Multiple sequence alignment - TraesCS6A01G138800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G138800 chr6A 100.000 3053 0 0 1 3053 110344023 110340971 0.000000e+00 5638
1 TraesCS6A01G138800 chr6A 96.993 2062 56 4 994 3053 250719854 250717797 0.000000e+00 3459
2 TraesCS6A01G138800 chr6A 96.980 2053 56 4 1001 3053 34294681 34296727 0.000000e+00 3443
3 TraesCS6A01G138800 chr6A 96.617 1064 32 4 397 1459 272124250 272125310 0.000000e+00 1762
4 TraesCS6A01G138800 chr2A 96.993 2062 56 4 994 3053 355393245 355391188 0.000000e+00 3459
5 TraesCS6A01G138800 chr2A 96.304 2056 69 3 1001 3053 759865035 759867086 0.000000e+00 3369
6 TraesCS6A01G138800 chr1A 96.864 2041 60 2 1013 3053 537076001 537078037 0.000000e+00 3411
7 TraesCS6A01G138800 chr1A 96.722 2044 56 5 1016 3053 245533910 245531872 0.000000e+00 3393
8 TraesCS6A01G138800 chr1A 96.249 2053 73 2 1001 3053 216451037 216453085 0.000000e+00 3362
9 TraesCS6A01G138800 chr1A 89.167 240 14 7 411 641 208902121 208901885 3.850000e-74 289
10 TraesCS6A01G138800 chr3A 96.304 2056 69 3 1001 3053 697571081 697573132 0.000000e+00 3369
11 TraesCS6A01G138800 chr5B 95.928 2063 79 3 991 3053 184777933 184775876 0.000000e+00 3339
12 TraesCS6A01G138800 chr4A 95.887 778 31 1 521 1298 326140238 326141014 0.000000e+00 1258
13 TraesCS6A01G138800 chr1B 90.741 594 17 18 410 1001 322947205 322946648 0.000000e+00 758
14 TraesCS6A01G138800 chr6B 90.754 411 26 9 1 406 175717202 175716799 3.460000e-149 538
15 TraesCS6A01G138800 chr6D 91.206 398 25 6 1 393 91563771 91563379 1.610000e-147 532
16 TraesCS6A01G138800 chr2D 88.417 259 20 9 411 662 381304237 381303982 1.380000e-78 303
17 TraesCS6A01G138800 chr2D 93.627 204 8 4 411 610 120544465 120544263 1.780000e-77 300
18 TraesCS6A01G138800 chr1D 93.269 208 9 4 411 614 207152474 207152680 4.950000e-78 302
19 TraesCS6A01G138800 chr5D 90.830 229 14 6 409 632 463019166 463019392 1.780000e-77 300
20 TraesCS6A01G138800 chr7D 92.754 207 11 3 411 614 32624803 32625008 2.300000e-76 296
21 TraesCS6A01G138800 chr3D 87.597 258 23 8 411 662 374977260 374977006 1.070000e-74 291


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G138800 chr6A 110340971 110344023 3052 True 5638 5638 100.000 1 3053 1 chr6A.!!$R1 3052
1 TraesCS6A01G138800 chr6A 250717797 250719854 2057 True 3459 3459 96.993 994 3053 1 chr6A.!!$R2 2059
2 TraesCS6A01G138800 chr6A 34294681 34296727 2046 False 3443 3443 96.980 1001 3053 1 chr6A.!!$F1 2052
3 TraesCS6A01G138800 chr6A 272124250 272125310 1060 False 1762 1762 96.617 397 1459 1 chr6A.!!$F2 1062
4 TraesCS6A01G138800 chr2A 355391188 355393245 2057 True 3459 3459 96.993 994 3053 1 chr2A.!!$R1 2059
5 TraesCS6A01G138800 chr2A 759865035 759867086 2051 False 3369 3369 96.304 1001 3053 1 chr2A.!!$F1 2052
6 TraesCS6A01G138800 chr1A 537076001 537078037 2036 False 3411 3411 96.864 1013 3053 1 chr1A.!!$F2 2040
7 TraesCS6A01G138800 chr1A 245531872 245533910 2038 True 3393 3393 96.722 1016 3053 1 chr1A.!!$R2 2037
8 TraesCS6A01G138800 chr1A 216451037 216453085 2048 False 3362 3362 96.249 1001 3053 1 chr1A.!!$F1 2052
9 TraesCS6A01G138800 chr3A 697571081 697573132 2051 False 3369 3369 96.304 1001 3053 1 chr3A.!!$F1 2052
10 TraesCS6A01G138800 chr5B 184775876 184777933 2057 True 3339 3339 95.928 991 3053 1 chr5B.!!$R1 2062
11 TraesCS6A01G138800 chr4A 326140238 326141014 776 False 1258 1258 95.887 521 1298 1 chr4A.!!$F1 777
12 TraesCS6A01G138800 chr1B 322946648 322947205 557 True 758 758 90.741 410 1001 1 chr1B.!!$R1 591

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
330 331 0.105964 CGGCGATTTAGATCACCCCA 59.894 55.0 0.0 0.0 31.96 4.96 F
1526 1528 0.036022 GCTCTTCAGCAGGGTGACTT 59.964 55.0 0.0 0.0 46.06 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1674 1676 0.611714 GGGGCTCAAACTCCTTACGA 59.388 55.000 0.0 0.0 0.0 3.43 R
2951 2957 1.944024 AGCACGAAAAACACGAATGGA 59.056 42.857 0.0 0.0 34.7 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.840831 TGATGTACTCAGCTGCACC 57.159 52.632 9.47 0.00 0.00 5.01
19 20 1.269958 TGATGTACTCAGCTGCACCT 58.730 50.000 9.47 0.00 0.00 4.00
20 21 2.456577 TGATGTACTCAGCTGCACCTA 58.543 47.619 9.47 0.00 0.00 3.08
21 22 2.428530 TGATGTACTCAGCTGCACCTAG 59.571 50.000 9.47 2.99 0.00 3.02
22 23 1.924731 TGTACTCAGCTGCACCTAGT 58.075 50.000 9.47 9.58 0.00 2.57
23 24 2.248248 TGTACTCAGCTGCACCTAGTT 58.752 47.619 9.47 0.00 0.00 2.24
24 25 2.632996 TGTACTCAGCTGCACCTAGTTT 59.367 45.455 9.47 0.00 0.00 2.66
25 26 2.464157 ACTCAGCTGCACCTAGTTTC 57.536 50.000 9.47 0.00 0.00 2.78
26 27 1.002544 ACTCAGCTGCACCTAGTTTCC 59.997 52.381 9.47 0.00 0.00 3.13
27 28 1.002430 CTCAGCTGCACCTAGTTTCCA 59.998 52.381 9.47 0.00 0.00 3.53
28 29 1.002430 TCAGCTGCACCTAGTTTCCAG 59.998 52.381 9.47 0.00 0.00 3.86
29 30 1.002430 CAGCTGCACCTAGTTTCCAGA 59.998 52.381 0.00 0.00 0.00 3.86
30 31 1.912043 AGCTGCACCTAGTTTCCAGAT 59.088 47.619 1.02 0.00 0.00 2.90
31 32 2.307098 AGCTGCACCTAGTTTCCAGATT 59.693 45.455 1.02 0.00 0.00 2.40
32 33 3.519510 AGCTGCACCTAGTTTCCAGATTA 59.480 43.478 1.02 0.00 0.00 1.75
33 34 3.873952 GCTGCACCTAGTTTCCAGATTAG 59.126 47.826 0.00 0.00 0.00 1.73
34 35 4.624125 GCTGCACCTAGTTTCCAGATTAGT 60.624 45.833 0.00 0.00 0.00 2.24
35 36 5.491982 CTGCACCTAGTTTCCAGATTAGTT 58.508 41.667 0.00 0.00 0.00 2.24
36 37 6.614694 TGCACCTAGTTTCCAGATTAGTTA 57.385 37.500 0.00 0.00 0.00 2.24
37 38 7.195374 TGCACCTAGTTTCCAGATTAGTTAT 57.805 36.000 0.00 0.00 0.00 1.89
38 39 7.272978 TGCACCTAGTTTCCAGATTAGTTATC 58.727 38.462 0.00 0.00 0.00 1.75
39 40 7.125811 TGCACCTAGTTTCCAGATTAGTTATCT 59.874 37.037 0.00 0.00 44.60 1.98
40 41 7.654116 GCACCTAGTTTCCAGATTAGTTATCTC 59.346 40.741 0.00 0.00 41.78 2.75
41 42 8.919145 CACCTAGTTTCCAGATTAGTTATCTCT 58.081 37.037 0.00 0.00 41.78 3.10
48 49 9.561069 TTTCCAGATTAGTTATCTCTAATTGGC 57.439 33.333 14.85 0.00 41.78 4.52
