Multiple sequence alignment - TraesCS6A01G138500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6A01G138500 chr6A 100.000 4655 0 0 1 4655 109492510 109497164 0.000000e+00 8597.0
1 TraesCS6A01G138500 chr6A 92.701 137 8 2 3921 4057 109496561 109496695 3.670000e-46 196.0
2 TraesCS6A01G138500 chr6B 94.302 3949 125 41 1 3921 174968816 174972692 0.000000e+00 5954.0
3 TraesCS6A01G138500 chr6B 100.000 56 0 0 4346 4401 174972691 174972746 2.290000e-18 104.0
4 TraesCS6A01G138500 chr6D 94.054 2321 79 20 1 2310 91077916 91080188 0.000000e+00 3467.0
5 TraesCS6A01G138500 chr6D 96.671 1562 32 10 2372 3921 91080190 91081743 0.000000e+00 2579.0
6 TraesCS6A01G138500 chr6D 98.214 56 1 0 4346 4401 91081742 91081797 1.070000e-16 99.0
7 TraesCS6A01G138500 chr2B 96.565 262 8 1 4394 4655 666484618 666484878 2.570000e-117 433.0
8 TraesCS6A01G138500 chr2A 96.512 258 9 0 4398 4655 777014412 777014669 1.200000e-115 427.0
9 TraesCS6A01G138500 chr2A 90.970 299 25 2 4049 4345 70660233 70660531 7.260000e-108 401.0
10 TraesCS6A01G138500 chr2A 90.940 298 25 2 4050 4345 728243577 728243280 2.610000e-107 399.0
11 TraesCS6A01G138500 chr2A 89.933 298 28 2 4049 4345 514438505 514438209 2.630000e-102 383.0
12 TraesCS6A01G138500 chr2A 92.000 150 12 0 3919 4068 676734120 676733971 1.310000e-50 211.0
13 TraesCS6A01G138500 chr2A 94.030 134 7 1 3921 4053 70660236 70660369 7.900000e-48 202.0
14 TraesCS6A01G138500 chr2A 91.971 137 11 0 3917 4053 728243579 728243443 4.750000e-45 193.0
15 TraesCS6A01G138500 chr1A 96.850 254 8 0 4402 4655 527245685 527245938 4.310000e-115 425.0
16 TraesCS6A01G138500 chr1A 96.457 254 9 0 4402 4655 535196643 535196390 2.000000e-113 420.0
17 TraesCS6A01G138500 chr1A 94.052 269 14 2 4389 4655 309711975 309712243 1.560000e-109 407.0
18 TraesCS6A01G138500 chr1A 90.878 296 24 3 4052 4345 82151602 82151308 1.210000e-105 394.0
19 TraesCS6A01G138500 chr1A 94.118 136 7 1 3919 4053 82151604 82151469 6.110000e-49 206.0
20 TraesCS6A01G138500 chr4A 96.471 255 9 0 4401 4655 617657127 617657381 5.570000e-114 422.0
21 TraesCS6A01G138500 chr4A 88.179 313 32 5 4043 4353 16197599 16197908 7.360000e-98 368.0
22 TraesCS6A01G138500 chr4A 86.628 172 15 3 3921 4089 472195600 472195766 2.860000e-42 183.0
23 TraesCS6A01G138500 chr5D 96.457 254 9 0 4402 4655 478444122 478443869 2.000000e-113 420.0
24 TraesCS6A01G138500 chr5D 93.478 46 3 0 2292 2337 288588420 288588465 8.360000e-08 69.4
25 TraesCS6A01G138500 chr3B 95.736 258 11 0 4398 4655 155822829 155823086 2.590000e-112 416.0
26 TraesCS6A01G138500 chr3A 91.973 299 21 3 4048 4345 21334350 21334646 2.590000e-112 416.0
27 TraesCS6A01G138500 chr3A 91.525 295 19 3 4052 4345 83218861 83218572 7.260000e-108 401.0
28 TraesCS6A01G138500 chr3A 92.199 282 19 2 4049 4329 672676642 672676363 3.380000e-106 396.0
29 TraesCS6A01G138500 chr3A 91.852 135 11 0 3919 4053 656742521 656742387 6.150000e-44 189.0
30 TraesCS6A01G138500 chrUn 94.697 264 13 1 4392 4655 56924665 56924403 4.340000e-110 409.0
31 TraesCS6A01G138500 chr5A 90.000 310 28 3 4048 4356 53149060 53148753 9.380000e-107 398.0
32 TraesCS6A01G138500 chr5A 89.595 173 13 2 3919 4091 611030030 611029863 1.010000e-51 215.0
33 TraesCS6A01G138500 chr5A 92.143 140 11 0 3914 4053 53149064 53148925 1.020000e-46 198.0
34 TraesCS6A01G138500 chr3D 95.833 48 2 0 2289 2336 66311946 66311993 1.390000e-10 78.7
35 TraesCS6A01G138500 chr3D 91.489 47 4 0 2291 2337 47677812 47677858 1.080000e-06 65.8
36 TraesCS6A01G138500 chr5B 93.878 49 2 1 2289 2337 170597883 170597836 6.460000e-09 73.1
37 TraesCS6A01G138500 chr1D 86.765 68 3 4 2297 2364 85644470 85644531 2.320000e-08 71.3
38 TraesCS6A01G138500 chr7D 95.349 43 2 0 2295 2337 290544899 290544857 8.360000e-08 69.4
39 TraesCS6A01G138500 chr7A 95.349 43 2 0 2295 2337 328987846 328987804 8.360000e-08 69.4
40 TraesCS6A01G138500 chr2D 93.478 46 2 1 2292 2337 20772875 20772831 3.010000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6A01G138500 chr6A 109492510 109497164 4654 False 4396.500000 8597 96.3505 1 4655 2 chr6A.!!$F1 4654
1 TraesCS6A01G138500 chr6B 174968816 174972746 3930 False 3029.000000 5954 97.1510 1 4401 2 chr6B.!!$F1 4400
2 TraesCS6A01G138500 chr6D 91077916 91081797 3881 False 2048.333333 3467 96.3130 1 4401 3 chr6D.!!$F1 4400

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 679 0.043310 CGTTTGCCTCGTTATAGCGC 60.043 55.000 0.0 0.0 0.0 5.92 F
941 977 0.460284 ACCAGTCCTATTTGAGCGCG 60.460 55.000 0.0 0.0 0.0 6.86 F
1005 1041 1.001020 TGGCTGCGTGGAAATGGAT 60.001 52.632 0.0 0.0 0.0 3.41 F
2965 3006 1.278637 CGTTGTTGACCAGAACCGC 59.721 57.895 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2520 2561 1.620323 AGCAGCACACACTGACATCTA 59.380 47.619 0.00 0.0 40.25 1.98 R
2837 2878 2.335320 CGCATTGTGTCGTTTTCAATCG 59.665 45.455 0.00 0.0 30.74 3.34 R
2968 3009 2.279173 AGGCCTTCTACTGGACCAATT 58.721 47.619 0.00 0.0 31.51 2.32 R
4449 4501 0.106519 GCATGCCACTCCAACCCTAT 60.107 55.000 6.36 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.134127 GGCAAAGTAGGCCGCCTG 61.134 66.667 22.95 6.71 42.39 4.85
48 49 3.391382 GACACCTGGACCGGGGAG 61.391 72.222 23.89 17.14 33.40 4.30
186 207 0.458716 CTCCCGTCGCCTTCTTTCTC 60.459 60.000 0.00 0.00 0.00 2.87
187 208 0.898789 TCCCGTCGCCTTCTTTCTCT 60.899 55.000 0.00 0.00 0.00 3.10
199 220 2.711542 TCTTTCTCTTTCCCATTCCGC 58.288 47.619 0.00 0.00 0.00 5.54
200 221 1.745653 CTTTCTCTTTCCCATTCCGCC 59.254 52.381 0.00 0.00 0.00 6.13
231 252 3.438131 TTTCATACATCTCCCTCCCCT 57.562 47.619 0.00 0.00 0.00 4.79
232 253 2.405618 TCATACATCTCCCTCCCCTG 57.594 55.000 0.00 0.00 0.00 4.45
233 254 0.689623 CATACATCTCCCTCCCCTGC 59.310 60.000 0.00 0.00 0.00 4.85
234 255 0.268869 ATACATCTCCCTCCCCTGCA 59.731 55.000 0.00 0.00 0.00 4.41
235 256 0.691078 TACATCTCCCTCCCCTGCAC 60.691 60.000 0.00 0.00 0.00 4.57
236 257 2.367512 ATCTCCCTCCCCTGCACC 60.368 66.667 0.00 0.00 0.00 5.01
237 258 2.965927 ATCTCCCTCCCCTGCACCT 61.966 63.158 0.00 0.00 0.00 4.00
238 259 3.406200 CTCCCTCCCCTGCACCTG 61.406 72.222 0.00 0.00 0.00 4.00
334 355 3.011885 CCGACTCCTCCTCCTCCT 58.988 66.667 0.00 0.00 0.00 3.69
335 356 1.152839 CCGACTCCTCCTCCTCCTC 60.153 68.421 0.00 0.00 0.00 3.71
336 357 1.152839 CGACTCCTCCTCCTCCTCC 60.153 68.421 0.00 0.00 0.00 4.30
337 358 1.641552 CGACTCCTCCTCCTCCTCCT 61.642 65.000 0.00 0.00 0.00 3.69
338 359 0.185175 GACTCCTCCTCCTCCTCCTC 59.815 65.000 0.00 0.00 0.00 3.71
339 360 1.293683 ACTCCTCCTCCTCCTCCTCC 61.294 65.000 0.00 0.00 0.00 4.30
340 361 1.230650 TCCTCCTCCTCCTCCTCCA 60.231 63.158 0.00 0.00 0.00 3.86
341 362 1.075600 CCTCCTCCTCCTCCTCCAC 60.076 68.421 0.00 0.00 0.00 4.02
342 363 1.075600 CTCCTCCTCCTCCTCCACC 60.076 68.421 0.00 0.00 0.00 4.61
460 481 0.109964 GTTTGTGTGCGTGTGTGTGT 60.110 50.000 0.00 0.00 0.00 3.72
461 482 0.110010 TTTGTGTGCGTGTGTGTGTG 60.110 50.000 0.00 0.00 0.00 3.82
499 520 1.642952 CGCCTGCTTGCTTCTCCTTC 61.643 60.000 0.00 0.00 0.00 3.46
504 525 1.374758 CTTGCTTCTCCTTCGCCGT 60.375 57.895 0.00 0.00 0.00 5.68
562 583 1.450531 GCCATGCCACCTGATAGTGC 61.451 60.000 0.00 0.00 36.38 4.40
654 677 2.534757 GTCTCGTTTGCCTCGTTATAGC 59.465 50.000 0.00 0.00 0.00 2.97
655 678 1.517276 CTCGTTTGCCTCGTTATAGCG 59.483 52.381 2.12 2.12 0.00 4.26
656 679 0.043310 CGTTTGCCTCGTTATAGCGC 60.043 55.000 0.00 0.00 0.00 5.92
809 832 2.627699 TCCCTGTTCCAAGTGAAAATGC 59.372 45.455 0.00 0.00 33.94 3.56
870 906 8.576936 TTCGCTGTTATTTTTCCGTTATTTTT 57.423 26.923 0.00 0.00 0.00 1.94
941 977 0.460284 ACCAGTCCTATTTGAGCGCG 60.460 55.000 0.00 0.00 0.00 6.86
1005 1041 1.001020 TGGCTGCGTGGAAATGGAT 60.001 52.632 0.00 0.00 0.00 3.41
1088 1124 5.352569 GGTATGATTCTGCACCTGTATATGC 59.647 44.000 0.00 0.00 42.40 3.14
1212 1248 1.871418 TCTGAGCTCAGGCAGGTAAT 58.129 50.000 36.92 0.00 43.91 1.89
1223 1259 5.128205 TCAGGCAGGTAATTGATTCTGATG 58.872 41.667 0.00 0.00 0.00 3.07
1472 1510 5.221048 GCAAGTCATCACACTACTGGTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
1544 1582 5.630415 AGCATGCTTATCAAGTACCCTAA 57.370 39.130 16.30 0.00 0.00 2.69
1635 1674 5.461078 CAGCTTCAAAACATCAAAGTCCTTG 59.539 40.000 0.00 0.00 36.25 3.61
1654 1693 7.711339 AGTCCTTGAAATACTTCCACGATATTC 59.289 37.037 0.00 0.00 0.00 1.75
1676 1715 5.863965 TCTGTCCTTCAAATCATGTGTGTA 58.136 37.500 0.00 0.00 0.00 2.90
1688 1727 9.988350 CAAATCATGTGTGTAAATAACCTAGAC 57.012 33.333 0.00 0.00 0.00 2.59
1697 1736 5.865552 TGTAAATAACCTAGACGTGTTCTGC 59.134 40.000 0.00 0.00 35.55 4.26
1718 1757 6.488344 TCTGCCTGTACAATCTATCTGTAGAG 59.512 42.308 0.00 1.30 40.16 2.43
1744 1783 9.233232 GAACAAAAACTAACACGATTGAAGATT 57.767 29.630 0.00 0.00 0.00 2.40
1752 1791 8.818057 ACTAACACGATTGAAGATTACATTAGC 58.182 33.333 0.00 0.00 0.00 3.09
1851 1890 4.034742 ACAAATTGTTGGACTGTACGTGTC 59.965 41.667 0.00 9.50 39.22 3.67
