.29
4347 5291 4.570930 TCAATATGCAAGGAACACGTACA 58.429 39.130 0.00 0.00 0.00 2.90
4348 5292 5.734855 ATCAATATGCAAGGAACACGTAC 57.265 39.130 0.00 0.00 0.00 3.67
4349 5293 7.269316 TCTAATCAATATGCAAGGAACACGTA 58.731 34.615 0.00 0.00 0.00 3.57
4350 5294 6.112734 TCTAATCAATATGCAAGGAACACGT 58.887 36.000 0.00 0.00 0.00 4.49
4351 5295 6.603237 TCTAATCAATATGCAAGGAACACG 57.397 37.500 0.00 0.00 0.00 4.49
4352 5296 7.934457 ACATCTAATCAATATGCAAGGAACAC 58.066 34.615 0.00 0.00 0.00 3.32
4353 5297 9.056005 GTACATCTAATCAATATGCAAGGAACA 57.944 33.333 0.00 0.00 0.00 3.18
4354 5298 8.223769 CGTACATCTAATCAATATGCAAGGAAC 58.776 37.037 0.00 0.00 0.00 3.62
4355 5299 7.931407 ACGTACATCTAATCAATATGCAAGGAA 59.069 33.333 0.00 0.00 0.00 3.36
4356 5300 7.384932 CACGTACATCTAATCAATATGCAAGGA 59.615 37.037 0.00 0.00 0.00 3.36
4357 5301 7.171508 ACACGTACATCTAATCAATATGCAAGG 59.828 37.037 0.00 0.00 0.00 3.61
4358 5302 8.076714 ACACGTACATCTAATCAATATGCAAG 57.923 34.615 0.00 0.00 0.00 4.01
4359 5303 8.432110 AACACGTACATCTAATCAATATGCAA 57.568 30.769 0.00 0.00 0.00 4.08
4360 5304 7.170828 GGAACACGTACATCTAATCAATATGCA 59.829 37.037 0.00 0.00 0.00 3.96
4361 5305 7.385205 AGGAACACGTACATCTAATCAATATGC 59.615 37.037 0.00 0.00 0.00 3.14
4362 5306 8.818141 AGGAACACGTACATCTAATCAATATG 57.182 34.615 0.00 0.00 0.00 1.78
4363 5307 9.261180 CAAGGAACACGTACATCTAATCAATAT 57.739 33.333 0.00 0.00 0.00 1.28
4364 5308 7.223971 GCAAGGAACACGTACATCTAATCAATA 59.776 37.037 0.00 0.00 0.00 1.90
4365 5309 6.037172 GCAAGGAACACGTACATCTAATCAAT 59.963 38.462 0.00 0.00 0.00 2.57
4366 5310 5.350365 GCAAGGAACACGTACATCTAATCAA 59.650 40.000 0.00 0.00 0.00 2.57
4367 5311 4.868171 GCAAGGAACACGTACATCTAATCA 59.132 41.667 0.00 0.00 0.00 2.57
4368 5312 4.868171 TGCAAGGAACACGTACATCTAATC 59.132 41.667 0.00 0.00 0.00 1.75
4409 5353 6.376978 CCAAGTGACTCAATTTCATGTTCTC 58.623 40.000 0.00 0.00 0.00 2.87
4698 5642 3.141398 GACAAGTCAACAAGGCAGATCA 58.859 45.455 0.00 0.00 0.00 2.92
4703 5647 2.682856 GTCTTGACAAGTCAACAAGGCA 59.317 45.455 14.75 0.00 43.90 4.75
4705 5649 4.963276 TTGTCTTGACAAGTCAACAAGG 57.037 40.909 19.61 3.04 43.90 3.61
4728 5672 7.943079 TTGGAATGCAAGAGAGATCATTAAA 57.057 32.000 0.00 0.00 30.19 1.52
4769 5713 1.927487 AAGGAAGCATGTGCATGGAA 58.073 45.000 13.28 0.00 45.16 3.53
4801 5746 9.533253 CTTAGAACCACTTCAACATTGATTTTT 57.467 29.630 0.00 0.00 37.00 1.94
4861 5806 8.952278 TGCAACATTTAATAACCAAGTACCTAG 58.048 33.333 0.00 0.00 0.00 3.02