49 50 8.262601 TCCAGATTAGTTATCTCTAATTGGCA 57.737 34.615 14.85 0.00 41.78 4.92
50 51 8.370940 TCCAGATTAGTTATCTCTAATTGGCAG 58.629 37.037 14.85 0.00 41.78 4.85
51 52 8.370940 CCAGATTAGTTATCTCTAATTGGCAGA 58.629 37.037 0.00 0.00 41.78 4.26
52 53 9.941325 CAGATTAGTTATCTCTAATTGGCAGAT 57.059 33.333 8.18 8.18 41.78 2.90
55 56 8.908786 TTAGTTATCTCTAATTGGCAGATTGG 57.091 34.615 8.34 3.41 0.00 3.16
56 57 6.904626 AGTTATCTCTAATTGGCAGATTGGT 58.095 36.000 8.34 0.00 0.00 3.67
57 58 7.349598 AGTTATCTCTAATTGGCAGATTGGTT 58.650 34.615 8.34 0.00 0.00 3.67
58 59 7.284034 AGTTATCTCTAATTGGCAGATTGGTTG 59.716 37.037 8.34 2.48 0.00 3.77
59 60 4.922206 TCTCTAATTGGCAGATTGGTTGT 58.078 39.130 5.52 0.00 0.00 3.32
60 61 6.061022 TCTCTAATTGGCAGATTGGTTGTA 57.939 37.500 5.52 0.00 0.00 2.41
61 62 5.880332 TCTCTAATTGGCAGATTGGTTGTAC 59.120 40.000 5.52 0.00 0.00 2.90
62 63 5.815581 TCTAATTGGCAGATTGGTTGTACT 58.184 37.500 0.00 0.00 0.00 2.73
63 64 6.953101 TCTAATTGGCAGATTGGTTGTACTA 58.047 36.000 0.00 0.00 0.00 1.82
64 65 7.398829 TCTAATTGGCAGATTGGTTGTACTAA 58.601 34.615 0.00 0.00 0.00 2.24
65 66 8.052748 TCTAATTGGCAGATTGGTTGTACTAAT 58.947 33.333 0.00 0.00 31.69 1.73
66 67 9.337396 CTAATTGGCAGATTGGTTGTACTAATA 57.663 33.333 0.00 0.00 29.04 0.98
67 68 8.766994 AATTGGCAGATTGGTTGTACTAATAT 57.233 30.769 0.00 0.00 29.04 1.28
68 69 7.801716 TTGGCAGATTGGTTGTACTAATATC 57.198 36.000 0.00 0.00 29.04 1.63
69 70 6.296026 TGGCAGATTGGTTGTACTAATATCC 58.704 40.000 0.00 0.00 29.04 2.59
70 71 6.126623 TGGCAGATTGGTTGTACTAATATCCA 60.127 38.462 0.00 0.00 29.04 3.41
71 72 6.770785 GGCAGATTGGTTGTACTAATATCCAA 59.229 38.462 0.00 0.00 38.90 3.53
72 73 7.284489 GGCAGATTGGTTGTACTAATATCCAAA 59.716 37.037 0.00 0.00 38.23 3.28
73 74 8.850156 GCAGATTGGTTGTACTAATATCCAAAT 58.150 33.333 0.00 0.00 38.23 2.32
122 123 8.563289 TGAATTTTGTTGTACACGTAATTTCC 57.437 30.769 0.00 0.00 0.00 3.13
123 124 8.188799 TGAATTTTGTTGTACACGTAATTTCCA 58.811 29.630 0.00 0.00 0.00 3.53
124 125 8.568732 AATTTTGTTGTACACGTAATTTCCAG 57.431 30.769 0.00 0.00 0.00 3.86
125 126 6.922247 TTTGTTGTACACGTAATTTCCAGA 57.078 33.333 0.00 0.00 0.00 3.86
126 127 7.499321 TTTGTTGTACACGTAATTTCCAGAT 57.501 32.000 0.00 0.00 0.00 2.90
127 128 7.499321 TTGTTGTACACGTAATTTCCAGATT 57.501 32.000 0.00 0.00 0.00 2.40
128 129 8.604640 TTGTTGTACACGTAATTTCCAGATTA 57.395 30.769 0.00 0.00 0.00 1.75
129 130 8.246908 TGTTGTACACGTAATTTCCAGATTAG 57.753 34.615 0.00 0.00 0.00 1.73
130 131 7.874016 TGTTGTACACGTAATTTCCAGATTAGT 59.126 33.333 0.00 0.00 0.00 2.24
131 132 8.715088 GTTGTACACGTAATTTCCAGATTAGTT 58.285 33.333 0.00 0.00 0.00 2.24
132 133 8.246908 TGTACACGTAATTTCCAGATTAGTTG 57.753 34.615 0.00 0.00 0.00 3.16
133 134 7.874016 TGTACACGTAATTTCCAGATTAGTTGT 59.126 33.333 0.00 0.00 0.00 3.32
134 135 7.360575 ACACGTAATTTCCAGATTAGTTGTC 57.639 36.000 0.00 0.00 0.00 3.18
135 136 7.159372 ACACGTAATTTCCAGATTAGTTGTCT 58.841 34.615 0.00 0.00 0.00 3.41
136 137 7.331193 ACACGTAATTTCCAGATTAGTTGTCTC 59.669 37.037 0.00 0.00 0.00 3.36
137 138 7.545965 CACGTAATTTCCAGATTAGTTGTCTCT 59.454 37.037 0.00 0.00 0.00 3.10
138 139 8.746530 ACGTAATTTCCAGATTAGTTGTCTCTA 58.253 33.333 0.00 0.00 0.00 2.43
139 140 9.021863 CGTAATTTCCAGATTAGTTGTCTCTAC 57.978 37.037 0.00 0.00 0.00 2.59
143 144 9.660180 ATTTCCAGATTAGTTGTCTCTACTTTC 57.340 33.333 0.00 0.00 0.00 2.62
144 145 7.171630 TCCAGATTAGTTGTCTCTACTTTCC 57.828 40.000 0.00 0.00 0.00 3.13
145 146 6.724441 TCCAGATTAGTTGTCTCTACTTTCCA 59.276 38.462 0.00 0.00 0.00 3.53
146 147 7.038659 CCAGATTAGTTGTCTCTACTTTCCAG 58.961 42.308 0.00 0.00 0.00 3.86
147 148 7.093727 CCAGATTAGTTGTCTCTACTTTCCAGA 60.094 40.741 0.00 0.00 0.00 3.86
148 149 8.474025 CAGATTAGTTGTCTCTACTTTCCAGAT 58.526 37.037 0.00 0.00 0.00 2.90
149 150 9.041354 AGATTAGTTGTCTCTACTTTCCAGATT 57.959 33.333 0.00 0.00 0.00 2.40
150 151 9.660180 GATTAGTTGTCTCTACTTTCCAGATTT 57.340 33.333 0.00 0.00 0.00 2.17
151 152 8.833231 TTAGTTGTCTCTACTTTCCAGATTTG 57.167 34.615 0.00 0.00 0.00 2.32
152 153 6.234177 AGTTGTCTCTACTTTCCAGATTTGG 58.766 40.000 0.00 0.00 46.49 3.28
153 154 5.825593 TGTCTCTACTTTCCAGATTTGGT 57.174 39.130 1.59 0.00 45.26 3.67
154 155 5.551233 TGTCTCTACTTTCCAGATTTGGTG 58.449 41.667 1.59 0.00 45.26 4.17
155 156 5.071788 TGTCTCTACTTTCCAGATTTGGTGT 59.928 40.000 1.59 3.38 45.26 4.16
156 157 6.269077 TGTCTCTACTTTCCAGATTTGGTGTA 59.731 38.462 1.59 4.29 45.26 2.90
157 158 7.038302 TGTCTCTACTTTCCAGATTTGGTGTAT 60.038 37.037 1.59 0.00 45.26 2.29
158 159 7.492994 GTCTCTACTTTCCAGATTTGGTGTATC 59.507 40.741 1.59 0.00 45.26 2.24
159 160 7.180229 TCTCTACTTTCCAGATTTGGTGTATCA 59.820 37.037 1.59 0.00 45.26 2.15
160 161 7.331026 TCTACTTTCCAGATTTGGTGTATCAG 58.669 38.462 1.59 0.00 45.26 2.90
161 162 5.880901 ACTTTCCAGATTTGGTGTATCAGT 58.119 37.500 1.59 0.00 45.26 3.41
162 163 6.306987 ACTTTCCAGATTTGGTGTATCAGTT 58.693 36.000 1.59 0.00 45.26 3.16
163 164 6.207417 ACTTTCCAGATTTGGTGTATCAGTTG 59.793 38.462 1.59 0.00 45.26 3.16
164 165 4.009675 TCCAGATTTGGTGTATCAGTTGC 58.990 43.478 1.59 0.00 45.26 4.17
165 166 3.129287 CCAGATTTGGTGTATCAGTTGCC 59.871 47.826 0.00 0.00 39.79 4.52
166 167 3.758023 CAGATTTGGTGTATCAGTTGCCA 59.242 43.478 0.00 0.00 0.00 4.92
167 168 4.400251 CAGATTTGGTGTATCAGTTGCCAT 59.600 41.667 0.00 0.00 0.00 4.40
168 169 5.589855 CAGATTTGGTGTATCAGTTGCCATA 59.410 40.000 0.00 0.00 0.00 2.74
169 170 5.590259 AGATTTGGTGTATCAGTTGCCATAC 59.410 40.000 0.00 0.00 0.00 2.39
170 171 4.568072 TTGGTGTATCAGTTGCCATACT 57.432 40.909 0.00 0.00 0.00 2.12
171 172 3.872696 TGGTGTATCAGTTGCCATACTG 58.127 45.455 4.78 4.78 45.46 2.74
172 173 3.206150 GGTGTATCAGTTGCCATACTGG 58.794 50.000 9.87 0.00 44.47 4.00
173 174 3.370527 GGTGTATCAGTTGCCATACTGGT 60.371 47.826 9.87 6.37 44.47 4.00
174 175 4.261801 GTGTATCAGTTGCCATACTGGTT 58.738 43.478 9.87 3.08 44.47 3.67
175 176 4.094887 GTGTATCAGTTGCCATACTGGTTG 59.905 45.833 9.87 0.00 44.47 3.77