1980 2019 3.502211 AGTACAACGAAGCATTTCTTGGG 59.498 43.478 0.00 0.00 35.17 4.12
2022 2061 2.785269 TGCTTGGATTATGGACCCTGAT 59.215 45.455 0.00 0.00 0.00 2.90
2074 2113 3.731089 TCATGTGCAGCAATATCGATGA 58.269 40.909 8.54 0.00 0.00 2.92
2172 2211 5.826737 CCAGAATTTGCATTAGACATCCTCT 59.173 40.000 0.00 0.00 0.00 3.69
2241 2280 1.736681 GCCATGACTCAAGAACTCAGC 59.263 52.381 0.00 0.00 0.00 4.26
2303 2342 8.911965 GCCTCCATTAGTAATATACTACTACCC 58.088 40.741 0.60 0.00 40.74 3.69
2305 2344 9.418839 CTCCATTAGTAATATACTACTACCCCC 57.581 40.741 0.60 0.00 40.74 5.40
2339 2378 9.846248 AATATAAGATGTTTTTGCAGTTCAGTC 57.154 29.630 0.00 0.00 0.00 3.51
2520 2561 4.599047 TTCTTTGATGGCGGTTTTCATT 57.401 36.364 0.00 0.00 0.00 2.57
2560 2601 4.695455 TGCTGCTTAGTTCACTAATTCACC 59.305 41.667 0.00 0.00 37.75 4.02
2561 2602 4.938226 GCTGCTTAGTTCACTAATTCACCT 59.062 41.667 0.00 0.00 37.75 4.00
2562 2603 5.412904 GCTGCTTAGTTCACTAATTCACCTT 59.587 40.000 0.00 0.00 37.75 3.50
2832 2873 6.263168 AGCAGTAAGTTTTTGTGATAGCAACT 59.737 34.615 0.00 0.00 0.00 3.16
2965 3006 1.278637 CGTTGTTGACCAGAACCGC 59.721 57.895 0.00 0.00 0.00 5.68
2968 3009 0.179234 TTGTTGACCAGAACCGCTCA 59.821 50.000 0.00 0.00 0.00 4.26
2995 3036 1.406614 CCAGTAGAAGGCCTTGCTCTG 60.407 57.143 26.25 23.97 0.00 3.35
3004 3045 1.611673 GGCCTTGCTCTGAACTTAGCA 60.612 52.381 0.00 0.00 46.59 3.49
3126 3167 4.771577 ACATTGATTGTGGCTAATGGTCAA 59.228 37.500 0.00 0.00 37.11 3.18
3172 3213 9.797642 ACATTCTAATGAGTAATGCATATGGAA 57.202 29.630 9.60 0.00 39.67 3.53
3319 3367 4.379813 CGAGTAGTCGTTTTAGCTTACCCA 60.380 45.833 11.92 0.00 41.57 4.51
3542 3591 5.825679 TGCCTTAACCGCACAATATTTCTAT 59.174 36.000 0.00 0.00 0.00 1.98
3657 3706 7.273381 GTCAATTTCCAAGAATACAAATGACCG 59.727 37.037 0.00 0.00 0.00 4.79
3834 3883 7.877612 TGTTCATATTGACTGCTAACTTGAAGA 59.122 33.333 0.00 0.00 0.00 2.87
3920 3972 3.998913 TCAAGTGGCTCCACATGATAA 57.001 42.857 19.40 2.29 45.66 1.75
3921 3973 3.877559 TCAAGTGGCTCCACATGATAAG 58.122 45.455 19.40 3.83 45.66 1.73
3922 3974 3.370846 TCAAGTGGCTCCACATGATAAGG 60.371 47.826 19.40 0.00 45.66 2.69
3923 3975 1.312815 GTGGCTCCACATGATAAGGC 58.687 55.000 13.81 6.17 45.53 4.35
3924 3976 0.183492 TGGCTCCACATGATAAGGCC 59.817 55.000 0.00 0.00 38.67 5.19
3925 3977 0.475906 GGCTCCACATGATAAGGCCT 59.524 55.000 0.00 0.00 35.73 5.19
3926 3978 1.133668 GGCTCCACATGATAAGGCCTT 60.134 52.381 24.18 24.18 35.73 4.35
3927 3979 2.225467 GCTCCACATGATAAGGCCTTC 58.775 52.381 24.49 9.80 0.00 3.46
3928 3980 2.158696 GCTCCACATGATAAGGCCTTCT 60.159 50.000 24.49 13.31 0.00 2.85
3929 3981 3.686691 GCTCCACATGATAAGGCCTTCTT 60.687 47.826 24.49 11.35 39.40 2.52
3930 3982 4.530875 CTCCACATGATAAGGCCTTCTTT 58.469 43.478 24.49 8.39 36.93 2.52
3931 3983 4.272489 TCCACATGATAAGGCCTTCTTTG 58.728 43.478 24.49 17.36 36.93 2.77
3932 3984 3.382546 CCACATGATAAGGCCTTCTTTGG 59.617 47.826 24.49 16.41 36.93 3.28
3933 3985 4.019174 CACATGATAAGGCCTTCTTTGGT 58.981 43.478 24.49 13.51 36.93 3.67
3934 3986 4.463891 CACATGATAAGGCCTTCTTTGGTT 59.536 41.667 24.49 0.00 36.93 3.67
3935 3987 5.047092 CACATGATAAGGCCTTCTTTGGTTT 60.047 40.000 24.49 0.00 36.93 3.27
3936 3988 6.152661 CACATGATAAGGCCTTCTTTGGTTTA 59.847 38.462 24.49 0.18 36.93 2.01
3937 3989 6.897413 ACATGATAAGGCCTTCTTTGGTTTAT 59.103 34.615 24.49 6.25 36.93 1.40
3938 3990 8.058847 ACATGATAAGGCCTTCTTTGGTTTATA 58.941 33.333 24.49 0.00 36.93 0.98
3939 3991 8.571336 CATGATAAGGCCTTCTTTGGTTTATAG 58.429 37.037 24.49 0.00 36.93 1.31
3940 3992 7.060421 TGATAAGGCCTTCTTTGGTTTATAGG 58.940 38.462 24.49 0.00 36.93 2.57
3941 3993 4.251103 AGGCCTTCTTTGGTTTATAGGG 57.749 45.455 0.00 0.00 0.00 3.53
3942 3994 3.596500 AGGCCTTCTTTGGTTTATAGGGT 59.403 43.478 0.00 0.00 0.00 4.34
3943 3995 4.791880 AGGCCTTCTTTGGTTTATAGGGTA 59.208 41.667 0.00 0.00 0.00 3.69
3944 3996 5.104067 AGGCCTTCTTTGGTTTATAGGGTAG 60.104 44.000 0.00 0.00 0.00 3.18
3945 3997 5.131067 GCCTTCTTTGGTTTATAGGGTAGG 58.869 45.833 0.00 0.00 0.00 3.18
3946 3998 5.104235 GCCTTCTTTGGTTTATAGGGTAGGA 60.104 44.000 0.00 0.00 0.00 2.94
3947 3999 6.579647 GCCTTCTTTGGTTTATAGGGTAGGAA 60.580 42.308 0.00 0.00 0.00 3.36
3948 4000 7.583625 CCTTCTTTGGTTTATAGGGTAGGAAT 58.416 38.462 0.00 0.00 0.00 3.01
3949 4001 8.720537 CCTTCTTTGGTTTATAGGGTAGGAATA 58.279 37.037 0.00 0.00 0.00 1.75
3952 4004 9.455144 TCTTTGGTTTATAGGGTAGGAATATCA 57.545 33.333 0.00 0.00 0.00 2.15
3956 4008 9.502035 TGGTTTATAGGGTAGGAATATCATAGG 57.498 37.037 0.00 0.00 0.00 2.57
3957 4009 9.725206 GGTTTATAGGGTAGGAATATCATAGGA 57.275 37.037 0.00 0.00 0.00 2.94
3985 4037 8.056407 AGAAAAATTATAGAAAGTGAGGTGGC 57.944 34.615 0.00 0.00 0.00 5.01
3986 4038 7.669722 AGAAAAATTATAGAAAGTGAGGTGGCA 59.330 33.333 0.00 0.00 0.00 4.92
3987 4039 7.961326 AAAATTATAGAAAGTGAGGTGGCAT 57.039 32.000 0.00 0.00 0.00 4.40
3988 4040 6.949352 AATTATAGAAAGTGAGGTGGCATG 57.051 37.500 0.00 0.00 0.00 4.06
3989 4041 2.113860 TAGAAAGTGAGGTGGCATGC 57.886 50.000 9.90 9.90 0.00 4.06
3990 4042 0.111061 AGAAAGTGAGGTGGCATGCA 59.889 50.000 21.36 2.54 0.00 3.96
3991 4043 1.180029 GAAAGTGAGGTGGCATGCAT 58.820 50.000 21.36 1.34 0.00 3.96
3992 4044 1.133790 GAAAGTGAGGTGGCATGCATC 59.866 52.381 21.36 11.31 0.00 3.91
3993 4045 0.330604 AAGTGAGGTGGCATGCATCT 59.669 50.000 21.36 13.00 0.00 2.90
3994 4046 0.107312 AGTGAGGTGGCATGCATCTC 60.107 55.000 21.36 20.67 0.00 2.75
3995 4047 0.393402 GTGAGGTGGCATGCATCTCA 60.393 55.000 23.67 23.67 32.79 3.27
3996 4048 0.393402 TGAGGTGGCATGCATCTCAC 60.393 55.000 23.67 19.45 30.58 3.51
3997 4049 0.107312 GAGGTGGCATGCATCTCACT 60.107 55.000 21.36 8.10 0.00 3.41
3998 4050 0.330604 AGGTGGCATGCATCTCACTT 59.669 50.000 21.36 11.62 0.00 3.16
3999 4051 0.737219 GGTGGCATGCATCTCACTTC 59.263 55.000 21.36 2.96 0.00 3.01
4000 4052 0.737219 GTGGCATGCATCTCACTTCC 59.263 55.000 21.36 0.00 0.00 3.46
4001 4053 0.622136 TGGCATGCATCTCACTTCCT 59.378 50.000 21.36 0.00 0.00 3.36
4002 4054 1.839354 TGGCATGCATCTCACTTCCTA 59.161 47.619 21.36 0.00 0.00 2.94
4003 4055 2.440627 TGGCATGCATCTCACTTCCTAT 59.559 45.455 21.36 0.00 0.00 2.57
4004 4056 3.647590 TGGCATGCATCTCACTTCCTATA 59.352 43.478 21.36 0.00 0.00 1.31
4005 4057 4.252073 GGCATGCATCTCACTTCCTATAG 58.748 47.826 21.36 0.00 0.00 1.31
4006 4058 4.252073 GCATGCATCTCACTTCCTATAGG 58.748 47.826 14.21 13.07 0.00 2.57
4007 4059 4.020751 GCATGCATCTCACTTCCTATAGGA 60.021 45.833 18.00 18.00 43.73 2.94
4022 4074 7.979786 TCCTATAGGAAAAGAGATGTCACTT 57.020 36.000 19.59 0.00 42.18 3.16
4023 4075 7.786030 TCCTATAGGAAAAGAGATGTCACTTG 58.214 38.462 19.59 0.00 42.18 3.16
4024 4076 7.619698 TCCTATAGGAAAAGAGATGTCACTTGA 59.380 37.037 19.59 0.00 42.18 3.02
4025 4077 8.428063 CCTATAGGAAAAGAGATGTCACTTGAT 58.572 37.037 14.11 0.00 37.39 2.57
4026 4078 9.829507 CTATAGGAAAAGAGATGTCACTTGATT 57.170 33.333 0.00 0.00 0.00 2.57
4027 4079 8.729805 ATAGGAAAAGAGATGTCACTTGATTC 57.270 34.615 0.00 0.00 0.00 2.52
4028 4080 6.537355 AGGAAAAGAGATGTCACTTGATTCA 58.463 36.000 0.00 0.00 0.00 2.57
4029 4081 7.173722 AGGAAAAGAGATGTCACTTGATTCAT 58.826 34.615 0.00 0.00 0.00 2.57
4030 4082 8.324306 AGGAAAAGAGATGTCACTTGATTCATA 58.676 33.333 0.00 0.00 0.00 2.15
4031 4083 8.394121 GGAAAAGAGATGTCACTTGATTCATAC 58.606 37.037 0.00 0.00 0.00 2.39
4032 4084 7.531280 AAAGAGATGTCACTTGATTCATACG 57.469 36.000 0.00 0.00 0.00 3.06
4033 4085 6.456795 AGAGATGTCACTTGATTCATACGA 57.543 37.500 0.00 0.00 0.00 3.43
4034 4086 7.048629 AGAGATGTCACTTGATTCATACGAT 57.951 36.000 0.00 0.00 0.00 3.73
4035 4087 8.171164 AGAGATGTCACTTGATTCATACGATA 57.829 34.615 0.00 0.00 0.00 2.92
4036 4088 8.296000 AGAGATGTCACTTGATTCATACGATAG 58.704 37.037 0.00 0.00 46.19 2.08
4037 4089 7.374272 AGATGTCACTTGATTCATACGATAGG 58.626 38.462 0.00 0.00 43.77 2.57
4038 4090 6.709018 TGTCACTTGATTCATACGATAGGA 57.291 37.500 0.00 0.00 43.77 2.94
4039 4091 7.290110 TGTCACTTGATTCATACGATAGGAT 57.710 36.000 0.00 0.00 43.93 3.24
4040 4092 7.726216 TGTCACTTGATTCATACGATAGGATT 58.274 34.615 0.00 0.00 37.79 3.01
4041 4093 8.204160 TGTCACTTGATTCATACGATAGGATTT 58.796 33.333 0.00 0.00 37.79 2.17
4042 4094 9.046296 GTCACTTGATTCATACGATAGGATTTT 57.954 33.333 0.00 0.00 37.79 1.82
4043 4095 9.613428 TCACTTGATTCATACGATAGGATTTTT 57.387 29.630 0.00 0.00 37.79 1.94
4063 4115 5.867903 TTTTTCATTGAGGCCTTCTTTGA 57.132 34.783 6.77 5.58 0.00 2.69
4064 4116 6.423776 TTTTTCATTGAGGCCTTCTTTGAT 57.576 33.333 6.77 0.00 0.00 2.57
4065 4117 6.423776 TTTTCATTGAGGCCTTCTTTGATT 57.576 33.333 6.77 0.00 0.00 2.57
4066 4118 6.423776 TTTCATTGAGGCCTTCTTTGATTT 57.576 33.333 6.77 0.00 0.00 2.17
4067 4119 7.537596 TTTCATTGAGGCCTTCTTTGATTTA 57.462 32.000 6.77 0.00 0.00 1.40
4068 4120 7.722949 TTCATTGAGGCCTTCTTTGATTTAT 57.277 32.000 6.77 0.00 0.00 1.40
4069 4121 8.821686 TTCATTGAGGCCTTCTTTGATTTATA 57.178 30.769 6.77 0.00 0.00 0.98
4070 4122 8.821686 TCATTGAGGCCTTCTTTGATTTATAA 57.178 30.769 6.77 0.00 0.00 0.98