4996 5942 6.183361 TGGAAATGATGAGTTCTAGAGATGGG 60.183 42.308 0.00 0.00 0.00 4.00
5280 6236 8.000780 ACCAAAAGGTATAAATGAGATGAAGC 57.999 34.615 0.00 0.00 0.00 3.86
5343 6300 2.814336 GGAAGCTAGGCCATTAAATCCG 59.186 50.000 5.01 0.00 0.00 4.18
5404 6378 7.442062 ACTTGTTTTGGAGGCAATATTTTCTTG 59.558 33.333 0.00 0.00 0.00 3.02
5474 6454 2.156098 TGCCACCTTCGTCCAAAATAC 58.844 47.619 0.00 0.00 0.00 1.89
5481 6461 1.207329 ACTAGATTGCCACCTTCGTCC 59.793 52.381 0.00 0.00 0.00 4.79
5601 6582 5.334182 GCCACTAGTTCTAGAAGTTTTGCAC 60.334 44.000 17.79 7.08 0.00 4.57
5602 6583 4.755123 GCCACTAGTTCTAGAAGTTTTGCA 59.245 41.667 17.79 0.00 0.00 4.08
5620 6601 5.133221 AGCATATTTCTAAATTCCGCCACT 58.867 37.500 0.00 0.00 0.00 4.00
5625 6606 7.482654 TCTGTGAGCATATTTCTAAATTCCG 57.517 36.000 0.00 0.00 0.00 4.30
5736 6743 5.532406 CCACCACTGGAAAGATATAATGTGG 59.468 44.000 0.71 0.00 46.28 4.17
5758 6765 7.631007 TCAGTGAGAAAGAGTAGTACTATCCA 58.369 38.462 5.75 1.31 0.00 3.41
5862 6869 9.125026 AGTTCTTTCACAGTTAACAGAATCAAT 57.875 29.630 8.61 0.00 0.00 2.57
5870 6877 5.521010 CGGTGTAGTTCTTTCACAGTTAACA 59.479 40.000 8.61 0.00 34.27 2.41
5871 6878 5.750067 TCGGTGTAGTTCTTTCACAGTTAAC 59.250 40.000 0.00 0.00 34.27 2.01
5872 6879 5.904941 TCGGTGTAGTTCTTTCACAGTTAA 58.095 37.500 0.00 0.00 34.27 2.01
5873 6880 5.068198 ACTCGGTGTAGTTCTTTCACAGTTA 59.932 40.000 0.00 0.00 34.27 2.24
5874 6881 4.142004 ACTCGGTGTAGTTCTTTCACAGTT 60.142 41.667 0.00 0.00 34.27 3.16
5875 6882 3.383825 ACTCGGTGTAGTTCTTTCACAGT 59.616 43.478 0.00 0.00 34.27 3.55
5876 6883 3.978687 ACTCGGTGTAGTTCTTTCACAG 58.021 45.455 0.00 0.00 34.27 3.66
5877 6884 4.395959 AACTCGGTGTAGTTCTTTCACA 57.604 40.909 0.00 0.00 34.60 3.58
5878 6885 5.048507 AGAAACTCGGTGTAGTTCTTTCAC 58.951 41.667 0.00 0.00 38.76 3.18
5879 6886 5.272283 AGAAACTCGGTGTAGTTCTTTCA 57.728 39.130 0.00 0.00 38.76 2.69
5880 6887 4.685165 GGAGAAACTCGGTGTAGTTCTTTC 59.315 45.833 0.00 0.00 38.76 2.62
5881 6888 4.344390 AGGAGAAACTCGGTGTAGTTCTTT 59.656 41.667 0.00 0.00 38.76 2.52
5882 6889 3.896272 AGGAGAAACTCGGTGTAGTTCTT 59.104 43.478 0.00 0.00 38.76 2.52
5883 6890 3.498334 AGGAGAAACTCGGTGTAGTTCT 58.502 45.455 0.00 0.00 38.76 3.01
5884 6891 3.835779 GAGGAGAAACTCGGTGTAGTTC 58.164 50.000 0.00 0.00 38.76 3.01
5885 6892 3.938289 GAGGAGAAACTCGGTGTAGTT 57.062 47.619 0.00 0.00 41.46 2.24
5916 6923 8.942338 AGCATAAGATCTGTTGTTAAATACGA 57.058 30.769 0.00 0.00 0.00 3.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.