176 177 1.533625 TCAGTTGCCATACTGGTTGC 58.466 50.000 9.87 0.00 44.47 4.17
177 178 0.527565 CAGTTGCCATACTGGTTGCC 59.472 55.000 0.00 0.00 41.43 4.52
178 179 0.960364 AGTTGCCATACTGGTTGCCG 60.960 55.000 0.00 0.00 40.46 5.69
179 180 0.958382 GTTGCCATACTGGTTGCCGA 60.958 55.000 0.00 0.00 40.46 5.54
180 181 0.958382 TTGCCATACTGGTTGCCGAC 60.958 55.000 0.00 0.00 40.46 4.79
188 189 2.676471 GGTTGCCGACCTTGCCAT 60.676 61.111 0.00 0.00 45.55 4.40
189 190 2.275380 GGTTGCCGACCTTGCCATT 61.275 57.895 0.00 0.00 45.55 3.16
190 191 1.212751 GTTGCCGACCTTGCCATTC 59.787 57.895 0.00 0.00 0.00 2.67
191 192 1.074775 TTGCCGACCTTGCCATTCT 59.925 52.632 0.00 0.00 0.00 2.40
192 193 0.960364 TTGCCGACCTTGCCATTCTC 60.960 55.000 0.00 0.00 0.00 2.87
193 194 2.464459 GCCGACCTTGCCATTCTCG 61.464 63.158 0.00 0.00 0.00 4.04
194 195 1.079127 CCGACCTTGCCATTCTCGT 60.079 57.895 0.00 0.00 0.00 4.18
195 196 1.361668 CCGACCTTGCCATTCTCGTG 61.362 60.000 0.00 0.00 0.00 4.35
196 197 1.796796 GACCTTGCCATTCTCGTGC 59.203 57.895 0.00 0.00 0.00 5.34
197 198 1.648467 GACCTTGCCATTCTCGTGCC 61.648 60.000 0.00 0.00 0.00 5.01
198 199 1.377725 CCTTGCCATTCTCGTGCCT 60.378 57.895 0.00 0.00 0.00 4.75
199 200 1.651240 CCTTGCCATTCTCGTGCCTG 61.651 60.000 0.00 0.00 0.00 4.85
200 201 0.957395 CTTGCCATTCTCGTGCCTGT 60.957 55.000 0.00 0.00 0.00 4.00
201 202 1.236616 TTGCCATTCTCGTGCCTGTG 61.237 55.000 0.00 0.00 0.00 3.66
202 203 3.044059 GCCATTCTCGTGCCTGTGC 62.044 63.158 0.00 0.00 38.26 4.57
203 204 2.401766 CCATTCTCGTGCCTGTGCC 61.402 63.158 0.00 0.00 36.33 5.01
204 205 2.045926 ATTCTCGTGCCTGTGCCC 60.046 61.111 0.00 0.00 36.33 5.36
205 206 3.628646 ATTCTCGTGCCTGTGCCCC 62.629 63.158 0.00 0.00 36.33 5.80
224 225 2.640316 CCCCCTTCGAAAATCCCTAG 57.360 55.000 0.00 0.00 0.00 3.02
225 226 1.477014 CCCCCTTCGAAAATCCCTAGC 60.477 57.143 0.00 0.00 0.00 3.42
226 227 1.211949 CCCCTTCGAAAATCCCTAGCA 59.788 52.381 0.00 0.00 0.00 3.49
227 228 2.289565 CCCTTCGAAAATCCCTAGCAC 58.710 52.381 0.00 0.00 0.00 4.40
228 229 2.092914 CCCTTCGAAAATCCCTAGCACT 60.093 50.000 0.00 0.00 0.00 4.40
229 230 3.198872 CCTTCGAAAATCCCTAGCACTC 58.801 50.000 0.00 0.00 0.00 3.51
230 231 2.579207 TCGAAAATCCCTAGCACTCG 57.421 50.000 0.00 0.00 0.00 4.18
231 232 1.822990 TCGAAAATCCCTAGCACTCGT 59.177 47.619 0.00 0.00 0.00 4.18
232 233 3.018856 TCGAAAATCCCTAGCACTCGTA 58.981 45.455 0.00 0.00 0.00 3.43
233 234 3.635373 TCGAAAATCCCTAGCACTCGTAT 59.365 43.478 0.00 0.00 0.00 3.06
234 235 4.823442 TCGAAAATCCCTAGCACTCGTATA 59.177 41.667 0.00 0.00 0.00 1.47
235 236 4.916249 CGAAAATCCCTAGCACTCGTATAC 59.084 45.833 0.00 0.00 0.00 1.47
236 237 5.506815 CGAAAATCCCTAGCACTCGTATACA 60.507 44.000 3.32 0.00 0.00 2.29
237 238 6.420913 AAAATCCCTAGCACTCGTATACAT 57.579 37.500 3.32 0.00 0.00 2.29
238 239 5.392767 AATCCCTAGCACTCGTATACATG 57.607 43.478 3.32 0.00 0.00 3.21
239 240 3.828921 TCCCTAGCACTCGTATACATGT 58.171 45.455 2.69 2.69 0.00 3.21
240 241 3.568430 TCCCTAGCACTCGTATACATGTG 59.432 47.826 9.11 16.40 0.00 3.21
241 242 3.568430 CCCTAGCACTCGTATACATGTGA 59.432 47.826 21.92 0.00 32.72 3.58
242 243 4.537965 CCTAGCACTCGTATACATGTGAC 58.462 47.826 21.92 15.19 32.72 3.67
243 244 4.276183 CCTAGCACTCGTATACATGTGACT 59.724 45.833 21.92 19.27 32.72 3.41
244 245 4.033990 AGCACTCGTATACATGTGACTG 57.966 45.455 21.92 2.80 32.72 3.51
245 246 3.694566 AGCACTCGTATACATGTGACTGA 59.305 43.478 21.92 7.61 32.72 3.41
246 247 3.791887 GCACTCGTATACATGTGACTGAC 59.208 47.826 21.92 0.00 32.72 3.51
247 248 4.438880 GCACTCGTATACATGTGACTGACT 60.439 45.833 21.92 0.00 32.72 3.41
248 249 5.030936 CACTCGTATACATGTGACTGACTG 58.969 45.833 9.11 4.84 32.72 3.51
249 250 4.941873 ACTCGTATACATGTGACTGACTGA 59.058 41.667 9.11 0.00 0.00 3.41
250 251 5.065346 ACTCGTATACATGTGACTGACTGAG 59.935 44.000 9.11 9.97 0.00 3.35
251 252 5.183228 TCGTATACATGTGACTGACTGAGA 58.817 41.667 9.11 0.00 0.00 3.27
252 253 5.294552 TCGTATACATGTGACTGACTGAGAG 59.705 44.000 9.11 0.00 0.00 3.20
253 254 5.294552 CGTATACATGTGACTGACTGAGAGA 59.705 44.000 9.11 0.00 0.00 3.10
254 255 6.017523 CGTATACATGTGACTGACTGAGAGAT 60.018 42.308 9.11 0.00 0.00 2.75
255 256 4.717233 ACATGTGACTGACTGAGAGATC 57.283 45.455 0.00 0.00 0.00 2.75
256 257 3.446873 ACATGTGACTGACTGAGAGATCC 59.553 47.826 0.00 0.00 0.00 3.36
257 258 2.451490 TGTGACTGACTGAGAGATCCC 58.549 52.381 0.00 0.00 0.00 3.85
258 259 1.403679 GTGACTGACTGAGAGATCCCG 59.596 57.143 0.00 0.00 0.00 5.14
259 260 1.004862 TGACTGACTGAGAGATCCCGT 59.995 52.381 0.00 0.00 0.00 5.28
260 261 1.403679 GACTGACTGAGAGATCCCGTG 59.596 57.143 0.00 0.00 0.00 4.94
261 262 0.743688 CTGACTGAGAGATCCCGTGG 59.256 60.000 0.00 0.00 0.00 4.94
262 263 1.323271 TGACTGAGAGATCCCGTGGC 61.323 60.000 0.00 0.00 0.00 5.01
263 264 1.305297 ACTGAGAGATCCCGTGGCA 60.305 57.895 0.00 0.00 0.00 4.92
264 265 1.142748 CTGAGAGATCCCGTGGCAC 59.857 63.158 7.79 7.79 0.00 5.01
265 266 2.303549 CTGAGAGATCCCGTGGCACC 62.304 65.000 12.86 0.00 0.00 5.01
266 267 2.039624 AGAGATCCCGTGGCACCT 59.960 61.111 12.86 2.13 0.00 4.00
267 268 2.022240 GAGAGATCCCGTGGCACCTC 62.022 65.000 12.86 12.02 0.00 3.85
268 269 3.083997 AGATCCCGTGGCACCTCC 61.084 66.667 12.86 0.00 0.00 4.30
269 270 3.083997 GATCCCGTGGCACCTCCT 61.084 66.667 12.86 0.00 35.26 3.69
270 271 1.760875 GATCCCGTGGCACCTCCTA 60.761 63.158 12.86 0.00 35.26 2.94
271 272 1.749334 GATCCCGTGGCACCTCCTAG 61.749 65.000 12.86 0.00 35.26 3.02
272 273 2.238319 ATCCCGTGGCACCTCCTAGA 62.238 60.000 12.86 0.34 35.26 2.43
273 274 2.427245 CCCGTGGCACCTCCTAGAG 61.427 68.421 12.86 0.00 35.26 2.43
274 275 1.682684 CCGTGGCACCTCCTAGAGT 60.683 63.158 12.86 0.00 35.26 3.24
275 276 1.668101 CCGTGGCACCTCCTAGAGTC 61.668 65.000 12.86 0.00 35.26 3.36
276 277 1.668101 CGTGGCACCTCCTAGAGTCC 61.668 65.000 12.86 0.00 35.26 3.85
277 278 0.324830 GTGGCACCTCCTAGAGTCCT 60.325 60.000 6.29 0.00 35.26 3.85
278 279 1.063867 GTGGCACCTCCTAGAGTCCTA 60.064 57.143 6.29 0.00 35.26 2.94