4071 4123 8.906867 TCATTGAGGCCTTCTTTGATTTATAAG 58.093 33.333 6.77 0.00 0.00 1.73
4072 4124 7.645058 TTGAGGCCTTCTTTGATTTATAAGG 57.355 36.000 6.77 0.00 39.78 2.69
4073 4125 6.731467 TGAGGCCTTCTTTGATTTATAAGGT 58.269 36.000 6.77 0.00 39.15 3.50
4074 4126 7.867921 TGAGGCCTTCTTTGATTTATAAGGTA 58.132 34.615 6.77 0.00 39.15 3.08
4075 4127 7.993183 TGAGGCCTTCTTTGATTTATAAGGTAG 59.007 37.037 6.77 0.00 39.15 3.18
4076 4128 7.290813 AGGCCTTCTTTGATTTATAAGGTAGG 58.709 38.462 0.00 0.00 39.15 3.18
4077 4129 7.128883 AGGCCTTCTTTGATTTATAAGGTAGGA 59.871 37.037 0.00 0.00 39.15 2.94
4078 4130 7.778382 GGCCTTCTTTGATTTATAAGGTAGGAA 59.222 37.037 0.00 0.00 39.15 3.36
4079 4131 9.355916 GCCTTCTTTGATTTATAAGGTAGGAAT 57.644 33.333 0.00 0.00 39.15 3.01
4110 4162 8.337118 AGGAATAGGAAAATCATAGGAAGTGA 57.663 34.615 0.00 0.00 0.00 3.41
4111 4163 8.435982 AGGAATAGGAAAATCATAGGAAGTGAG 58.564 37.037 0.00 0.00 0.00 3.51
4112 4164 7.663493 GGAATAGGAAAATCATAGGAAGTGAGG 59.337 40.741 0.00 0.00 0.00 3.86
4113 4165 7.698163 ATAGGAAAATCATAGGAAGTGAGGT 57.302 36.000 0.00 0.00 0.00 3.85
4114 4166 5.749462 AGGAAAATCATAGGAAGTGAGGTG 58.251 41.667 0.00 0.00 0.00 4.00
4115 4167 4.884164 GGAAAATCATAGGAAGTGAGGTGG 59.116 45.833 0.00 0.00 0.00 4.61
4116 4168 3.567478 AATCATAGGAAGTGAGGTGGC 57.433 47.619 0.00 0.00 0.00 5.01
4117 4169 1.951209 TCATAGGAAGTGAGGTGGCA 58.049 50.000 0.00 0.00 0.00 4.92
4118 4170 2.481441 TCATAGGAAGTGAGGTGGCAT 58.519 47.619 0.00 0.00 0.00 4.40
4119 4171 2.171237 TCATAGGAAGTGAGGTGGCATG 59.829 50.000 0.00 0.00 0.00 4.06
4120 4172 0.253044 TAGGAAGTGAGGTGGCATGC 59.747 55.000 9.90 9.90 0.00 4.06
4121 4173 1.303561 GGAAGTGAGGTGGCATGCA 60.304 57.895 21.36 2.54 0.00 3.96
4122 4174 0.682209 GGAAGTGAGGTGGCATGCAT 60.682 55.000 21.36 1.34 0.00 3.96
4123 4175 0.737219 GAAGTGAGGTGGCATGCATC 59.263 55.000 21.36 11.31 0.00 3.91
4124 4176 0.330604 AAGTGAGGTGGCATGCATCT 59.669 50.000 21.36 13.00 0.00 2.90
4125 4177 0.107312 AGTGAGGTGGCATGCATCTC 60.107 55.000 21.36 20.67 0.00 2.75
4126 4178 0.393402 GTGAGGTGGCATGCATCTCA 60.393 55.000 23.67 23.67 32.79 3.27
4127 4179 0.393402 TGAGGTGGCATGCATCTCAC 60.393 55.000 23.67 19.45 30.58 3.51
4128 4180 0.107312 GAGGTGGCATGCATCTCACT 60.107 55.000 21.36 8.10 0.00 3.41
4129 4181 0.330604 AGGTGGCATGCATCTCACTT 59.669 50.000 21.36 11.62 0.00 3.16
4130 4182 0.737219 GGTGGCATGCATCTCACTTC 59.263 55.000 21.36 2.96 0.00 3.01
4131 4183 0.737219 GTGGCATGCATCTCACTTCC 59.263 55.000 21.36 0.00 0.00 3.46
4132 4184 0.622136 TGGCATGCATCTCACTTCCT 59.378 50.000 21.36 0.00 0.00 3.36
4133 4185 1.839354 TGGCATGCATCTCACTTCCTA 59.161 47.619 21.36 0.00 0.00 2.94
4134 4186 2.440627 TGGCATGCATCTCACTTCCTAT 59.559 45.455 21.36 0.00 0.00 2.57
4135 4187 3.647590 TGGCATGCATCTCACTTCCTATA 59.352 43.478 21.36 0.00 0.00 1.31
4136 4188 4.252073 GGCATGCATCTCACTTCCTATAG 58.748 47.826 21.36 0.00 0.00 1.31
4137 4189 4.252073 GCATGCATCTCACTTCCTATAGG 58.748 47.826 14.21 13.07 0.00 2.57
4138 4190 4.829968 CATGCATCTCACTTCCTATAGGG 58.170 47.826 18.97 6.22 35.41 3.53
4139 4191 4.199002 TGCATCTCACTTCCTATAGGGA 57.801 45.455 18.97 9.53 43.41 4.20
4152 4204 6.031964 TCCTATAGGGAAAGAGATGTCACT 57.968 41.667 18.97 0.00 41.91 3.41
4153 4205 6.444704 TCCTATAGGGAAAGAGATGTCACTT 58.555 40.000 18.97 0.00 41.91 3.16
4154 4206 6.325028 TCCTATAGGGAAAGAGATGTCACTTG 59.675 42.308 18.97 0.00 41.91 3.16
4155 4207 6.325028 CCTATAGGGAAAGAGATGTCACTTGA 59.675 42.308 11.33 0.00 37.23 3.02
4156 4208 6.821616 ATAGGGAAAGAGATGTCACTTGAT 57.178 37.500 0.00 0.00 0.00 2.57
4157 4209 5.511386 AGGGAAAGAGATGTCACTTGATT 57.489 39.130 0.00 0.00 0.00 2.57
4158 4210 5.495640 AGGGAAAGAGATGTCACTTGATTC 58.504 41.667 0.00 0.00 0.00 2.52
4159 4211 5.013495 AGGGAAAGAGATGTCACTTGATTCA 59.987 40.000 0.00 0.00 0.00 2.57
4160 4212 5.707298 GGGAAAGAGATGTCACTTGATTCAA 59.293 40.000 0.00 0.00 0.00 2.69
4161 4213 6.128063 GGGAAAGAGATGTCACTTGATTCAAG 60.128 42.308 22.00 22.00 45.85 3.02
4162 4214 6.128063 GGAAAGAGATGTCACTTGATTCAAGG 60.128 42.308 25.94 16.51 44.81 3.61
4163 4215 5.752036 AGAGATGTCACTTGATTCAAGGA 57.248 39.130 25.94 18.15 44.81 3.36
4164 4216 6.310764 AGAGATGTCACTTGATTCAAGGAT 57.689 37.500 25.94 14.10 44.81 3.24
4165 4217 7.429374 AGAGATGTCACTTGATTCAAGGATA 57.571 36.000 25.94 18.68 44.81 2.59
4166 4218 7.499292 AGAGATGTCACTTGATTCAAGGATAG 58.501 38.462 25.94 14.72 44.81 2.08
4167 4219 6.590068 AGATGTCACTTGATTCAAGGATAGG 58.410 40.000 25.94 12.46 44.81 2.57
4168 4220 6.385176 AGATGTCACTTGATTCAAGGATAGGA 59.615 38.462 25.94 14.14 44.81 2.94
4169 4221 6.566079 TGTCACTTGATTCAAGGATAGGAT 57.434 37.500 25.94 4.77 44.81 3.24
4170 4222 6.962182 TGTCACTTGATTCAAGGATAGGATT 58.038 36.000 25.94 4.11 44.81 3.01
4171 4223 7.405292 TGTCACTTGATTCAAGGATAGGATTT 58.595 34.615 25.94 3.46 44.81 2.17
4172 4224 7.890127 TGTCACTTGATTCAAGGATAGGATTTT 59.110 33.333 25.94 2.81 44.81 1.82
4173 4225 8.743714 GTCACTTGATTCAAGGATAGGATTTTT 58.256 33.333 25.94 2.35 44.81 1.94
4219 4271 4.953940 TTTCCCCTTTGAAATGTCAAGG 57.046 40.909 0.69 0.69 44.49 3.61
4220 4272 3.893753 TCCCCTTTGAAATGTCAAGGA 57.106 42.857 9.26 5.27 44.49 3.36
4221 4273 4.402616 TCCCCTTTGAAATGTCAAGGAT 57.597 40.909 9.26 0.00 44.49 3.24
4222 4274 4.750941 TCCCCTTTGAAATGTCAAGGATT 58.249 39.130 9.26 0.00 44.49 3.01
4223 4275 6.464180 TTTCCCCTTTGAAATGTCAAGGATTG 60.464 38.462 9.26 0.00 44.49 2.67
4224 4276 8.569460 TTTCCCCTTTGAAATGTCAAGGATTGA 61.569 37.037 9.26 0.56 44.49 2.57
4271 4323 7.334844 GAATCTATTCCTACAAACCAAAGGG 57.665 40.000 0.00 0.00 41.29 3.95
4272 4324 4.595986 TCTATTCCTACAAACCAAAGGGC 58.404 43.478 0.00 0.00 37.90 5.19
4273 4325 3.542969 ATTCCTACAAACCAAAGGGCT 57.457 42.857 0.00 0.00 37.90 5.19
4274 4326 3.322191 TTCCTACAAACCAAAGGGCTT 57.678 42.857 0.00 0.00 37.90 4.35
4275 4327 3.322191 TCCTACAAACCAAAGGGCTTT 57.678 42.857 0.00 0.00 37.90 3.51
4276 4328 4.456662 TCCTACAAACCAAAGGGCTTTA 57.543 40.909 0.00 0.00 37.90 1.85
4277 4329 5.005628 TCCTACAAACCAAAGGGCTTTAT 57.994 39.130 0.00 0.00 37.90 1.40
4278 4330 6.142259 TCCTACAAACCAAAGGGCTTTATA 57.858 37.500 0.00 0.00 37.90 0.98
4279 4331 6.184789 TCCTACAAACCAAAGGGCTTTATAG 58.815 40.000 0.00 0.00 37.90 1.31
4280 4332 5.359860 CCTACAAACCAAAGGGCTTTATAGG 59.640 44.000 0.00 0.00 37.90 2.57
4281 4333 5.005628 ACAAACCAAAGGGCTTTATAGGA 57.994 39.130 3.08 0.00 37.90 2.94
4282 4334 5.399113 ACAAACCAAAGGGCTTTATAGGAA 58.601 37.500 3.08 0.00 37.90 3.36
4283 4335 6.022958 ACAAACCAAAGGGCTTTATAGGAAT 58.977 36.000 3.08 0.00 37.90 3.01
4284 4336 6.500400 ACAAACCAAAGGGCTTTATAGGAATT 59.500 34.615 3.08 0.00 37.90 2.17
4285 4337 7.017155 ACAAACCAAAGGGCTTTATAGGAATTT 59.983 33.333 3.08 0.00 37.90 1.82
4286 4338 7.568128 AACCAAAGGGCTTTATAGGAATTTT 57.432 32.000 3.08 0.00 37.90 1.82
4287 4339 7.568128 ACCAAAGGGCTTTATAGGAATTTTT 57.432 32.000 3.08 0.00 37.90 1.94
4288 4340 7.620880 ACCAAAGGGCTTTATAGGAATTTTTC 58.379 34.615 3.08 0.00 37.90 2.29
4289 4341 7.311046 ACCAAAGGGCTTTATAGGAATTTTTCC 60.311 37.037 0.00 0.00 44.02 3.13
4305 4357 9.817809 GGAATTTTTCCTACAAAAATCCTATCC 57.182 33.333 5.70 5.72 46.57 2.59
4308 4360 9.997172 ATTTTTCCTACAAAAATCCTATCCTCT 57.003 29.630 0.20 0.00 35.59 3.69
4343 4395 7.726216 ACAAGATTCCTTTAAACCAAAAGAGG 58.274 34.615 0.00 0.00 38.50 3.69
4344 4396 6.346477 AGATTCCTTTAAACCAAAAGAGGC 57.654 37.500 0.00 0.00 38.50 4.70
4401 4453 5.349817 GGCATGGACTATCTCATACATTTCG 59.650 44.000 0.00 0.00 0.00 3.46
4402 4454 5.349817 GCATGGACTATCTCATACATTTCGG 59.650 44.000 0.00 0.00 0.00 4.30
4403 4455 4.883083 TGGACTATCTCATACATTTCGGC 58.117 43.478 0.00 0.00 0.00 5.54
4404 4456 4.246458 GGACTATCTCATACATTTCGGCC 58.754 47.826 0.00 0.00 0.00 6.13
4405 4457 4.246458 GACTATCTCATACATTTCGGCCC 58.754 47.826 0.00 0.00 0.00 5.80
4406 4458 3.904339 ACTATCTCATACATTTCGGCCCT 59.096 43.478 0.00 0.00 0.00 5.19
4407 4459 2.910688 TCTCATACATTTCGGCCCTC 57.089 50.000 0.00 0.00 0.00 4.30
4408 4460 2.398588 TCTCATACATTTCGGCCCTCT 58.601 47.619 0.00 0.00 0.00 3.69
4409 4461 2.771943 TCTCATACATTTCGGCCCTCTT 59.228 45.455 0.00 0.00 0.00 2.85
4410 4462 3.199946 TCTCATACATTTCGGCCCTCTTT 59.800 43.478 0.00 0.00 0.00 2.52
4411 4463 3.278574 TCATACATTTCGGCCCTCTTTG 58.721 45.455 0.00 0.00 0.00 2.77
4412 4464 3.054728 TCATACATTTCGGCCCTCTTTGA 60.055 43.478 0.00 0.00 0.00 2.69
4413 4465 2.514458 ACATTTCGGCCCTCTTTGAT 57.486 45.000 0.00 0.00 0.00 2.57
4414 4466 2.807676 ACATTTCGGCCCTCTTTGATT 58.192 42.857 0.00 0.00 0.00 2.57
4415 4467 2.755103 ACATTTCGGCCCTCTTTGATTC 59.245 45.455 0.00 0.00 0.00 2.52
4416 4468 2.577606 TTTCGGCCCTCTTTGATTCA 57.422 45.000 0.00 0.00 0.00 2.57
4417 4469 1.821216 TTCGGCCCTCTTTGATTCAC 58.179 50.000 0.00 0.00 0.00 3.18
4418 4470 0.690192 TCGGCCCTCTTTGATTCACA 59.310 50.000 0.00 0.00 0.00 3.58
4419 4471 1.089920 CGGCCCTCTTTGATTCACAG 58.910 55.000 0.00 0.00 0.00 3.66