279 280 1.215673 TGGCACCTCCTAGAGTCCTAG 59.784 57.143 0.00 0.00 41.58 3.02
287 288 2.407340 CTAGAGTCCTAGGCCCCATT 57.593 55.000 2.96 0.00 38.93 3.16
288 289 2.252714 CTAGAGTCCTAGGCCCCATTC 58.747 57.143 2.96 0.00 38.93 2.67
289 290 0.644937 AGAGTCCTAGGCCCCATTCT 59.355 55.000 2.96 0.00 0.00 2.40
290 291 1.866943 AGAGTCCTAGGCCCCATTCTA 59.133 52.381 2.96 0.00 0.00 2.10
291 292 2.456733 AGAGTCCTAGGCCCCATTCTAT 59.543 50.000 2.96 0.00 0.00 1.98
292 293 2.835156 GAGTCCTAGGCCCCATTCTATC 59.165 54.545 2.96 0.00 0.00 2.08
293 294 1.909986 GTCCTAGGCCCCATTCTATCC 59.090 57.143 2.96 0.00 0.00 2.59
294 295 1.203440 TCCTAGGCCCCATTCTATCCC 60.203 57.143 2.96 0.00 0.00 3.85
295 296 1.290134 CTAGGCCCCATTCTATCCCC 58.710 60.000 0.00 0.00 0.00 4.81
296 297 0.881807 TAGGCCCCATTCTATCCCCT 59.118 55.000 0.00 0.00 0.00 4.79
297 298 0.476611 AGGCCCCATTCTATCCCCTC 60.477 60.000 0.00 0.00 0.00 4.30
298 299 1.679898 GCCCCATTCTATCCCCTCG 59.320 63.158 0.00 0.00 0.00 4.63
299 300 1.128188 GCCCCATTCTATCCCCTCGT 61.128 60.000 0.00 0.00 0.00 4.18
300 301 0.977395 CCCCATTCTATCCCCTCGTC 59.023 60.000 0.00 0.00 0.00 4.20
301 302 0.603569 CCCATTCTATCCCCTCGTCG 59.396 60.000 0.00 0.00 0.00 5.12
302 303 1.329256 CCATTCTATCCCCTCGTCGT 58.671 55.000 0.00 0.00 0.00 4.34
303 304 1.269998 CCATTCTATCCCCTCGTCGTC 59.730 57.143 0.00 0.00 0.00 4.20
304 305 2.231529 CATTCTATCCCCTCGTCGTCT 58.768 52.381 0.00 0.00 0.00 4.18
305 306 3.409570 CATTCTATCCCCTCGTCGTCTA 58.590 50.000 0.00 0.00 0.00 2.59
306 307 2.835580 TCTATCCCCTCGTCGTCTAG 57.164 55.000 0.00 0.00 0.00 2.43
307 308 1.158434 CTATCCCCTCGTCGTCTAGC 58.842 60.000 0.00 0.00 0.00 3.42
308 309 0.763652 TATCCCCTCGTCGTCTAGCT 59.236 55.000 0.00 0.00 0.00 3.32
309 310 0.535553 ATCCCCTCGTCGTCTAGCTC 60.536 60.000 0.00 0.00 0.00 4.09
310 311 2.535788 CCCCTCGTCGTCTAGCTCG 61.536 68.421 0.00 0.00 0.00 5.03
311 312 2.325166 CCTCGTCGTCTAGCTCGC 59.675 66.667 0.00 0.00 0.00 5.03
312 313 2.053811 CTCGTCGTCTAGCTCGCG 60.054 66.667 0.00 0.00 0.00 5.87
313 314 3.494454 CTCGTCGTCTAGCTCGCGG 62.494 68.421 6.13 0.00 0.00 6.46
323 324 3.938112 GCTCGCGGCGATTTAGAT 58.062 55.556 26.60 0.00 34.61 1.98
324 325 1.775962 GCTCGCGGCGATTTAGATC 59.224 57.895 26.60 5.57 34.61 2.75
325 326 0.939577 GCTCGCGGCGATTTAGATCA 60.940 55.000 26.60 0.00 34.61 2.92
326 327 0.778815 CTCGCGGCGATTTAGATCAC 59.221 55.000 26.60 0.00 34.61 3.06
327 328 0.596600 TCGCGGCGATTTAGATCACC 60.597 55.000 22.69 0.00 32.25 4.02
328 329 1.557443 CGCGGCGATTTAGATCACCC 61.557 60.000 19.16 0.00 31.96 4.61
329 330 1.228657 GCGGCGATTTAGATCACCCC 61.229 60.000 12.98 0.00 31.96 4.95
330 331 0.105964 CGGCGATTTAGATCACCCCA 59.894 55.000 0.00 0.00 31.96 4.96
331 332 1.270839 CGGCGATTTAGATCACCCCAT 60.271 52.381 0.00 0.00 31.96 4.00
332 333 2.154462 GGCGATTTAGATCACCCCATG 58.846 52.381 0.00 0.00 29.81 3.66
333 334 2.224523 GGCGATTTAGATCACCCCATGA 60.225 50.000 0.00 0.00 43.13 3.07
334 335 3.476552 GCGATTTAGATCACCCCATGAA 58.523 45.455 0.00 0.00 41.93 2.57
335 336 3.499918 GCGATTTAGATCACCCCATGAAG 59.500 47.826 0.00 0.00 41.93 3.02
336 337 4.708177 CGATTTAGATCACCCCATGAAGT 58.292 43.478 0.00 0.00 41.93 3.01
337 338 4.752101 CGATTTAGATCACCCCATGAAGTC 59.248 45.833 0.00 0.00 41.93 3.01
338 339 5.453903 CGATTTAGATCACCCCATGAAGTCT 60.454 44.000 0.00 0.00 41.93 3.24
339 340 4.760530 TTAGATCACCCCATGAAGTCTG 57.239 45.455 0.00 0.00 41.93 3.51
340 341 2.837947 AGATCACCCCATGAAGTCTGA 58.162 47.619 0.00 0.00 41.93 3.27
341 342 3.184628 AGATCACCCCATGAAGTCTGAA 58.815 45.455 0.00 0.00 41.93 3.02
342 343 3.588842 AGATCACCCCATGAAGTCTGAAA 59.411 43.478 0.00 0.00 41.93 2.69
343 344 3.874383 TCACCCCATGAAGTCTGAAAA 57.126 42.857 0.00 0.00 33.02 2.29
344 345 4.177537 TCACCCCATGAAGTCTGAAAAA 57.822 40.909 0.00 0.00 33.02 1.94
377 378 6.607735 AAAAACAATGATGCAAAACAGAGG 57.392 33.333 0.00 0.00 0.00 3.69
378 379 3.947910 ACAATGATGCAAAACAGAGGG 57.052 42.857 0.00 0.00 0.00 4.30
379 380 3.499338 ACAATGATGCAAAACAGAGGGA 58.501 40.909 0.00 0.00 0.00 4.20
380 381 3.508793 ACAATGATGCAAAACAGAGGGAG 59.491 43.478 0.00 0.00 0.00 4.30
381 382 3.726557 ATGATGCAAAACAGAGGGAGA 57.273 42.857 0.00 0.00 0.00 3.71
382 383 3.063510 TGATGCAAAACAGAGGGAGAG 57.936 47.619 0.00 0.00 0.00 3.20
383 384 2.290514 TGATGCAAAACAGAGGGAGAGG 60.291 50.000 0.00 0.00 0.00 3.69
384 385 1.434188 TGCAAAACAGAGGGAGAGGA 58.566 50.000 0.00 0.00 0.00 3.71
385 386 1.349026 TGCAAAACAGAGGGAGAGGAG 59.651 52.381 0.00 0.00 0.00 3.69
386 387 1.948144 GCAAAACAGAGGGAGAGGAGC 60.948 57.143 0.00 0.00 0.00 4.70
387 388 0.610687 AAAACAGAGGGAGAGGAGCG 59.389 55.000 0.00 0.00 0.00 5.03
388 389 0.543174 AAACAGAGGGAGAGGAGCGT 60.543 55.000 0.00 0.00 0.00 5.07
389 390 1.254284 AACAGAGGGAGAGGAGCGTG 61.254 60.000 0.00 0.00 0.00 5.34
390 391 2.043450 AGAGGGAGAGGAGCGTGG 60.043 66.667 0.00 0.00 0.00 4.94
391 392 2.043852 GAGGGAGAGGAGCGTGGA 60.044 66.667 0.00 0.00 0.00 4.02
392 393 1.456705 GAGGGAGAGGAGCGTGGAT 60.457 63.158 0.00 0.00 0.00 3.41
393 394 1.743321 GAGGGAGAGGAGCGTGGATG 61.743 65.000 0.00 0.00 0.00 3.51
394 395 2.801631 GGGAGAGGAGCGTGGATGG 61.802 68.421 0.00 0.00 0.00 3.51
395 396 2.801631 GGAGAGGAGCGTGGATGGG 61.802 68.421 0.00 0.00 0.00 4.00
396 397 2.765807 AGAGGAGCGTGGATGGGG 60.766 66.667 0.00 0.00 0.00 4.96
397 398 3.866582 GAGGAGCGTGGATGGGGG 61.867 72.222 0.00 0.00 0.00 5.40
398 399 4.741239 AGGAGCGTGGATGGGGGT 62.741 66.667 0.00 0.00 0.00 4.95
399 400 4.489771 GGAGCGTGGATGGGGGTG 62.490 72.222 0.00 0.00 0.00 4.61
688 690 1.069935 GTTCCTCCCATCGCTAGGC 59.930 63.158 0.00 0.00 0.00 3.93
697 699 3.765257 ATCGCTAGGCCCTCCAGCT 62.765 63.158 0.00 0.00 35.63 4.24
743 745 2.196925 CCCGATGCCTCTAGTCGCT 61.197 63.158 5.60 0.00 34.25 4.93
798 800 1.927527 AGGGCTGCCTGATCCAGTT 60.928 57.895 19.68 0.00 32.93 3.16
814 816 4.161295 TTGCCAGAGCCCGATCCG 62.161 66.667 0.00 0.00 38.69 4.18
831 833 2.266055 GGTCGCCAGAGTCCAAGG 59.734 66.667 0.00 0.00 0.00 3.61
835 837 4.704833 GCCAGAGTCCAAGGCGCA 62.705 66.667 10.83 0.00 38.86 6.09
932 934 0.742990 CCGATTTTCCTGCAGCCGTA 60.743 55.000 8.66 0.00 0.00 4.02
943 945 4.087892 AGCCGTACCCTGCTGCTG 62.088 66.667 0.00 0.00 36.23 4.41
1042 1044 3.062466 CTGTCCCTCGCTGTCCGA 61.062 66.667 0.00 0.00 45.15 4.55
1067 1069 9.477484 GATGATTTTCGATGGTACTAACTACAT 57.523 33.333 0.00 0.00 0.00 2.29
1276 1278 5.520376 TGATCGTGCTTATGATGAGAAGA 57.480 39.130 0.00 0.00 0.00 2.87
1447 1449 1.348064 TGAGATGTGGACCCGTCTTT 58.652 50.000 6.26 0.00 30.87 2.52
1487 1489 5.440610 CTCTGGTGATGCCTTATACCTTTT 58.559 41.667 0.00 0.00 38.35 2.27
1526 1528 0.036022 GCTCTTCAGCAGGGTGACTT 59.964 55.000 0.00 0.00 46.06 3.01
1674 1676 1.270907 ATGAGTTCCTGTCTCGGCTT 58.729 50.000 0.00 0.00 34.99 4.35
1697 1699 4.344865 GGAGTTTGAGCCCCGGCA 62.345 66.667 8.74 0.00 44.88 5.69
1720 1722 1.406539 CTCAGTTGTTTGCTTGTGGCT 59.593 47.619 0.00 0.00 42.39 4.75
1818 1820 1.063327 CTCTGTGCTCGCTACTCGG 59.937 63.158 0.00 0.00 39.05 4.63
1863 1865 2.568612 CCTTCTCGCTCGAGTGCA 59.431 61.111 21.17 7.22 42.49 4.57
2016 2019 1.825474 TCTTCAGGGACTTCGTCATCC 59.175 52.381 0.00 0.00 34.60 3.51
2071 2074 9.349713 CTGAGTAGGATATTCTGAGACTTAAGT 57.650 37.037 8.13 8.13 29.71 2.24
2096 2099 0.954452 CTTGCGGCTTCAGGTTCTTT 59.046 50.000 0.00 0.00 0.00 2.52
2099 2102 1.239347 GCGGCTTCAGGTTCTTTCTT 58.761 50.000 0.00 0.00 0.00 2.52
2218 2221 9.539825 GAGCTTCTTTTCATATGTCTTCTCATA 57.460 33.333 1.90 0.00 35.24 2.15
2219 2222 9.323985 AGCTTCTTTTCATATGTCTTCTCATAC 57.676 33.333 1.90 0.00 33.87 2.39
2220 2223 9.323985 GCTTCTTTTCATATGTCTTCTCATACT 57.676 33.333 1.90 0.00 33.87 2.12
2279 2282 2.234661 CCTGTTCATGTCCTCACTGCTA 59.765 50.000 0.00 0.00 0.00 3.49
2337 2343 5.642165 TCTTACCACTCCTTACTCTGTTCT 58.358 41.667 0.00 0.00 0.00 3.01
2387 2393 5.954150 ACCATGAATCTATTTTCTGCTGGTT 59.046 36.000 0.00 0.00 33.65 3.67
2574 2580 2.262915 CTCCGCTTCAGTCGCCTT 59.737 61.111 0.00 0.00 0.00 4.35
2626 2632 1.160137 GACTTGGTCATCTGTGTGGC 58.840 55.000 0.00 0.00 32.09 5.01
2705 2711 4.654262 TCTCTTTAGAGTGTCAGGGTTGTT 59.346 41.667 6.65 0.00 42.60 2.83
2798 2804 1.874129 TTCTGATGTATGGGGTCCGT 58.126 50.000 0.00 0.00 0.00 4.69
2833 2839 7.254353 GCTTCGAAAGGTGGTCATAAATACTAC 60.254 40.741 0.00 0.00 0.00 2.73
2951 2957 6.611613 TGGTTCATACTCAGTTCTCTTCAT 57.388 37.500 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.269958 AGGTGCAGCTGAGTACATCA 58.730 50.000 19.45 0.00 36.21 3.07
4 5 3.254892 GAAACTAGGTGCAGCTGAGTAC 58.745 50.000 28.10 17.64 0.00 2.73
5 6 2.233922 GGAAACTAGGTGCAGCTGAGTA 59.766 50.000 28.10 7.32 0.00 2.59
9 10 1.002430 TCTGGAAACTAGGTGCAGCTG 59.998 52.381 28.10 18.99 34.67 4.24
10 11 1.352083 TCTGGAAACTAGGTGCAGCT 58.648 50.000 23.72 23.72 34.67 4.24
11 12 2.409948 ATCTGGAAACTAGGTGCAGC 57.590 50.000 8.11 8.11 34.67 5.25
12 13 5.091261 ACTAATCTGGAAACTAGGTGCAG 57.909 43.478 9.96 9.96 35.90 4.41
13 14 5.499004 AACTAATCTGGAAACTAGGTGCA 57.501 39.130 0.00 0.00 0.00 4.57
14 15 7.501844 AGATAACTAATCTGGAAACTAGGTGC 58.498 38.462 0.00 0.00 43.62 5.01
15 16 8.919145 AGAGATAACTAATCTGGAAACTAGGTG 58.081 37.037 0.00 0.00 45.35 4.00
22 23 9.561069 GCCAATTAGAGATAACTAATCTGGAAA 57.439 33.333 20.16 0.00 45.35 3.13
23 24 8.713971 TGCCAATTAGAGATAACTAATCTGGAA 58.286 33.333 20.16 13.75 45.35 3.53
24 25 8.262601 TGCCAATTAGAGATAACTAATCTGGA 57.737 34.615 20.16 8.89 45.35 3.86
25 26 8.370940 TCTGCCAATTAGAGATAACTAATCTGG 58.629 37.037 4.59 4.59 45.35 3.86
26 27 9.941325 ATCTGCCAATTAGAGATAACTAATCTG 57.059 33.333 0.00 0.00 45.35 2.90
29 30 9.512588 CCAATCTGCCAATTAGAGATAACTAAT 57.487 33.333 0.00 0.00 42.54 1.73
30 31 8.494433 ACCAATCTGCCAATTAGAGATAACTAA 58.506 33.333 0.00 0.00 36.89 2.24
31 32 8.034313 ACCAATCTGCCAATTAGAGATAACTA 57.966 34.615 0.00 0.00 0.00 2.24
32 33 6.904626 ACCAATCTGCCAATTAGAGATAACT 58.095 36.000 0.00 0.00 0.00 2.24
33 34 7.067494 ACAACCAATCTGCCAATTAGAGATAAC 59.933 37.037 0.00 0.00 0.00 1.89
34 35 7.118723 ACAACCAATCTGCCAATTAGAGATAA 58.881 34.615 0.00 0.00 0.00 1.75
35 36 6.662755 ACAACCAATCTGCCAATTAGAGATA 58.337 36.000 0.00 0.00 0.00 1.98
36 37 5.513233 ACAACCAATCTGCCAATTAGAGAT 58.487 37.500 0.00 0.00 0.00 2.75
37 38 4.922206 ACAACCAATCTGCCAATTAGAGA 58.078 39.130 0.00 0.00 0.00 3.10
38 39 5.882557 AGTACAACCAATCTGCCAATTAGAG 59.117 40.000 0.00 0.00 0.00 2.43
39 40 5.815581 AGTACAACCAATCTGCCAATTAGA 58.184 37.500 0.00 0.00 0.00 2.10
40 41 7.624360 TTAGTACAACCAATCTGCCAATTAG 57.376 36.000 0.00 0.00 0.00 1.73
41 42 9.860650 ATATTAGTACAACCAATCTGCCAATTA 57.139 29.630 0.00 0.00 0.00 1.40
42 43 8.766994 ATATTAGTACAACCAATCTGCCAATT 57.233 30.769 0.00 0.00 0.00 2.32
43 44 7.448469 GGATATTAGTACAACCAATCTGCCAAT 59.552 37.037 0.00 0.00 0.00 3.16
44 45 6.770785 GGATATTAGTACAACCAATCTGCCAA 59.229 38.462 0.00 0.00 0.00 4.52
45 46 6.126623 TGGATATTAGTACAACCAATCTGCCA 60.127 38.462 0.00 0.00 0.00 4.92
46 47 6.296026 TGGATATTAGTACAACCAATCTGCC 58.704 40.000 0.00 0.00 0.00 4.85
47 48 7.801716 TTGGATATTAGTACAACCAATCTGC 57.198 36.000 0.00 0.00 33.40 4.26
96 97 9.187455 GGAAATTACGTGTACAACAAAATTCAT 57.813 29.630 0.00 0.00 0.00 2.57
97 98 8.188799 TGGAAATTACGTGTACAACAAAATTCA 58.811 29.630 0.00 0.00 0.00 2.57
98 99 8.563289 TGGAAATTACGTGTACAACAAAATTC 57.437 30.769 0.00 1.32 0.00 2.17
99 100 8.407064 TCTGGAAATTACGTGTACAACAAAATT 58.593 29.630 0.00 0.00 0.00 1.82
100 101 7.932335 TCTGGAAATTACGTGTACAACAAAAT 58.068 30.769 0.00 0.00 0.00 1.82
101 102 7.317842 TCTGGAAATTACGTGTACAACAAAA 57.682 32.000 0.00 0.00 0.00 2.44
102 103 6.922247 TCTGGAAATTACGTGTACAACAAA 57.078 33.333 0.00 0.00 0.00 2.83
103 104 7.499321 AATCTGGAAATTACGTGTACAACAA 57.501 32.000 0.00 0.00 0.00 2.83
104 105 7.874016 ACTAATCTGGAAATTACGTGTACAACA 59.126 33.333 0.00 0.00 0.00 3.33
105 106 8.248117 ACTAATCTGGAAATTACGTGTACAAC 57.752 34.615 0.00 0.00 0.00 3.32
106 107 8.714179 CAACTAATCTGGAAATTACGTGTACAA 58.286 33.333 0.00 0.00 0.00 2.41