4420 4472 1.467920 GGCCCTCTTTGATTCACAGG 58.532 55.000 0.00 0.23 0.00 4.00
4421 4473 1.004745 GGCCCTCTTTGATTCACAGGA 59.995 52.381 0.00 0.00 0.00 3.86
4422 4474 2.357569 GGCCCTCTTTGATTCACAGGAT 60.358 50.000 0.00 0.00 0.00 3.24
4423 4475 3.359950 GCCCTCTTTGATTCACAGGATT 58.640 45.455 6.96 0.00 0.00 3.01
4424 4476 3.766051 GCCCTCTTTGATTCACAGGATTT 59.234 43.478 6.96 0.00 0.00 2.17
4425 4477 4.221482 GCCCTCTTTGATTCACAGGATTTT 59.779 41.667 6.96 0.00 0.00 1.82
4426 4478 5.623141 GCCCTCTTTGATTCACAGGATTTTC 60.623 44.000 6.96 0.00 0.00 2.29
4427 4479 5.477984 CCCTCTTTGATTCACAGGATTTTCA 59.522 40.000 6.96 0.00 0.00 2.69
4428 4480 6.015180 CCCTCTTTGATTCACAGGATTTTCAA 60.015 38.462 6.96 0.00 0.00 2.69
4429 4481 7.436118 CCTCTTTGATTCACAGGATTTTCAAA 58.564 34.615 0.19 0.00 0.00 2.69
4430 4482 7.927629 CCTCTTTGATTCACAGGATTTTCAAAA 59.072 33.333 0.19 0.00 0.00 2.44
4431 4483 8.647143 TCTTTGATTCACAGGATTTTCAAAAC 57.353 30.769 0.19 0.00 0.00 2.43
4432 4484 7.434897 TCTTTGATTCACAGGATTTTCAAAACG 59.565 33.333 0.19 0.00 0.00 3.60
4433 4485 6.142818 TGATTCACAGGATTTTCAAAACGT 57.857 33.333 0.00 0.00 0.00 3.99
4434 4486 7.265647 TGATTCACAGGATTTTCAAAACGTA 57.734 32.000 0.00 0.00 0.00 3.57
4435 4487 7.359595 TGATTCACAGGATTTTCAAAACGTAG 58.640 34.615 0.00 0.00 0.00 3.51
4436 4488 5.682943 TCACAGGATTTTCAAAACGTAGG 57.317 39.130 0.00 0.00 0.00 3.18
4437 4489 5.369833 TCACAGGATTTTCAAAACGTAGGA 58.630 37.500 0.00 0.00 0.00 2.94
4438 4490 5.823570 TCACAGGATTTTCAAAACGTAGGAA 59.176 36.000 0.00 0.00 0.00 3.36
4439 4491 6.488683 TCACAGGATTTTCAAAACGTAGGAAT 59.511 34.615 0.00 0.00 0.00 3.01
4440 4492 7.662258 TCACAGGATTTTCAAAACGTAGGAATA 59.338 33.333 0.00 0.00 0.00 1.75
4441 4493 7.962918 CACAGGATTTTCAAAACGTAGGAATAG 59.037 37.037 0.00 0.00 0.00 1.73
4442 4494 7.120726 ACAGGATTTTCAAAACGTAGGAATAGG 59.879 37.037 0.00 0.00 0.00 2.57
4443 4495 7.335924 CAGGATTTTCAAAACGTAGGAATAGGA 59.664 37.037 0.00 0.00 0.00 2.94
4444 4496 7.886446 AGGATTTTCAAAACGTAGGAATAGGAA 59.114 33.333 0.00 0.00 0.00 3.36
4445 4497 8.517056 GGATTTTCAAAACGTAGGAATAGGAAA 58.483 33.333 0.00 0.00 0.00 3.13
4446 4498 9.902196 GATTTTCAAAACGTAGGAATAGGAAAA 57.098 29.630 0.00 0.00 36.52 2.29
4447 4499 9.908152 ATTTTCAAAACGTAGGAATAGGAAAAG 57.092 29.630 0.00 0.00 35.84 2.27
4448 4500 8.454570 TTTCAAAACGTAGGAATAGGAAAAGT 57.545 30.769 0.00 0.00 0.00 2.66
4449 4501 9.558396 TTTCAAAACGTAGGAATAGGAAAAGTA 57.442 29.630 0.00 0.00 0.00 2.24
4450 4502 9.729281 TTCAAAACGTAGGAATAGGAAAAGTAT 57.271 29.630 0.00 0.00 0.00 2.12
4453 4505 9.828039 AAAACGTAGGAATAGGAAAAGTATAGG 57.172 33.333 0.00 0.00 0.00 2.57
4454 4506 7.536159 ACGTAGGAATAGGAAAAGTATAGGG 57.464 40.000 0.00 0.00 0.00 3.53
4455 4507 7.071917 ACGTAGGAATAGGAAAAGTATAGGGT 58.928 38.462 0.00 0.00 0.00 4.34
4456 4508 7.566509 ACGTAGGAATAGGAAAAGTATAGGGTT 59.433 37.037 0.00 0.00 0.00 4.11
4457 4509 7.871463 CGTAGGAATAGGAAAAGTATAGGGTTG 59.129 40.741 0.00 0.00 0.00 3.77
4458 4510 7.150447 AGGAATAGGAAAAGTATAGGGTTGG 57.850 40.000 0.00 0.00 0.00 3.77
4459 4511 6.912561 AGGAATAGGAAAAGTATAGGGTTGGA 59.087 38.462 0.00 0.00 0.00 3.53
4460 4512 7.072581 AGGAATAGGAAAAGTATAGGGTTGGAG 59.927 40.741 0.00 0.00 0.00 3.86
4461 4513 7.147355 GGAATAGGAAAAGTATAGGGTTGGAGT 60.147 40.741 0.00 0.00 0.00 3.85
4462 4514 5.437191 AGGAAAAGTATAGGGTTGGAGTG 57.563 43.478 0.00 0.00 0.00 3.51
4463 4515 4.227527 AGGAAAAGTATAGGGTTGGAGTGG 59.772 45.833 0.00 0.00 0.00 4.00
4464 4516 3.646736 AAAGTATAGGGTTGGAGTGGC 57.353 47.619 0.00 0.00 0.00 5.01
4465 4517 2.263895 AGTATAGGGTTGGAGTGGCA 57.736 50.000 0.00 0.00 0.00 4.92
4466 4518 2.776665 AGTATAGGGTTGGAGTGGCAT 58.223 47.619 0.00 0.00 0.00 4.40
4467 4519 2.439507 AGTATAGGGTTGGAGTGGCATG 59.560 50.000 0.00 0.00 0.00 4.06
4468 4520 0.106519 ATAGGGTTGGAGTGGCATGC 60.107 55.000 9.90 9.90 0.00 4.06
4469 4521 1.496444 TAGGGTTGGAGTGGCATGCA 61.496 55.000 21.36 2.54 0.00 3.96
4470 4522 2.639327 GGGTTGGAGTGGCATGCAC 61.639 63.158 21.36 15.34 0.00 4.57
4471 4523 1.902918 GGTTGGAGTGGCATGCACA 60.903 57.895 21.36 12.37 0.00 4.57
4472 4524 1.286880 GTTGGAGTGGCATGCACAC 59.713 57.895 23.70 23.70 39.10 3.82
4473 4525 1.152798 TTGGAGTGGCATGCACACA 60.153 52.632 29.08 19.93 41.21 3.72
4474 4526 0.540133 TTGGAGTGGCATGCACACAT 60.540 50.000 29.08 19.13 41.21 3.21
4487 4539 4.219264 TGCACACATGAATCCTACATGA 57.781 40.909 13.54 0.00 45.22 3.07
4488 4540 4.784177 TGCACACATGAATCCTACATGAT 58.216 39.130 13.54 0.69 45.22 2.45
4489 4541 5.195185 TGCACACATGAATCCTACATGATT 58.805 37.500 13.54 0.00 45.22 2.57
4490 4542 6.355747 TGCACACATGAATCCTACATGATTA 58.644 36.000 13.54 0.00 45.22 1.75
4491 4543 6.484308 TGCACACATGAATCCTACATGATTAG 59.516 38.462 13.54 0.00 45.22 1.73
4492 4544 6.567321 GCACACATGAATCCTACATGATTAGC 60.567 42.308 13.54 8.48 45.22 3.09
4493 4545 6.484308 CACACATGAATCCTACATGATTAGCA 59.516 38.462 13.54 0.00 45.22 3.49
4494 4546 7.174426 CACACATGAATCCTACATGATTAGCAT 59.826 37.037 13.54 0.00 45.22 3.79
4495 4547 8.377799 ACACATGAATCCTACATGATTAGCATA 58.622 33.333 13.54 0.00 45.22 3.14
4496 4548 8.880750 CACATGAATCCTACATGATTAGCATAG 58.119 37.037 13.54 0.00 45.22 2.23
4497 4549 8.819845 ACATGAATCCTACATGATTAGCATAGA 58.180 33.333 13.54 0.00 45.22 1.98
4498 4550 9.315525 CATGAATCCTACATGATTAGCATAGAG 57.684 37.037 0.00 0.00 45.22 2.43
4499 4551 8.427902 TGAATCCTACATGATTAGCATAGAGT 57.572 34.615 0.00 0.00 35.15 3.24
4500 4552 8.309656 TGAATCCTACATGATTAGCATAGAGTG 58.690 37.037 0.00 0.00 35.15 3.51
4501 4553 7.789202 ATCCTACATGATTAGCATAGAGTGT 57.211 36.000 0.00 0.00 34.82 3.55
4502 4554 7.603180 TCCTACATGATTAGCATAGAGTGTT 57.397 36.000 0.00 0.00 34.82 3.32
4503 4555 8.023021 TCCTACATGATTAGCATAGAGTGTTT 57.977 34.615 0.00 0.00 34.82 2.83
4504 4556 7.928167 TCCTACATGATTAGCATAGAGTGTTTG 59.072 37.037 0.00 0.00 34.82 2.93
4505 4557 7.928167 CCTACATGATTAGCATAGAGTGTTTGA 59.072 37.037 0.00 0.00 34.82 2.69
4506 4558 9.486497 CTACATGATTAGCATAGAGTGTTTGAT 57.514 33.333 0.00 0.00 34.82 2.57
4507 4559 8.151141 ACATGATTAGCATAGAGTGTTTGATG 57.849 34.615 0.00 0.00 34.82 3.07
4508 4560 7.228108 ACATGATTAGCATAGAGTGTTTGATGG 59.772 37.037 0.00 0.00 34.82 3.51
4509 4561 5.528690 TGATTAGCATAGAGTGTTTGATGGC 59.471 40.000 0.00 0.00 0.00 4.40
4510 4562 3.354948 AGCATAGAGTGTTTGATGGCA 57.645 42.857 0.00 0.00 0.00 4.92
4511 4563 3.012518 AGCATAGAGTGTTTGATGGCAC 58.987 45.455 0.00 0.00 35.98 5.01
4525 4577 0.752054 TGGCACAGGAAAAGCAAAGG 59.248 50.000 0.00 0.00 0.00 3.11
4526 4578 1.039856 GGCACAGGAAAAGCAAAGGA 58.960 50.000 0.00 0.00 0.00 3.36
4527 4579 1.412343 GGCACAGGAAAAGCAAAGGAA 59.588 47.619 0.00 0.00 0.00 3.36
4528 4580 2.037641 GGCACAGGAAAAGCAAAGGAAT 59.962 45.455 0.00 0.00 0.00 3.01
4529 4581 3.494924 GGCACAGGAAAAGCAAAGGAATT 60.495 43.478 0.00 0.00 0.00 2.17
4530 4582 3.495753 GCACAGGAAAAGCAAAGGAATTG 59.504 43.478 0.00 0.00 42.21 2.32
4531 4583 4.696455 CACAGGAAAAGCAAAGGAATTGT 58.304 39.130 0.00 0.00 41.32 2.71
4532 4584 5.738783 GCACAGGAAAAGCAAAGGAATTGTA 60.739 40.000 0.00 0.00 41.32 2.41
4533 4585 6.279882 CACAGGAAAAGCAAAGGAATTGTAA 58.720 36.000 0.00 0.00 41.32 2.41
4534 4586 6.760770 CACAGGAAAAGCAAAGGAATTGTAAA 59.239 34.615 0.00 0.00 41.32 2.01
4535 4587 7.279758 CACAGGAAAAGCAAAGGAATTGTAAAA 59.720 33.333 0.00 0.00 41.32 1.52
4536 4588 7.826744 ACAGGAAAAGCAAAGGAATTGTAAAAA 59.173 29.630 0.00 0.00 41.32 1.94
4537 4589 8.337532 CAGGAAAAGCAAAGGAATTGTAAAAAG 58.662 33.333 0.00 0.00 41.32 2.27
4538 4590 8.264347 AGGAAAAGCAAAGGAATTGTAAAAAGA 58.736 29.630 0.00 0.00 41.32 2.52
4539 4591 8.551205 GGAAAAGCAAAGGAATTGTAAAAAGAG 58.449 33.333 0.00 0.00 41.32 2.85
4540 4592 8.437360 AAAAGCAAAGGAATTGTAAAAAGAGG 57.563 30.769 0.00 0.00 41.32 3.69
4541 4593 6.731292 AGCAAAGGAATTGTAAAAAGAGGT 57.269 33.333 0.00 0.00 41.32 3.85
4542 4594 7.124573 AGCAAAGGAATTGTAAAAAGAGGTT 57.875 32.000 0.00 0.00 41.32 3.50
4543 4595 6.986231 AGCAAAGGAATTGTAAAAAGAGGTTG 59.014 34.615 0.00 0.00 41.32 3.77
4544 4596 6.202762 GCAAAGGAATTGTAAAAAGAGGTTGG 59.797 38.462 0.00 0.00 41.32 3.77
4545 4597 7.496747 CAAAGGAATTGTAAAAAGAGGTTGGA 58.503 34.615 0.00 0.00 34.16 3.53
4546 4598 6.901081 AGGAATTGTAAAAAGAGGTTGGAG 57.099 37.500 0.00 0.00 0.00 3.86
4547 4599 6.373759 AGGAATTGTAAAAAGAGGTTGGAGT 58.626 36.000 0.00 0.00 0.00 3.85
4548 4600 6.265422 AGGAATTGTAAAAAGAGGTTGGAGTG 59.735 38.462 0.00 0.00 0.00 3.51
4549 4601 6.405278 AATTGTAAAAAGAGGTTGGAGTGG 57.595 37.500 0.00 0.00 0.00 4.00
4550 4602 4.781775 TGTAAAAAGAGGTTGGAGTGGA 57.218 40.909 0.00 0.00 0.00 4.02
4551 4603 5.319043 TGTAAAAAGAGGTTGGAGTGGAT 57.681 39.130 0.00 0.00 0.00 3.41
4552 4604 5.070001 TGTAAAAAGAGGTTGGAGTGGATG 58.930 41.667 0.00 0.00 0.00 3.51
4553 4605 3.884037 AAAAGAGGTTGGAGTGGATGT 57.116 42.857 0.00 0.00 0.00 3.06
4554 4606 3.884037 AAAGAGGTTGGAGTGGATGTT 57.116 42.857 0.00 0.00 0.00 2.71
4555 4607 4.993705 AAAGAGGTTGGAGTGGATGTTA 57.006 40.909 0.00 0.00 0.00 2.41
4556 4608 4.559862 AAGAGGTTGGAGTGGATGTTAG 57.440 45.455 0.00 0.00 0.00 2.34
4557 4609 3.791320 AGAGGTTGGAGTGGATGTTAGA 58.209 45.455 0.00 0.00 0.00 2.10
4558 4610 4.366267 AGAGGTTGGAGTGGATGTTAGAT 58.634 43.478 0.00 0.00 0.00 1.98
4559 4611 4.785376 AGAGGTTGGAGTGGATGTTAGATT 59.215 41.667 0.00 0.00 0.00 2.40
4560 4612 5.251700 AGAGGTTGGAGTGGATGTTAGATTT 59.748 40.000 0.00 0.00 0.00 2.17
4561 4613 5.501156 AGGTTGGAGTGGATGTTAGATTTC 58.499 41.667 0.00 0.00 0.00 2.17
4562 4614 4.640647 GGTTGGAGTGGATGTTAGATTTCC 59.359 45.833 0.00 0.00 0.00 3.13
4563 4615 5.501156 GTTGGAGTGGATGTTAGATTTCCT 58.499 41.667 0.00 0.00 0.00 3.36
4564 4616 6.352737 GGTTGGAGTGGATGTTAGATTTCCTA 60.353 42.308 0.00 0.00 0.00 2.94
4565 4617 7.283329 GTTGGAGTGGATGTTAGATTTCCTAT 58.717 38.462 0.00 0.00 0.00 2.57
4566 4618 6.830912 TGGAGTGGATGTTAGATTTCCTATG 58.169 40.000 0.00 0.00 0.00 2.23
4567 4619 6.615316 TGGAGTGGATGTTAGATTTCCTATGA 59.385 38.462 0.00 0.00 0.00 2.15
4568 4620 7.127186 TGGAGTGGATGTTAGATTTCCTATGAA 59.873 37.037 0.00 0.00 0.00 2.57
4569 4621 7.993183 GGAGTGGATGTTAGATTTCCTATGAAA 59.007 37.037 0.00 0.00 44.22 2.69
4631 4683 7.880105 GGATCCAATCCTATGAATCAAAAGAC 58.120 38.462 6.95 0.00 46.19 3.01
4632 4684 7.040132 GGATCCAATCCTATGAATCAAAAGACC 60.040 40.741 6.95 0.00 46.19 3.85
4633 4685 6.730447 TCCAATCCTATGAATCAAAAGACCA 58.270 36.000 0.00 0.00 0.00 4.02
4634 4686 7.181361 TCCAATCCTATGAATCAAAAGACCAA 58.819 34.615 0.00 0.00 0.00 3.67
4635 4687 7.122650 TCCAATCCTATGAATCAAAAGACCAAC 59.877 37.037 0.00 0.00 0.00 3.77
4636 4688 7.093814 CCAATCCTATGAATCAAAAGACCAACA 60.094 37.037 0.00 0.00 0.00 3.33
4637 4689 8.472413 CAATCCTATGAATCAAAAGACCAACAT 58.528 33.333 0.00 0.00 0.00 2.71
4638 4690 9.699410 AATCCTATGAATCAAAAGACCAACATA 57.301 29.630 0.00 0.00 0.00 2.29
4639 4691 8.737168 TCCTATGAATCAAAAGACCAACATAG 57.263 34.615 0.00 0.00 37.06 2.23
4640 4692 8.548025 TCCTATGAATCAAAAGACCAACATAGA 58.452 33.333 0.00 0.00 38.53 1.98
4641 4693 9.177608 CCTATGAATCAAAAGACCAACATAGAA 57.822 33.333 0.00 0.00 38.53 2.10
4643 4695 8.868522 ATGAATCAAAAGACCAACATAGAAGA 57.131 30.769 0.00 0.00 0.00 2.87
4644 4696 8.690203 TGAATCAAAAGACCAACATAGAAGAA 57.310 30.769 0.00 0.00 0.00 2.52
4645 4697 9.130661 TGAATCAAAAGACCAACATAGAAGAAA 57.869 29.630 0.00 0.00 0.00 2.52
4649 4701 9.354673 TCAAAAGACCAACATAGAAGAAATTCT 57.645 29.630 0.00 0.00 35.17 2.40
4650 4702 9.971922 CAAAAGACCAACATAGAAGAAATTCTT 57.028 29.630 8.12 8.12 39.87 2.52
4654 4706 9.454859 AGACCAACATAGAAGAAATTCTTAAGG 57.545 33.333 8.38 4.67 36.73 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.416738 GGTGTCCTGCCTGGCTCC 62.417 72.222 21.03 8.71 35.26 4.70
186 207 1.453928 GAGGGGCGGAATGGGAAAG 60.454 63.158 0.00 0.00 0.00 2.62
187 208 2.680965 GAGGGGCGGAATGGGAAA 59.319 61.111 0.00 0.00 0.00 3.13
199 220 1.093496 GTATGAAAACGGGCGAGGGG 61.093 60.000 0.00 0.00 0.00 4.79
200 221 0.391927 TGTATGAAAACGGGCGAGGG 60.392 55.000 0.00 0.00 0.00 4.30
232 253 2.520260 GGATGGGGATGCAGGTGC 60.520 66.667 0.00 0.00 42.50 5.01
233 254 2.196776 GGGATGGGGATGCAGGTG 59.803 66.667 0.00 0.00 0.00 4.00
234 255 3.105928 GGGGATGGGGATGCAGGT 61.106 66.667 0.00 0.00 0.00 4.00
235 256 3.907130 GGGGGATGGGGATGCAGG 61.907 72.222 0.00 0.00 0.00 4.85
236 257 4.275508 CGGGGGATGGGGATGCAG 62.276 72.222 0.00 0.00 0.00 4.41
259 280 1.693083 GGGGGAGGGGTAAGAGAAGAG 60.693 61.905 0.00 0.00 0.00 2.85
260 281 0.342313 GGGGGAGGGGTAAGAGAAGA 59.658 60.000 0.00 0.00 0.00 2.87
261 282 0.044244 TGGGGGAGGGGTAAGAGAAG 59.956 60.000 0.00 0.00 0.00 2.85
262 283 0.499147 TTGGGGGAGGGGTAAGAGAA 59.501 55.000 0.00 0.00 0.00 2.87
263 284 0.728843 ATTGGGGGAGGGGTAAGAGA 59.271 55.000 0.00 0.00 0.00 3.10
334 355 2.603473 CGGTGAGGTGGTGGAGGA 60.603 66.667 0.00 0.00 0.00 3.71
335 356 3.706373 CCGGTGAGGTGGTGGAGG 61.706 72.222 0.00 0.00 34.51 4.30
336 357 2.172483 CTTCCGGTGAGGTGGTGGAG 62.172 65.000 0.00 0.00 41.99 3.86
337 358 2.122769 TTCCGGTGAGGTGGTGGA 60.123 61.111 0.00 0.00 41.99 4.02
338 359 2.347490 CTTCCGGTGAGGTGGTGG 59.653 66.667 0.00 0.00 41.99 4.61
339 360 2.347490 CCTTCCGGTGAGGTGGTG 59.653 66.667 15.72 0.00 41.99 4.17
340 361 3.637273 GCCTTCCGGTGAGGTGGT 61.637 66.667 22.01 0.00 41.99 4.16
341 362 4.410400 GGCCTTCCGGTGAGGTGG 62.410 72.222 22.01 9.62 41.99 4.61
379 400 4.570874 GGCAGGGCGAGGGATTCC 62.571 72.222 0.00 0.00 0.00 3.01
562 583 1.724582 GGCCAATCGAACCAATCCCG 61.725 60.000 0.00 0.00 0.00 5.14
680 703 3.751246 CGAGGTACCACGCCCGAA 61.751 66.667 18.79 0.00 0.00 4.30
708 731 2.216488 CGTGATCTGCTAATTCGAACCG 59.784 50.000 0.00 0.00 0.00 4.44
737 760 2.288640 ACAACTAACGACAGCAGGTACC 60.289 50.000 2.73 2.73 0.00 3.34
827 863 9.542462 AACAGCGAATACATAGTAATACACATT 57.458 29.630 0.00 0.00 0.00 2.71
836 872 8.757789 CGGAAAAATAACAGCGAATACATAGTA 58.242 33.333 0.00 0.00 0.00 1.82
837 873 7.279313 ACGGAAAAATAACAGCGAATACATAGT 59.721 33.333 0.00 0.00 0.00 2.12
847 883 7.998141 TGAAAAATAACGGAAAAATAACAGCG 58.002 30.769 0.00 0.00 0.00 5.18
870 906 5.869344 CACTTGGAATTAGACGTCAGATTGA 59.131 40.000 19.50 3.71 0.00 2.57
941 977 3.564225 ACGGTGAACAAAGATTCAGAACC 59.436 43.478 0.00 0.00 39.25 3.62
1005 1041 0.249868 CTCTCCTCACAACAACGCCA 60.250 55.000 0.00 0.00 0.00 5.69
1088 1124 5.220228 CGAAATCGTTTCCTTACTAGTGCAG 60.220 44.000 5.39 1.09 36.30 4.41
1204 1240 5.587844 ACAGACATCAGAATCAATTACCTGC 59.412 40.000 0.00 0.00 0.00 4.85
1212 1248 4.143543 TGCCAAACAGACATCAGAATCAA 58.856 39.130 0.00 0.00 0.00 2.57
1223 1259 1.866601 GTGCCAAATTGCCAAACAGAC 59.133 47.619 0.00 0.00 0.00 3.51
1331 1367 9.625747 TTGCTGGATGTTAATTGAACTGATATA 57.374 29.630 0.00 0.00 38.98 0.86
1472 1510 4.946772 TGTTGTGGTCTCAATTTTCTGTCA 59.053 37.500 0.00 0.00 0.00 3.58
1544 1582 9.167311 ACTGAAGCTTATCATTCTAAAATCGTT 57.833 29.630 0.00 0.00 0.00 3.85
1635 1674 7.210873 AGGACAGAATATCGTGGAAGTATTTC 58.789 38.462 0.00 0.00 0.00 2.17
1654 1693 6.558771 TTACACACATGATTTGAAGGACAG 57.441 37.500 0.00 0.00 0.00 3.51
1676 1715 4.020485 AGGCAGAACACGTCTAGGTTATTT 60.020 41.667 0.00 0.00 33.56 1.40
1688 1727 2.688507 AGATTGTACAGGCAGAACACG 58.311 47.619 0.00 0.00 0.00 4.49
1697 1736 8.226819 TGTTCTCTACAGATAGATTGTACAGG 57.773 38.462 0.00 0.00 36.81 4.00
1718 1757 8.782533 ATCTTCAATCGTGTTAGTTTTTGTTC 57.217 30.769 0.00 0.00 0.00 3.18
1726 1765 8.818057 GCTAATGTAATCTTCAATCGTGTTAGT 58.182 33.333 0.00 0.00 0.00 2.24
1728 1767 7.490079 ACGCTAATGTAATCTTCAATCGTGTTA 59.510 33.333 0.00 0.00 0.00 2.41
1744 1783 8.173542 TCATTTATCTGACCTACGCTAATGTA 57.826 34.615 0.00 0.00 0.00 2.29
1752 1791 6.851222 ATTGCTTCATTTATCTGACCTACG 57.149 37.500 0.00 0.00 0.00 3.51
1786 1825 6.723298 AAAAGGAACATCATGGTGTACAAA 57.277 33.333 13.06 0.00 0.00 2.83
1851 1890 9.912634 TTTAGAAAGGTAAGCAAAAATGAGATG 57.087 29.630 0.00 0.00 0.00 2.90
1995 2034 5.079643 GGGTCCATAATCCAAGCACAATAT 58.920 41.667 0.00 0.00 0.00 1.28
2022 2061 2.637872 CTGAAACTCACCTCCCCACTTA 59.362 50.000 0.00 0.00 0.00 2.24
2100 2139 7.781056 ACCAGTCTTCAAACAAAATTGTACAT 58.219 30.769 0.00 0.00 41.31 2.29
2172 2211 5.878406 TTATGTTTTTCTCTTGGGGCAAA 57.122 34.783 0.00 0.00 0.00 3.68
2241 2280 3.742433 AGAGATGCCTAACGAGGAATG 57.258 47.619 0.00 0.00 41.90 2.67
2373 2412 7.424803 CACCACAAGAACAAGAACATATGAAA 58.575 34.615 10.38 0.00 0.00 2.69
2501 2542 5.309323 TCTAATGAAAACCGCCATCAAAG 57.691 39.130 0.00 0.00 0.00 2.77
2520 2561 1.620323 AGCAGCACACACTGACATCTA 59.380 47.619 0.00 0.00 40.25 1.98
2738 2779 3.451178 TGTAGTTCTTCCCCTGTATCAGC 59.549 47.826 0.00 0.00 0.00 4.26
2832 2873 2.930682 TGTGTCGTTTTCAATCGTGTGA 59.069 40.909 0.00 0.00 0.00 3.58
2836 2877 3.296628 GCATTGTGTCGTTTTCAATCGT 58.703 40.909 0.00 0.00 30.74 3.73
2837 2878 2.335320 CGCATTGTGTCGTTTTCAATCG 59.665 45.455 0.00 0.00 30.74 3.34
2838 2879 2.656422 CCGCATTGTGTCGTTTTCAATC 59.344 45.455 0.00 0.00 30.74 2.67
2901 2942 2.581354 CCCCTTCAGCTGGAGACG 59.419 66.667 24.46 12.46 0.00 4.18
2965 3006 3.274288 GCCTTCTACTGGACCAATTGAG 58.726 50.000 7.12 0.00 0.00 3.02
2968 3009 2.279173 AGGCCTTCTACTGGACCAATT 58.721 47.619 0.00 0.00 31.51 2.32
2995 3036 2.504367 TGTGCCTCCTTTGCTAAGTTC 58.496 47.619 7.14 0.00 0.00 3.01
3004 3045 6.515512 AATACATACCTATGTGCCTCCTTT 57.484 37.500 8.02 0.00 45.77 3.11
3126 3167 3.890756 TGTTCAGTTCAATTGCTGACCAT 59.109 39.130 13.40 0.00 40.91 3.55
3277 3325 3.865446 TCGTGATCATGCTGACAGATTT 58.135 40.909 10.24 0.00 0.00 2.17
3319 3367 3.625853 TCTGACAATCTCGAGACCAGAT 58.374 45.455 19.30 0.00 31.51 2.90
3542 3591 4.946160 AATAGGTTTCCCCACAGATTGA 57.054 40.909 0.00 0.00 34.66 2.57
3575 3624 2.427453 TGCAACGTTTAAGGGCTTTCAA 59.573 40.909 0.00 0.00 0.00 2.69
3894 3946 1.070786 TGGAGCCACTTGAACGACC 59.929 57.895 0.00 0.00 0.00 4.79
3919 3971 4.045462 ACCCTATAAACCAAAGAAGGCCTT 59.955 41.667 20.65 20.65 36.47 4.35