107 108 7.874016 ACAACTAATCTGGAAATTACGTGTACA 59.126 33.333 0.00 0.00 0.00 2.90
108 109 8.248117 ACAACTAATCTGGAAATTACGTGTAC 57.752 34.615 0.00 0.00 0.00 2.90
109 110 8.308931 AGACAACTAATCTGGAAATTACGTGTA 58.691 33.333 0.00 0.00 0.00 2.90
110 111 7.159372 AGACAACTAATCTGGAAATTACGTGT 58.841 34.615 0.00 0.00 0.00 4.49
111 112 7.545965 AGAGACAACTAATCTGGAAATTACGTG 59.454 37.037 0.00 0.00 0.00 4.49
112 113 7.612677 AGAGACAACTAATCTGGAAATTACGT 58.387 34.615 0.00 0.00 0.00 3.57
113 114 9.021863 GTAGAGACAACTAATCTGGAAATTACG 57.978 37.037 0.00 0.00 0.00 3.18
117 118 9.660180 GAAAGTAGAGACAACTAATCTGGAAAT 57.340 33.333 0.00 0.00 0.00 2.17
118 119 8.095169 GGAAAGTAGAGACAACTAATCTGGAAA 58.905 37.037 0.00 0.00 0.00 3.13
119 120 7.234782 TGGAAAGTAGAGACAACTAATCTGGAA 59.765 37.037 0.00 0.00 0.00 3.53
120 121 6.724441 TGGAAAGTAGAGACAACTAATCTGGA 59.276 38.462 0.00 0.00 0.00 3.86
121 122 6.936279 TGGAAAGTAGAGACAACTAATCTGG 58.064 40.000 0.00 0.00 0.00 3.86
122 123 7.831753 TCTGGAAAGTAGAGACAACTAATCTG 58.168 38.462 0.00 0.00 0.00 2.90
123 124 8.602472 ATCTGGAAAGTAGAGACAACTAATCT 57.398 34.615 0.00 0.00 0.00 2.40
124 125 9.660180 AAATCTGGAAAGTAGAGACAACTAATC 57.340 33.333 0.00 0.00 0.00 1.75
125 126 9.442047 CAAATCTGGAAAGTAGAGACAACTAAT 57.558 33.333 0.00 0.00 0.00 1.73
126 127 7.878127 CCAAATCTGGAAAGTAGAGACAACTAA 59.122 37.037 0.00 0.00 46.92 2.24
127 128 7.016268 ACCAAATCTGGAAAGTAGAGACAACTA 59.984 37.037 0.00 0.00 46.92 2.24
128 129 6.183361 ACCAAATCTGGAAAGTAGAGACAACT 60.183 38.462 0.00 0.00 46.92 3.16
129 130 5.998363 ACCAAATCTGGAAAGTAGAGACAAC 59.002 40.000 0.00 0.00 46.92 3.32
130 131 5.997746 CACCAAATCTGGAAAGTAGAGACAA 59.002 40.000 0.00 0.00 46.92 3.18
131 132 5.071788 ACACCAAATCTGGAAAGTAGAGACA 59.928 40.000 0.00 0.00 46.92 3.41
132 133 5.552178 ACACCAAATCTGGAAAGTAGAGAC 58.448 41.667 0.00 0.00 46.92 3.36
133 134 5.825593 ACACCAAATCTGGAAAGTAGAGA 57.174 39.130 0.00 0.00 46.92 3.10
134 135 7.331026 TGATACACCAAATCTGGAAAGTAGAG 58.669 38.462 0.00 0.00 46.92 2.43
135 136 7.038302 ACTGATACACCAAATCTGGAAAGTAGA 60.038 37.037 0.00 0.00 46.92 2.59
136 137 7.106239 ACTGATACACCAAATCTGGAAAGTAG 58.894 38.462 0.00 0.00 46.92 2.57
137 138 7.016153 ACTGATACACCAAATCTGGAAAGTA 57.984 36.000 0.00 0.00 46.92 2.24
138 139 5.880901 ACTGATACACCAAATCTGGAAAGT 58.119 37.500 0.00 0.00 46.92 2.66
139 140 6.615088 CAACTGATACACCAAATCTGGAAAG 58.385 40.000 0.00 0.00 46.92 2.62
140 141 5.048083 GCAACTGATACACCAAATCTGGAAA 60.048 40.000 0.00 0.00 46.92 3.13
141 142 4.458989 GCAACTGATACACCAAATCTGGAA 59.541 41.667 0.00 0.00 46.92 3.53
142 143 4.009675 GCAACTGATACACCAAATCTGGA 58.990 43.478 0.00 0.00 46.92 3.86
143 144 5.347994 TGGCAACTGATACACCAAATCTGG 61.348 45.833 0.00 0.00 43.53 3.86
144 145 3.758023 TGGCAACTGATACACCAAATCTG 59.242 43.478 0.00 0.00 37.61 2.90
145 146 4.032960 TGGCAACTGATACACCAAATCT 57.967 40.909 0.00 0.00 37.61 2.40
146 147 4.989279 ATGGCAACTGATACACCAAATC 57.011 40.909 0.00 0.00 33.30 2.17
147 148 5.509498 AGTATGGCAACTGATACACCAAAT 58.491 37.500 0.00 0.00 33.30 2.32
148 149 4.917385 AGTATGGCAACTGATACACCAAA 58.083 39.130 0.00 0.00 33.30 3.28
149 150 4.568072 AGTATGGCAACTGATACACCAA 57.432 40.909 0.00 0.00 33.30 3.67
172 173 1.212751 GAATGGCAAGGTCGGCAAC 59.787 57.895 0.00 0.00 45.48 4.17
173 174 0.960364 GAGAATGGCAAGGTCGGCAA 60.960 55.000 0.00 0.00 45.48 4.52
174 175 1.377202 GAGAATGGCAAGGTCGGCA 60.377 57.895 0.00 0.00 46.50 5.69
175 176 2.464459 CGAGAATGGCAAGGTCGGC 61.464 63.158 0.00 0.00 0.00 5.54
176 177 1.079127 ACGAGAATGGCAAGGTCGG 60.079 57.895 16.73 5.25 34.94 4.79
177 178 1.970917 GCACGAGAATGGCAAGGTCG 61.971 60.000 12.46 12.46 36.71 4.79
178 179 1.648467 GGCACGAGAATGGCAAGGTC 61.648 60.000 0.00 0.00 44.34 3.85
179 180 1.675641 GGCACGAGAATGGCAAGGT 60.676 57.895 0.00 0.00 44.34 3.50
180 181 3.190878 GGCACGAGAATGGCAAGG 58.809 61.111 0.00 0.00 44.34 3.61
184 185 3.044059 GCACAGGCACGAGAATGGC 62.044 63.158 0.00 0.00 45.26 4.40
185 186 2.401766 GGCACAGGCACGAGAATGG 61.402 63.158 0.00 0.00 43.71 3.16
186 187 2.401766 GGGCACAGGCACGAGAATG 61.402 63.158 0.00 0.00 43.71 2.67
187 188 2.045926 GGGCACAGGCACGAGAAT 60.046 61.111 0.00 0.00 43.71 2.40
205 206 1.477014 GCTAGGGATTTTCGAAGGGGG 60.477 57.143 0.00 0.00 0.00 5.40
206 207 1.211949 TGCTAGGGATTTTCGAAGGGG 59.788 52.381 0.00 0.00 0.00 4.79
207 208 2.092914 AGTGCTAGGGATTTTCGAAGGG 60.093 50.000 0.00 0.00 0.00 3.95
208 209 3.198872 GAGTGCTAGGGATTTTCGAAGG 58.801 50.000 0.00 0.00 0.00 3.46
209 210 2.860735 CGAGTGCTAGGGATTTTCGAAG 59.139 50.000 0.00 0.00 0.00 3.79
210 211 2.232941 ACGAGTGCTAGGGATTTTCGAA 59.767 45.455 0.00 0.00 0.00 3.71
211 212 1.822990 ACGAGTGCTAGGGATTTTCGA 59.177 47.619 0.00 0.00 0.00 3.71
212 213 2.295253 ACGAGTGCTAGGGATTTTCG 57.705 50.000 0.00 0.00 0.00 3.46
213 214 5.839621 TGTATACGAGTGCTAGGGATTTTC 58.160 41.667 0.00 0.00 0.00 2.29
214 215 5.864418 TGTATACGAGTGCTAGGGATTTT 57.136 39.130 0.00 0.00 0.00 1.82
215 216 5.304614 ACATGTATACGAGTGCTAGGGATTT 59.695 40.000 0.00 0.00 0.00 2.17
216 217 4.833380 ACATGTATACGAGTGCTAGGGATT 59.167 41.667 0.00 0.00 0.00 3.01
217 218 4.218635 CACATGTATACGAGTGCTAGGGAT 59.781 45.833 12.67 0.00 0.00 3.85
218 219 3.568430 CACATGTATACGAGTGCTAGGGA 59.432 47.826 12.67 0.00 0.00 4.20
219 220 3.568430 TCACATGTATACGAGTGCTAGGG 59.432 47.826 17.84 0.39 32.25 3.53
220 221 4.276183 AGTCACATGTATACGAGTGCTAGG 59.724 45.833 17.84 0.00 32.25 3.02
221 222 5.007724 TCAGTCACATGTATACGAGTGCTAG 59.992 44.000 17.84 11.66 32.25 3.42
222 223 4.879545 TCAGTCACATGTATACGAGTGCTA 59.120 41.667 17.84 4.47 32.25 3.49
223 224 3.694566 TCAGTCACATGTATACGAGTGCT 59.305 43.478 17.84 15.41 32.25 4.40
224 225 3.791887 GTCAGTCACATGTATACGAGTGC 59.208 47.826 17.84 14.00 32.25 4.40
225 226 5.030936 CAGTCAGTCACATGTATACGAGTG 58.969 45.833 16.97 16.97 0.00 3.51
226 227 4.941873 TCAGTCAGTCACATGTATACGAGT 59.058 41.667 0.00 3.09 0.00 4.18
227 228 5.294552 TCTCAGTCAGTCACATGTATACGAG 59.705 44.000 0.00 2.59 0.00 4.18
228 229 5.183228 TCTCAGTCAGTCACATGTATACGA 58.817 41.667 0.00 0.12 0.00 3.43
229 230 5.294552 TCTCTCAGTCAGTCACATGTATACG 59.705 44.000 0.00 0.00 0.00 3.06
230 231 6.685527 TCTCTCAGTCAGTCACATGTATAC 57.314 41.667 0.00 0.00 0.00 1.47
231 232 6.488344 GGATCTCTCAGTCAGTCACATGTATA 59.512 42.308 0.00 0.00 0.00 1.47
232 233 5.301551 GGATCTCTCAGTCAGTCACATGTAT 59.698 44.000 0.00 0.00 0.00 2.29
233 234 4.642437 GGATCTCTCAGTCAGTCACATGTA 59.358 45.833 0.00 0.00 0.00 2.29
234 235 3.446873 GGATCTCTCAGTCAGTCACATGT 59.553 47.826 0.00 0.00 0.00 3.21
235 236 3.181477 GGGATCTCTCAGTCAGTCACATG 60.181 52.174 0.00 0.00 0.00 3.21
236 237 3.030291 GGGATCTCTCAGTCAGTCACAT 58.970 50.000 0.00 0.00 0.00 3.21
237 238 2.451490 GGGATCTCTCAGTCAGTCACA 58.549 52.381 0.00 0.00 0.00 3.58
238 239 1.403679 CGGGATCTCTCAGTCAGTCAC 59.596 57.143 0.00 0.00 0.00 3.67
239 240 1.004862 ACGGGATCTCTCAGTCAGTCA 59.995 52.381 0.00 0.00 0.00 3.41
240 241 1.403679 CACGGGATCTCTCAGTCAGTC 59.596 57.143 0.00 0.00 0.00 3.51
241 242 1.468985 CACGGGATCTCTCAGTCAGT 58.531 55.000 0.00 0.00 0.00 3.41
242 243 0.743688 CCACGGGATCTCTCAGTCAG 59.256 60.000 0.00 0.00 0.00 3.51
243 244 1.323271 GCCACGGGATCTCTCAGTCA 61.323 60.000 0.00 0.00 0.00 3.41
244 245 1.323271 TGCCACGGGATCTCTCAGTC 61.323 60.000 0.00 0.00 0.00 3.51
245 246 1.305297 TGCCACGGGATCTCTCAGT 60.305 57.895 0.00 0.00 0.00 3.41
246 247 1.142748 GTGCCACGGGATCTCTCAG 59.857 63.158 0.00 0.00 0.00 3.35
247 248 2.359169 GGTGCCACGGGATCTCTCA 61.359 63.158 0.00 0.00 0.00 3.27
248 249 2.022240 GAGGTGCCACGGGATCTCTC 62.022 65.000 10.40 1.11 40.02 3.20
249 250 2.039624 AGGTGCCACGGGATCTCT 59.960 61.111 0.00 0.00 0.00 3.10
250 251 2.501610 GAGGTGCCACGGGATCTC 59.498 66.667 1.76 1.76 36.60 2.75
251 252 2.238319 TAGGAGGTGCCACGGGATCT 62.238 60.000 0.00 0.00 40.02 2.75
252 253 1.749334 CTAGGAGGTGCCACGGGATC 61.749 65.000 0.00 0.00 40.02 3.36
253 254 1.762460 CTAGGAGGTGCCACGGGAT 60.762 63.158 0.00 0.00 40.02 3.85
254 255 2.363795 CTAGGAGGTGCCACGGGA 60.364 66.667 0.00 0.00 40.02 5.14
255 256 2.363795 TCTAGGAGGTGCCACGGG 60.364 66.667 0.00 0.00 40.02 5.28
256 257 1.668101 GACTCTAGGAGGTGCCACGG 61.668 65.000 0.00 0.00 40.02 4.94
257 258 1.668101 GGACTCTAGGAGGTGCCACG 61.668 65.000 0.00 0.00 40.02 4.94
258 259 0.324830 AGGACTCTAGGAGGTGCCAC 60.325 60.000 0.00 0.00 40.02 5.01
259 260 1.215673 CTAGGACTCTAGGAGGTGCCA 59.784 57.143 0.00 0.00 39.36 4.92
260 261 1.989706 CTAGGACTCTAGGAGGTGCC 58.010 60.000 0.00 0.00 39.36 5.01
268 269 2.158234 AGAATGGGGCCTAGGACTCTAG 60.158 54.545 17.79 0.00 41.95 2.43
269 270 1.866943 AGAATGGGGCCTAGGACTCTA 59.133 52.381 17.79 3.59 0.00 2.43
270 271 0.644937 AGAATGGGGCCTAGGACTCT 59.355 55.000 17.79 7.23 0.00 3.24
271 272 2.400467 TAGAATGGGGCCTAGGACTC 57.600 55.000 16.16 12.35 0.00 3.36
272 273 2.495572 GGATAGAATGGGGCCTAGGACT 60.496 54.545 16.16 0.00 0.00 3.85
273 274 1.909986 GGATAGAATGGGGCCTAGGAC 59.090 57.143 14.75 10.52 0.00 3.85
274 275 1.203440 GGGATAGAATGGGGCCTAGGA 60.203 57.143 14.75 0.00 0.00 2.94
275 276 1.290134 GGGATAGAATGGGGCCTAGG 58.710 60.000 3.67 3.67 0.00 3.02
276 277 1.203492 AGGGGATAGAATGGGGCCTAG 60.203 57.143 0.84 0.00 0.00 3.02
277 278 0.881807 AGGGGATAGAATGGGGCCTA 59.118 55.000 0.84 0.00 0.00 3.93
278 279 0.476611 GAGGGGATAGAATGGGGCCT 60.477 60.000 0.84 0.00 0.00 5.19
279 280 1.842381 CGAGGGGATAGAATGGGGCC 61.842 65.000 0.00 0.00 0.00 5.80
280 281 1.128188 ACGAGGGGATAGAATGGGGC 61.128 60.000 0.00 0.00 0.00 5.80
281 282 0.977395 GACGAGGGGATAGAATGGGG 59.023 60.000 0.00 0.00 0.00 4.96
282 283 0.603569 CGACGAGGGGATAGAATGGG 59.396 60.000 0.00 0.00 0.00 4.00
283 284 1.269998 GACGACGAGGGGATAGAATGG 59.730 57.143 0.00 0.00 0.00 3.16
284 285 2.231529 AGACGACGAGGGGATAGAATG 58.768 52.381 0.00 0.00 0.00 2.67
285 286 2.660670 AGACGACGAGGGGATAGAAT 57.339 50.000 0.00 0.00 0.00 2.40
286 287 2.809665 GCTAGACGACGAGGGGATAGAA 60.810 54.545 0.00 0.00 0.00 2.10
287 288 1.270732 GCTAGACGACGAGGGGATAGA 60.271 57.143 0.00 0.00 0.00 1.98
288 289 1.158434 GCTAGACGACGAGGGGATAG 58.842 60.000 0.00 0.00 0.00 2.08
289 290 0.763652 AGCTAGACGACGAGGGGATA 59.236 55.000 0.00 0.00 0.00 2.59
290 291 0.535553 GAGCTAGACGACGAGGGGAT 60.536 60.000 0.00 0.00 0.00 3.85
291 292 1.153208 GAGCTAGACGACGAGGGGA 60.153 63.158 0.00 0.00 0.00 4.81
292 293 2.535788 CGAGCTAGACGACGAGGGG 61.536 68.421 0.00 0.00 0.00 4.79
293 294 3.015677 CGAGCTAGACGACGAGGG 58.984 66.667 0.00 0.00 0.00 4.30
294 295 2.325166 GCGAGCTAGACGACGAGG 59.675 66.667 0.00 0.00 0.00 4.63
295 296 2.053811 CGCGAGCTAGACGACGAG 60.054 66.667 0.00 0.00 34.42 4.18
296 297 3.561213 CCGCGAGCTAGACGACGA 61.561 66.667 8.23 0.00 34.42 4.20
300 301 3.808771 AATCGCCGCGAGCTAGACG 62.809 63.158 21.61 0.77 39.91 4.18
301 302 0.317603 TAAATCGCCGCGAGCTAGAC 60.318 55.000 21.61 0.00 39.91 2.59
302 303 0.040336 CTAAATCGCCGCGAGCTAGA 60.040 55.000 21.61 3.59 39.91 2.43
303 304 0.040336 TCTAAATCGCCGCGAGCTAG 60.040 55.000 21.61 20.81 39.91 3.42
304 305 0.596577 ATCTAAATCGCCGCGAGCTA 59.403 50.000 21.61 13.03 39.91 3.32
305 306 0.664767 GATCTAAATCGCCGCGAGCT 60.665 55.000 21.61 12.58 39.91 4.09
306 307 0.939577 TGATCTAAATCGCCGCGAGC 60.940 55.000 21.61 8.84 39.91 5.03
307 308 0.778815 GTGATCTAAATCGCCGCGAG 59.221 55.000 21.61 7.51 39.91 5.03
308 309 2.881441 GTGATCTAAATCGCCGCGA 58.119 52.632 19.34 19.34 41.13 5.87
313 314 3.126001 TCATGGGGTGATCTAAATCGC 57.874 47.619 0.00 0.00 40.92 4.58
314 315 4.708177 ACTTCATGGGGTGATCTAAATCG 58.292 43.478 0.00 0.00 36.54 3.34
315 316 5.762218 CAGACTTCATGGGGTGATCTAAATC 59.238 44.000 0.00 0.00 36.54 2.17
316 317 5.429762 TCAGACTTCATGGGGTGATCTAAAT 59.570 40.000 0.00 0.00 36.54 1.40
317 318 4.782691 TCAGACTTCATGGGGTGATCTAAA 59.217 41.667 0.00 0.00 36.54 1.85
318 319 4.361783 TCAGACTTCATGGGGTGATCTAA 58.638 43.478 0.00 0.00 36.54 2.10