3920 3972 3.596500 ACCCTATAAACCAAAGAAGGCCT 59.403 43.478 0.00 0.00 0.00 5.19
3921 3973 3.977312 ACCCTATAAACCAAAGAAGGCC 58.023 45.455 0.00 0.00 0.00 5.19
3922 3974 5.104235 TCCTACCCTATAAACCAAAGAAGGC 60.104 44.000 0.00 0.00 0.00 4.35
3923 3975 6.570654 TCCTACCCTATAAACCAAAGAAGG 57.429 41.667 0.00 0.00 0.00 3.46
3926 3978 9.455144 TGATATTCCTACCCTATAAACCAAAGA 57.545 33.333 0.00 0.00 0.00 2.52
3930 3982 9.502035 CCTATGATATTCCTACCCTATAAACCA 57.498 37.037 0.00 0.00 0.00 3.67
3931 3983 9.725206 TCCTATGATATTCCTACCCTATAAACC 57.275 37.037 0.00 0.00 0.00 3.27
3959 4011 9.174166 GCCACCTCACTTTCTATAATTTTTCTA 57.826 33.333 0.00 0.00 0.00 2.10
3960 4012 7.669722 TGCCACCTCACTTTCTATAATTTTTCT 59.330 33.333 0.00 0.00 0.00 2.52
3961 4013 7.826690 TGCCACCTCACTTTCTATAATTTTTC 58.173 34.615 0.00 0.00 0.00 2.29
3962 4014 7.775053 TGCCACCTCACTTTCTATAATTTTT 57.225 32.000 0.00 0.00 0.00 1.94
3963 4015 7.631377 GCATGCCACCTCACTTTCTATAATTTT 60.631 37.037 6.36 0.00 0.00 1.82
3964 4016 6.183360 GCATGCCACCTCACTTTCTATAATTT 60.183 38.462 6.36 0.00 0.00 1.82
3965 4017 5.300286 GCATGCCACCTCACTTTCTATAATT 59.700 40.000 6.36 0.00 0.00 1.40
3966 4018 4.823989 GCATGCCACCTCACTTTCTATAAT 59.176 41.667 6.36 0.00 0.00 1.28
3967 4019 4.199310 GCATGCCACCTCACTTTCTATAA 58.801 43.478 6.36 0.00 0.00 0.98
3968 4020 3.199727 TGCATGCCACCTCACTTTCTATA 59.800 43.478 16.68 0.00 0.00 1.31
3969 4021 2.025981 TGCATGCCACCTCACTTTCTAT 60.026 45.455 16.68 0.00 0.00 1.98
3970 4022 1.350684 TGCATGCCACCTCACTTTCTA 59.649 47.619 16.68 0.00 0.00 2.10
3971 4023 0.111061 TGCATGCCACCTCACTTTCT 59.889 50.000 16.68 0.00 0.00 2.52
3972 4024 1.133790 GATGCATGCCACCTCACTTTC 59.866 52.381 16.68 0.00 0.00 2.62
3973 4025 1.180029 GATGCATGCCACCTCACTTT 58.820 50.000 16.68 0.00 0.00 2.66
3974 4026 0.330604 AGATGCATGCCACCTCACTT 59.669 50.000 16.68 0.00 0.00 3.16
3975 4027 0.107312 GAGATGCATGCCACCTCACT 60.107 55.000 16.68 3.79 0.00 3.41
3976 4028 0.393402 TGAGATGCATGCCACCTCAC 60.393 55.000 21.97 11.34 0.00 3.51
3977 4029 0.393402 GTGAGATGCATGCCACCTCA 60.393 55.000 21.97 21.97 0.00 3.86
3978 4030 0.107312 AGTGAGATGCATGCCACCTC 60.107 55.000 16.68 17.80 0.00 3.85
3979 4031 0.330604 AAGTGAGATGCATGCCACCT 59.669 50.000 16.68 9.29 0.00 4.00
3980 4032 0.737219 GAAGTGAGATGCATGCCACC 59.263 55.000 16.68 4.00 0.00 4.61
3981 4033 0.737219 GGAAGTGAGATGCATGCCAC 59.263 55.000 16.68 15.50 0.00 5.01
3982 4034 0.622136 AGGAAGTGAGATGCATGCCA 59.378 50.000 16.68 2.24 0.00 4.92
3983 4035 2.627515 TAGGAAGTGAGATGCATGCC 57.372 50.000 16.68 0.00 0.00 4.40
3984 4036 4.020751 TCCTATAGGAAGTGAGATGCATGC 60.021 45.833 19.59 11.82 42.18 4.06
3985 4037 5.735285 TCCTATAGGAAGTGAGATGCATG 57.265 43.478 19.59 0.00 42.18 4.06
3998 4050 7.619698 TCAAGTGACATCTCTTTTCCTATAGGA 59.380 37.037 18.00 18.00 43.73 2.94
3999 4051 7.786030 TCAAGTGACATCTCTTTTCCTATAGG 58.214 38.462 13.07 13.07 0.00 2.57
4000 4052 9.829507 AATCAAGTGACATCTCTTTTCCTATAG 57.170 33.333 0.00 0.00 0.00 1.31
4001 4053 9.823647 GAATCAAGTGACATCTCTTTTCCTATA 57.176 33.333 0.00 0.00 0.00 1.31
4002 4054 8.324306 TGAATCAAGTGACATCTCTTTTCCTAT 58.676 33.333 0.00 0.00 0.00 2.57
4003 4055 7.679783 TGAATCAAGTGACATCTCTTTTCCTA 58.320 34.615 0.00 0.00 0.00 2.94
4004 4056 6.537355 TGAATCAAGTGACATCTCTTTTCCT 58.463 36.000 0.00 0.00 0.00 3.36
4005 4057 6.808008 TGAATCAAGTGACATCTCTTTTCC 57.192 37.500 0.00 0.00 0.00 3.13
4006 4058 8.113062 CGTATGAATCAAGTGACATCTCTTTTC 58.887 37.037 0.00 0.00 0.00 2.29
4007 4059 7.819415 TCGTATGAATCAAGTGACATCTCTTTT 59.181 33.333 0.00 0.00 0.00 2.27
4008 4060 7.323420 TCGTATGAATCAAGTGACATCTCTTT 58.677 34.615 0.00 0.00 0.00 2.52
4009 4061 6.867550 TCGTATGAATCAAGTGACATCTCTT 58.132 36.000 0.00 0.00 0.00 2.85
4010 4062 6.456795 TCGTATGAATCAAGTGACATCTCT 57.543 37.500 0.00 0.00 0.00 3.10
4011 4063 7.540400 CCTATCGTATGAATCAAGTGACATCTC 59.460 40.741 0.00 0.00 0.00 2.75
4012 4064 7.231519 TCCTATCGTATGAATCAAGTGACATCT 59.768 37.037 0.00 0.00 0.00 2.90
4013 4065 7.371159 TCCTATCGTATGAATCAAGTGACATC 58.629 38.462 0.00 0.00 0.00 3.06
4014 4066 7.290110 TCCTATCGTATGAATCAAGTGACAT 57.710 36.000 0.00 0.00 0.00 3.06
4015 4067 6.709018 TCCTATCGTATGAATCAAGTGACA 57.291 37.500 0.00 0.00 0.00 3.58
4016 4068 8.594881 AAATCCTATCGTATGAATCAAGTGAC 57.405 34.615 0.00 0.00 0.00 3.67
4017 4069 9.613428 AAAAATCCTATCGTATGAATCAAGTGA 57.387 29.630 0.00 0.00 0.00 3.41
4041 4093 5.867903 TCAAAGAAGGCCTCAATGAAAAA 57.132 34.783 5.23 0.00 0.00 1.94
4042 4094 6.423776 AATCAAAGAAGGCCTCAATGAAAA 57.576 33.333 5.23 0.00 0.00 2.29
4043 4095 6.423776 AAATCAAAGAAGGCCTCAATGAAA 57.576 33.333 5.23 0.00 0.00 2.69
4044 4096 7.722949 ATAAATCAAAGAAGGCCTCAATGAA 57.277 32.000 5.23 0.00 0.00 2.57
4045 4097 8.821686 TTATAAATCAAAGAAGGCCTCAATGA 57.178 30.769 5.23 9.41 0.00 2.57
4046 4098 8.139989 CCTTATAAATCAAAGAAGGCCTCAATG 58.860 37.037 5.23 3.32 30.89 2.82
4047 4099 7.841222 ACCTTATAAATCAAAGAAGGCCTCAAT 59.159 33.333 5.23 0.00 40.34 2.57
4048 4100 7.182060 ACCTTATAAATCAAAGAAGGCCTCAA 58.818 34.615 5.23 0.00 40.34 3.02
4049 4101 6.731467 ACCTTATAAATCAAAGAAGGCCTCA 58.269 36.000 5.23 0.00 40.34 3.86
4050 4102 7.445707 CCTACCTTATAAATCAAAGAAGGCCTC 59.554 40.741 5.23 0.00 40.34 4.70
4051 4103 7.128883 TCCTACCTTATAAATCAAAGAAGGCCT 59.871 37.037 0.00 0.00 40.34 5.19
4052 4104 7.287810 TCCTACCTTATAAATCAAAGAAGGCC 58.712 38.462 0.00 0.00 40.34 5.19
4053 4105 8.747538 TTCCTACCTTATAAATCAAAGAAGGC 57.252 34.615 0.00 0.00 40.34 4.35
4084 4136 9.447279 TCACTTCCTATGATTTTCCTATTCCTA 57.553 33.333 0.00 0.00 0.00 2.94
4085 4137 8.337118 TCACTTCCTATGATTTTCCTATTCCT 57.663 34.615 0.00 0.00 0.00 3.36
4086 4138 7.663493 CCTCACTTCCTATGATTTTCCTATTCC 59.337 40.741 0.00 0.00 0.00 3.01
4087 4139 8.214364 ACCTCACTTCCTATGATTTTCCTATTC 58.786 37.037 0.00 0.00 0.00 1.75
4088 4140 7.995488 CACCTCACTTCCTATGATTTTCCTATT 59.005 37.037 0.00 0.00 0.00 1.73
4089 4141 7.420680 CCACCTCACTTCCTATGATTTTCCTAT 60.421 40.741 0.00 0.00 0.00 2.57
4090 4142 6.126768 CCACCTCACTTCCTATGATTTTCCTA 60.127 42.308 0.00 0.00 0.00 2.94
4091 4143 5.339530 CCACCTCACTTCCTATGATTTTCCT 60.340 44.000 0.00 0.00 0.00 3.36
4092 4144 4.884164 CCACCTCACTTCCTATGATTTTCC 59.116 45.833 0.00 0.00 0.00 3.13
4093 4145 4.336713 GCCACCTCACTTCCTATGATTTTC 59.663 45.833 0.00 0.00 0.00 2.29
4094 4146 4.263905 TGCCACCTCACTTCCTATGATTTT 60.264 41.667 0.00 0.00 0.00 1.82
4095 4147 3.266772 TGCCACCTCACTTCCTATGATTT 59.733 43.478 0.00 0.00 0.00 2.17
4096 4148 2.846206 TGCCACCTCACTTCCTATGATT 59.154 45.455 0.00 0.00 0.00 2.57
4097 4149 2.481441 TGCCACCTCACTTCCTATGAT 58.519 47.619 0.00 0.00 0.00 2.45
4098 4150 1.951209 TGCCACCTCACTTCCTATGA 58.049 50.000 0.00 0.00 0.00 2.15
4099 4151 2.569059 CATGCCACCTCACTTCCTATG 58.431 52.381 0.00 0.00 0.00 2.23
4100 4152 1.133976 GCATGCCACCTCACTTCCTAT 60.134 52.381 6.36 0.00 0.00 2.57
4101 4153 0.253044 GCATGCCACCTCACTTCCTA 59.747 55.000 6.36 0.00 0.00 2.94
4102 4154 1.001641 GCATGCCACCTCACTTCCT 60.002 57.895 6.36 0.00 0.00 3.36
4103 4155 0.682209 ATGCATGCCACCTCACTTCC 60.682 55.000 16.68 0.00 0.00 3.46
4104 4156 0.737219 GATGCATGCCACCTCACTTC 59.263 55.000 16.68 0.00 0.00 3.01
4105 4157 0.330604 AGATGCATGCCACCTCACTT 59.669 50.000 16.68 0.00 0.00 3.16
4106 4158 0.107312 GAGATGCATGCCACCTCACT 60.107 55.000 16.68 3.79 0.00 3.41
4107 4159 0.393402 TGAGATGCATGCCACCTCAC 60.393 55.000 21.97 11.34 0.00 3.51
4108 4160 0.393402 GTGAGATGCATGCCACCTCA 60.393 55.000 21.97 21.97 0.00 3.86
4109 4161 0.107312 AGTGAGATGCATGCCACCTC 60.107 55.000 16.68 17.80 0.00 3.85
4110 4162 0.330604 AAGTGAGATGCATGCCACCT 59.669 50.000 16.68 9.29 0.00 4.00
4111 4163 0.737219 GAAGTGAGATGCATGCCACC 59.263 55.000 16.68 4.00 0.00 4.61
4112 4164 0.737219 GGAAGTGAGATGCATGCCAC 59.263 55.000 16.68 15.50 0.00 5.01
4113 4165 0.622136 AGGAAGTGAGATGCATGCCA 59.378 50.000 16.68 2.24 0.00 4.92
4114 4166 2.627515 TAGGAAGTGAGATGCATGCC 57.372 50.000 16.68 0.00 0.00 4.40
4115 4167 4.252073 CCTATAGGAAGTGAGATGCATGC 58.748 47.826 14.11 11.82 37.39 4.06
4116 4168 4.529769 TCCCTATAGGAAGTGAGATGCATG 59.470 45.833 21.07 0.00 43.78 4.06
4117 4169 4.756564 TCCCTATAGGAAGTGAGATGCAT 58.243 43.478 21.07 0.00 43.78 3.96
4118 4170 4.199002 TCCCTATAGGAAGTGAGATGCA 57.801 45.455 21.07 0.00 43.78 3.96
4129 4181 6.031964 AGTGACATCTCTTTCCCTATAGGA 57.968 41.667 21.07 3.60 45.68 2.94
4130 4182 6.325028 TCAAGTGACATCTCTTTCCCTATAGG 59.675 42.308 12.27 12.27 0.00 2.57
4131 4183 7.353414 TCAAGTGACATCTCTTTCCCTATAG 57.647 40.000 0.00 0.00 0.00 1.31
4132 4184 7.921041 ATCAAGTGACATCTCTTTCCCTATA 57.079 36.000 0.00 0.00 0.00 1.31
4133 4185 6.821616 ATCAAGTGACATCTCTTTCCCTAT 57.178 37.500 0.00 0.00 0.00 2.57
4134 4186 6.213397 TGAATCAAGTGACATCTCTTTCCCTA 59.787 38.462 0.00 0.00 0.00 3.53
4135 4187 5.013495 TGAATCAAGTGACATCTCTTTCCCT 59.987 40.000 0.00 0.00 0.00 4.20