319 320 3.994317 TCAGACTTCATGGGGTGATCTA 58.006 45.455 0.00 0.00 36.54 1.98
320 321 2.837947 TCAGACTTCATGGGGTGATCT 58.162 47.619 0.00 0.00 36.54 2.75
321 322 3.634397 TTCAGACTTCATGGGGTGATC 57.366 47.619 0.00 0.00 36.54 2.92
322 323 4.387026 TTTTCAGACTTCATGGGGTGAT 57.613 40.909 0.00 0.00 36.54 3.06
323 324 3.874383 TTTTCAGACTTCATGGGGTGA 57.126 42.857 0.00 0.00 34.25 4.02
354 355 5.528320 CCCTCTGTTTTGCATCATTGTTTTT 59.472 36.000 0.00 0.00 0.00 1.94
355 356 5.058490 CCCTCTGTTTTGCATCATTGTTTT 58.942 37.500 0.00 0.00 0.00 2.43
356 357 4.344679 TCCCTCTGTTTTGCATCATTGTTT 59.655 37.500 0.00 0.00 0.00 2.83
357 358 3.896888 TCCCTCTGTTTTGCATCATTGTT 59.103 39.130 0.00 0.00 0.00 2.83
358 359 3.499338 TCCCTCTGTTTTGCATCATTGT 58.501 40.909 0.00 0.00 0.00 2.71
359 360 3.760151 TCTCCCTCTGTTTTGCATCATTG 59.240 43.478 0.00 0.00 0.00 2.82
360 361 4.015084 CTCTCCCTCTGTTTTGCATCATT 58.985 43.478 0.00 0.00 0.00 2.57
361 362 3.618351 CTCTCCCTCTGTTTTGCATCAT 58.382 45.455 0.00 0.00 0.00 2.45
362 363 2.290514 CCTCTCCCTCTGTTTTGCATCA 60.291 50.000 0.00 0.00 0.00 3.07
363 364 2.026822 TCCTCTCCCTCTGTTTTGCATC 60.027 50.000 0.00 0.00 0.00 3.91
364 365 1.988107 TCCTCTCCCTCTGTTTTGCAT 59.012 47.619 0.00 0.00 0.00 3.96
365 366 1.349026 CTCCTCTCCCTCTGTTTTGCA 59.651 52.381 0.00 0.00 0.00 4.08
366 367 1.948144 GCTCCTCTCCCTCTGTTTTGC 60.948 57.143 0.00 0.00 0.00 3.68
367 368 1.674221 CGCTCCTCTCCCTCTGTTTTG 60.674 57.143 0.00 0.00 0.00 2.44
368 369 0.610687 CGCTCCTCTCCCTCTGTTTT 59.389 55.000 0.00 0.00 0.00 2.43
369 370 0.543174 ACGCTCCTCTCCCTCTGTTT 60.543 55.000 0.00 0.00 0.00 2.83
370 371 1.077625 ACGCTCCTCTCCCTCTGTT 59.922 57.895 0.00 0.00 0.00 3.16
371 372 1.680651 CACGCTCCTCTCCCTCTGT 60.681 63.158 0.00 0.00 0.00 3.41
372 373 2.422231 CCACGCTCCTCTCCCTCTG 61.422 68.421 0.00 0.00 0.00 3.35
373 374 1.943730 ATCCACGCTCCTCTCCCTCT 61.944 60.000 0.00 0.00 0.00 3.69
374 375 1.456705 ATCCACGCTCCTCTCCCTC 60.457 63.158 0.00 0.00 0.00 4.30
375 376 1.760086 CATCCACGCTCCTCTCCCT 60.760 63.158 0.00 0.00 0.00 4.20
376 377 2.801631 CCATCCACGCTCCTCTCCC 61.802 68.421 0.00 0.00 0.00 4.30
377 378 2.801631 CCCATCCACGCTCCTCTCC 61.802 68.421 0.00 0.00 0.00 3.71
378 379 2.801631 CCCCATCCACGCTCCTCTC 61.802 68.421 0.00 0.00 0.00 3.20
379 380 2.765807 CCCCATCCACGCTCCTCT 60.766 66.667 0.00 0.00 0.00 3.69
380 381 3.866582 CCCCCATCCACGCTCCTC 61.867 72.222 0.00 0.00 0.00 3.71
381 382 4.741239 ACCCCCATCCACGCTCCT 62.741 66.667 0.00 0.00 0.00 3.69
382 383 4.489771 CACCCCCATCCACGCTCC 62.490 72.222 0.00 0.00 0.00 4.70
390 391 2.650813 CTAGTGAGCGCACCCCCATC 62.651 65.000 17.50 0.00 46.32 3.51
391 392 2.687200 TAGTGAGCGCACCCCCAT 60.687 61.111 17.50 0.44 46.32 4.00
392 393 3.390521 CTAGTGAGCGCACCCCCA 61.391 66.667 17.50 0.00 46.32 4.96
393 394 3.391382 ACTAGTGAGCGCACCCCC 61.391 66.667 17.50 0.00 46.32 5.40
394 395 2.125512 CACTAGTGAGCGCACCCC 60.126 66.667 18.45 0.00 46.32 4.95
395 396 0.245539 TAACACTAGTGAGCGCACCC 59.754 55.000 29.30 0.00 46.32 4.61
396 397 1.201647 TCTAACACTAGTGAGCGCACC 59.798 52.381 29.30 0.50 46.32 5.01
397 398 2.095161 ACTCTAACACTAGTGAGCGCAC 60.095 50.000 29.30 13.22 45.49 5.34
398 399 2.160205 ACTCTAACACTAGTGAGCGCA 58.840 47.619 29.30 7.83 0.00 6.09
399 400 2.923605 ACTCTAACACTAGTGAGCGC 57.076 50.000 29.30 0.00 0.00 5.92
525 526 7.015195 ACCATGTTAGGAAAGCAACTTGTATTT 59.985 33.333 0.00 0.00 31.39 1.40
664 666 3.407967 GATGGGAGGAACCGGGCA 61.408 66.667 6.32 0.00 40.11 5.36
731 733 3.766432 CCCCTAGCGACTAGAGGC 58.234 66.667 13.37 0.00 36.26 4.70
814 816 2.266055 CCTTGGACTCTGGCGACC 59.734 66.667 0.00 0.00 0.00 4.79
831 833 1.086634 CAGAGAAAGGCTAGGTGCGC 61.087 60.000 0.00 0.00 44.05 6.09
835 837 2.293184 TGGATCCAGAGAAAGGCTAGGT 60.293 50.000 11.44 0.00 0.00 3.08
1042 1044 9.477484 GATGTAGTTAGTACCATCGAAAATCAT 57.523 33.333 0.00 0.00 0.00 2.45
1067 1069 2.346803 GCATAAAGCCAGTGAACTCGA 58.653 47.619 0.00 0.00 37.23 4.04
1276 1278 3.203934 AGAGCCTCCTCATAAGCCAAAAT 59.796 43.478 0.00 0.00 40.68 1.82
1487 1489 1.480212 ATGCTCCTGACGGACCACAA 61.480 55.000 0.00 0.00 34.92 3.33
1526 1528 6.463360 TGTGCATAGAAGTCATCAACAGTAA 58.537 36.000 0.00 0.00 0.00 2.24
1674 1676 0.611714 GGGGCTCAAACTCCTTACGA 59.388 55.000 0.00 0.00 0.00 3.43
1697 1699 2.223876 CCACAAGCAAACAACTGAGCAT 60.224 45.455 0.00 0.00 0.00 3.79
1720 1722 2.483714 GCGCCTCCATGAGAGAAATACA 60.484 50.000 11.48 0.00 46.50 2.29
1834 1836 2.526873 AGAAGGGGTCGGTGCAGT 60.527 61.111 0.00 0.00 0.00 4.40
2016 2019 1.739562 GGCTGAAGCTGTCGAGGTG 60.740 63.158 1.74 0.00 41.70 4.00
2050 2053 9.126151 CAGACACTTAAGTCTCAGAATATCCTA 57.874 37.037 12.65 0.00 45.35 2.94
2096 2099 0.830444 ACCAGCAGTACCCGTCAAGA 60.830 55.000 0.00 0.00 0.00 3.02
2099 2102 0.830444 AGAACCAGCAGTACCCGTCA 60.830 55.000 0.00 0.00 0.00 4.35
2218 2221 4.352298 AGAGAGGACAAAATGGAAGGAAGT 59.648 41.667 0.00 0.00 0.00 3.01
2219 2222 4.916183 AGAGAGGACAAAATGGAAGGAAG 58.084 43.478 0.00 0.00 0.00 3.46
2220 2223 5.316987 GAAGAGAGGACAAAATGGAAGGAA 58.683 41.667 0.00 0.00 0.00 3.36
2221 2224 4.563580 CGAAGAGAGGACAAAATGGAAGGA 60.564 45.833 0.00 0.00 0.00 3.36
2222 2225 3.686726 CGAAGAGAGGACAAAATGGAAGG 59.313 47.826 0.00 0.00 0.00 3.46
2337 2343 2.743664 CGAGGAACATGAGCAACATCAA 59.256 45.455 0.00 0.00 37.07 2.57
2387 2393 4.927425 GCGACAACCAGAATCAGTAAGTTA 59.073 41.667 0.00 0.00 0.00 2.24
2424 2430 2.630098 TCCTGGACAGAACAAGAGTCAG 59.370 50.000 0.00 0.00 34.04 3.51
2574 2580 3.882888 CTGCTTGAAGGAACCAGTAACAA 59.117 43.478 0.00 0.00 0.00 2.83
2626 2632 3.555917 ACTAAAGACGACAACCGAGAG 57.444 47.619 0.00 0.00 41.76 3.20
2705 2711 2.156917 CTGAATCTGCTTGCCAAGACA 58.843 47.619 9.04 5.08 0.00 3.41
2842 2848 9.899226 CATGTGTAACGAGAGAAATCATCTATA 57.101 33.333 0.00 0.00 42.39 1.31
2951 2957 1.944024 AGCACGAAAAACACGAATGGA 59.056 42.857 0.00 0.00 34.70 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.