4136 4188 5.248640 TGAATCAAGTGACATCTCTTTCCC 58.751 41.667 0.00 0.00 0.00 3.97
4137 4189 6.128063 CCTTGAATCAAGTGACATCTCTTTCC 60.128 42.308 20.18 0.00 39.58 3.13
4138 4190 6.652481 TCCTTGAATCAAGTGACATCTCTTTC 59.348 38.462 20.18 0.00 39.58 2.62
4139 4191 6.537355 TCCTTGAATCAAGTGACATCTCTTT 58.463 36.000 20.18 0.00 39.58 2.52
4140 4192 6.119240 TCCTTGAATCAAGTGACATCTCTT 57.881 37.500 20.18 0.00 39.58 2.85
4141 4193 5.752036 TCCTTGAATCAAGTGACATCTCT 57.248 39.130 20.18 0.00 39.58 3.10
4142 4194 6.705381 CCTATCCTTGAATCAAGTGACATCTC 59.295 42.308 20.18 0.00 39.58 2.75
4143 4195 6.385176 TCCTATCCTTGAATCAAGTGACATCT 59.615 38.462 20.18 6.45 39.58 2.90
4144 4196 6.586344 TCCTATCCTTGAATCAAGTGACATC 58.414 40.000 20.18 0.00 39.58 3.06
4145 4197 6.566079 TCCTATCCTTGAATCAAGTGACAT 57.434 37.500 20.18 9.79 39.58 3.06
4146 4198 6.566079 ATCCTATCCTTGAATCAAGTGACA 57.434 37.500 20.18 7.15 39.58 3.58
4147 4199 7.872113 AAATCCTATCCTTGAATCAAGTGAC 57.128 36.000 20.18 0.00 39.58 3.67
4148 4200 8.884124 AAAAATCCTATCCTTGAATCAAGTGA 57.116 30.769 20.18 16.59 39.58 3.41
4196 4248 5.426833 TCCTTGACATTTCAAAGGGGAAAAA 59.573 36.000 0.00 0.00 41.34 1.94
4197 4249 4.965532 TCCTTGACATTTCAAAGGGGAAAA 59.034 37.500 0.00 0.00 41.34 2.29
4198 4250 4.551671 TCCTTGACATTTCAAAGGGGAAA 58.448 39.130 0.00 0.00 41.34 3.13
4199 4251 4.191804 TCCTTGACATTTCAAAGGGGAA 57.808 40.909 0.00 0.00 41.34 3.97
4200 4252 3.893753 TCCTTGACATTTCAAAGGGGA 57.106 42.857 0.00 0.00 41.34 4.81
4201 4253 4.527816 TCAATCCTTGACATTTCAAAGGGG 59.472 41.667 0.00 0.00 41.34 4.79
4202 4254 5.726980 TCAATCCTTGACATTTCAAAGGG 57.273 39.130 0.00 0.00 41.34 3.95
4247 4299 6.183360 GCCCTTTGGTTTGTAGGAATAGATTC 60.183 42.308 0.00 0.00 36.08 2.52
4248 4300 5.656859 GCCCTTTGGTTTGTAGGAATAGATT 59.343 40.000 0.00 0.00 0.00 2.40
4249 4301 5.044105 AGCCCTTTGGTTTGTAGGAATAGAT 60.044 40.000 0.00 0.00 0.00 1.98
4250 4302 4.291249 AGCCCTTTGGTTTGTAGGAATAGA 59.709 41.667 0.00 0.00 0.00 1.98
4251 4303 4.600062 AGCCCTTTGGTTTGTAGGAATAG 58.400 43.478 0.00 0.00 0.00 1.73
4252 4304 4.668138 AGCCCTTTGGTTTGTAGGAATA 57.332 40.909 0.00 0.00 0.00 1.75
4253 4305 3.542969 AGCCCTTTGGTTTGTAGGAAT 57.457 42.857 0.00 0.00 0.00 3.01
4254 4306 3.322191 AAGCCCTTTGGTTTGTAGGAA 57.678 42.857 0.00 0.00 33.24 3.36
4255 4307 3.322191 AAAGCCCTTTGGTTTGTAGGA 57.678 42.857 0.00 0.00 42.81 2.94
4256 4308 6.451064 CTATAAAGCCCTTTGGTTTGTAGG 57.549 41.667 10.76 0.00 45.14 3.18
4257 4309 6.184789 TCCTATAAAGCCCTTTGGTTTGTAG 58.815 40.000 11.34 11.34 46.84 2.74
4258 4310 6.142259 TCCTATAAAGCCCTTTGGTTTGTA 57.858 37.500 3.62 0.00 44.08 2.41
4259 4311 5.005628 TCCTATAAAGCCCTTTGGTTTGT 57.994 39.130 3.62 0.00 44.08 2.83
4260 4312 5.993748 TTCCTATAAAGCCCTTTGGTTTG 57.006 39.130 3.62 0.00 44.08 2.93
4261 4313 7.568128 AAATTCCTATAAAGCCCTTTGGTTT 57.432 32.000 3.62 0.00 46.01 3.27
4262 4314 7.568128 AAAATTCCTATAAAGCCCTTTGGTT 57.432 32.000 3.62 0.00 35.85 3.67
4263 4315 7.311046 GGAAAAATTCCTATAAAGCCCTTTGGT 60.311 37.037 3.62 0.00 46.57 3.67
4264 4316 7.047891 GGAAAAATTCCTATAAAGCCCTTTGG 58.952 38.462 3.62 0.00 46.57 3.28
4282 4334 9.997172 AGAGGATAGGATTTTTGTAGGAAAAAT 57.003 29.630 5.09 5.09 41.11 1.82
4317 4369 8.856103 CCTCTTTTGGTTTAAAGGAATCTTGTA 58.144 33.333 0.00 0.00 34.45 2.41
4318 4370 7.686859 GCCTCTTTTGGTTTAAAGGAATCTTGT 60.687 37.037 0.00 0.00 34.45 3.16
4319 4371 6.646653 GCCTCTTTTGGTTTAAAGGAATCTTG 59.353 38.462 0.00 0.00 34.45 3.02
4320 4372 6.326323 TGCCTCTTTTGGTTTAAAGGAATCTT 59.674 34.615 0.00 0.00 34.45 2.40
4321 4373 5.838521 TGCCTCTTTTGGTTTAAAGGAATCT 59.161 36.000 0.00 0.00 34.45 2.40
4322 4374 6.096673 TGCCTCTTTTGGTTTAAAGGAATC 57.903 37.500 0.00 0.00 34.45 2.52
4323 4375 6.493189 TTGCCTCTTTTGGTTTAAAGGAAT 57.507 33.333 0.00 0.00 34.45 3.01
4324 4376 5.941555 TTGCCTCTTTTGGTTTAAAGGAA 57.058 34.783 0.00 0.00 34.45 3.36
4325 4377 7.007723 TCTATTGCCTCTTTTGGTTTAAAGGA 58.992 34.615 0.00 0.00 36.12 3.36
4326 4378 7.227049 TCTATTGCCTCTTTTGGTTTAAAGG 57.773 36.000 0.00 0.00 36.12 3.11
4327 4379 7.814587 CCTTCTATTGCCTCTTTTGGTTTAAAG 59.185 37.037 0.00 0.00 36.64 1.85
4328 4380 7.507616 TCCTTCTATTGCCTCTTTTGGTTTAAA 59.492 33.333 0.00 0.00 0.00 1.52
4329 4381 7.007723 TCCTTCTATTGCCTCTTTTGGTTTAA 58.992 34.615 0.00 0.00 0.00 1.52
4330 4382 6.548321 TCCTTCTATTGCCTCTTTTGGTTTA 58.452 36.000 0.00 0.00 0.00 2.01
4331 4383 5.393866 TCCTTCTATTGCCTCTTTTGGTTT 58.606 37.500 0.00 0.00 0.00 3.27
4332 4384 4.998051 TCCTTCTATTGCCTCTTTTGGTT 58.002 39.130 0.00 0.00 0.00 3.67
4333 4385 4.657814 TCCTTCTATTGCCTCTTTTGGT 57.342 40.909 0.00 0.00 0.00 3.67
4334 4386 6.535963 AAATCCTTCTATTGCCTCTTTTGG 57.464 37.500 0.00 0.00 0.00 3.28
4335 4387 7.547019 GGAAAAATCCTTCTATTGCCTCTTTTG 59.453 37.037 0.00 0.00 0.00 2.44
4336 4388 7.455953 AGGAAAAATCCTTCTATTGCCTCTTTT 59.544 33.333 0.00 0.00 36.56 2.27
4337 4389 6.956435 AGGAAAAATCCTTCTATTGCCTCTTT 59.044 34.615 0.00 0.00 36.56 2.52
4338 4390 6.497640 AGGAAAAATCCTTCTATTGCCTCTT 58.502 36.000 0.00 0.00 36.56 2.85
4339 4391 6.069147 AGAGGAAAAATCCTTCTATTGCCTCT 60.069 38.462 7.89 7.89 40.86 3.69
4340 4392 6.039159 CAGAGGAAAAATCCTTCTATTGCCTC 59.961 42.308 3.60 3.60 40.86 4.70
4341 4393 5.890419 CAGAGGAAAAATCCTTCTATTGCCT 59.110 40.000 0.00 0.00 40.86 4.75
4342 4394 5.888161 TCAGAGGAAAAATCCTTCTATTGCC 59.112 40.000 0.00 0.00 40.86 4.52
4343 4395 7.396540 TTCAGAGGAAAAATCCTTCTATTGC 57.603 36.000 0.00 0.00 40.86 3.56
4401 4453 1.004745 TCCTGTGAATCAAAGAGGGCC 59.995 52.381 1.15 0.00 0.00 5.80
4402 4454 2.496899 TCCTGTGAATCAAAGAGGGC 57.503 50.000 1.15 0.00 0.00 5.19
4403 4455 5.477984 TGAAAATCCTGTGAATCAAAGAGGG 59.522 40.000 1.15 0.00 0.00 4.30
4404 4456 6.579666 TGAAAATCCTGTGAATCAAAGAGG 57.420 37.500 1.15 0.05 0.00 3.69
4405 4457 8.758715 GTTTTGAAAATCCTGTGAATCAAAGAG 58.241 33.333 1.15 0.00 35.22 2.85
4406 4458 7.434897 CGTTTTGAAAATCCTGTGAATCAAAGA 59.565 33.333 1.15 0.00 35.22 2.52
4407 4459 7.222611 ACGTTTTGAAAATCCTGTGAATCAAAG 59.777 33.333 0.00 0.00 35.22 2.77
4408 4460 7.038659 ACGTTTTGAAAATCCTGTGAATCAAA 58.961 30.769 0.00 0.00 33.53 2.69
4409 4461 6.568869 ACGTTTTGAAAATCCTGTGAATCAA 58.431 32.000 0.00 0.00 0.00 2.57
4410 4462 6.142818 ACGTTTTGAAAATCCTGTGAATCA 57.857 33.333 0.00 0.00 0.00 2.57
4411 4463 6.801862 CCTACGTTTTGAAAATCCTGTGAATC 59.198 38.462 0.00 0.00 0.00 2.52
4412 4464 6.488683 TCCTACGTTTTGAAAATCCTGTGAAT 59.511 34.615 0.00 0.00 0.00 2.57
4413 4465 5.823570 TCCTACGTTTTGAAAATCCTGTGAA 59.176 36.000 0.00 0.00 0.00 3.18
4414 4466 5.369833 TCCTACGTTTTGAAAATCCTGTGA 58.630 37.500 0.00 0.00 0.00 3.58
4415 4467 5.682943 TCCTACGTTTTGAAAATCCTGTG 57.317 39.130 0.00 0.00 0.00 3.66
4416 4468 6.894339 ATTCCTACGTTTTGAAAATCCTGT 57.106 33.333 0.00 0.00 0.00 4.00
4417 4469 7.335924 TCCTATTCCTACGTTTTGAAAATCCTG 59.664 37.037 0.00 0.00 0.00 3.86
4418 4470 7.399634 TCCTATTCCTACGTTTTGAAAATCCT 58.600 34.615 0.00 0.00 0.00 3.24
4419 4471 7.619964 TCCTATTCCTACGTTTTGAAAATCC 57.380 36.000 0.00 0.00 0.00 3.01
4420 4472 9.902196 TTTTCCTATTCCTACGTTTTGAAAATC 57.098 29.630 0.00 0.00 0.00 2.17
4421 4473 9.908152 CTTTTCCTATTCCTACGTTTTGAAAAT 57.092 29.630 0.00 0.00 31.26 1.82
4422 4474 8.905850 ACTTTTCCTATTCCTACGTTTTGAAAA 58.094 29.630 0.00 0.00 0.00 2.29
4423 4475 8.454570 ACTTTTCCTATTCCTACGTTTTGAAA 57.545 30.769 0.00 0.00 0.00 2.69
4424 4476 9.729281 ATACTTTTCCTATTCCTACGTTTTGAA 57.271 29.630 0.00 0.00 0.00 2.69
4427 4479 9.828039 CCTATACTTTTCCTATTCCTACGTTTT 57.172 33.333 0.00 0.00 0.00 2.43
4428 4480 8.427276 CCCTATACTTTTCCTATTCCTACGTTT 58.573 37.037 0.00 0.00 0.00 3.60
4429 4481 7.566509 ACCCTATACTTTTCCTATTCCTACGTT 59.433 37.037 0.00 0.00 0.00 3.99
4430 4482 7.071917 ACCCTATACTTTTCCTATTCCTACGT 58.928 38.462 0.00 0.00 0.00 3.57
4431 4483 7.536159 ACCCTATACTTTTCCTATTCCTACG 57.464 40.000 0.00 0.00 0.00 3.51
4432 4484 8.155510 CCAACCCTATACTTTTCCTATTCCTAC 58.844 40.741 0.00 0.00 0.00 3.18
4433 4485 8.075621 TCCAACCCTATACTTTTCCTATTCCTA 58.924 37.037 0.00 0.00 0.00 2.94
4434 4486 6.912561 TCCAACCCTATACTTTTCCTATTCCT 59.087 38.462 0.00 0.00 0.00 3.36
4435 4487 7.145474 TCCAACCCTATACTTTTCCTATTCC 57.855 40.000 0.00 0.00 0.00 3.01
4436 4488 7.715686 CACTCCAACCCTATACTTTTCCTATTC 59.284 40.741 0.00 0.00 0.00 1.75
4437 4489 7.366551 CCACTCCAACCCTATACTTTTCCTATT 60.367 40.741 0.00 0.00 0.00 1.73
4438 4490 6.101296 CCACTCCAACCCTATACTTTTCCTAT 59.899 42.308 0.00 0.00 0.00 2.57
4439 4491 5.427481 CCACTCCAACCCTATACTTTTCCTA 59.573 44.000 0.00 0.00 0.00 2.94
4440 4492 4.227527 CCACTCCAACCCTATACTTTTCCT 59.772 45.833 0.00 0.00 0.00 3.36
4441 4493 4.524053 CCACTCCAACCCTATACTTTTCC 58.476 47.826 0.00 0.00 0.00 3.13
4442 4494 3.945921 GCCACTCCAACCCTATACTTTTC 59.054 47.826 0.00 0.00 0.00 2.29
4443 4495 3.332485 TGCCACTCCAACCCTATACTTTT 59.668 43.478 0.00 0.00 0.00 2.27
4444 4496 2.916934 TGCCACTCCAACCCTATACTTT 59.083 45.455 0.00 0.00 0.00 2.66
4445 4497 2.557869 TGCCACTCCAACCCTATACTT 58.442 47.619 0.00 0.00 0.00 2.24
4446 4498 2.263895 TGCCACTCCAACCCTATACT 57.736 50.000 0.00 0.00 0.00 2.12
4447 4499 2.851195 CATGCCACTCCAACCCTATAC 58.149 52.381 0.00 0.00 0.00 1.47
4448 4500 1.142870 GCATGCCACTCCAACCCTATA 59.857 52.381 6.36 0.00 0.00 1.31
4449 4501 0.106519 GCATGCCACTCCAACCCTAT 60.107 55.000 6.36 0.00 0.00 2.57
4450 4502 1.302949 GCATGCCACTCCAACCCTA 59.697 57.895 6.36 0.00 0.00 3.53
4451 4503 2.036256 GCATGCCACTCCAACCCT 59.964 61.111 6.36 0.00 0.00 4.34
4452 4504 2.283101 TGCATGCCACTCCAACCC 60.283 61.111 16.68 0.00 0.00 4.11
4453 4505 1.902918 TGTGCATGCCACTCCAACC 60.903 57.895 16.68 0.00 44.92 3.77
4454 4506 1.286880 GTGTGCATGCCACTCCAAC 59.713 57.895 23.79 12.15 44.92 3.77
4455 4507 0.540133 ATGTGTGCATGCCACTCCAA 60.540 50.000 28.04 15.69 44.92 3.53
4456 4508 1.075305 ATGTGTGCATGCCACTCCA 59.925 52.632 28.04 19.77 44.92 3.86
4457 4509 1.509463 CATGTGTGCATGCCACTCC 59.491 57.895 28.04 16.35 44.87 3.85
4465 4517 4.784177 TCATGTAGGATTCATGTGTGCAT 58.216 39.130 0.00 0.00 42.03 3.96
4466 4518 4.219264 TCATGTAGGATTCATGTGTGCA 57.781 40.909 5.94 0.00 42.03 4.57
4467 4519 5.762825 AATCATGTAGGATTCATGTGTGC 57.237 39.130 5.94 0.00 42.03 4.57
4468 4520 6.484308 TGCTAATCATGTAGGATTCATGTGTG 59.516 38.462 0.00 0.00 42.03 3.82
4469 4521 6.594744 TGCTAATCATGTAGGATTCATGTGT 58.405 36.000 0.00 0.00 42.03 3.72
4470 4522 7.683437 ATGCTAATCATGTAGGATTCATGTG 57.317 36.000 0.00 0.00 42.03 3.21
4471 4523 8.819845 TCTATGCTAATCATGTAGGATTCATGT 58.180 33.333 3.25 0.00 42.03 3.21
4472 4524 9.315525 CTCTATGCTAATCATGTAGGATTCATG 57.684 37.037 3.25 0.00 42.53 3.07
4473 4525 9.044646 ACTCTATGCTAATCATGTAGGATTCAT 57.955 33.333 3.25 0.00 38.41 2.57
4474 4526 8.309656 CACTCTATGCTAATCATGTAGGATTCA 58.690 37.037 3.25 0.00 38.41 2.57
4475 4527 8.310382 ACACTCTATGCTAATCATGTAGGATTC 58.690 37.037 3.25 0.00 38.41 2.52
4476 4528 8.200024 ACACTCTATGCTAATCATGTAGGATT 57.800 34.615 3.25 0.00 40.45 3.01
4477 4529 7.789202 ACACTCTATGCTAATCATGTAGGAT 57.211 36.000 3.42 3.42 36.30 3.24
4478 4530 7.603180 AACACTCTATGCTAATCATGTAGGA 57.397 36.000 0.00 0.00 36.63 2.94
4479 4531 7.928167 TCAAACACTCTATGCTAATCATGTAGG 59.072 37.037 0.00 0.00 36.63 3.18
4480 4532 8.877808 TCAAACACTCTATGCTAATCATGTAG 57.122 34.615 0.00 0.00 36.63 2.74
4481 4533 9.264719 CATCAAACACTCTATGCTAATCATGTA 57.735 33.333 0.00 0.00 36.63 2.29
4482 4534 7.228108 CCATCAAACACTCTATGCTAATCATGT 59.772 37.037 0.00 0.00 36.63 3.21
4483 4535 7.582352 CCATCAAACACTCTATGCTAATCATG 58.418 38.462 0.00 0.00 36.63 3.07
4484 4536 6.206243 GCCATCAAACACTCTATGCTAATCAT 59.794 38.462 0.00 0.00 39.17 2.45
4485 4537 5.528690 GCCATCAAACACTCTATGCTAATCA 59.471 40.000 0.00 0.00 0.00 2.57
4486 4538 5.528690 TGCCATCAAACACTCTATGCTAATC 59.471 40.000 0.00 0.00 0.00 1.75
4487 4539 5.297776 GTGCCATCAAACACTCTATGCTAAT 59.702 40.000 0.00 0.00 33.92 1.73
4488 4540 4.635765 GTGCCATCAAACACTCTATGCTAA 59.364 41.667 0.00 0.00 33.92 3.09
4489 4541 4.191544 GTGCCATCAAACACTCTATGCTA 58.808 43.478 0.00 0.00 33.92 3.49
4490 4542 3.012518 GTGCCATCAAACACTCTATGCT 58.987 45.455 0.00 0.00 33.92 3.79
4491 4543 2.749076 TGTGCCATCAAACACTCTATGC 59.251 45.455 0.00 0.00 37.68 3.14
4492 4544 3.376234 CCTGTGCCATCAAACACTCTATG 59.624 47.826 0.00 0.00 37.68 2.23
4493 4545 3.264193 TCCTGTGCCATCAAACACTCTAT 59.736 43.478 0.00 0.00 37.68 1.98
4494 4546 2.637382 TCCTGTGCCATCAAACACTCTA 59.363 45.455 0.00 0.00 37.68 2.43
4495 4547 1.421268 TCCTGTGCCATCAAACACTCT 59.579 47.619 0.00 0.00 37.68 3.24
4496 4548 1.896220 TCCTGTGCCATCAAACACTC 58.104 50.000 0.00 0.00 37.68 3.51
4497 4549 2.363306 TTCCTGTGCCATCAAACACT 57.637 45.000 0.00 0.00 37.68 3.55
4498 4550 3.383761 CTTTTCCTGTGCCATCAAACAC 58.616 45.455 0.00 0.00 37.31 3.32
4499 4551 2.224018 GCTTTTCCTGTGCCATCAAACA 60.224 45.455 0.00 0.00 0.00 2.83
4500 4552 2.224018 TGCTTTTCCTGTGCCATCAAAC 60.224 45.455 0.00 0.00 0.00 2.93
4501 4553 2.037901 TGCTTTTCCTGTGCCATCAAA 58.962 42.857 0.00 0.00 0.00 2.69
4502 4554 1.702182 TGCTTTTCCTGTGCCATCAA 58.298 45.000 0.00 0.00 0.00 2.57
4503 4555 1.702182 TTGCTTTTCCTGTGCCATCA 58.298 45.000 0.00 0.00 0.00 3.07
4504 4556 2.611224 CCTTTGCTTTTCCTGTGCCATC 60.611 50.000 0.00 0.00 0.00 3.51
4505 4557 1.345415 CCTTTGCTTTTCCTGTGCCAT 59.655 47.619 0.00 0.00 0.00 4.40
4506 4558 0.752054 CCTTTGCTTTTCCTGTGCCA 59.248 50.000 0.00 0.00 0.00 4.92
4507 4559 1.039856 TCCTTTGCTTTTCCTGTGCC 58.960 50.000 0.00 0.00 0.00 5.01
4508 4560 2.888834 TTCCTTTGCTTTTCCTGTGC 57.111 45.000 0.00 0.00 0.00 4.57
4509 4561 4.696455 ACAATTCCTTTGCTTTTCCTGTG 58.304 39.130 0.00 0.00 39.03 3.66
4510 4562 6.478512 TTACAATTCCTTTGCTTTTCCTGT 57.521 33.333 0.00 0.00 39.03 4.00
4511 4563 7.784633 TTTTACAATTCCTTTGCTTTTCCTG 57.215 32.000 0.00 0.00 39.03 3.86
4512 4564 8.264347 TCTTTTTACAATTCCTTTGCTTTTCCT 58.736 29.630 0.00 0.00 39.03 3.36
4513 4565 8.432110 TCTTTTTACAATTCCTTTGCTTTTCC 57.568 30.769 0.00 0.00 39.03 3.13
4514 4566 8.551205 CCTCTTTTTACAATTCCTTTGCTTTTC 58.449 33.333 0.00 0.00 39.03 2.29
4515 4567 8.046708 ACCTCTTTTTACAATTCCTTTGCTTTT 58.953 29.630 0.00 0.00 39.03 2.27
4516 4568 7.564793 ACCTCTTTTTACAATTCCTTTGCTTT 58.435 30.769 0.00 0.00 39.03 3.51
4517 4569 7.124573 ACCTCTTTTTACAATTCCTTTGCTT 57.875 32.000 0.00 0.00 39.03 3.91
4518 4570 6.731292 ACCTCTTTTTACAATTCCTTTGCT 57.269 33.333 0.00 0.00 39.03 3.91
4519 4571 6.202762 CCAACCTCTTTTTACAATTCCTTTGC 59.797 38.462 0.00 0.00 39.03 3.68
4520 4572 7.496747 TCCAACCTCTTTTTACAATTCCTTTG 58.503 34.615 0.00 0.00 41.36 2.77
4521 4573 7.344612 ACTCCAACCTCTTTTTACAATTCCTTT 59.655 33.333 0.00 0.00 0.00 3.11
4522 4574 6.839134 ACTCCAACCTCTTTTTACAATTCCTT 59.161 34.615 0.00 0.00 0.00 3.36
4523 4575 6.265422 CACTCCAACCTCTTTTTACAATTCCT 59.735 38.462 0.00 0.00 0.00 3.36
4524 4576 6.447162 CACTCCAACCTCTTTTTACAATTCC 58.553 40.000 0.00 0.00 0.00 3.01
4525 4577 6.264518 TCCACTCCAACCTCTTTTTACAATTC 59.735 38.462 0.00 0.00 0.00 2.17
4526 4578 6.133356 TCCACTCCAACCTCTTTTTACAATT 58.867 36.000 0.00 0.00 0.00 2.32
4527 4579 5.701224 TCCACTCCAACCTCTTTTTACAAT 58.299 37.500 0.00 0.00 0.00 2.71
4528 4580 5.118729 TCCACTCCAACCTCTTTTTACAA 57.881 39.130 0.00 0.00 0.00 2.41
4529 4581 4.781775 TCCACTCCAACCTCTTTTTACA 57.218 40.909 0.00 0.00 0.00 2.41
4530 4582 5.070685 ACATCCACTCCAACCTCTTTTTAC 58.929 41.667 0.00 0.00 0.00 2.01
4531 4583 5.319043 ACATCCACTCCAACCTCTTTTTA 57.681 39.130 0.00 0.00 0.00 1.52
4532 4584 4.184649 ACATCCACTCCAACCTCTTTTT 57.815 40.909 0.00 0.00 0.00 1.94
4533 4585 3.884037 ACATCCACTCCAACCTCTTTT 57.116 42.857 0.00 0.00 0.00 2.27
4534 4586 3.884037 AACATCCACTCCAACCTCTTT 57.116 42.857 0.00 0.00 0.00 2.52
4535 4587 4.168101 TCTAACATCCACTCCAACCTCTT 58.832 43.478 0.00 0.00 0.00 2.85
4536 4588 3.791320 TCTAACATCCACTCCAACCTCT 58.209 45.455 0.00 0.00 0.00 3.69
4537 4589 4.762289 ATCTAACATCCACTCCAACCTC 57.238 45.455 0.00 0.00 0.00 3.85
4538 4590 5.501156 GAAATCTAACATCCACTCCAACCT 58.499 41.667 0.00 0.00 0.00 3.50
4539 4591 4.640647 GGAAATCTAACATCCACTCCAACC 59.359 45.833 0.00 0.00 33.30 3.77
4540 4592 5.501156 AGGAAATCTAACATCCACTCCAAC 58.499 41.667 0.00 0.00 35.62 3.77
4541 4593 5.779241 AGGAAATCTAACATCCACTCCAA 57.221 39.130 0.00 0.00 35.62 3.53
4542 4594 6.615316 TCATAGGAAATCTAACATCCACTCCA 59.385 38.462 0.00 0.00 35.62 3.86
4543 4595 7.067496 TCATAGGAAATCTAACATCCACTCC 57.933 40.000 0.00 0.00 35.62 3.85
4544 4596 8.964476 TTTCATAGGAAATCTAACATCCACTC 57.036 34.615 0.00 0.00 38.07 3.51
4607 4659 7.503566 TGGTCTTTTGATTCATAGGATTGGATC 59.496 37.037 0.00 0.00 32.97 3.36
4608 4660 7.356680 TGGTCTTTTGATTCATAGGATTGGAT 58.643 34.615 0.00 0.00 0.00 3.41
4609 4661 6.730447 TGGTCTTTTGATTCATAGGATTGGA 58.270 36.000 0.00 0.00 0.00 3.53
4610 4662 7.093814 TGTTGGTCTTTTGATTCATAGGATTGG 60.094 37.037 0.00 0.00 0.00 3.16
4611 4663 7.829725 TGTTGGTCTTTTGATTCATAGGATTG 58.170 34.615 0.00 0.00 0.00 2.67
4612 4664 8.599624 ATGTTGGTCTTTTGATTCATAGGATT 57.400 30.769 0.00 0.00 0.00 3.01
4613 4665 9.347240 CTATGTTGGTCTTTTGATTCATAGGAT 57.653 33.333 0.00 0.00 33.64 3.24
4614 4666 8.548025 TCTATGTTGGTCTTTTGATTCATAGGA 58.452 33.333 0.00 0.00 36.17 2.94
4615 4667 8.737168 TCTATGTTGGTCTTTTGATTCATAGG 57.263 34.615 0.00 0.00 36.17 2.57
4617 4669 9.958180 TCTTCTATGTTGGTCTTTTGATTCATA 57.042 29.630 0.00 0.00 0.00 2.15
4618 4670 8.868522 TCTTCTATGTTGGTCTTTTGATTCAT 57.131 30.769 0.00 0.00 0.00 2.57
4619 4671 8.690203 TTCTTCTATGTTGGTCTTTTGATTCA 57.310 30.769 0.00 0.00 0.00 2.57
4623 4675 9.354673 AGAATTTCTTCTATGTTGGTCTTTTGA 57.645 29.630 0.00 0.00 40.00 2.69
4624 4676 9.971922 AAGAATTTCTTCTATGTTGGTCTTTTG 57.028 29.630 5.82 0.00 40.93 2.44
4628 4680 9.454859 CCTTAAGAATTTCTTCTATGTTGGTCT 57.545 33.333 14.75 0.00 40.93 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.